Multiple sequence alignment - TraesCS2D01G536900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G536900 chr2D 100.000 5067 0 0 1 5067 619089243 619094309 0.000000e+00 9358.0
1 TraesCS2D01G536900 chr2D 96.875 192 6 0 1 192 507842829 507842638 6.330000e-84 322.0
2 TraesCS2D01G536900 chr2D 74.101 695 142 28 3276 3940 585749767 585749081 8.420000e-63 252.0
3 TraesCS2D01G536900 chr2D 84.848 198 30 0 2942 3139 585687274 585687077 3.090000e-47 200.0
4 TraesCS2D01G536900 chr2D 70.267 898 221 40 1453 2330 18762904 18762033 2.460000e-28 137.0
5 TraesCS2D01G536900 chr2A 95.308 2451 104 9 2620 5067 749953900 749956342 0.000000e+00 3879.0
6 TraesCS2D01G536900 chr2A 91.612 2122 111 23 507 2610 749950388 749952460 0.000000e+00 2870.0
7 TraesCS2D01G536900 chr2A 88.244 1344 134 11 996 2339 721106928 721105609 0.000000e+00 1585.0
8 TraesCS2D01G536900 chr2A 84.446 1228 135 24 2443 3650 721105501 721104310 0.000000e+00 1158.0
9 TraesCS2D01G536900 chr2A 85.361 485 59 9 3646 4120 721084073 721083591 4.560000e-135 492.0
10 TraesCS2D01G536900 chr2A 76.011 717 143 22 3242 3940 751209816 751210521 1.350000e-90 344.0
11 TraesCS2D01G536900 chr2A 74.927 686 147 21 3273 3940 751168199 751168877 1.780000e-74 291.0
12 TraesCS2D01G536900 chr2A 73.623 690 149 26 3273 3940 751029174 751029852 8.480000e-58 235.0
13 TraesCS2D01G536900 chr2A 83.838 198 32 0 2942 3139 719729940 719729743 6.700000e-44 189.0
14 TraesCS2D01G536900 chr2B 88.935 2169 142 52 492 2612 756606685 756604567 0.000000e+00 2586.0
15 TraesCS2D01G536900 chr2B 86.864 1964 223 26 2627 4584 756604520 756602586 0.000000e+00 2165.0
16 TraesCS2D01G536900 chr2B 86.760 1352 139 19 1002 2337 707970298 707968971 0.000000e+00 1469.0
17 TraesCS2D01G536900 chr2B 83.485 1653 186 39 2443 4066 707968601 707967007 0.000000e+00 1459.0
18 TraesCS2D01G536900 chr2B 74.805 1024 199 43 2942 3940 706923173 706922184 1.700000e-109 407.0
19 TraesCS2D01G536900 chr2B 75.620 685 144 20 3273 3940 758670824 758671502 8.190000e-83 318.0
20 TraesCS2D01G536900 chr2B 72.564 1057 247 35 2919 3940 707240287 707239239 6.370000e-79 305.0
21 TraesCS2D01G536900 chr2B 74.443 763 151 37 2919 3654 707959868 707959123 6.420000e-74 289.0
22 TraesCS2D01G536900 chr2B 71.543 1244 276 60 1112 2328 755150694 755149502 1.080000e-66 265.0
23 TraesCS2D01G536900 chr2B 74.513 565 120 19 2916 3469 756637098 756637649 1.840000e-54 224.0
24 TraesCS2D01G536900 chr2B 75.234 428 80 19 3215 3622 20147036 20147457 4.030000e-41 180.0
25 TraesCS2D01G536900 chr2B 70.576 469 125 11 1794 2254 756328323 756327860 6.990000e-14 89.8
26 TraesCS2D01G536900 chr2B 80.189 106 19 2 2150 2254 756342266 756342162 1.510000e-10 78.7
27 TraesCS2D01G536900 chr4B 93.194 191 13 0 1 191 476878267 476878457 1.070000e-71 281.0
28 TraesCS2D01G536900 chrUn 75.044 573 123 18 2913 3473 74781482 74782046 1.090000e-61 248.0
29 TraesCS2D01G536900 chr5D 87.413 143 16 1 1 143 552688189 552688049 4.060000e-36 163.0
30 TraesCS2D01G536900 chr3A 96.875 32 1 0 5036 5067 328300166 328300197 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G536900 chr2D 619089243 619094309 5066 False 9358.0 9358 100.0000 1 5067 1 chr2D.!!$F1 5066
1 TraesCS2D01G536900 chr2D 585749081 585749767 686 True 252.0 252 74.1010 3276 3940 1 chr2D.!!$R4 664
2 TraesCS2D01G536900 chr2A 749950388 749956342 5954 False 3374.5 3879 93.4600 507 5067 2 chr2A.!!$F4 4560
3 TraesCS2D01G536900 chr2A 721104310 721106928 2618 True 1371.5 1585 86.3450 996 3650 2 chr2A.!!$R3 2654
4 TraesCS2D01G536900 chr2A 751209816 751210521 705 False 344.0 344 76.0110 3242 3940 1 chr2A.!!$F3 698
5 TraesCS2D01G536900 chr2A 751168199 751168877 678 False 291.0 291 74.9270 3273 3940 1 chr2A.!!$F2 667
6 TraesCS2D01G536900 chr2A 751029174 751029852 678 False 235.0 235 73.6230 3273 3940 1 chr2A.!!$F1 667
7 TraesCS2D01G536900 chr2B 756602586 756606685 4099 True 2375.5 2586 87.8995 492 4584 2 chr2B.!!$R8 4092
8 TraesCS2D01G536900 chr2B 707967007 707970298 3291 True 1464.0 1469 85.1225 1002 4066 2 chr2B.!!$R7 3064
9 TraesCS2D01G536900 chr2B 706922184 706923173 989 True 407.0 407 74.8050 2942 3940 1 chr2B.!!$R1 998
10 TraesCS2D01G536900 chr2B 758670824 758671502 678 False 318.0 318 75.6200 3273 3940 1 chr2B.!!$F3 667
11 TraesCS2D01G536900 chr2B 707239239 707240287 1048 True 305.0 305 72.5640 2919 3940 1 chr2B.!!$R2 1021
12 TraesCS2D01G536900 chr2B 707959123 707959868 745 True 289.0 289 74.4430 2919 3654 1 chr2B.!!$R3 735
13 TraesCS2D01G536900 chr2B 755149502 755150694 1192 True 265.0 265 71.5430 1112 2328 1 chr2B.!!$R4 1216
14 TraesCS2D01G536900 chr2B 756637098 756637649 551 False 224.0 224 74.5130 2916 3469 1 chr2B.!!$F2 553
15 TraesCS2D01G536900 chrUn 74781482 74782046 564 False 248.0 248 75.0440 2913 3473 1 chrUn.!!$F1 560

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
90 91 0.098376 GACTAGTGGACGTACGGCTG 59.902 60.0 22.53 8.84 0.00 4.85 F
231 232 0.108041 GGGCATGGAGGCAACAAATG 60.108 55.0 0.00 0.00 46.44 2.32 F
233 234 0.108041 GCATGGAGGCAACAAATGGG 60.108 55.0 0.00 0.00 41.41 4.00 F
1035 1088 0.108898 GTGTCATGCTCGTCTCAGCT 60.109 55.0 0.00 0.00 40.39 4.24 F
1386 1452 0.164002 GCGCCACTTCTTCTTCGTTC 59.836 55.0 0.00 0.00 0.00 3.95 F
2670 4504 1.068474 CTAGGCAACCGTCGAAACAG 58.932 55.0 0.00 0.00 37.17 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1485 1557 1.224592 GGCGATCAGGGTGTTGGAT 59.775 57.895 0.00 0.0 0.0 3.41 R
2211 2295 2.725312 GCCGCCTCCTCTGATGTCA 61.725 63.158 0.00 0.0 0.0 3.58 R
2380 2724 7.170965 AGAGACATCACAGATTTATTGTTGGT 58.829 34.615 0.00 0.0 0.0 3.67 R
2768 4602 0.454452 GAGAAATCGTTTGTGGCGGC 60.454 55.000 0.00 0.0 0.0 6.53 R
2906 4743 4.125703 CAGTATTCCCTGCAGAACATCTC 58.874 47.826 17.39 0.0 0.0 2.75 R
4631 6551 0.389948 GGTTGCTCTCACCGTCGAAT 60.390 55.000 0.00 0.0 0.0 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.715464 CGGAATTCTTGTATTACACACATCC 58.285 40.000 5.23 1.33 36.69 3.51
25 26 6.509517 CGGAATTCTTGTATTACACACATCCG 60.510 42.308 16.26 16.26 36.69 4.18
26 27 6.315393 GGAATTCTTGTATTACACACATCCGT 59.685 38.462 5.23 0.00 36.69 4.69
27 28 6.903883 ATTCTTGTATTACACACATCCGTC 57.096 37.500 0.00 0.00 36.69 4.79
28 29 4.417506 TCTTGTATTACACACATCCGTCG 58.582 43.478 0.00 0.00 36.69 5.12
29 30 3.853831 TGTATTACACACATCCGTCGT 57.146 42.857 0.00 0.00 30.04 4.34
30 31 4.961435 TGTATTACACACATCCGTCGTA 57.039 40.909 0.00 0.00 30.04 3.43
31 32 4.912214 TGTATTACACACATCCGTCGTAG 58.088 43.478 0.00 0.00 30.04 3.51
32 33 2.267188 TTACACACATCCGTCGTAGC 57.733 50.000 0.00 0.00 0.00 3.58
33 34 0.452987 TACACACATCCGTCGTAGCC 59.547 55.000 0.00 0.00 0.00 3.93
34 35 1.214325 CACACATCCGTCGTAGCCA 59.786 57.895 0.00 0.00 0.00 4.75
35 36 0.389296 CACACATCCGTCGTAGCCAA 60.389 55.000 0.00 0.00 0.00 4.52
36 37 0.319083 ACACATCCGTCGTAGCCAAA 59.681 50.000 0.00 0.00 0.00 3.28
37 38 1.270412 ACACATCCGTCGTAGCCAAAA 60.270 47.619 0.00 0.00 0.00 2.44
38 39 2.006888 CACATCCGTCGTAGCCAAAAT 58.993 47.619 0.00 0.00 0.00 1.82
39 40 3.191669 CACATCCGTCGTAGCCAAAATA 58.808 45.455 0.00 0.00 0.00 1.40
40 41 3.807622 CACATCCGTCGTAGCCAAAATAT 59.192 43.478 0.00 0.00 0.00 1.28
41 42 4.272504 CACATCCGTCGTAGCCAAAATATT 59.727 41.667 0.00 0.00 0.00 1.28
42 43 4.272504 ACATCCGTCGTAGCCAAAATATTG 59.727 41.667 0.00 0.00 36.25 1.90
43 44 2.610374 TCCGTCGTAGCCAAAATATTGC 59.390 45.455 0.00 0.00 35.10 3.56
44 45 2.612212 CCGTCGTAGCCAAAATATTGCT 59.388 45.455 4.40 4.40 35.10 3.91
45 46 3.805422 CCGTCGTAGCCAAAATATTGCTA 59.195 43.478 2.67 2.67 35.10 3.49
46 47 4.084537 CCGTCGTAGCCAAAATATTGCTAG 60.085 45.833 6.30 0.00 35.10 3.42
47 48 4.608445 CGTCGTAGCCAAAATATTGCTAGC 60.608 45.833 8.10 8.10 35.10 3.42
48 49 3.813166 TCGTAGCCAAAATATTGCTAGCC 59.187 43.478 13.29 0.00 35.10 3.93
49 50 3.563808 CGTAGCCAAAATATTGCTAGCCA 59.436 43.478 13.29 0.19 35.10 4.75
50 51 4.554723 CGTAGCCAAAATATTGCTAGCCAC 60.555 45.833 13.29 0.00 35.10 5.01
51 52 3.635591 AGCCAAAATATTGCTAGCCACT 58.364 40.909 13.29 0.00 35.10 4.00
52 53 4.792068 AGCCAAAATATTGCTAGCCACTA 58.208 39.130 13.29 1.22 35.10 2.74
53 54 5.388654 AGCCAAAATATTGCTAGCCACTAT 58.611 37.500 13.29 3.71 35.10 2.12
54 55 6.542821 AGCCAAAATATTGCTAGCCACTATA 58.457 36.000 13.29 5.43 35.10 1.31
55 56 7.177878 AGCCAAAATATTGCTAGCCACTATAT 58.822 34.615 13.29 7.47 35.10 0.86
56 57 7.121759 AGCCAAAATATTGCTAGCCACTATATG 59.878 37.037 13.29 4.30 35.10 1.78
57 58 7.629222 GCCAAAATATTGCTAGCCACTATATGG 60.629 40.741 13.29 13.94 42.46 2.74
71 72 6.748132 CCACTATATGGCAAATTTTGGTAGG 58.252 40.000 10.96 0.92 43.24 3.18
72 73 6.549364 CCACTATATGGCAAATTTTGGTAGGA 59.451 38.462 10.96 0.00 43.24 2.94
73 74 7.425606 CACTATATGGCAAATTTTGGTAGGAC 58.574 38.462 10.96 0.00 0.00 3.85
74 75 7.285401 CACTATATGGCAAATTTTGGTAGGACT 59.715 37.037 10.96 0.00 0.00 3.85
75 76 8.499406 ACTATATGGCAAATTTTGGTAGGACTA 58.501 33.333 10.96 0.00 0.00 2.59
76 77 7.823745 ATATGGCAAATTTTGGTAGGACTAG 57.176 36.000 10.96 0.00 0.00 2.57
77 78 4.993028 TGGCAAATTTTGGTAGGACTAGT 58.007 39.130 10.96 0.00 0.00 2.57
78 79 4.764823 TGGCAAATTTTGGTAGGACTAGTG 59.235 41.667 0.00 0.00 0.00 2.74
79 80 4.157840 GGCAAATTTTGGTAGGACTAGTGG 59.842 45.833 0.00 0.00 0.00 4.00
80 81 5.007682 GCAAATTTTGGTAGGACTAGTGGA 58.992 41.667 0.00 0.00 0.00 4.02
81 82 5.106277 GCAAATTTTGGTAGGACTAGTGGAC 60.106 44.000 0.00 0.00 0.00 4.02
82 83 3.947910 TTTTGGTAGGACTAGTGGACG 57.052 47.619 0.00 0.00 0.00 4.79
83 84 2.592102 TTGGTAGGACTAGTGGACGT 57.408 50.000 0.00 0.00 0.00 4.34
84 85 3.719268 TTGGTAGGACTAGTGGACGTA 57.281 47.619 0.00 0.00 0.00 3.57
85 86 2.991250 TGGTAGGACTAGTGGACGTAC 58.009 52.381 0.00 2.25 0.00 3.67
86 87 1.936547 GGTAGGACTAGTGGACGTACG 59.063 57.143 15.01 15.01 0.00 3.67
87 88 1.936547 GTAGGACTAGTGGACGTACGG 59.063 57.143 21.06 1.80 0.00 4.02
88 89 1.028868 AGGACTAGTGGACGTACGGC 61.029 60.000 21.06 17.96 0.00 5.68
89 90 1.028868 GGACTAGTGGACGTACGGCT 61.029 60.000 22.53 14.07 0.00 5.52
90 91 0.098376 GACTAGTGGACGTACGGCTG 59.902 60.000 22.53 8.84 0.00 4.85
91 92 0.607489 ACTAGTGGACGTACGGCTGT 60.607 55.000 22.53 8.35 0.00 4.40
92 93 0.098376 CTAGTGGACGTACGGCTGTC 59.902 60.000 22.53 11.50 0.00 3.51
93 94 0.321919 TAGTGGACGTACGGCTGTCT 60.322 55.000 22.53 17.80 35.45 3.41
94 95 1.443872 GTGGACGTACGGCTGTCTG 60.444 63.158 22.53 0.00 35.45 3.51
95 96 2.181021 GGACGTACGGCTGTCTGG 59.819 66.667 22.53 0.00 35.45 3.86
96 97 2.506438 GACGTACGGCTGTCTGGC 60.506 66.667 21.06 0.00 37.94 4.85
97 98 2.989824 ACGTACGGCTGTCTGGCT 60.990 61.111 21.06 0.00 39.32 4.75
98 99 2.261671 CGTACGGCTGTCTGGCTT 59.738 61.111 7.57 0.00 39.32 4.35
99 100 2.094659 CGTACGGCTGTCTGGCTTG 61.095 63.158 7.57 0.00 39.32 4.01
100 101 1.741770 GTACGGCTGTCTGGCTTGG 60.742 63.158 0.00 0.00 39.32 3.61
101 102 2.214216 TACGGCTGTCTGGCTTGGT 61.214 57.895 0.00 0.00 39.32 3.67
102 103 1.764571 TACGGCTGTCTGGCTTGGTT 61.765 55.000 0.00 0.00 39.32 3.67
103 104 2.328099 CGGCTGTCTGGCTTGGTTC 61.328 63.158 1.84 0.00 39.32 3.62
104 105 1.973812 GGCTGTCTGGCTTGGTTCC 60.974 63.158 0.00 0.00 38.32 3.62
105 106 1.228245 GCTGTCTGGCTTGGTTCCA 60.228 57.895 0.00 0.00 0.00 3.53
106 107 1.518903 GCTGTCTGGCTTGGTTCCAC 61.519 60.000 0.00 0.00 0.00 4.02
107 108 0.179020 CTGTCTGGCTTGGTTCCACA 60.179 55.000 0.00 0.00 0.00 4.17
108 109 0.465460 TGTCTGGCTTGGTTCCACAC 60.465 55.000 0.00 0.00 0.00 3.82
136 137 3.872354 ACATCGTGAATGTTTGTGAACG 58.128 40.909 0.00 0.00 46.73 3.95
137 138 3.311322 ACATCGTGAATGTTTGTGAACGT 59.689 39.130 0.00 0.00 46.73 3.99
138 139 3.311788 TCGTGAATGTTTGTGAACGTG 57.688 42.857 0.00 0.00 38.65 4.49
139 140 2.930682 TCGTGAATGTTTGTGAACGTGA 59.069 40.909 0.00 0.00 38.65 4.35
140 141 3.558006 TCGTGAATGTTTGTGAACGTGAT 59.442 39.130 0.00 0.00 38.65 3.06
141 142 4.034626 TCGTGAATGTTTGTGAACGTGATT 59.965 37.500 0.00 0.00 38.65 2.57
142 143 4.144561 CGTGAATGTTTGTGAACGTGATTG 59.855 41.667 0.00 0.00 38.65 2.67
143 144 5.034152 GTGAATGTTTGTGAACGTGATTGT 58.966 37.500 0.00 0.00 38.65 2.71
144 145 6.195868 GTGAATGTTTGTGAACGTGATTGTA 58.804 36.000 0.00 0.00 38.65 2.41
145 146 6.689241 GTGAATGTTTGTGAACGTGATTGTAA 59.311 34.615 0.00 0.00 38.65 2.41
146 147 7.378461 GTGAATGTTTGTGAACGTGATTGTAAT 59.622 33.333 0.00 0.00 38.65 1.89
147 148 7.589587 TGAATGTTTGTGAACGTGATTGTAATC 59.410 33.333 0.00 0.00 38.65 1.75
148 149 5.753744 TGTTTGTGAACGTGATTGTAATCC 58.246 37.500 0.00 0.00 38.65 3.01
149 150 5.151389 GTTTGTGAACGTGATTGTAATCCC 58.849 41.667 0.00 0.00 34.50 3.85
150 151 4.280436 TGTGAACGTGATTGTAATCCCT 57.720 40.909 0.00 0.00 34.50 4.20
151 152 5.408880 TGTGAACGTGATTGTAATCCCTA 57.591 39.130 0.00 0.00 34.50 3.53
152 153 5.795972 TGTGAACGTGATTGTAATCCCTAA 58.204 37.500 0.00 0.00 34.50 2.69
153 154 6.231951 TGTGAACGTGATTGTAATCCCTAAA 58.768 36.000 0.00 0.00 34.50 1.85
154 155 6.370442 TGTGAACGTGATTGTAATCCCTAAAG 59.630 38.462 0.00 0.00 34.50 1.85
155 156 6.370718 GTGAACGTGATTGTAATCCCTAAAGT 59.629 38.462 0.00 0.00 34.50 2.66
156 157 6.938030 TGAACGTGATTGTAATCCCTAAAGTT 59.062 34.615 0.00 0.00 34.50 2.66
157 158 7.446013 TGAACGTGATTGTAATCCCTAAAGTTT 59.554 33.333 0.00 0.00 34.50 2.66
158 159 7.373778 ACGTGATTGTAATCCCTAAAGTTTC 57.626 36.000 0.00 0.00 34.50 2.78
159 160 7.166167 ACGTGATTGTAATCCCTAAAGTTTCT 58.834 34.615 0.00 0.00 34.50 2.52
160 161 7.119262 ACGTGATTGTAATCCCTAAAGTTTCTG 59.881 37.037 0.00 0.00 34.50 3.02
161 162 7.119262 CGTGATTGTAATCCCTAAAGTTTCTGT 59.881 37.037 0.00 0.00 34.50 3.41
162 163 8.237267 GTGATTGTAATCCCTAAAGTTTCTGTG 58.763 37.037 0.00 0.00 34.50 3.66
163 164 7.942341 TGATTGTAATCCCTAAAGTTTCTGTGT 59.058 33.333 0.00 0.00 34.50 3.72
164 165 9.444600 GATTGTAATCCCTAAAGTTTCTGTGTA 57.555 33.333 0.00 0.00 0.00 2.90
165 166 9.802039 ATTGTAATCCCTAAAGTTTCTGTGTAA 57.198 29.630 0.00 0.00 0.00 2.41
166 167 9.802039 TTGTAATCCCTAAAGTTTCTGTGTAAT 57.198 29.630 0.00 0.00 0.00 1.89
170 171 9.802039 AATCCCTAAAGTTTCTGTGTAATACAA 57.198 29.630 0.00 0.00 39.20 2.41
171 172 8.842358 TCCCTAAAGTTTCTGTGTAATACAAG 57.158 34.615 0.00 0.00 39.20 3.16
172 173 8.653191 TCCCTAAAGTTTCTGTGTAATACAAGA 58.347 33.333 0.00 0.00 39.20 3.02
173 174 8.936864 CCCTAAAGTTTCTGTGTAATACAAGAG 58.063 37.037 0.00 0.00 39.20 2.85
174 175 9.490379 CCTAAAGTTTCTGTGTAATACAAGAGT 57.510 33.333 0.00 0.00 39.20 3.24
182 183 8.181487 TCTGTGTAATACAAGAGTTATTTCGC 57.819 34.615 0.00 0.00 39.20 4.70
183 184 7.815549 TCTGTGTAATACAAGAGTTATTTCGCA 59.184 33.333 0.00 0.00 39.20 5.10
184 185 8.312896 TGTGTAATACAAGAGTTATTTCGCAA 57.687 30.769 0.00 0.00 36.06 4.85
185 186 8.775527 TGTGTAATACAAGAGTTATTTCGCAAA 58.224 29.630 0.00 0.00 36.06 3.68
186 187 9.601971 GTGTAATACAAGAGTTATTTCGCAAAA 57.398 29.630 0.00 0.00 0.00 2.44
211 212 7.806409 AAAAACCCATGGAGAATTTGAAAAG 57.194 32.000 15.22 0.00 0.00 2.27
212 213 5.488262 AACCCATGGAGAATTTGAAAAGG 57.512 39.130 15.22 0.00 0.00 3.11
213 214 3.840078 ACCCATGGAGAATTTGAAAAGGG 59.160 43.478 15.22 0.00 38.52 3.95
214 215 3.198417 CCCATGGAGAATTTGAAAAGGGG 59.802 47.826 15.22 0.00 0.00 4.79
215 216 3.369787 CCATGGAGAATTTGAAAAGGGGC 60.370 47.826 5.56 0.00 0.00 5.80
216 217 2.969628 TGGAGAATTTGAAAAGGGGCA 58.030 42.857 0.00 0.00 0.00 5.36
217 218 3.519667 TGGAGAATTTGAAAAGGGGCAT 58.480 40.909 0.00 0.00 0.00 4.40
218 219 3.261390 TGGAGAATTTGAAAAGGGGCATG 59.739 43.478 0.00 0.00 0.00 4.06
219 220 3.369787 GGAGAATTTGAAAAGGGGCATGG 60.370 47.826 0.00 0.00 0.00 3.66
220 221 3.515104 GAGAATTTGAAAAGGGGCATGGA 59.485 43.478 0.00 0.00 0.00 3.41
221 222 3.516700 AGAATTTGAAAAGGGGCATGGAG 59.483 43.478 0.00 0.00 0.00 3.86
222 223 1.643310 TTTGAAAAGGGGCATGGAGG 58.357 50.000 0.00 0.00 0.00 4.30
223 224 0.904394 TTGAAAAGGGGCATGGAGGC 60.904 55.000 0.00 0.00 43.27 4.70
224 225 1.305213 GAAAAGGGGCATGGAGGCA 60.305 57.895 0.00 0.00 46.44 4.75
225 226 0.904394 GAAAAGGGGCATGGAGGCAA 60.904 55.000 0.00 0.00 46.44 4.52
226 227 1.194121 AAAAGGGGCATGGAGGCAAC 61.194 55.000 0.00 0.00 46.44 4.17
227 228 2.384933 AAAGGGGCATGGAGGCAACA 62.385 55.000 0.00 0.00 46.44 3.33
228 229 2.283821 GGGGCATGGAGGCAACAA 60.284 61.111 0.00 0.00 46.44 2.83
229 230 1.912763 GGGGCATGGAGGCAACAAA 60.913 57.895 0.00 0.00 46.44 2.83
230 231 1.266867 GGGGCATGGAGGCAACAAAT 61.267 55.000 0.00 0.00 46.44 2.32
231 232 0.108041 GGGCATGGAGGCAACAAATG 60.108 55.000 0.00 0.00 46.44 2.32
232 233 0.108041 GGCATGGAGGCAACAAATGG 60.108 55.000 0.00 0.00 43.51 3.16
233 234 0.108041 GCATGGAGGCAACAAATGGG 60.108 55.000 0.00 0.00 41.41 4.00
234 235 0.538118 CATGGAGGCAACAAATGGGG 59.462 55.000 0.00 0.00 41.41 4.96
235 236 1.266867 ATGGAGGCAACAAATGGGGC 61.267 55.000 0.00 0.00 41.41 5.80
236 237 1.912763 GGAGGCAACAAATGGGGCA 60.913 57.895 0.00 0.00 41.41 5.36
237 238 1.593265 GAGGCAACAAATGGGGCAG 59.407 57.895 0.00 0.00 41.41 4.85
238 239 1.152269 AGGCAACAAATGGGGCAGT 60.152 52.632 0.00 0.00 41.41 4.40
239 240 0.114168 AGGCAACAAATGGGGCAGTA 59.886 50.000 0.00 0.00 41.41 2.74
240 241 1.194218 GGCAACAAATGGGGCAGTAT 58.806 50.000 0.00 0.00 0.00 2.12
241 242 1.554617 GGCAACAAATGGGGCAGTATT 59.445 47.619 0.00 0.00 0.00 1.89
242 243 2.027285 GGCAACAAATGGGGCAGTATTT 60.027 45.455 0.00 0.00 0.00 1.40
243 244 3.558958 GGCAACAAATGGGGCAGTATTTT 60.559 43.478 0.00 0.00 0.00 1.82
244 245 3.436359 GCAACAAATGGGGCAGTATTTTG 59.564 43.478 0.00 0.00 0.00 2.44
245 246 3.979101 ACAAATGGGGCAGTATTTTGG 57.021 42.857 0.00 0.00 0.00 3.28
246 247 3.247162 ACAAATGGGGCAGTATTTTGGT 58.753 40.909 0.00 0.00 0.00 3.67
247 248 4.421131 ACAAATGGGGCAGTATTTTGGTA 58.579 39.130 0.00 0.00 0.00 3.25
248 249 5.029474 ACAAATGGGGCAGTATTTTGGTAT 58.971 37.500 0.00 0.00 0.00 2.73
249 250 5.128663 ACAAATGGGGCAGTATTTTGGTATC 59.871 40.000 0.00 0.00 0.00 2.24
250 251 4.534647 ATGGGGCAGTATTTTGGTATCA 57.465 40.909 0.00 0.00 0.00 2.15
251 252 4.534647 TGGGGCAGTATTTTGGTATCAT 57.465 40.909 0.00 0.00 0.00 2.45
252 253 4.469657 TGGGGCAGTATTTTGGTATCATC 58.530 43.478 0.00 0.00 0.00 2.92
253 254 4.167892 TGGGGCAGTATTTTGGTATCATCT 59.832 41.667 0.00 0.00 0.00 2.90
254 255 4.762251 GGGGCAGTATTTTGGTATCATCTC 59.238 45.833 0.00 0.00 0.00 2.75
255 256 5.376625 GGGCAGTATTTTGGTATCATCTCA 58.623 41.667 0.00 0.00 0.00 3.27
256 257 5.239525 GGGCAGTATTTTGGTATCATCTCAC 59.760 44.000 0.00 0.00 0.00 3.51
257 258 5.822519 GGCAGTATTTTGGTATCATCTCACA 59.177 40.000 0.00 0.00 0.00 3.58
258 259 6.238484 GGCAGTATTTTGGTATCATCTCACAC 60.238 42.308 0.00 0.00 0.00 3.82
259 260 6.238484 GCAGTATTTTGGTATCATCTCACACC 60.238 42.308 0.00 0.00 0.00 4.16
260 261 7.050377 CAGTATTTTGGTATCATCTCACACCT 58.950 38.462 0.00 0.00 32.04 4.00
261 262 7.225538 CAGTATTTTGGTATCATCTCACACCTC 59.774 40.741 0.00 0.00 32.04 3.85
262 263 5.497464 TTTTGGTATCATCTCACACCTCA 57.503 39.130 0.00 0.00 32.04 3.86
263 264 5.497464 TTTGGTATCATCTCACACCTCAA 57.503 39.130 0.00 0.00 32.04 3.02
264 265 5.497464 TTGGTATCATCTCACACCTCAAA 57.503 39.130 0.00 0.00 32.04 2.69
265 266 5.497464 TGGTATCATCTCACACCTCAAAA 57.503 39.130 0.00 0.00 32.04 2.44
266 267 6.065976 TGGTATCATCTCACACCTCAAAAT 57.934 37.500 0.00 0.00 32.04 1.82
267 268 6.484288 TGGTATCATCTCACACCTCAAAATT 58.516 36.000 0.00 0.00 32.04 1.82
268 269 7.629157 TGGTATCATCTCACACCTCAAAATTA 58.371 34.615 0.00 0.00 32.04 1.40
269 270 8.274322 TGGTATCATCTCACACCTCAAAATTAT 58.726 33.333 0.00 0.00 32.04 1.28
270 271 9.125026 GGTATCATCTCACACCTCAAAATTATT 57.875 33.333 0.00 0.00 0.00 1.40
273 274 8.868522 TCATCTCACACCTCAAAATTATTCTT 57.131 30.769 0.00 0.00 0.00 2.52
274 275 9.300681 TCATCTCACACCTCAAAATTATTCTTT 57.699 29.630 0.00 0.00 0.00 2.52
275 276 9.350357 CATCTCACACCTCAAAATTATTCTTTG 57.650 33.333 0.00 0.00 35.51 2.77
276 277 8.463930 TCTCACACCTCAAAATTATTCTTTGT 57.536 30.769 0.00 0.00 35.65 2.83
277 278 8.567948 TCTCACACCTCAAAATTATTCTTTGTC 58.432 33.333 0.00 0.00 35.65 3.18
278 279 8.463930 TCACACCTCAAAATTATTCTTTGTCT 57.536 30.769 0.00 0.00 35.65 3.41
279 280 8.912988 TCACACCTCAAAATTATTCTTTGTCTT 58.087 29.630 0.00 0.00 35.65 3.01
280 281 9.533253 CACACCTCAAAATTATTCTTTGTCTTT 57.467 29.630 0.00 0.00 35.65 2.52
332 333 6.693315 ATACCTGTTGTATTGTTGTATGGC 57.307 37.500 0.00 0.00 36.77 4.40
333 334 3.761752 ACCTGTTGTATTGTTGTATGGCC 59.238 43.478 0.00 0.00 0.00 5.36
334 335 3.181501 CCTGTTGTATTGTTGTATGGCCG 60.182 47.826 0.00 0.00 0.00 6.13
335 336 3.413327 TGTTGTATTGTTGTATGGCCGT 58.587 40.909 1.35 1.35 0.00 5.68
336 337 3.821600 TGTTGTATTGTTGTATGGCCGTT 59.178 39.130 0.77 0.00 0.00 4.44
337 338 4.278669 TGTTGTATTGTTGTATGGCCGTTT 59.721 37.500 0.77 0.00 0.00 3.60
338 339 4.688511 TGTATTGTTGTATGGCCGTTTC 57.311 40.909 0.77 0.00 0.00 2.78
339 340 4.328536 TGTATTGTTGTATGGCCGTTTCT 58.671 39.130 0.77 0.00 0.00 2.52
340 341 5.489249 TGTATTGTTGTATGGCCGTTTCTA 58.511 37.500 0.77 0.00 0.00 2.10
341 342 6.116806 TGTATTGTTGTATGGCCGTTTCTAT 58.883 36.000 0.77 0.00 0.00 1.98
342 343 7.273712 TGTATTGTTGTATGGCCGTTTCTATA 58.726 34.615 0.77 0.00 0.00 1.31
343 344 7.769507 TGTATTGTTGTATGGCCGTTTCTATAA 59.230 33.333 0.77 0.00 0.00 0.98
344 345 7.633193 ATTGTTGTATGGCCGTTTCTATAAA 57.367 32.000 0.77 0.00 0.00 1.40
345 346 7.633193 TTGTTGTATGGCCGTTTCTATAAAT 57.367 32.000 0.77 0.00 0.00 1.40
346 347 7.633193 TGTTGTATGGCCGTTTCTATAAATT 57.367 32.000 0.77 0.00 0.00 1.82
347 348 7.476667 TGTTGTATGGCCGTTTCTATAAATTG 58.523 34.615 0.77 0.00 0.00 2.32
348 349 6.067263 TGTATGGCCGTTTCTATAAATTGC 57.933 37.500 0.77 0.00 0.00 3.56
349 350 5.825679 TGTATGGCCGTTTCTATAAATTGCT 59.174 36.000 0.77 0.00 0.00 3.91
350 351 5.852282 ATGGCCGTTTCTATAAATTGCTT 57.148 34.783 0.00 0.00 0.00 3.91
351 352 5.652994 TGGCCGTTTCTATAAATTGCTTT 57.347 34.783 0.00 0.00 0.00 3.51
352 353 6.761099 TGGCCGTTTCTATAAATTGCTTTA 57.239 33.333 0.00 0.00 0.00 1.85
353 354 7.341445 TGGCCGTTTCTATAAATTGCTTTAT 57.659 32.000 0.00 0.00 40.04 1.40
354 355 7.422399 TGGCCGTTTCTATAAATTGCTTTATC 58.578 34.615 0.00 0.00 38.30 1.75
355 356 7.284489 TGGCCGTTTCTATAAATTGCTTTATCT 59.716 33.333 0.00 0.00 38.30 1.98
356 357 7.803659 GGCCGTTTCTATAAATTGCTTTATCTC 59.196 37.037 0.00 0.00 38.30 2.75
357 358 7.530861 GCCGTTTCTATAAATTGCTTTATCTCG 59.469 37.037 0.00 0.00 38.30 4.04
358 359 8.548721 CCGTTTCTATAAATTGCTTTATCTCGT 58.451 33.333 0.00 0.00 38.30 4.18
359 360 9.358123 CGTTTCTATAAATTGCTTTATCTCGTG 57.642 33.333 0.00 0.00 38.30 4.35
362 363 8.282124 TCTATAAATTGCTTTATCTCGTGTCG 57.718 34.615 0.00 0.00 38.30 4.35
363 364 3.658351 AATTGCTTTATCTCGTGTCGC 57.342 42.857 0.00 0.00 0.00 5.19
364 365 1.355971 TTGCTTTATCTCGTGTCGCC 58.644 50.000 0.00 0.00 0.00 5.54
365 366 0.800683 TGCTTTATCTCGTGTCGCCG 60.801 55.000 0.00 0.00 0.00 6.46
366 367 0.801067 GCTTTATCTCGTGTCGCCGT 60.801 55.000 0.00 0.00 0.00 5.68
367 368 1.532505 GCTTTATCTCGTGTCGCCGTA 60.533 52.381 0.00 0.00 0.00 4.02
368 369 2.857489 GCTTTATCTCGTGTCGCCGTAT 60.857 50.000 0.00 0.00 0.00 3.06
369 370 2.675767 TTATCTCGTGTCGCCGTATC 57.324 50.000 0.00 0.00 0.00 2.24
370 371 0.509929 TATCTCGTGTCGCCGTATCG 59.490 55.000 0.00 0.00 0.00 2.92
381 382 3.159446 CCGTATCGGTGCTTCGTAG 57.841 57.895 0.00 0.00 42.73 3.51
382 383 0.317603 CCGTATCGGTGCTTCGTAGG 60.318 60.000 0.00 0.00 42.73 3.18
383 384 0.379669 CGTATCGGTGCTTCGTAGGT 59.620 55.000 0.00 0.00 0.00 3.08
384 385 1.599071 CGTATCGGTGCTTCGTAGGTA 59.401 52.381 0.00 0.00 0.00 3.08
385 386 2.600792 CGTATCGGTGCTTCGTAGGTAC 60.601 54.545 0.00 0.00 0.00 3.34
400 401 5.764487 GTAGGTACGAGCTACTTTGGTAT 57.236 43.478 13.47 0.00 43.69 2.73
401 402 6.141560 GTAGGTACGAGCTACTTTGGTATT 57.858 41.667 13.47 0.00 43.69 1.89
402 403 5.007385 AGGTACGAGCTACTTTGGTATTG 57.993 43.478 0.00 0.00 0.00 1.90
403 404 3.554731 GGTACGAGCTACTTTGGTATTGC 59.445 47.826 0.00 0.00 0.00 3.56
404 405 3.328382 ACGAGCTACTTTGGTATTGCA 57.672 42.857 0.00 0.00 0.00 4.08
405 406 3.873910 ACGAGCTACTTTGGTATTGCAT 58.126 40.909 0.00 0.00 0.00 3.96
406 407 3.871594 ACGAGCTACTTTGGTATTGCATC 59.128 43.478 0.00 0.00 0.00 3.91
407 408 3.871006 CGAGCTACTTTGGTATTGCATCA 59.129 43.478 0.00 0.00 0.00 3.07
408 409 4.512944 CGAGCTACTTTGGTATTGCATCAT 59.487 41.667 0.00 0.00 0.00 2.45
409 410 5.696270 CGAGCTACTTTGGTATTGCATCATA 59.304 40.000 0.00 0.00 0.00 2.15
410 411 6.346919 CGAGCTACTTTGGTATTGCATCATAC 60.347 42.308 0.61 0.61 0.00 2.39
411 412 6.356556 AGCTACTTTGGTATTGCATCATACA 58.643 36.000 10.04 0.00 0.00 2.29
412 413 7.000472 AGCTACTTTGGTATTGCATCATACAT 59.000 34.615 10.04 0.00 0.00 2.29
413 414 7.173907 AGCTACTTTGGTATTGCATCATACATC 59.826 37.037 10.04 0.00 0.00 3.06
414 415 7.173907 GCTACTTTGGTATTGCATCATACATCT 59.826 37.037 10.04 0.00 0.00 2.90
415 416 7.886629 ACTTTGGTATTGCATCATACATCTT 57.113 32.000 10.04 0.00 0.00 2.40
416 417 8.297470 ACTTTGGTATTGCATCATACATCTTT 57.703 30.769 10.04 0.00 0.00 2.52
417 418 8.752187 ACTTTGGTATTGCATCATACATCTTTT 58.248 29.630 10.04 0.00 0.00 2.27
421 422 9.013229 TGGTATTGCATCATACATCTTTTATCC 57.987 33.333 10.04 0.00 0.00 2.59
422 423 9.236006 GGTATTGCATCATACATCTTTTATCCT 57.764 33.333 10.04 0.00 0.00 3.24
432 433 9.197694 CATACATCTTTTATCCTTTAGAGTCCG 57.802 37.037 0.00 0.00 0.00 4.79
433 434 6.049790 ACATCTTTTATCCTTTAGAGTCCGC 58.950 40.000 0.00 0.00 0.00 5.54
434 435 5.019785 TCTTTTATCCTTTAGAGTCCGCC 57.980 43.478 0.00 0.00 0.00 6.13
435 436 3.832615 TTTATCCTTTAGAGTCCGCCC 57.167 47.619 0.00 0.00 0.00 6.13
436 437 1.713297 TATCCTTTAGAGTCCGCCCC 58.287 55.000 0.00 0.00 0.00 5.80
437 438 0.326238 ATCCTTTAGAGTCCGCCCCA 60.326 55.000 0.00 0.00 0.00 4.96
438 439 1.221021 CCTTTAGAGTCCGCCCCAC 59.779 63.158 0.00 0.00 0.00 4.61
439 440 1.221021 CTTTAGAGTCCGCCCCACC 59.779 63.158 0.00 0.00 0.00 4.61
440 441 1.229400 TTTAGAGTCCGCCCCACCT 60.229 57.895 0.00 0.00 0.00 4.00
441 442 1.262640 TTTAGAGTCCGCCCCACCTC 61.263 60.000 0.00 0.00 0.00 3.85
442 443 2.449967 TTAGAGTCCGCCCCACCTCA 62.450 60.000 0.00 0.00 0.00 3.86
443 444 2.449967 TAGAGTCCGCCCCACCTCAA 62.450 60.000 0.00 0.00 0.00 3.02
444 445 2.610859 AGTCCGCCCCACCTCAAT 60.611 61.111 0.00 0.00 0.00 2.57
445 446 2.198304 GAGTCCGCCCCACCTCAATT 62.198 60.000 0.00 0.00 0.00 2.32
446 447 1.304134 GTCCGCCCCACCTCAATTT 60.304 57.895 0.00 0.00 0.00 1.82
447 448 0.898326 GTCCGCCCCACCTCAATTTT 60.898 55.000 0.00 0.00 0.00 1.82
448 449 0.178947 TCCGCCCCACCTCAATTTTT 60.179 50.000 0.00 0.00 0.00 1.94
449 450 1.075698 TCCGCCCCACCTCAATTTTTA 59.924 47.619 0.00 0.00 0.00 1.52
450 451 1.203758 CCGCCCCACCTCAATTTTTAC 59.796 52.381 0.00 0.00 0.00 2.01
451 452 1.203758 CGCCCCACCTCAATTTTTACC 59.796 52.381 0.00 0.00 0.00 2.85
452 453 1.553248 GCCCCACCTCAATTTTTACCC 59.447 52.381 0.00 0.00 0.00 3.69
453 454 1.822371 CCCCACCTCAATTTTTACCCG 59.178 52.381 0.00 0.00 0.00 5.28
454 455 2.521126 CCCACCTCAATTTTTACCCGT 58.479 47.619 0.00 0.00 0.00 5.28
455 456 2.490509 CCCACCTCAATTTTTACCCGTC 59.509 50.000 0.00 0.00 0.00 4.79
456 457 3.150767 CCACCTCAATTTTTACCCGTCA 58.849 45.455 0.00 0.00 0.00 4.35
457 458 3.761752 CCACCTCAATTTTTACCCGTCAT 59.238 43.478 0.00 0.00 0.00 3.06
458 459 4.142469 CCACCTCAATTTTTACCCGTCATC 60.142 45.833 0.00 0.00 0.00 2.92
459 460 3.687698 ACCTCAATTTTTACCCGTCATCG 59.312 43.478 0.00 0.00 0.00 3.84
475 476 2.824041 CGGCCACCGGATCCAAAG 60.824 66.667 9.46 1.93 44.15 2.77
476 477 3.140814 GGCCACCGGATCCAAAGC 61.141 66.667 9.46 8.48 0.00 3.51
477 478 2.361104 GCCACCGGATCCAAAGCA 60.361 61.111 9.46 0.00 0.00 3.91
478 479 2.409870 GCCACCGGATCCAAAGCAG 61.410 63.158 9.46 0.00 0.00 4.24
479 480 1.002134 CCACCGGATCCAAAGCAGT 60.002 57.895 9.46 0.00 0.00 4.40
480 481 0.251916 CCACCGGATCCAAAGCAGTA 59.748 55.000 9.46 0.00 0.00 2.74
481 482 1.656652 CACCGGATCCAAAGCAGTAG 58.343 55.000 9.46 0.00 0.00 2.57
482 483 0.541863 ACCGGATCCAAAGCAGTAGG 59.458 55.000 9.46 3.69 0.00 3.18
483 484 0.541863 CCGGATCCAAAGCAGTAGGT 59.458 55.000 13.41 0.00 0.00 3.08
484 485 1.473434 CCGGATCCAAAGCAGTAGGTC 60.473 57.143 13.41 0.00 0.00 3.85
485 486 1.802880 CGGATCCAAAGCAGTAGGTCG 60.803 57.143 13.41 0.00 0.00 4.79
486 487 1.480954 GGATCCAAAGCAGTAGGTCGA 59.519 52.381 6.95 0.00 0.00 4.20
487 488 2.093658 GGATCCAAAGCAGTAGGTCGAA 60.094 50.000 6.95 0.00 0.00 3.71
488 489 3.596214 GATCCAAAGCAGTAGGTCGAAA 58.404 45.455 0.00 0.00 0.00 3.46
489 490 3.040147 TCCAAAGCAGTAGGTCGAAAG 57.960 47.619 0.00 0.00 0.00 2.62
490 491 1.464997 CCAAAGCAGTAGGTCGAAAGC 59.535 52.381 0.00 0.00 0.00 3.51
513 514 3.244875 TGAGGCTAAATCTTGTGAGGCAA 60.245 43.478 0.00 0.00 36.97 4.52
604 612 3.785486 TGAACTAATGATGCAGTCCTCG 58.215 45.455 0.00 0.00 0.00 4.63
719 735 4.065789 GTGACTTCCCTTGACAAACTAGG 58.934 47.826 0.00 0.00 40.33 3.02
786 812 0.949105 GTGTACTTGTCACTGGGCCG 60.949 60.000 0.00 0.00 33.59 6.13
794 820 2.105128 CACTGGGCCGAGTCGATC 59.895 66.667 18.72 5.12 0.00 3.69
807 833 0.870393 GTCGATCAGTCGGCCGTATA 59.130 55.000 27.15 9.92 46.35 1.47
810 836 3.125829 GTCGATCAGTCGGCCGTATATAA 59.874 47.826 27.15 0.06 46.35 0.98
812 838 4.669318 CGATCAGTCGGCCGTATATAAAT 58.331 43.478 27.15 10.65 44.00 1.40
884 918 2.581354 GCCGGCAGAGTGATCACT 59.419 61.111 28.23 28.23 45.84 3.41
921 955 0.679321 GCCTGCTTCTCCTCCTTTGG 60.679 60.000 0.00 0.00 0.00 3.28
969 1019 1.202698 AGCCTCTTTCGCTCAACTGTT 60.203 47.619 0.00 0.00 0.00 3.16
970 1020 2.037251 AGCCTCTTTCGCTCAACTGTTA 59.963 45.455 0.00 0.00 0.00 2.41
971 1021 2.806244 GCCTCTTTCGCTCAACTGTTAA 59.194 45.455 0.00 0.00 0.00 2.01
972 1022 3.364068 GCCTCTTTCGCTCAACTGTTAAC 60.364 47.826 0.00 0.00 0.00 2.01
973 1023 3.186613 CCTCTTTCGCTCAACTGTTAACC 59.813 47.826 2.48 0.00 0.00 2.85
974 1024 3.135994 TCTTTCGCTCAACTGTTAACCC 58.864 45.455 2.48 0.00 0.00 4.11
975 1025 1.504359 TTCGCTCAACTGTTAACCCG 58.496 50.000 2.48 0.00 0.00 5.28
976 1026 0.320073 TCGCTCAACTGTTAACCCGG 60.320 55.000 2.48 0.00 0.00 5.73
977 1027 1.873863 GCTCAACTGTTAACCCGGC 59.126 57.895 2.48 0.00 0.00 6.13
978 1028 1.908066 GCTCAACTGTTAACCCGGCG 61.908 60.000 0.00 0.00 0.00 6.46
979 1029 0.320073 CTCAACTGTTAACCCGGCGA 60.320 55.000 9.30 0.00 0.00 5.54
980 1030 0.320073 TCAACTGTTAACCCGGCGAG 60.320 55.000 9.30 0.00 0.00 5.03
981 1031 1.004200 AACTGTTAACCCGGCGAGG 60.004 57.895 9.30 11.01 40.63 4.63
982 1032 2.818274 CTGTTAACCCGGCGAGGC 60.818 66.667 9.30 0.00 39.21 4.70
983 1033 3.310860 CTGTTAACCCGGCGAGGCT 62.311 63.158 9.30 1.52 39.21 4.58
1032 1085 0.596082 TTCGTGTCATGCTCGTCTCA 59.404 50.000 10.01 0.00 35.78 3.27
1033 1086 0.169009 TCGTGTCATGCTCGTCTCAG 59.831 55.000 10.01 0.00 35.78 3.35
1034 1087 1.409227 CGTGTCATGCTCGTCTCAGC 61.409 60.000 0.00 0.00 40.13 4.26
1035 1088 0.108898 GTGTCATGCTCGTCTCAGCT 60.109 55.000 0.00 0.00 40.39 4.24
1044 1097 0.676184 TCGTCTCAGCTGTGCTCTTT 59.324 50.000 14.67 0.00 36.40 2.52
1386 1452 0.164002 GCGCCACTTCTTCTTCGTTC 59.836 55.000 0.00 0.00 0.00 3.95
1394 1460 2.431942 TTCTTCGTTCTCCGCGGC 60.432 61.111 23.51 5.12 36.19 6.53
1395 1461 3.927163 TTCTTCGTTCTCCGCGGCC 62.927 63.158 23.51 7.09 36.19 6.13
1485 1557 2.732016 CAGTCGTTCGACCACCCA 59.268 61.111 19.41 0.00 35.90 4.51
1662 1734 1.069378 GCGACGTCAAGAAGTACCGG 61.069 60.000 17.16 0.00 0.00 5.28
2121 2205 1.374758 CGTGAAGCTCCCTGACACC 60.375 63.158 0.00 0.00 0.00 4.16
2372 2716 1.133699 TGGATGGATCATCTTGCCCAC 60.134 52.381 7.68 0.00 40.39 4.61
2373 2717 1.133699 GGATGGATCATCTTGCCCACA 60.134 52.381 7.68 0.00 40.39 4.17
2376 2720 1.634973 TGGATCATCTTGCCCACAGAA 59.365 47.619 0.00 0.00 0.00 3.02
2378 2722 3.294214 GGATCATCTTGCCCACAGAATT 58.706 45.455 0.00 0.00 0.00 2.17
2380 2724 4.889409 GGATCATCTTGCCCACAGAATTAA 59.111 41.667 0.00 0.00 0.00 1.40
2381 2725 5.221126 GGATCATCTTGCCCACAGAATTAAC 60.221 44.000 0.00 0.00 0.00 2.01
2382 2726 4.016444 TCATCTTGCCCACAGAATTAACC 58.984 43.478 0.00 0.00 0.00 2.85
2385 2729 3.572255 TCTTGCCCACAGAATTAACCAAC 59.428 43.478 0.00 0.00 0.00 3.77
2386 2730 2.950781 TGCCCACAGAATTAACCAACA 58.049 42.857 0.00 0.00 0.00 3.33
2389 2777 5.080337 TGCCCACAGAATTAACCAACAATA 58.920 37.500 0.00 0.00 0.00 1.90
2420 2808 8.443160 TGTGATGTCTCTTCGTGAAATTTATTC 58.557 33.333 0.00 0.00 0.00 1.75
2441 2829 9.872721 TTATTCGGTCATGTATAACTGTTTGTA 57.127 29.630 0.00 0.00 0.00 2.41
2492 2880 5.780793 TGCTAATAAGAAGAGGGGGAGTATC 59.219 44.000 0.00 0.00 0.00 2.24
2512 2900 5.573337 ATCTTGAAGATTTTGCTACCAGC 57.427 39.130 0.97 0.00 34.70 4.85
2516 2904 2.887151 AGATTTTGCTACCAGCCACT 57.113 45.000 0.00 0.00 41.51 4.00
2587 2991 5.934625 GCAAGTTCAGAGGTAGAATTTCAGA 59.065 40.000 0.00 0.00 0.00 3.27
2593 2997 6.111382 TCAGAGGTAGAATTTCAGAATGCAG 58.889 40.000 0.00 0.00 34.76 4.41
2596 3000 7.010923 CAGAGGTAGAATTTCAGAATGCAGTAC 59.989 40.741 0.00 0.00 34.76 2.73
2612 3016 3.675698 GCAGTACTGTTGTAGCACTTCTC 59.324 47.826 23.44 0.00 30.36 2.87
2613 3017 4.238514 CAGTACTGTTGTAGCACTTCTCC 58.761 47.826 15.06 0.00 30.36 3.71
2619 3023 3.570975 TGTTGTAGCACTTCTCCGAACTA 59.429 43.478 0.00 0.00 0.00 2.24
2623 4457 5.005740 TGTAGCACTTCTCCGAACTACTAA 58.994 41.667 0.00 0.00 32.98 2.24
2651 4485 7.147976 ACAAACAATATTTCAACTCTTCCTGC 58.852 34.615 0.00 0.00 0.00 4.85
2670 4504 1.068474 CTAGGCAACCGTCGAAACAG 58.932 55.000 0.00 0.00 37.17 3.16
2696 4530 2.973945 ACCAGGCAAAGTCGATTCTAC 58.026 47.619 0.00 0.00 0.00 2.59
2698 4532 1.927174 CAGGCAAAGTCGATTCTACGG 59.073 52.381 0.00 0.00 0.00 4.02
2749 4583 5.066375 TGAAAATATCGAGCTTCCATTGGTG 59.934 40.000 1.86 0.00 0.00 4.17
2757 4591 1.888512 GCTTCCATTGGTGAGCTTCAA 59.111 47.619 19.65 0.00 33.03 2.69
2768 4602 4.202040 TGGTGAGCTTCAAAGACATTGTTG 60.202 41.667 0.00 0.00 40.11 3.33
2880 4715 5.363101 AGGTGTATAAGATGCACATGACAG 58.637 41.667 0.00 0.00 46.01 3.51
2906 4743 3.949754 TCTTGCCCAGCTTAAGAATGATG 59.050 43.478 6.67 0.81 0.00 3.07
3210 5077 4.201734 TGCATACTTATAACAACGTTGCGG 60.202 41.667 27.61 13.23 0.00 5.69
3215 5083 4.622740 ACTTATAACAACGTTGCGGTACTC 59.377 41.667 27.61 0.00 0.00 2.59
3469 5338 4.621460 CGAGTTGTTGGTACATAGTGAGTG 59.379 45.833 0.00 0.00 39.30 3.51
3943 5852 4.951254 TCATGTTAGAGAACGAAACCACA 58.049 39.130 0.00 0.00 38.51 4.17
3955 5864 3.754323 ACGAAACCACAGAACTTTCAACA 59.246 39.130 0.00 0.00 0.00 3.33
4127 6047 7.709269 TTTCAGTCATGTACTTCACTGTAAC 57.291 36.000 11.64 0.00 35.76 2.50
4197 6117 2.293399 AGGTTGTTCGGTTGAAGCAATC 59.707 45.455 0.00 0.00 33.98 2.67
4281 6201 4.695455 ACACGGTTAATCTTTGACATCCAG 59.305 41.667 0.00 0.00 0.00 3.86
4286 6206 5.183904 GGTTAATCTTTGACATCCAGCACTT 59.816 40.000 0.00 0.00 0.00 3.16
4287 6207 6.317857 GTTAATCTTTGACATCCAGCACTTC 58.682 40.000 0.00 0.00 0.00 3.01
4315 6235 3.165875 TCTTCGTCTCCATCAAGGTTCT 58.834 45.455 0.00 0.00 39.02 3.01
4607 6527 3.422796 GCTCTCCATCTATAACCCTCGA 58.577 50.000 0.00 0.00 0.00 4.04
4611 6531 4.351407 TCTCCATCTATAACCCTCGACTCT 59.649 45.833 0.00 0.00 0.00 3.24
4717 6637 1.949525 CACACAGGAGTCCAACAAAGG 59.050 52.381 12.86 0.00 0.00 3.11
4743 6663 1.952193 TGGCATCGTACCACATCATG 58.048 50.000 0.00 0.00 30.29 3.07
4752 6672 1.527611 CCACATCATGGGCATCGCT 60.528 57.895 0.00 0.00 45.95 4.93
4794 6714 7.572953 CCTTGAGGAAAAGATGGGATGACCA 62.573 48.000 0.00 0.00 46.64 4.02
4810 6730 4.868172 TGACCATCATGGGAGATCTTTT 57.132 40.909 9.04 0.00 43.37 2.27
4919 6839 4.461431 TCATACGTGTCTACACATGGAACT 59.539 41.667 13.30 0.00 46.75 3.01
4975 6895 4.133078 CTCTCCATCCCAAGCAATAAGAC 58.867 47.826 0.00 0.00 0.00 3.01
4976 6896 3.523157 TCTCCATCCCAAGCAATAAGACA 59.477 43.478 0.00 0.00 0.00 3.41
5026 6946 8.006298 TGACCACAATTTAGACAACTCAAATT 57.994 30.769 0.00 0.00 33.31 1.82
5031 6951 7.710475 CACAATTTAGACAACTCAAATTTGGGT 59.290 33.333 18.17 18.17 45.58 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.509517 CGGATGTGTGTAATACAAGAATTCCG 60.510 42.308 14.19 14.19 42.67 4.30
2 3 7.303634 ACGGATGTGTGTAATACAAGAATTC 57.696 36.000 0.00 0.00 42.67 2.17
4 5 5.518847 CGACGGATGTGTGTAATACAAGAAT 59.481 40.000 0.00 0.00 42.67 2.40
5 6 4.860352 CGACGGATGTGTGTAATACAAGAA 59.140 41.667 0.00 0.00 42.67 2.52
7 8 4.171005 ACGACGGATGTGTGTAATACAAG 58.829 43.478 0.00 0.00 42.67 3.16
8 9 4.177165 ACGACGGATGTGTGTAATACAA 57.823 40.909 0.00 0.00 42.67 2.41
9 10 3.853831 ACGACGGATGTGTGTAATACA 57.146 42.857 0.00 0.00 43.86 2.29
10 11 3.727723 GCTACGACGGATGTGTGTAATAC 59.272 47.826 0.00 0.00 0.00 1.89
11 12 3.243168 GGCTACGACGGATGTGTGTAATA 60.243 47.826 0.00 0.00 0.00 0.98
12 13 2.480759 GGCTACGACGGATGTGTGTAAT 60.481 50.000 0.00 0.00 0.00 1.89
13 14 1.135315 GGCTACGACGGATGTGTGTAA 60.135 52.381 0.00 0.00 0.00 2.41
14 15 0.452987 GGCTACGACGGATGTGTGTA 59.547 55.000 0.00 0.00 0.00 2.90
15 16 1.214589 GGCTACGACGGATGTGTGT 59.785 57.895 0.00 0.00 0.00 3.72
16 17 0.389296 TTGGCTACGACGGATGTGTG 60.389 55.000 0.00 0.00 0.00 3.82
17 18 0.319083 TTTGGCTACGACGGATGTGT 59.681 50.000 0.00 0.00 0.00 3.72
18 19 1.434555 TTTTGGCTACGACGGATGTG 58.565 50.000 0.00 0.00 0.00 3.21
19 20 2.396590 ATTTTGGCTACGACGGATGT 57.603 45.000 0.00 0.00 0.00 3.06
20 21 4.772434 CAATATTTTGGCTACGACGGATG 58.228 43.478 0.00 0.00 0.00 3.51
21 22 3.250040 GCAATATTTTGGCTACGACGGAT 59.750 43.478 0.00 0.00 33.22 4.18
22 23 2.610374 GCAATATTTTGGCTACGACGGA 59.390 45.455 0.00 0.00 33.22 4.69
23 24 2.612212 AGCAATATTTTGGCTACGACGG 59.388 45.455 0.00 0.00 33.22 4.79
24 25 3.944422 AGCAATATTTTGGCTACGACG 57.056 42.857 0.00 0.00 33.22 5.12
25 26 4.319549 GGCTAGCAATATTTTGGCTACGAC 60.320 45.833 18.24 0.00 33.22 4.34
26 27 3.813166 GGCTAGCAATATTTTGGCTACGA 59.187 43.478 18.24 0.00 33.22 3.43
27 28 3.563808 TGGCTAGCAATATTTTGGCTACG 59.436 43.478 18.24 2.09 33.22 3.51
28 29 4.580580 AGTGGCTAGCAATATTTTGGCTAC 59.419 41.667 18.24 11.19 32.82 3.58
29 30 4.792068 AGTGGCTAGCAATATTTTGGCTA 58.208 39.130 18.24 6.00 33.22 3.93
30 31 3.635591 AGTGGCTAGCAATATTTTGGCT 58.364 40.909 18.24 4.40 33.22 4.75
31 32 5.712152 ATAGTGGCTAGCAATATTTTGGC 57.288 39.130 18.24 0.00 33.22 4.52
32 33 7.765307 CCATATAGTGGCTAGCAATATTTTGG 58.235 38.462 18.24 15.53 42.12 3.28
48 49 7.285401 AGTCCTACCAAAATTTGCCATATAGTG 59.715 37.037 0.00 0.00 0.00 2.74
49 50 7.354312 AGTCCTACCAAAATTTGCCATATAGT 58.646 34.615 0.00 0.00 0.00 2.12
50 51 7.823745 AGTCCTACCAAAATTTGCCATATAG 57.176 36.000 0.00 0.00 0.00 1.31
51 52 8.499406 ACTAGTCCTACCAAAATTTGCCATATA 58.501 33.333 0.00 0.00 0.00 0.86
52 53 7.285401 CACTAGTCCTACCAAAATTTGCCATAT 59.715 37.037 0.00 0.00 0.00 1.78
53 54 6.601613 CACTAGTCCTACCAAAATTTGCCATA 59.398 38.462 0.00 0.00 0.00 2.74
54 55 5.418840 CACTAGTCCTACCAAAATTTGCCAT 59.581 40.000 0.00 0.00 0.00 4.40
55 56 4.764823 CACTAGTCCTACCAAAATTTGCCA 59.235 41.667 0.00 0.00 0.00 4.92
56 57 4.157840 CCACTAGTCCTACCAAAATTTGCC 59.842 45.833 0.00 0.00 0.00 4.52
57 58 5.007682 TCCACTAGTCCTACCAAAATTTGC 58.992 41.667 0.00 0.00 0.00 3.68
58 59 5.121768 CGTCCACTAGTCCTACCAAAATTTG 59.878 44.000 0.00 0.00 0.00 2.32
59 60 5.221783 ACGTCCACTAGTCCTACCAAAATTT 60.222 40.000 0.00 0.00 0.00 1.82
60 61 4.285260 ACGTCCACTAGTCCTACCAAAATT 59.715 41.667 0.00 0.00 0.00 1.82
61 62 3.836562 ACGTCCACTAGTCCTACCAAAAT 59.163 43.478 0.00 0.00 0.00 1.82
62 63 3.233507 ACGTCCACTAGTCCTACCAAAA 58.766 45.455 0.00 0.00 0.00 2.44
63 64 2.880443 ACGTCCACTAGTCCTACCAAA 58.120 47.619 0.00 0.00 0.00 3.28
64 65 2.592102 ACGTCCACTAGTCCTACCAA 57.408 50.000 0.00 0.00 0.00 3.67
65 66 2.677902 CGTACGTCCACTAGTCCTACCA 60.678 54.545 7.22 0.00 0.00 3.25
66 67 1.936547 CGTACGTCCACTAGTCCTACC 59.063 57.143 7.22 0.00 0.00 3.18
67 68 1.936547 CCGTACGTCCACTAGTCCTAC 59.063 57.143 15.21 0.00 0.00 3.18
68 69 1.743772 GCCGTACGTCCACTAGTCCTA 60.744 57.143 15.21 0.00 0.00 2.94
69 70 1.028868 GCCGTACGTCCACTAGTCCT 61.029 60.000 15.21 0.00 0.00 3.85
70 71 1.028868 AGCCGTACGTCCACTAGTCC 61.029 60.000 15.21 0.00 0.00 3.85
71 72 0.098376 CAGCCGTACGTCCACTAGTC 59.902 60.000 15.21 0.00 0.00 2.59
72 73 0.607489 ACAGCCGTACGTCCACTAGT 60.607 55.000 15.21 0.00 0.00 2.57
73 74 0.098376 GACAGCCGTACGTCCACTAG 59.902 60.000 15.21 0.00 0.00 2.57
74 75 0.321919 AGACAGCCGTACGTCCACTA 60.322 55.000 15.21 0.00 32.33 2.74
75 76 1.602888 AGACAGCCGTACGTCCACT 60.603 57.895 15.21 3.04 32.33 4.00
76 77 1.443872 CAGACAGCCGTACGTCCAC 60.444 63.158 15.21 0.54 32.33 4.02
77 78 2.632544 CCAGACAGCCGTACGTCCA 61.633 63.158 15.21 0.00 32.33 4.02
78 79 2.181021 CCAGACAGCCGTACGTCC 59.819 66.667 15.21 4.76 32.33 4.79
79 80 2.488087 AAGCCAGACAGCCGTACGTC 62.488 60.000 15.21 0.00 0.00 4.34
80 81 2.571216 AAGCCAGACAGCCGTACGT 61.571 57.895 15.21 0.00 0.00 3.57
81 82 2.094659 CAAGCCAGACAGCCGTACG 61.095 63.158 8.69 8.69 0.00 3.67
82 83 1.741770 CCAAGCCAGACAGCCGTAC 60.742 63.158 0.00 0.00 0.00 3.67
83 84 1.764571 AACCAAGCCAGACAGCCGTA 61.765 55.000 0.00 0.00 0.00 4.02
84 85 3.120086 AACCAAGCCAGACAGCCGT 62.120 57.895 0.00 0.00 0.00 5.68
85 86 2.281761 AACCAAGCCAGACAGCCG 60.282 61.111 0.00 0.00 0.00 5.52
86 87 1.973812 GGAACCAAGCCAGACAGCC 60.974 63.158 0.00 0.00 0.00 4.85
87 88 1.228245 TGGAACCAAGCCAGACAGC 60.228 57.895 0.00 0.00 0.00 4.40
88 89 0.179020 TGTGGAACCAAGCCAGACAG 60.179 55.000 0.00 0.00 35.77 3.51
89 90 0.465460 GTGTGGAACCAAGCCAGACA 60.465 55.000 0.00 0.00 45.94 3.41
90 91 2.331265 GTGTGGAACCAAGCCAGAC 58.669 57.895 0.00 0.00 41.60 3.51
91 92 4.898607 GTGTGGAACCAAGCCAGA 57.101 55.556 0.00 0.00 35.77 3.86
103 104 2.184322 CGATGTCCTCCGGTGTGG 59.816 66.667 0.00 2.66 40.09 4.17
104 105 1.446099 CACGATGTCCTCCGGTGTG 60.446 63.158 0.00 0.00 0.00 3.82
105 106 1.183030 TTCACGATGTCCTCCGGTGT 61.183 55.000 0.00 0.00 0.00 4.16
106 107 0.175760 ATTCACGATGTCCTCCGGTG 59.824 55.000 0.00 0.00 0.00 4.94
107 108 0.175760 CATTCACGATGTCCTCCGGT 59.824 55.000 0.00 0.00 0.00 5.28
108 109 0.175760 ACATTCACGATGTCCTCCGG 59.824 55.000 0.00 0.00 45.88 5.14
109 110 3.741029 ACATTCACGATGTCCTCCG 57.259 52.632 0.00 0.00 45.88 4.63
116 117 3.658988 CACGTTCACAAACATTCACGATG 59.341 43.478 0.00 0.00 41.71 3.84
117 118 3.558006 TCACGTTCACAAACATTCACGAT 59.442 39.130 0.00 0.00 34.93 3.73
118 119 2.930682 TCACGTTCACAAACATTCACGA 59.069 40.909 0.00 0.00 34.93 4.35
119 120 3.311788 TCACGTTCACAAACATTCACG 57.688 42.857 0.00 0.00 34.93 4.35
120 121 5.034152 ACAATCACGTTCACAAACATTCAC 58.966 37.500 0.00 0.00 34.93 3.18
121 122 5.242069 ACAATCACGTTCACAAACATTCA 57.758 34.783 0.00 0.00 34.93 2.57
122 123 7.060633 GGATTACAATCACGTTCACAAACATTC 59.939 37.037 4.45 0.00 37.15 2.67
123 124 6.861055 GGATTACAATCACGTTCACAAACATT 59.139 34.615 4.45 0.00 37.15 2.71
124 125 6.378582 GGATTACAATCACGTTCACAAACAT 58.621 36.000 4.45 0.00 37.15 2.71
125 126 5.278071 GGGATTACAATCACGTTCACAAACA 60.278 40.000 4.45 0.00 37.15 2.83
126 127 5.048991 AGGGATTACAATCACGTTCACAAAC 60.049 40.000 4.45 0.00 43.60 2.93
127 128 5.067273 AGGGATTACAATCACGTTCACAAA 58.933 37.500 4.45 0.00 43.60 2.83
128 129 4.647611 AGGGATTACAATCACGTTCACAA 58.352 39.130 4.45 0.00 43.60 3.33
129 130 4.280436 AGGGATTACAATCACGTTCACA 57.720 40.909 4.45 0.00 43.60 3.58
130 131 6.370718 ACTTTAGGGATTACAATCACGTTCAC 59.629 38.462 4.45 0.00 43.60 3.18
131 132 6.469410 ACTTTAGGGATTACAATCACGTTCA 58.531 36.000 4.45 0.00 43.60 3.18
132 133 6.980051 ACTTTAGGGATTACAATCACGTTC 57.020 37.500 4.45 0.00 43.60 3.95
133 134 7.664318 AGAAACTTTAGGGATTACAATCACGTT 59.336 33.333 4.45 0.00 43.60 3.99
134 135 7.119262 CAGAAACTTTAGGGATTACAATCACGT 59.881 37.037 4.45 0.00 43.60 4.49
135 136 7.119262 ACAGAAACTTTAGGGATTACAATCACG 59.881 37.037 4.45 0.00 43.60 4.35
136 137 8.237267 CACAGAAACTTTAGGGATTACAATCAC 58.763 37.037 4.45 0.21 39.14 3.06
137 138 7.942341 ACACAGAAACTTTAGGGATTACAATCA 59.058 33.333 4.45 0.00 37.15 2.57
138 139 8.336801 ACACAGAAACTTTAGGGATTACAATC 57.663 34.615 0.00 0.00 34.66 2.67
139 140 9.802039 TTACACAGAAACTTTAGGGATTACAAT 57.198 29.630 0.00 0.00 0.00 2.71
140 141 9.802039 ATTACACAGAAACTTTAGGGATTACAA 57.198 29.630 0.00 0.00 0.00 2.41
144 145 9.802039 TTGTATTACACAGAAACTTTAGGGATT 57.198 29.630 0.00 0.00 38.72 3.01
145 146 9.449719 CTTGTATTACACAGAAACTTTAGGGAT 57.550 33.333 0.00 0.00 38.72 3.85
146 147 8.653191 TCTTGTATTACACAGAAACTTTAGGGA 58.347 33.333 0.00 0.00 38.72 4.20
147 148 8.842358 TCTTGTATTACACAGAAACTTTAGGG 57.158 34.615 0.00 0.00 38.72 3.53
148 149 9.490379 ACTCTTGTATTACACAGAAACTTTAGG 57.510 33.333 8.37 0.69 38.72 2.69
156 157 8.653338 GCGAAATAACTCTTGTATTACACAGAA 58.347 33.333 8.37 0.00 38.72 3.02
157 158 7.815549 TGCGAAATAACTCTTGTATTACACAGA 59.184 33.333 8.37 8.08 38.72 3.41
158 159 7.959733 TGCGAAATAACTCTTGTATTACACAG 58.040 34.615 0.00 0.00 38.72 3.66
159 160 7.892778 TGCGAAATAACTCTTGTATTACACA 57.107 32.000 0.00 0.00 34.51 3.72
160 161 9.601971 TTTTGCGAAATAACTCTTGTATTACAC 57.398 29.630 0.00 0.00 0.00 2.90
187 188 6.772233 CCTTTTCAAATTCTCCATGGGTTTTT 59.228 34.615 13.02 4.60 0.00 1.94
188 189 6.298361 CCTTTTCAAATTCTCCATGGGTTTT 58.702 36.000 13.02 4.25 0.00 2.43
189 190 5.221904 CCCTTTTCAAATTCTCCATGGGTTT 60.222 40.000 13.02 5.77 0.00 3.27
190 191 4.286808 CCCTTTTCAAATTCTCCATGGGTT 59.713 41.667 13.02 0.00 0.00 4.11
191 192 3.840078 CCCTTTTCAAATTCTCCATGGGT 59.160 43.478 13.02 0.00 0.00 4.51
192 193 3.198417 CCCCTTTTCAAATTCTCCATGGG 59.802 47.826 13.02 2.57 0.00 4.00
193 194 3.369787 GCCCCTTTTCAAATTCTCCATGG 60.370 47.826 4.97 4.97 0.00 3.66
194 195 3.261390 TGCCCCTTTTCAAATTCTCCATG 59.739 43.478 0.00 0.00 0.00 3.66
195 196 3.519667 TGCCCCTTTTCAAATTCTCCAT 58.480 40.909 0.00 0.00 0.00 3.41
196 197 2.969628 TGCCCCTTTTCAAATTCTCCA 58.030 42.857 0.00 0.00 0.00 3.86
197 198 3.369787 CCATGCCCCTTTTCAAATTCTCC 60.370 47.826 0.00 0.00 0.00 3.71
198 199 3.515104 TCCATGCCCCTTTTCAAATTCTC 59.485 43.478 0.00 0.00 0.00 2.87
199 200 3.516700 CTCCATGCCCCTTTTCAAATTCT 59.483 43.478 0.00 0.00 0.00 2.40
200 201 3.369787 CCTCCATGCCCCTTTTCAAATTC 60.370 47.826 0.00 0.00 0.00 2.17
201 202 2.573009 CCTCCATGCCCCTTTTCAAATT 59.427 45.455 0.00 0.00 0.00 1.82
202 203 2.190538 CCTCCATGCCCCTTTTCAAAT 58.809 47.619 0.00 0.00 0.00 2.32
203 204 1.643310 CCTCCATGCCCCTTTTCAAA 58.357 50.000 0.00 0.00 0.00 2.69
204 205 0.904394 GCCTCCATGCCCCTTTTCAA 60.904 55.000 0.00 0.00 0.00 2.69
205 206 1.305213 GCCTCCATGCCCCTTTTCA 60.305 57.895 0.00 0.00 0.00 2.69
206 207 0.904394 TTGCCTCCATGCCCCTTTTC 60.904 55.000 0.00 0.00 0.00 2.29
207 208 1.158227 TTGCCTCCATGCCCCTTTT 59.842 52.632 0.00 0.00 0.00 2.27
208 209 1.610379 GTTGCCTCCATGCCCCTTT 60.610 57.895 0.00 0.00 0.00 3.11
209 210 2.037847 GTTGCCTCCATGCCCCTT 59.962 61.111 0.00 0.00 0.00 3.95
210 211 2.384933 TTTGTTGCCTCCATGCCCCT 62.385 55.000 0.00 0.00 0.00 4.79
211 212 1.266867 ATTTGTTGCCTCCATGCCCC 61.267 55.000 0.00 0.00 0.00 5.80
212 213 0.108041 CATTTGTTGCCTCCATGCCC 60.108 55.000 0.00 0.00 0.00 5.36
213 214 0.108041 CCATTTGTTGCCTCCATGCC 60.108 55.000 0.00 0.00 0.00 4.40
214 215 0.108041 CCCATTTGTTGCCTCCATGC 60.108 55.000 0.00 0.00 0.00 4.06
215 216 0.538118 CCCCATTTGTTGCCTCCATG 59.462 55.000 0.00 0.00 0.00 3.66
216 217 1.266867 GCCCCATTTGTTGCCTCCAT 61.267 55.000 0.00 0.00 0.00 3.41
217 218 1.912763 GCCCCATTTGTTGCCTCCA 60.913 57.895 0.00 0.00 0.00 3.86
218 219 1.891722 CTGCCCCATTTGTTGCCTCC 61.892 60.000 0.00 0.00 0.00 4.30
219 220 1.187567 ACTGCCCCATTTGTTGCCTC 61.188 55.000 0.00 0.00 0.00 4.70
220 221 0.114168 TACTGCCCCATTTGTTGCCT 59.886 50.000 0.00 0.00 0.00 4.75
221 222 1.194218 ATACTGCCCCATTTGTTGCC 58.806 50.000 0.00 0.00 0.00 4.52
222 223 3.333029 AAATACTGCCCCATTTGTTGC 57.667 42.857 0.00 0.00 0.00 4.17
223 224 4.002316 CCAAAATACTGCCCCATTTGTTG 58.998 43.478 0.00 0.00 30.89 3.33
224 225 3.650461 ACCAAAATACTGCCCCATTTGTT 59.350 39.130 0.00 0.00 30.89 2.83
225 226 3.247162 ACCAAAATACTGCCCCATTTGT 58.753 40.909 0.00 0.00 30.89 2.83
226 227 3.979101 ACCAAAATACTGCCCCATTTG 57.021 42.857 0.00 0.00 0.00 2.32
227 228 5.276440 TGATACCAAAATACTGCCCCATTT 58.724 37.500 0.00 0.00 0.00 2.32
228 229 4.877773 TGATACCAAAATACTGCCCCATT 58.122 39.130 0.00 0.00 0.00 3.16
229 230 4.534647 TGATACCAAAATACTGCCCCAT 57.465 40.909 0.00 0.00 0.00 4.00
230 231 4.167892 AGATGATACCAAAATACTGCCCCA 59.832 41.667 0.00 0.00 0.00 4.96
231 232 4.729868 AGATGATACCAAAATACTGCCCC 58.270 43.478 0.00 0.00 0.00 5.80
232 233 5.239525 GTGAGATGATACCAAAATACTGCCC 59.760 44.000 0.00 0.00 0.00 5.36
233 234 5.822519 TGTGAGATGATACCAAAATACTGCC 59.177 40.000 0.00 0.00 0.00 4.85
234 235 6.238484 GGTGTGAGATGATACCAAAATACTGC 60.238 42.308 0.00 0.00 33.42 4.40
235 236 7.050377 AGGTGTGAGATGATACCAAAATACTG 58.950 38.462 0.00 0.00 35.66 2.74
236 237 7.092891 TGAGGTGTGAGATGATACCAAAATACT 60.093 37.037 0.00 0.00 35.66 2.12
237 238 7.047891 TGAGGTGTGAGATGATACCAAAATAC 58.952 38.462 0.00 0.00 35.66 1.89
238 239 7.194112 TGAGGTGTGAGATGATACCAAAATA 57.806 36.000 0.00 0.00 35.66 1.40
239 240 6.065976 TGAGGTGTGAGATGATACCAAAAT 57.934 37.500 0.00 0.00 35.66 1.82
240 241 5.497464 TGAGGTGTGAGATGATACCAAAA 57.503 39.130 0.00 0.00 35.66 2.44
241 242 5.497464 TTGAGGTGTGAGATGATACCAAA 57.503 39.130 0.00 0.00 35.66 3.28
242 243 5.497464 TTTGAGGTGTGAGATGATACCAA 57.503 39.130 0.00 0.00 35.66 3.67
243 244 5.497464 TTTTGAGGTGTGAGATGATACCA 57.503 39.130 0.00 0.00 35.66 3.25
244 245 8.682936 ATAATTTTGAGGTGTGAGATGATACC 57.317 34.615 0.00 0.00 0.00 2.73
247 248 9.471702 AAGAATAATTTTGAGGTGTGAGATGAT 57.528 29.630 0.00 0.00 0.00 2.45
248 249 8.868522 AAGAATAATTTTGAGGTGTGAGATGA 57.131 30.769 0.00 0.00 0.00 2.92
249 250 9.350357 CAAAGAATAATTTTGAGGTGTGAGATG 57.650 33.333 0.00 0.00 37.65 2.90
250 251 9.082313 ACAAAGAATAATTTTGAGGTGTGAGAT 57.918 29.630 4.87 0.00 38.55 2.75
251 252 8.463930 ACAAAGAATAATTTTGAGGTGTGAGA 57.536 30.769 4.87 0.00 38.55 3.27
252 253 8.571336 AGACAAAGAATAATTTTGAGGTGTGAG 58.429 33.333 4.87 0.00 38.55 3.51
253 254 8.463930 AGACAAAGAATAATTTTGAGGTGTGA 57.536 30.769 4.87 0.00 38.55 3.58
254 255 9.533253 AAAGACAAAGAATAATTTTGAGGTGTG 57.467 29.630 4.87 0.00 38.55 3.82
306 307 9.496873 GCCATACAACAATACAACAGGTATATA 57.503 33.333 0.00 0.00 41.87 0.86
307 308 7.447238 GGCCATACAACAATACAACAGGTATAT 59.553 37.037 0.00 0.00 41.87 0.86
308 309 6.768861 GGCCATACAACAATACAACAGGTATA 59.231 38.462 0.00 0.00 41.87 1.47
309 310 5.592688 GGCCATACAACAATACAACAGGTAT 59.407 40.000 0.00 0.00 44.62 2.73
310 311 4.944930 GGCCATACAACAATACAACAGGTA 59.055 41.667 0.00 0.00 36.16 3.08
311 312 3.761752 GGCCATACAACAATACAACAGGT 59.238 43.478 0.00 0.00 0.00 4.00
312 313 3.181501 CGGCCATACAACAATACAACAGG 60.182 47.826 2.24 0.00 0.00 4.00
313 314 3.438781 ACGGCCATACAACAATACAACAG 59.561 43.478 2.24 0.00 0.00 3.16
314 315 3.413327 ACGGCCATACAACAATACAACA 58.587 40.909 2.24 0.00 0.00 3.33
315 316 4.428615 AACGGCCATACAACAATACAAC 57.571 40.909 2.24 0.00 0.00 3.32
316 317 4.762765 AGAAACGGCCATACAACAATACAA 59.237 37.500 2.24 0.00 0.00 2.41
317 318 4.328536 AGAAACGGCCATACAACAATACA 58.671 39.130 2.24 0.00 0.00 2.29
318 319 4.957759 AGAAACGGCCATACAACAATAC 57.042 40.909 2.24 0.00 0.00 1.89
319 320 8.734218 TTTATAGAAACGGCCATACAACAATA 57.266 30.769 2.24 0.00 0.00 1.90
320 321 7.633193 TTTATAGAAACGGCCATACAACAAT 57.367 32.000 2.24 0.00 0.00 2.71
321 322 7.633193 ATTTATAGAAACGGCCATACAACAA 57.367 32.000 2.24 0.00 0.00 2.83
322 323 7.476667 CAATTTATAGAAACGGCCATACAACA 58.523 34.615 2.24 0.00 0.00 3.33
323 324 6.416750 GCAATTTATAGAAACGGCCATACAAC 59.583 38.462 2.24 0.00 0.00 3.32
324 325 6.320164 AGCAATTTATAGAAACGGCCATACAA 59.680 34.615 2.24 0.00 30.79 2.41
325 326 5.825679 AGCAATTTATAGAAACGGCCATACA 59.174 36.000 2.24 0.00 30.79 2.29
326 327 6.313744 AGCAATTTATAGAAACGGCCATAC 57.686 37.500 2.24 0.00 30.79 2.39
327 328 6.952773 AAGCAATTTATAGAAACGGCCATA 57.047 33.333 2.24 0.00 30.79 2.74
328 329 5.852282 AAGCAATTTATAGAAACGGCCAT 57.148 34.783 2.24 0.00 30.79 4.40
329 330 5.652994 AAAGCAATTTATAGAAACGGCCA 57.347 34.783 2.24 0.00 30.79 5.36
330 331 7.649057 AGATAAAGCAATTTATAGAAACGGCC 58.351 34.615 0.00 0.00 30.79 6.13
331 332 7.530861 CGAGATAAAGCAATTTATAGAAACGGC 59.469 37.037 0.59 0.59 0.00 5.68
332 333 8.548721 ACGAGATAAAGCAATTTATAGAAACGG 58.451 33.333 0.00 0.00 0.00 4.44
333 334 9.358123 CACGAGATAAAGCAATTTATAGAAACG 57.642 33.333 0.00 0.00 0.00 3.60
336 337 8.752254 CGACACGAGATAAAGCAATTTATAGAA 58.248 33.333 0.00 0.00 0.00 2.10
337 338 7.096189 GCGACACGAGATAAAGCAATTTATAGA 60.096 37.037 0.00 0.00 0.00 1.98
338 339 7.004225 GCGACACGAGATAAAGCAATTTATAG 58.996 38.462 0.00 0.00 0.00 1.31
339 340 6.073980 GGCGACACGAGATAAAGCAATTTATA 60.074 38.462 0.00 0.00 0.00 0.98
340 341 5.277345 GGCGACACGAGATAAAGCAATTTAT 60.277 40.000 0.00 0.00 0.00 1.40
341 342 4.033587 GGCGACACGAGATAAAGCAATTTA 59.966 41.667 0.00 0.00 0.00 1.40
342 343 3.181510 GGCGACACGAGATAAAGCAATTT 60.182 43.478 0.00 0.00 0.00 1.82
343 344 2.351726 GGCGACACGAGATAAAGCAATT 59.648 45.455 0.00 0.00 0.00 2.32
344 345 1.933853 GGCGACACGAGATAAAGCAAT 59.066 47.619 0.00 0.00 0.00 3.56
345 346 1.355971 GGCGACACGAGATAAAGCAA 58.644 50.000 0.00 0.00 0.00 3.91
346 347 0.800683 CGGCGACACGAGATAAAGCA 60.801 55.000 0.00 0.00 35.47 3.91
347 348 0.801067 ACGGCGACACGAGATAAAGC 60.801 55.000 16.62 0.00 37.61 3.51
348 349 2.463553 TACGGCGACACGAGATAAAG 57.536 50.000 16.62 0.00 37.61 1.85
349 350 2.600556 CGATACGGCGACACGAGATAAA 60.601 50.000 16.62 0.00 37.61 1.40
350 351 1.070376 CGATACGGCGACACGAGATAA 60.070 52.381 16.62 0.00 37.61 1.75
351 352 0.509929 CGATACGGCGACACGAGATA 59.490 55.000 16.62 0.00 37.61 1.98
352 353 1.278937 CGATACGGCGACACGAGAT 59.721 57.895 16.62 0.00 37.61 2.75
353 354 2.705220 CGATACGGCGACACGAGA 59.295 61.111 16.62 0.00 37.61 4.04
354 355 2.352001 CCGATACGGCGACACGAG 60.352 66.667 16.62 6.23 41.17 4.18
364 365 0.379669 ACCTACGAAGCACCGATACG 59.620 55.000 4.78 0.00 0.00 3.06
365 366 2.992242 GTACCTACGAAGCACCGATAC 58.008 52.381 4.78 0.00 0.00 2.24
378 379 5.764487 ATACCAAAGTAGCTCGTACCTAC 57.236 43.478 0.00 0.86 36.32 3.18
379 380 5.450965 GCAATACCAAAGTAGCTCGTACCTA 60.451 44.000 0.00 0.00 31.06 3.08
380 381 4.679905 GCAATACCAAAGTAGCTCGTACCT 60.680 45.833 0.00 0.00 31.06 3.08
381 382 3.554731 GCAATACCAAAGTAGCTCGTACC 59.445 47.826 0.00 0.00 31.06 3.34
382 383 4.178540 TGCAATACCAAAGTAGCTCGTAC 58.821 43.478 0.00 0.00 0.00 3.67
383 384 4.459390 TGCAATACCAAAGTAGCTCGTA 57.541 40.909 0.00 0.00 0.00 3.43
384 385 3.328382 TGCAATACCAAAGTAGCTCGT 57.672 42.857 0.00 0.00 0.00 4.18
385 386 3.871006 TGATGCAATACCAAAGTAGCTCG 59.129 43.478 0.00 0.00 0.00 5.03
386 387 6.483307 TGTATGATGCAATACCAAAGTAGCTC 59.517 38.462 6.17 0.00 32.93 4.09
387 388 6.356556 TGTATGATGCAATACCAAAGTAGCT 58.643 36.000 6.17 0.00 32.93 3.32
388 389 6.618287 TGTATGATGCAATACCAAAGTAGC 57.382 37.500 6.17 0.00 32.93 3.58
389 390 8.613060 AGATGTATGATGCAATACCAAAGTAG 57.387 34.615 6.17 0.00 32.93 2.57
390 391 8.978874 AAGATGTATGATGCAATACCAAAGTA 57.021 30.769 6.17 0.00 32.93 2.24
391 392 7.886629 AAGATGTATGATGCAATACCAAAGT 57.113 32.000 6.17 0.00 32.93 2.66
395 396 9.013229 GGATAAAAGATGTATGATGCAATACCA 57.987 33.333 6.17 0.00 32.93 3.25
396 397 9.236006 AGGATAAAAGATGTATGATGCAATACC 57.764 33.333 6.17 0.00 32.93 2.73
406 407 9.197694 CGGACTCTAAAGGATAAAAGATGTATG 57.802 37.037 0.00 0.00 0.00 2.39
407 408 7.873505 GCGGACTCTAAAGGATAAAAGATGTAT 59.126 37.037 0.00 0.00 0.00 2.29
408 409 7.208080 GCGGACTCTAAAGGATAAAAGATGTA 58.792 38.462 0.00 0.00 0.00 2.29
409 410 6.049790 GCGGACTCTAAAGGATAAAAGATGT 58.950 40.000 0.00 0.00 0.00 3.06
410 411 5.467063 GGCGGACTCTAAAGGATAAAAGATG 59.533 44.000 0.00 0.00 0.00 2.90
411 412 5.454897 GGGCGGACTCTAAAGGATAAAAGAT 60.455 44.000 0.00 0.00 0.00 2.40
412 413 4.141779 GGGCGGACTCTAAAGGATAAAAGA 60.142 45.833 0.00 0.00 0.00 2.52
413 414 4.127907 GGGCGGACTCTAAAGGATAAAAG 58.872 47.826 0.00 0.00 0.00 2.27
414 415 3.118149 GGGGCGGACTCTAAAGGATAAAA 60.118 47.826 0.00 0.00 0.00 1.52
415 416 2.436911 GGGGCGGACTCTAAAGGATAAA 59.563 50.000 0.00 0.00 0.00 1.40
416 417 2.044758 GGGGCGGACTCTAAAGGATAA 58.955 52.381 0.00 0.00 0.00 1.75
417 418 1.062734 TGGGGCGGACTCTAAAGGATA 60.063 52.381 0.00 0.00 0.00 2.59
418 419 0.326238 TGGGGCGGACTCTAAAGGAT 60.326 55.000 0.00 0.00 0.00 3.24
419 420 1.079621 TGGGGCGGACTCTAAAGGA 59.920 57.895 0.00 0.00 0.00 3.36
420 421 1.221021 GTGGGGCGGACTCTAAAGG 59.779 63.158 0.00 0.00 0.00 3.11
421 422 1.221021 GGTGGGGCGGACTCTAAAG 59.779 63.158 0.00 0.00 0.00 1.85
422 423 1.229400 AGGTGGGGCGGACTCTAAA 60.229 57.895 0.00 0.00 0.00 1.85
423 424 1.684734 GAGGTGGGGCGGACTCTAA 60.685 63.158 0.00 0.00 0.00 2.10
424 425 2.043248 GAGGTGGGGCGGACTCTA 60.043 66.667 0.00 0.00 0.00 2.43
425 426 3.846405 TTGAGGTGGGGCGGACTCT 62.846 63.158 0.00 0.00 0.00 3.24
426 427 2.198304 AATTGAGGTGGGGCGGACTC 62.198 60.000 0.00 0.00 0.00 3.36
427 428 1.789576 AAATTGAGGTGGGGCGGACT 61.790 55.000 0.00 0.00 0.00 3.85
428 429 0.898326 AAAATTGAGGTGGGGCGGAC 60.898 55.000 0.00 0.00 0.00 4.79
429 430 0.178947 AAAAATTGAGGTGGGGCGGA 60.179 50.000 0.00 0.00 0.00 5.54
430 431 1.203758 GTAAAAATTGAGGTGGGGCGG 59.796 52.381 0.00 0.00 0.00 6.13
431 432 1.203758 GGTAAAAATTGAGGTGGGGCG 59.796 52.381 0.00 0.00 0.00 6.13
432 433 1.553248 GGGTAAAAATTGAGGTGGGGC 59.447 52.381 0.00 0.00 0.00 5.80
433 434 1.822371 CGGGTAAAAATTGAGGTGGGG 59.178 52.381 0.00 0.00 0.00 4.96
434 435 2.490509 GACGGGTAAAAATTGAGGTGGG 59.509 50.000 0.00 0.00 0.00 4.61
435 436 3.150767 TGACGGGTAAAAATTGAGGTGG 58.849 45.455 0.00 0.00 0.00 4.61
436 437 4.436852 CGATGACGGGTAAAAATTGAGGTG 60.437 45.833 0.00 0.00 35.72 4.00
437 438 3.687698 CGATGACGGGTAAAAATTGAGGT 59.312 43.478 0.00 0.00 35.72 3.85
438 439 4.273005 CGATGACGGGTAAAAATTGAGG 57.727 45.455 0.00 0.00 35.72 3.86
459 460 3.140814 GCTTTGGATCCGGTGGCC 61.141 66.667 7.39 0.00 0.00 5.36
460 461 2.361104 TGCTTTGGATCCGGTGGC 60.361 61.111 7.39 9.32 0.00 5.01
461 462 0.251916 TACTGCTTTGGATCCGGTGG 59.748 55.000 7.39 0.00 0.00 4.61
462 463 1.656652 CTACTGCTTTGGATCCGGTG 58.343 55.000 7.39 0.09 0.00 4.94
463 464 0.541863 CCTACTGCTTTGGATCCGGT 59.458 55.000 7.39 1.84 0.00 5.28
464 465 0.541863 ACCTACTGCTTTGGATCCGG 59.458 55.000 7.39 0.00 0.00 5.14
465 466 1.802880 CGACCTACTGCTTTGGATCCG 60.803 57.143 7.39 0.00 0.00 4.18
466 467 1.480954 TCGACCTACTGCTTTGGATCC 59.519 52.381 4.20 4.20 0.00 3.36
467 468 2.961526 TCGACCTACTGCTTTGGATC 57.038 50.000 0.00 0.00 0.00 3.36
468 469 3.600388 CTTTCGACCTACTGCTTTGGAT 58.400 45.455 0.00 0.00 0.00 3.41
469 470 2.870435 GCTTTCGACCTACTGCTTTGGA 60.870 50.000 0.00 0.00 0.00 3.53
470 471 1.464997 GCTTTCGACCTACTGCTTTGG 59.535 52.381 0.00 0.00 0.00 3.28
471 472 2.158449 CAGCTTTCGACCTACTGCTTTG 59.842 50.000 0.00 0.00 0.00 2.77
472 473 2.037251 TCAGCTTTCGACCTACTGCTTT 59.963 45.455 0.00 0.00 0.00 3.51
473 474 1.618837 TCAGCTTTCGACCTACTGCTT 59.381 47.619 0.00 0.00 0.00 3.91
474 475 1.203523 CTCAGCTTTCGACCTACTGCT 59.796 52.381 0.00 0.00 0.00 4.24
475 476 1.634702 CTCAGCTTTCGACCTACTGC 58.365 55.000 0.00 0.00 0.00 4.40
476 477 1.737363 GCCTCAGCTTTCGACCTACTG 60.737 57.143 0.00 0.00 35.50 2.74
477 478 0.533032 GCCTCAGCTTTCGACCTACT 59.467 55.000 0.00 0.00 35.50 2.57
478 479 3.052181 GCCTCAGCTTTCGACCTAC 57.948 57.895 0.00 0.00 35.50 3.18
489 490 2.941720 CCTCACAAGATTTAGCCTCAGC 59.058 50.000 0.00 0.00 40.32 4.26
490 491 2.941720 GCCTCACAAGATTTAGCCTCAG 59.058 50.000 0.00 0.00 0.00 3.35
502 503 3.866651 ACTATGCTAGTTGCCTCACAAG 58.133 45.455 0.00 0.00 39.50 3.16
513 514 7.906199 AGATGAGAAAAGGTACTATGCTAGT 57.094 36.000 0.00 2.19 38.49 2.57
516 517 5.819901 GCAAGATGAGAAAAGGTACTATGCT 59.180 40.000 0.00 0.00 38.49 3.79
670 685 0.106519 ACATCCACTAGCCATTGCCC 60.107 55.000 0.00 0.00 38.69 5.36
673 688 3.201290 GACTCACATCCACTAGCCATTG 58.799 50.000 0.00 0.00 0.00 2.82
674 689 2.840038 TGACTCACATCCACTAGCCATT 59.160 45.455 0.00 0.00 0.00 3.16
719 735 3.000041 TGGATTGTACGTGACATGCTTC 59.000 45.455 0.00 0.00 38.07 3.86
794 820 3.924686 GGTCATTTATATACGGCCGACTG 59.075 47.826 35.90 12.85 0.00 3.51
807 833 7.184106 CGTAACTTAATTGCACGGTCATTTAT 58.816 34.615 0.00 0.00 0.00 1.40
810 836 4.670735 GCGTAACTTAATTGCACGGTCATT 60.671 41.667 0.00 0.00 33.39 2.57
812 838 2.158058 GCGTAACTTAATTGCACGGTCA 59.842 45.455 0.00 0.00 33.39 4.02
830 856 0.032678 AATAGCTAGAGCATGCGCGT 59.967 50.000 16.01 0.00 45.49 6.01
884 918 2.842496 AGGCTGTTGATGAGATGAGGAA 59.158 45.455 0.00 0.00 0.00 3.36
921 955 3.063725 GCTGCTGCTATATATGCTTGAGC 59.936 47.826 8.53 0.00 37.65 4.26
957 991 0.320073 CCGGGTTAACAGTTGAGCGA 60.320 55.000 8.10 0.00 0.00 4.93
977 1027 3.485431 CAGCAGTTCGCAGCCTCG 61.485 66.667 0.00 0.00 46.13 4.63
978 1028 3.797546 GCAGCAGTTCGCAGCCTC 61.798 66.667 0.00 0.00 46.80 4.70
982 1032 1.904852 ATCGTTGCAGCAGTTCGCAG 61.905 55.000 0.24 0.00 46.13 5.18
983 1033 1.960763 ATCGTTGCAGCAGTTCGCA 60.961 52.632 0.24 0.00 46.13 5.10
1032 1085 3.663025 GAGAGAAAGAAAGAGCACAGCT 58.337 45.455 0.00 0.00 43.88 4.24
1033 1086 2.411409 CGAGAGAAAGAAAGAGCACAGC 59.589 50.000 0.00 0.00 0.00 4.40
1034 1087 2.992543 CCGAGAGAAAGAAAGAGCACAG 59.007 50.000 0.00 0.00 0.00 3.66
1035 1088 2.628178 TCCGAGAGAAAGAAAGAGCACA 59.372 45.455 0.00 0.00 0.00 4.57
1044 1097 1.546476 GAGCAGGTTCCGAGAGAAAGA 59.454 52.381 0.00 0.00 35.85 2.52
1394 1460 4.785512 ACTCGAGCAGCTTCGCGG 62.786 66.667 13.61 3.35 40.29 6.46
1395 1461 3.243892 GACTCGAGCAGCTTCGCG 61.244 66.667 13.61 2.67 40.29 5.87
1399 1465 4.443266 GCCGGACTCGAGCAGCTT 62.443 66.667 13.61 0.00 39.00 3.74
1485 1557 1.224592 GGCGATCAGGGTGTTGGAT 59.775 57.895 0.00 0.00 0.00 3.41
1956 2037 3.303135 ACGCACCCGCAGAAGAGA 61.303 61.111 0.00 0.00 38.40 3.10
2091 2175 4.953868 TTCACGCCGGACACCACG 62.954 66.667 5.05 0.00 0.00 4.94
2121 2205 4.986587 TCCACCGTCGCGTTGTCG 62.987 66.667 5.77 7.36 40.37 4.35
2211 2295 2.725312 GCCGCCTCCTCTGATGTCA 61.725 63.158 0.00 0.00 0.00 3.58
2378 2722 8.862325 AGACATCACAGATTTATTGTTGGTTA 57.138 30.769 0.00 0.00 0.00 2.85
2380 2724 7.170965 AGAGACATCACAGATTTATTGTTGGT 58.829 34.615 0.00 0.00 0.00 3.67
2381 2725 7.621428 AGAGACATCACAGATTTATTGTTGG 57.379 36.000 0.00 0.00 0.00 3.77
2382 2726 7.901889 CGAAGAGACATCACAGATTTATTGTTG 59.098 37.037 0.00 0.00 0.00 3.33
2385 2729 7.276438 TCACGAAGAGACATCACAGATTTATTG 59.724 37.037 0.00 0.00 0.00 1.90
2386 2730 7.323420 TCACGAAGAGACATCACAGATTTATT 58.677 34.615 0.00 0.00 0.00 1.40
2389 2777 5.139435 TCACGAAGAGACATCACAGATTT 57.861 39.130 0.00 0.00 0.00 2.17
2400 2788 6.090358 TGACCGAATAAATTTCACGAAGAGAC 59.910 38.462 0.00 0.00 0.00 3.36
2420 2808 8.420374 AGAATACAAACAGTTATACATGACCG 57.580 34.615 0.00 0.00 0.00 4.79
2459 2847 6.464180 CCCTCTTCTTATTAGCAGCTGAAGAT 60.464 42.308 20.43 9.53 39.04 2.40
2492 2880 3.507233 TGGCTGGTAGCAAAATCTTCAAG 59.493 43.478 2.99 0.00 44.75 3.02
2542 2930 6.088016 TGCATATCCAAACAAGGAATATGC 57.912 37.500 19.24 19.24 44.50 3.14
2543 2931 7.719483 ACTTGCATATCCAAACAAGGAATATG 58.281 34.615 6.55 0.00 42.97 1.78
2544 2932 7.902920 ACTTGCATATCCAAACAAGGAATAT 57.097 32.000 6.55 0.00 42.97 1.28
2593 2997 3.057736 TCGGAGAAGTGCTACAACAGTAC 60.058 47.826 0.00 0.00 39.97 2.73
2596 3000 2.724977 TCGGAGAAGTGCTACAACAG 57.275 50.000 0.00 0.00 0.00 3.16
2651 4485 1.068474 CTGTTTCGACGGTTGCCTAG 58.932 55.000 0.00 0.00 0.00 3.02
2670 4504 1.065709 TCGACTTTGCCTGGTTATCCC 60.066 52.381 0.00 0.00 0.00 3.85
2696 4530 3.369400 TTGGTTTGATGCGCCCCG 61.369 61.111 4.18 0.00 0.00 5.73
2698 4532 0.885196 TTAGTTGGTTTGATGCGCCC 59.115 50.000 4.18 0.00 0.00 6.13
2749 4583 3.311966 GGCAACAATGTCTTTGAAGCTC 58.688 45.455 5.52 1.22 38.76 4.09
2757 4591 1.106351 TGTGGCGGCAACAATGTCTT 61.106 50.000 15.50 0.00 0.00 3.01
2768 4602 0.454452 GAGAAATCGTTTGTGGCGGC 60.454 55.000 0.00 0.00 0.00 6.53
2889 4726 5.374921 ACATCTCATCATTCTTAAGCTGGG 58.625 41.667 0.00 0.00 0.00 4.45
2906 4743 4.125703 CAGTATTCCCTGCAGAACATCTC 58.874 47.826 17.39 0.00 0.00 2.75
3743 5648 7.042051 CCATGCCTGAATCAATTGAATCAAATC 60.042 37.037 23.03 15.88 33.97 2.17
3943 5852 4.157840 GGTTGTCTTGGTGTTGAAAGTTCT 59.842 41.667 0.00 0.00 0.00 3.01
3955 5864 2.943036 AATACACGGGTTGTCTTGGT 57.057 45.000 0.00 0.00 39.91 3.67
4178 6098 3.626028 AGATTGCTTCAACCGAACAAC 57.374 42.857 0.00 0.00 30.37 3.32
4197 6117 4.449743 TGCAGCAAACGTAACCTTAGTAAG 59.550 41.667 2.65 2.65 0.00 2.34
4254 6174 3.628032 TGTCAAAGATTAACCGTGTGCAA 59.372 39.130 0.00 0.00 0.00 4.08
4286 6206 3.055891 TGATGGAGACGAAGAAAGCATGA 60.056 43.478 0.00 0.00 0.00 3.07
4287 6207 3.264947 TGATGGAGACGAAGAAAGCATG 58.735 45.455 0.00 0.00 0.00 4.06
4298 6218 1.550524 TCCAGAACCTTGATGGAGACG 59.449 52.381 0.00 0.00 38.19 4.18
4315 6235 6.381498 TCCCTGTGAATTATTGTTACTCCA 57.619 37.500 0.00 0.00 0.00 3.86
4480 6400 3.636764 ACGTTGGAGGAAAAGAAGCAAAT 59.363 39.130 0.00 0.00 0.00 2.32
4485 6405 4.377897 AGTACACGTTGGAGGAAAAGAAG 58.622 43.478 0.00 0.00 0.00 2.85
4607 6527 5.073144 TGTGGGGAAATCTGTTTTCTAGAGT 59.927 40.000 10.16 0.00 42.83 3.24
4611 6531 5.414454 CGAATGTGGGGAAATCTGTTTTCTA 59.586 40.000 10.16 0.00 42.83 2.10
4627 6547 1.078759 GCTCTCACCGTCGAATGTGG 61.079 60.000 13.74 4.57 33.29 4.17
4631 6551 0.389948 GGTTGCTCTCACCGTCGAAT 60.390 55.000 0.00 0.00 0.00 3.34
4746 6666 1.139989 CGTACCATAAGGCAGCGATG 58.860 55.000 0.00 0.00 39.06 3.84
4794 6714 3.563223 CTGCCAAAAGATCTCCCATGAT 58.437 45.455 0.00 0.00 0.00 2.45
4810 6730 1.824230 ACACAAAAACTTGAGCTGCCA 59.176 42.857 0.00 0.00 0.00 4.92
4944 6864 1.007118 TGGGATGGAGAGAGTAGCACA 59.993 52.381 0.00 0.00 0.00 4.57
4975 6895 7.144722 ACATTAATATTGGGATATGTGCGTG 57.855 36.000 0.00 0.00 0.00 5.34
4976 6896 7.759489 AACATTAATATTGGGATATGTGCGT 57.241 32.000 0.00 0.00 0.00 5.24
5026 6946 9.482627 GTATAATTTTTGTCACATGAAACCCAA 57.517 29.630 0.00 0.00 0.00 4.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.