Multiple sequence alignment - TraesCS2D01G536200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G536200 chr2D 100.000 6215 0 0 643 6857 618821856 618828070 0.000000e+00 11478.0
1 TraesCS2D01G536200 chr2D 91.254 606 51 2 4139 4743 585030990 585031594 0.000000e+00 824.0
2 TraesCS2D01G536200 chr2D 100.000 344 0 0 1 344 618821214 618821557 2.700000e-178 636.0
3 TraesCS2D01G536200 chr2D 93.895 344 17 1 1 344 526521311 526520972 3.670000e-142 516.0
4 TraesCS2D01G536200 chr2D 86.765 136 15 3 643 777 145738318 145738185 1.540000e-31 148.0
5 TraesCS2D01G536200 chr2D 85.821 134 16 2 643 773 635091249 635091382 9.270000e-29 139.0
6 TraesCS2D01G536200 chr2D 74.206 252 36 19 6324 6574 634655272 634655049 2.050000e-10 78.7
7 TraesCS2D01G536200 chr2A 95.162 4795 134 34 773 5530 749836293 749841026 0.000000e+00 7480.0
8 TraesCS2D01G536200 chr2A 94.416 788 18 8 5526 6311 749842368 749843131 0.000000e+00 1188.0
9 TraesCS2D01G536200 chr2A 94.542 513 27 1 6345 6857 749843129 749843640 0.000000e+00 791.0
10 TraesCS2D01G536200 chr7D 85.411 1131 81 36 5189 6304 634593060 634591999 0.000000e+00 1098.0
11 TraesCS2D01G536200 chr7D 91.089 606 53 1 4138 4743 242800055 242800659 0.000000e+00 819.0
12 TraesCS2D01G536200 chr7D 90.391 614 58 1 4138 4751 42015926 42015314 0.000000e+00 806.0
13 TraesCS2D01G536200 chr7D 79.865 1038 161 36 4849 5859 480902345 480901329 0.000000e+00 715.0
14 TraesCS2D01G536200 chr7D 88.889 567 37 7 950 1504 634594929 634594377 0.000000e+00 675.0
15 TraesCS2D01G536200 chr7D 90.869 449 36 4 4753 5201 634593521 634593078 1.270000e-166 597.0
16 TraesCS2D01G536200 chr7D 91.279 344 25 3 2 344 164484501 164484840 1.350000e-126 464.0
17 TraesCS2D01G536200 chr7D 81.890 381 21 8 1945 2314 634594365 634594022 1.880000e-70 278.0
18 TraesCS2D01G536200 chr7D 77.378 389 57 20 1110 1478 480904317 480903940 1.170000e-47 202.0
19 TraesCS2D01G536200 chr2B 90.617 810 35 20 4753 5530 756105500 756106300 0.000000e+00 1037.0
20 TraesCS2D01G536200 chr2B 91.349 786 18 10 5526 6311 756106388 756107123 0.000000e+00 1029.0
21 TraesCS2D01G536200 chr2B 84.664 1115 73 34 3037 4141 756104483 756105509 0.000000e+00 1022.0
22 TraesCS2D01G536200 chr2B 93.985 665 28 3 950 1613 756100784 756101437 0.000000e+00 996.0
23 TraesCS2D01G536200 chr2B 90.203 296 26 2 1611 1904 756101861 756102155 3.880000e-102 383.0
24 TraesCS2D01G536200 chr2B 93.578 218 13 1 2360 2576 756102555 756102772 2.390000e-84 324.0
25 TraesCS2D01G536200 chr2B 94.554 202 10 1 2115 2316 756102365 756102565 1.860000e-80 311.0
26 TraesCS2D01G536200 chr2B 91.667 144 10 2 805 947 756098788 756098930 1.510000e-46 198.0
27 TraesCS2D01G536200 chr2B 88.961 154 17 0 2560 2713 756104074 756104227 2.520000e-44 191.0
28 TraesCS2D01G536200 chr2B 93.077 130 8 1 1896 2024 756102193 756102322 9.080000e-44 189.0
29 TraesCS2D01G536200 chr5B 91.162 611 53 1 4139 4748 662263458 662264068 0.000000e+00 828.0
30 TraesCS2D01G536200 chr5B 90.924 606 54 1 4139 4743 529722948 529722343 0.000000e+00 813.0
31 TraesCS2D01G536200 chr3D 91.089 606 54 0 4138 4743 41275026 41275631 0.000000e+00 821.0
32 TraesCS2D01G536200 chr3D 90.453 618 53 2 4139 4751 41368753 41369369 0.000000e+00 809.0
33 TraesCS2D01G536200 chr4D 90.391 614 56 2 4132 4743 491554199 491554811 0.000000e+00 804.0
34 TraesCS2D01G536200 chr6D 93.895 344 17 1 1 344 68685868 68685529 3.670000e-142 516.0
35 TraesCS2D01G536200 chr6D 91.570 344 24 2 1 344 58746038 58746376 2.900000e-128 470.0
36 TraesCS2D01G536200 chr6D 91.570 344 20 3 1 344 42567514 42567180 3.750000e-127 466.0
37 TraesCS2D01G536200 chr6D 85.417 144 15 4 643 780 58746424 58746567 1.990000e-30 145.0
38 TraesCS2D01G536200 chr5D 92.442 344 22 1 1 344 394843958 394843619 7.990000e-134 488.0
39 TraesCS2D01G536200 chr5D 91.789 341 24 2 3 343 102028643 102028307 8.050000e-129 472.0
40 TraesCS2D01G536200 chr5D 87.500 136 14 3 643 776 164646756 164646622 3.310000e-33 154.0
41 TraesCS2D01G536200 chr5D 85.507 138 17 3 643 777 550193603 550193466 2.580000e-29 141.0
42 TraesCS2D01G536200 chr5A 92.174 345 22 2 1 344 494279564 494279224 3.720000e-132 483.0
43 TraesCS2D01G536200 chr5A 86.567 134 13 4 643 773 487773352 487773483 7.170000e-30 143.0
44 TraesCS2D01G536200 chr1D 91.570 344 23 2 1 344 359605060 359604723 2.900000e-128 470.0
45 TraesCS2D01G536200 chr1D 85.714 133 15 4 644 773 443712845 443712714 3.340000e-28 137.0
46 TraesCS2D01G536200 chr1B 78.155 412 63 14 6394 6802 29504998 29505385 3.200000e-58 237.0
47 TraesCS2D01G536200 chr1A 76.471 493 74 25 6324 6802 255276697 255276233 5.350000e-56 230.0
48 TraesCS2D01G536200 chr7A 78.249 377 53 18 1121 1478 548052668 548052302 1.500000e-51 215.0
49 TraesCS2D01G536200 chr7B 76.559 401 65 17 1097 1478 506563752 506563362 7.020000e-45 193.0
50 TraesCS2D01G536200 chr7B 75.389 321 47 11 6474 6790 577567138 577567430 7.220000e-25 126.0
51 TraesCS2D01G536200 chr6A 86.466 133 15 2 644 773 266098641 266098773 7.170000e-30 143.0
52 TraesCS2D01G536200 chr3A 84.286 140 18 3 644 779 362593214 362593075 4.310000e-27 134.0
53 TraesCS2D01G536200 chr3A 94.872 39 0 2 2324 2362 686746175 686746139 7.430000e-05 60.2
54 TraesCS2D01G536200 chr3B 95.455 44 1 1 2643 2685 29598702 29598659 1.230000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G536200 chr2D 618821214 618828070 6856 False 6057.0 11478 100.000000 1 6857 2 chr2D.!!$F3 6856
1 TraesCS2D01G536200 chr2D 585030990 585031594 604 False 824.0 824 91.254000 4139 4743 1 chr2D.!!$F1 604
2 TraesCS2D01G536200 chr2A 749836293 749843640 7347 False 3153.0 7480 94.706667 773 6857 3 chr2A.!!$F1 6084
3 TraesCS2D01G536200 chr7D 242800055 242800659 604 False 819.0 819 91.089000 4138 4743 1 chr7D.!!$F2 605
4 TraesCS2D01G536200 chr7D 42015314 42015926 612 True 806.0 806 90.391000 4138 4751 1 chr7D.!!$R1 613
5 TraesCS2D01G536200 chr7D 634591999 634594929 2930 True 662.0 1098 86.764750 950 6304 4 chr7D.!!$R3 5354
6 TraesCS2D01G536200 chr7D 480901329 480904317 2988 True 458.5 715 78.621500 1110 5859 2 chr7D.!!$R2 4749
7 TraesCS2D01G536200 chr2B 756098788 756107123 8335 False 568.0 1037 91.265500 805 6311 10 chr2B.!!$F1 5506
8 TraesCS2D01G536200 chr5B 662263458 662264068 610 False 828.0 828 91.162000 4139 4748 1 chr5B.!!$F1 609
9 TraesCS2D01G536200 chr5B 529722343 529722948 605 True 813.0 813 90.924000 4139 4743 1 chr5B.!!$R1 604
10 TraesCS2D01G536200 chr3D 41275026 41275631 605 False 821.0 821 91.089000 4138 4743 1 chr3D.!!$F1 605
11 TraesCS2D01G536200 chr3D 41368753 41369369 616 False 809.0 809 90.453000 4139 4751 1 chr3D.!!$F2 612
12 TraesCS2D01G536200 chr4D 491554199 491554811 612 False 804.0 804 90.391000 4132 4743 1 chr4D.!!$F1 611
13 TraesCS2D01G536200 chr6D 58746038 58746567 529 False 307.5 470 88.493500 1 780 2 chr6D.!!$F1 779

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
694 695 0.323629 AGATTTCGGCGTCTTGGGAA 59.676 50.0 6.85 0.00 0.00 3.97 F
995 2857 0.460311 AGCGCTATAAGTGAAGCCGT 59.540 50.0 8.99 0.00 35.22 5.68 F
1269 3158 1.322538 GGGCCGGTAAGACCTTCGTA 61.323 60.0 1.90 0.00 35.66 3.43 F
2879 6693 1.096416 ACACCGCAAAGTTTCCGAAA 58.904 45.0 0.00 0.00 0.00 3.46 F
3865 7694 0.249447 CGAAGTGTGGTGCTGAGTCA 60.249 55.0 0.00 0.00 0.00 3.41 F
4688 8522 2.448926 TGGATTCGAGCTCGTTTTCA 57.551 45.0 33.33 23.32 40.80 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2332 4818 1.208776 CGGGGTAATCCTCCTTTTCGT 59.791 52.381 0.00 0.00 35.33 3.85 R
2817 6628 0.596083 GATGTCACGATGGCTCTCCG 60.596 60.000 0.00 0.00 34.14 4.63 R
2996 6810 0.373716 GCAAATAGTCCAGAACCGCG 59.626 55.000 0.00 0.00 0.00 6.46 R
4637 8471 0.372679 CTCGTACAACTCGCGAGCTA 59.627 55.000 34.83 18.81 44.03 3.32 R
4723 8557 1.139734 CTCGGCTCGCTAAAGCTCA 59.860 57.895 0.00 0.00 42.13 4.26 R
6345 11624 0.037975 GCAAGCCACAATTCACCAGG 60.038 55.000 0.00 0.00 0.00 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 2.658538 CGAGTCCATCGTTGAGCAG 58.341 57.895 0.00 0.00 46.62 4.24
62 63 1.634702 GAGTCCATCGTTGAGCAGAC 58.365 55.000 0.00 0.00 0.00 3.51
156 157 2.745100 GGAAAACTCGCCCGGACC 60.745 66.667 0.73 0.00 0.00 4.46
171 172 3.302347 GACCGTGGTGGAGAGGCTG 62.302 68.421 0.00 0.00 42.00 4.85
196 197 2.548480 CGGCGAAACCTTCTCTCTTTTT 59.452 45.455 0.00 0.00 35.61 1.94
197 198 3.364068 CGGCGAAACCTTCTCTCTTTTTC 60.364 47.826 0.00 0.00 35.61 2.29
200 201 3.808174 CGAAACCTTCTCTCTTTTTCGGT 59.192 43.478 6.83 0.00 42.93 4.69
214 215 0.991355 TTCGGTGGGGAATGGCCTAT 60.991 55.000 3.32 0.00 36.66 2.57
219 220 1.003696 GTGGGGAATGGCCTATCTAGC 59.996 57.143 3.32 0.00 36.66 3.42
225 226 1.121407 ATGGCCTATCTAGCGGTGCA 61.121 55.000 3.32 0.00 0.00 4.57
312 313 2.552315 GGACGATTGGCTTGACTTTTCA 59.448 45.455 0.00 0.00 0.00 2.69
328 329 1.344953 TTCACCTGACAGTGTGGCCT 61.345 55.000 18.29 0.00 38.91 5.19
340 341 0.887387 TGTGGCCTAGGCGTGTTTTC 60.887 55.000 27.24 12.09 43.06 2.29
691 692 1.287425 GGTAGATTTCGGCGTCTTGG 58.713 55.000 6.85 0.00 0.00 3.61
693 694 1.134907 GTAGATTTCGGCGTCTTGGGA 60.135 52.381 6.85 0.00 0.00 4.37
694 695 0.323629 AGATTTCGGCGTCTTGGGAA 59.676 50.000 6.85 0.00 0.00 3.97
696 697 1.296056 ATTTCGGCGTCTTGGGAACG 61.296 55.000 6.85 0.00 0.00 3.95
701 702 3.479269 CGTCTTGGGAACGCGAGC 61.479 66.667 15.93 3.26 0.00 5.03
702 703 2.357034 GTCTTGGGAACGCGAGCA 60.357 61.111 15.93 0.00 0.00 4.26
705 709 4.697756 TTGGGAACGCGAGCAGGG 62.698 66.667 15.93 0.00 38.93 4.45
744 750 1.134580 GTAAAAGGCGTCTAGGGGGAC 60.135 57.143 0.00 0.00 0.00 4.46
784 791 3.065095 GGAGATGCTCTGAGACAAATTGC 59.935 47.826 9.28 0.00 0.00 3.56
840 847 1.601166 ACTGTTTTGTTCCCGTAGCC 58.399 50.000 0.00 0.00 0.00 3.93
948 2793 0.970427 TCGTGCTCCTCCATGTGCTA 60.970 55.000 0.00 0.00 0.00 3.49
995 2857 0.460311 AGCGCTATAAGTGAAGCCGT 59.540 50.000 8.99 0.00 35.22 5.68
1119 2990 2.231693 CGCGTATCTATCTCCGTTTCG 58.768 52.381 0.00 0.00 0.00 3.46
1145 3016 3.869272 GATGAACAGCAGCGGCCG 61.869 66.667 24.05 24.05 42.56 6.13
1269 3158 1.322538 GGGCCGGTAAGACCTTCGTA 61.323 60.000 1.90 0.00 35.66 3.43
1446 3335 4.415332 AACATCGTCGACCGCGCT 62.415 61.111 10.58 0.00 37.46 5.92
1505 3406 5.927954 TCCGTCTGGTTTTGTGTAATTAC 57.072 39.130 8.75 8.75 36.30 1.89
1507 3408 6.757237 TCCGTCTGGTTTTGTGTAATTACTA 58.243 36.000 16.33 3.43 36.30 1.82
1509 3410 7.879160 TCCGTCTGGTTTTGTGTAATTACTAAT 59.121 33.333 16.33 0.00 36.30 1.73
1510 3411 8.508875 CCGTCTGGTTTTGTGTAATTACTAATT 58.491 33.333 16.33 0.00 34.90 1.40
1527 3428 9.988815 ATTACTAATTAGCTCTACCAGTCAATG 57.011 33.333 12.54 0.00 0.00 2.82
1608 3525 7.806409 TGGTCACAATAATCCATTCATACTG 57.194 36.000 0.00 0.00 0.00 2.74
1635 3978 9.612620 CTTTCTGCTAAACTAAAATCGAATGTT 57.387 29.630 0.00 0.00 0.00 2.71
1636 3979 9.959749 TTTCTGCTAAACTAAAATCGAATGTTT 57.040 25.926 0.00 0.00 35.43 2.83
2064 4536 7.907045 CACTTTCCAGTTTGAATAATCTCATCG 59.093 37.037 0.00 0.00 0.00 3.84
2100 4580 8.481314 AGTGACAGTGTTCATATATCAAGTCAT 58.519 33.333 0.00 0.00 34.00 3.06
2101 4581 9.102757 GTGACAGTGTTCATATATCAAGTCATT 57.897 33.333 0.00 0.00 34.00 2.57
2426 4915 5.873179 ATGCCTTTTTGCAAATTGATCTG 57.127 34.783 13.65 0.00 45.84 2.90
2553 5042 2.159085 CCTCCGTCTCCCTATTTGTGTC 60.159 54.545 0.00 0.00 0.00 3.67
2627 6434 3.052455 TGCCGAGCATCAAAAAGACTA 57.948 42.857 0.00 0.00 31.71 2.59
2727 6538 3.363970 CGACAAAGAACATTTCCCGAGTG 60.364 47.826 0.00 0.00 0.00 3.51
2780 6591 4.431809 CCTAGTGTCTTTCTGCATCTCTG 58.568 47.826 0.00 0.00 0.00 3.35
2805 6616 2.640581 AAAAGCACCCTTGACGGCCT 62.641 55.000 0.00 0.00 0.00 5.19
2817 6628 2.879462 CGGCCTGTCGACGCTAAC 60.879 66.667 11.62 0.00 0.00 2.34
2864 6678 3.592059 TGAGTGTTTAAGCCGATACACC 58.408 45.455 0.00 0.00 41.28 4.16
2875 6689 1.129811 CCGATACACCGCAAAGTTTCC 59.870 52.381 0.00 0.00 0.00 3.13
2879 6693 1.096416 ACACCGCAAAGTTTCCGAAA 58.904 45.000 0.00 0.00 0.00 3.46
2897 6711 4.557301 CCGAAAATTGCCGAGTGTATTTTC 59.443 41.667 0.00 0.00 40.76 2.29
2918 6732 7.425915 TTTCGAAATACACAACAAAGTTTCG 57.574 32.000 6.47 10.68 45.27 3.46
2991 6805 9.871299 AAACTTTACATTGTGTGTTTTCAAAAC 57.129 25.926 6.02 6.02 42.29 2.43
3029 6843 4.981794 ACTATTTGCCGAGTGTATTTTGC 58.018 39.130 0.00 0.00 0.00 3.68
3034 6848 2.486203 TGCCGAGTGTATTTTGCGAAAT 59.514 40.909 16.10 16.10 38.88 2.17
3067 6883 6.392354 AGTATTTCGGAATACACTCGACAAA 58.608 36.000 25.02 0.00 46.54 2.83
3068 6884 6.869913 AGTATTTCGGAATACACTCGACAAAA 59.130 34.615 25.02 0.00 46.54 2.44
3077 6893 1.262950 CACTCGACAAAACGATTGCCA 59.737 47.619 0.00 0.00 41.39 4.92
3090 6906 1.135721 GATTGCCAGCCTGACCATTTC 59.864 52.381 0.00 0.00 0.00 2.17
3124 6940 3.576118 GCCCAGATGCTACTAGATTCTGA 59.424 47.826 13.46 0.00 36.72 3.27
3296 7119 8.923683 CACACATATCTAGCACAAATCTATCAG 58.076 37.037 0.00 0.00 0.00 2.90
3327 7151 2.163815 ACAAGTAGTCCATCGAGTTCCG 59.836 50.000 0.00 0.00 40.25 4.30
3424 7248 6.259167 TCCATCAAACACAAGTACTACACAAC 59.741 38.462 0.00 0.00 0.00 3.32
3430 7254 3.419922 CACAAGTACTACACAACGACGAC 59.580 47.826 0.00 0.00 0.00 4.34
3642 7469 3.600388 AGGAGAACGGTCACATGATTTC 58.400 45.455 1.87 0.00 0.00 2.17
3840 7669 1.294780 GAGTCACAGTGCCCTCCTG 59.705 63.158 0.00 0.00 36.01 3.86
3843 7672 0.392193 GTCACAGTGCCCTCCTGATG 60.392 60.000 0.00 0.00 34.04 3.07
3863 7692 0.464036 TTCGAAGTGTGGTGCTGAGT 59.536 50.000 0.00 0.00 0.00 3.41
3865 7694 0.249447 CGAAGTGTGGTGCTGAGTCA 60.249 55.000 0.00 0.00 0.00 3.41
3928 7757 4.156008 CAGATTTTTAGAAGAACCGGGGTG 59.844 45.833 6.32 0.00 0.00 4.61
4018 7847 4.491676 TGGTAAGCACGAGACAATAAGAC 58.508 43.478 0.00 0.00 0.00 3.01
4044 7873 5.971895 TGATTGAAAAGCTGCAAGAAAAC 57.028 34.783 1.02 0.00 34.07 2.43
4055 7884 4.540824 CTGCAAGAAAACTTACCAAGCTC 58.459 43.478 0.00 0.00 34.07 4.09
4174 8005 3.827782 TCGAATCTCGCGAGCTAAG 57.172 52.632 30.97 20.53 40.21 2.18
4212 8043 3.681417 TCGACTCGAATCAACTCGAACTA 59.319 43.478 0.00 0.00 46.53 2.24
4418 8249 7.646526 TCATGTATATGTTACTAACGTGCTGAC 59.353 37.037 4.18 0.00 35.73 3.51
4626 8460 9.982291 GTTCATATCATTAACGAGCTTAACAAA 57.018 29.630 0.00 0.00 0.00 2.83
4637 8471 4.150098 CGAGCTTAACAAACTAAACGAGCT 59.850 41.667 0.00 0.00 41.50 4.09
4667 8501 2.751259 AGTTGTACGAGTCGAGCCAATA 59.249 45.455 21.50 0.00 0.00 1.90
4687 8521 5.659048 ATATTGGATTCGAGCTCGTTTTC 57.341 39.130 33.33 25.52 40.80 2.29
4688 8522 2.448926 TGGATTCGAGCTCGTTTTCA 57.551 45.000 33.33 23.32 40.80 2.69
5268 9175 6.920210 GGTTCTTCTCAATCTTCTTGTTTTGG 59.080 38.462 0.00 0.00 0.00 3.28
5355 9273 6.183360 GGTCACTTTATACACGGATCTGTTTG 60.183 42.308 3.84 0.00 0.00 2.93
5371 9289 8.353684 GGATCTGTTTGATATCTCGTTCTTCTA 58.646 37.037 3.98 0.00 35.14 2.10
5442 9360 8.217111 TGTGGAGCATGAATCCTTATATTTACA 58.783 33.333 15.95 8.25 37.74 2.41
5469 9387 2.146920 TGCAAATCAGGGCATCATGA 57.853 45.000 0.00 0.00 38.11 3.07
5506 9424 0.664767 GTGTGGTGTGAGCGAGAGTC 60.665 60.000 0.00 0.00 0.00 3.36
5553 10820 6.040209 TCGTTTAACCTAGTAATCTTGCCA 57.960 37.500 0.00 0.00 0.00 4.92
5685 10952 3.251004 CCAAGTTGCTTCTGTAAGTCCAC 59.749 47.826 0.00 0.00 34.99 4.02
6031 11305 2.881111 AGAAAGACTTGGGGGCTTAC 57.119 50.000 0.00 0.00 43.62 2.34
6032 11306 1.003233 AGAAAGACTTGGGGGCTTACG 59.997 52.381 0.00 0.00 43.62 3.18
6211 11489 9.060347 TGAATTTTGAGCATATTGTATCTCCTC 57.940 33.333 0.00 0.00 0.00 3.71
6311 11590 3.897141 ACTTCAAAGCTAGCTAGTCCC 57.103 47.619 19.70 5.72 0.00 4.46
6312 11591 3.445987 ACTTCAAAGCTAGCTAGTCCCT 58.554 45.455 19.70 8.00 0.00 4.20
6313 11592 3.841255 ACTTCAAAGCTAGCTAGTCCCTT 59.159 43.478 19.70 13.39 0.00 3.95
6314 11593 5.024118 ACTTCAAAGCTAGCTAGTCCCTTA 58.976 41.667 19.70 3.99 0.00 2.69
6315 11594 5.484290 ACTTCAAAGCTAGCTAGTCCCTTAA 59.516 40.000 19.70 8.17 0.00 1.85
6316 11595 6.013639 ACTTCAAAGCTAGCTAGTCCCTTAAA 60.014 38.462 19.70 12.46 0.00 1.52
6317 11596 6.368779 TCAAAGCTAGCTAGTCCCTTAAAA 57.631 37.500 19.70 4.17 0.00 1.52
6318 11597 6.171213 TCAAAGCTAGCTAGTCCCTTAAAAC 58.829 40.000 19.70 1.39 0.00 2.43
6319 11598 6.013639 TCAAAGCTAGCTAGTCCCTTAAAACT 60.014 38.462 19.70 3.72 0.00 2.66
6320 11599 5.601583 AGCTAGCTAGTCCCTTAAAACTC 57.398 43.478 17.69 0.68 0.00 3.01
6321 11600 5.274015 AGCTAGCTAGTCCCTTAAAACTCT 58.726 41.667 17.69 3.02 0.00 3.24
6322 11601 6.433441 AGCTAGCTAGTCCCTTAAAACTCTA 58.567 40.000 17.69 0.00 0.00 2.43
6323 11602 6.896307 AGCTAGCTAGTCCCTTAAAACTCTAA 59.104 38.462 17.69 0.00 0.00 2.10
6324 11603 7.399478 AGCTAGCTAGTCCCTTAAAACTCTAAA 59.601 37.037 17.69 0.00 0.00 1.85
6325 11604 7.707464 GCTAGCTAGTCCCTTAAAACTCTAAAG 59.293 40.741 21.62 0.00 0.00 1.85
6326 11605 6.408035 AGCTAGTCCCTTAAAACTCTAAAGC 58.592 40.000 0.00 0.00 0.00 3.51
6327 11606 6.213802 AGCTAGTCCCTTAAAACTCTAAAGCT 59.786 38.462 0.00 0.00 31.87 3.74
6328 11607 6.535865 GCTAGTCCCTTAAAACTCTAAAGCTC 59.464 42.308 0.00 0.00 0.00 4.09
6329 11608 5.806818 AGTCCCTTAAAACTCTAAAGCTCC 58.193 41.667 0.00 0.00 0.00 4.70
6330 11609 4.942483 GTCCCTTAAAACTCTAAAGCTCCC 59.058 45.833 0.00 0.00 0.00 4.30
6331 11610 4.600111 TCCCTTAAAACTCTAAAGCTCCCA 59.400 41.667 0.00 0.00 0.00 4.37
6332 11611 5.073965 TCCCTTAAAACTCTAAAGCTCCCAA 59.926 40.000 0.00 0.00 0.00 4.12
6333 11612 5.416013 CCCTTAAAACTCTAAAGCTCCCAAG 59.584 44.000 0.00 0.00 0.00 3.61
6334 11613 6.238648 CCTTAAAACTCTAAAGCTCCCAAGA 58.761 40.000 0.00 0.00 0.00 3.02
6335 11614 6.715264 CCTTAAAACTCTAAAGCTCCCAAGAA 59.285 38.462 0.00 0.00 0.00 2.52
6336 11615 7.230712 CCTTAAAACTCTAAAGCTCCCAAGAAA 59.769 37.037 0.00 0.00 0.00 2.52
6337 11616 8.706322 TTAAAACTCTAAAGCTCCCAAGAAAT 57.294 30.769 0.00 0.00 0.00 2.17
6338 11617 6.825944 AAACTCTAAAGCTCCCAAGAAATC 57.174 37.500 0.00 0.00 0.00 2.17
6339 11618 4.849518 ACTCTAAAGCTCCCAAGAAATCC 58.150 43.478 0.00 0.00 0.00 3.01
6340 11619 4.289672 ACTCTAAAGCTCCCAAGAAATCCA 59.710 41.667 0.00 0.00 0.00 3.41
6341 11620 4.589908 TCTAAAGCTCCCAAGAAATCCAC 58.410 43.478 0.00 0.00 0.00 4.02
6342 11621 2.222227 AAGCTCCCAAGAAATCCACC 57.778 50.000 0.00 0.00 0.00 4.61
6343 11622 0.332972 AGCTCCCAAGAAATCCACCC 59.667 55.000 0.00 0.00 0.00 4.61
6344 11623 0.332972 GCTCCCAAGAAATCCACCCT 59.667 55.000 0.00 0.00 0.00 4.34
6345 11624 1.683319 GCTCCCAAGAAATCCACCCTC 60.683 57.143 0.00 0.00 0.00 4.30
6346 11625 0.999712 TCCCAAGAAATCCACCCTCC 59.000 55.000 0.00 0.00 0.00 4.30
6381 11660 2.278857 CGAGGGATCGTTCGGCAG 60.279 66.667 9.01 0.00 33.39 4.85
6387 11666 1.134694 GATCGTTCGGCAGGCAAAC 59.865 57.895 0.00 0.00 0.00 2.93
6403 11682 0.599204 AAACGTGTAGCTGTCCCGTG 60.599 55.000 0.00 0.00 0.00 4.94
6433 11712 1.134491 GTCAGGTATAGCCGGTTTGCT 60.134 52.381 1.90 0.00 45.38 3.91
6452 11731 4.356979 TTTTTCCACCGTTGCCCA 57.643 50.000 0.00 0.00 0.00 5.36
6460 11739 1.150536 ACCGTTGCCCAACACATCT 59.849 52.632 11.27 0.00 41.20 2.90
6507 11786 2.232208 CTCCAACATTTTCTTCCTGCCC 59.768 50.000 0.00 0.00 0.00 5.36
6563 11842 4.227134 CGGCCATCTCCTCCACCG 62.227 72.222 2.24 0.00 0.00 4.94
6598 11877 1.536418 CCGCCCCCATCTAGATCCA 60.536 63.158 1.03 0.00 0.00 3.41
6603 11882 2.291217 GCCCCCATCTAGATCCAATTCC 60.291 54.545 1.03 0.00 0.00 3.01
6627 11906 3.489229 GCAACATTCGGGGCTATCTTTTC 60.489 47.826 0.00 0.00 0.00 2.29
6634 11913 0.177373 GGGCTATCTTTTCCCGACGT 59.823 55.000 0.00 0.00 0.00 4.34
6654 11933 4.812476 CAATCGAGCCGACGCCCA 62.812 66.667 0.00 0.00 39.18 5.36
6701 11980 2.317149 CTGCCTCCGATTCTCCCCAC 62.317 65.000 0.00 0.00 0.00 4.61
6732 12011 4.235762 TCCCGCCGCCATTAGCTC 62.236 66.667 0.00 0.00 40.39 4.09
6749 12028 0.803768 CTCCATGCGTGTTCTCCTCG 60.804 60.000 4.96 0.00 0.00 4.63
6763 12042 1.591059 CCTCGCATCGCCTTCTCTG 60.591 63.158 0.00 0.00 0.00 3.35
6836 12115 4.148825 GTGGTCGGCGGCTGAGAT 62.149 66.667 12.68 0.00 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 0.320334 TCGGCGATTTGTCTGCTCAA 60.320 50.000 4.99 0.00 0.00 3.02
54 55 0.320334 TTCGGCGATTTGTCTGCTCA 60.320 50.000 11.76 0.00 0.00 4.26
60 61 0.165944 CAGGTGTTCGGCGATTTGTC 59.834 55.000 11.76 0.00 0.00 3.18
62 63 1.501741 CCAGGTGTTCGGCGATTTG 59.498 57.895 11.76 5.09 0.00 2.32
140 141 3.116531 CGGTCCGGGCGAGTTTTC 61.117 66.667 2.34 0.00 0.00 2.29
152 153 4.083862 GCCTCTCCACCACGGTCC 62.084 72.222 0.00 0.00 35.57 4.46
156 157 4.767255 GGCAGCCTCTCCACCACG 62.767 72.222 3.29 0.00 0.00 4.94
196 197 1.385347 ATAGGCCATTCCCCACCGA 60.385 57.895 5.01 0.00 34.51 4.69
197 198 1.073199 GATAGGCCATTCCCCACCG 59.927 63.158 5.01 0.00 34.51 4.94
200 201 1.362224 GCTAGATAGGCCATTCCCCA 58.638 55.000 5.01 0.00 34.51 4.96
279 280 0.105039 AATCGTCCAGATTCGCCTCC 59.895 55.000 0.00 0.00 45.95 4.30
312 313 1.194781 CCTAGGCCACACTGTCAGGT 61.195 60.000 5.01 0.00 0.00 4.00
673 674 1.134907 TCCCAAGACGCCGAAATCTAC 60.135 52.381 0.00 0.00 0.00 2.59
674 675 1.187974 TCCCAAGACGCCGAAATCTA 58.812 50.000 0.00 0.00 0.00 1.98
675 676 0.323629 TTCCCAAGACGCCGAAATCT 59.676 50.000 0.00 0.00 0.00 2.40
691 692 1.792118 AAAAACCCTGCTCGCGTTCC 61.792 55.000 5.77 0.00 0.00 3.62
693 694 3.836151 AAAAACCCTGCTCGCGTT 58.164 50.000 5.77 0.00 0.00 4.84
734 740 2.687902 CCGACAGGTCCCCCTAGA 59.312 66.667 0.00 0.00 39.89 2.43
840 847 3.248043 TCTGCGGTTCAGATTTGGG 57.752 52.632 0.00 0.00 46.34 4.12
904 911 4.518211 ACAGATTCTTTGACTTGCAAGAGG 59.482 41.667 32.50 11.24 37.87 3.69
948 2793 3.394836 GCCAGGGAAGGCGAGTCT 61.395 66.667 0.00 0.00 46.12 3.24
1119 2990 2.825836 CTGTTCATCCCAGCGGCC 60.826 66.667 0.00 0.00 0.00 6.13
1145 3016 4.692475 CCCCCAACGACACGGACC 62.692 72.222 0.00 0.00 0.00 4.46
1176 3047 3.574284 TGAATTTGCACAGAAATCCCG 57.426 42.857 0.00 0.00 0.00 5.14
1236 3107 3.009714 GCCCCTTCGTCCCCTCTT 61.010 66.667 0.00 0.00 0.00 2.85
1269 3158 2.132996 CGCAGCCCTCATCTCCTCT 61.133 63.158 0.00 0.00 0.00 3.69
1446 3335 3.245346 TCACACCATGGGACGGCA 61.245 61.111 18.09 0.00 0.00 5.69
1505 3406 8.723942 AAACATTGACTGGTAGAGCTAATTAG 57.276 34.615 8.20 8.20 0.00 1.73
1507 3408 7.575720 GCAAAACATTGACTGGTAGAGCTAATT 60.576 37.037 0.00 0.00 0.00 1.40
1509 3410 5.181245 GCAAAACATTGACTGGTAGAGCTAA 59.819 40.000 0.00 0.00 0.00 3.09
1510 3411 4.695455 GCAAAACATTGACTGGTAGAGCTA 59.305 41.667 0.00 0.00 0.00 3.32
1511 3412 3.503748 GCAAAACATTGACTGGTAGAGCT 59.496 43.478 0.00 0.00 0.00 4.09
1527 3428 2.808543 CACACACTAGAGGAGGCAAAAC 59.191 50.000 0.00 0.00 0.00 2.43
1608 3525 7.750903 ACATTCGATTTTAGTTTAGCAGAAAGC 59.249 33.333 0.00 0.00 46.19 3.51
1635 3978 3.181329 TCTGAATCCTGGCTCTTGGTAA 58.819 45.455 0.00 0.00 0.00 2.85
1636 3979 2.768527 CTCTGAATCCTGGCTCTTGGTA 59.231 50.000 0.00 0.00 0.00 3.25
1762 4129 2.165167 AGCATCCGCAATAATCATGGG 58.835 47.619 0.00 0.00 42.27 4.00
2064 4536 6.844696 TGAACACTGTCACTAGAAAATGTC 57.155 37.500 0.00 0.00 0.00 3.06
2325 4811 8.229970 GGGGTAATCCTCCTTTTCGTAAAAAGA 61.230 40.741 11.24 2.38 43.20 2.52
2332 4818 1.208776 CGGGGTAATCCTCCTTTTCGT 59.791 52.381 0.00 0.00 35.33 3.85
2339 4825 2.076803 AAGGCCGGGGTAATCCTCC 61.077 63.158 2.18 0.00 35.33 4.30
2426 4915 5.098211 GCCATTTAGAGCACTGATTTTCAC 58.902 41.667 0.00 0.00 0.00 3.18
2553 5042 4.124851 AGGGTTTCTGCTAAGTATGTCG 57.875 45.455 0.00 0.00 0.00 4.35
2614 6421 7.519032 TTGGGTTTACCTAGTCTTTTTGATG 57.481 36.000 0.00 0.00 41.11 3.07
2627 6434 5.279106 GCCGAGTTTTATTTTGGGTTTACCT 60.279 40.000 0.00 0.00 41.11 3.08
2727 6538 2.210961 GCCGAGTTCTGGGCTTTATAC 58.789 52.381 16.51 0.00 45.93 1.47
2805 6616 1.792301 CTCTCCGTTAGCGTCGACA 59.208 57.895 17.16 0.00 36.15 4.35
2817 6628 0.596083 GATGTCACGATGGCTCTCCG 60.596 60.000 0.00 0.00 34.14 4.63
2864 6678 2.096958 GGCAATTTTCGGAAACTTTGCG 60.097 45.455 26.99 8.98 46.40 4.85
2875 6689 5.664870 GAAAATACACTCGGCAATTTTCG 57.335 39.130 0.00 0.00 38.09 3.46
2879 6693 5.365403 TTTCGAAAATACACTCGGCAATT 57.635 34.783 8.44 0.00 35.76 2.32
2897 6711 7.425915 TTTCGAAACTTTGTTGTGTATTTCG 57.574 32.000 6.47 9.90 45.92 3.46
2918 6732 7.861630 TCTGTAATACACTCAGCAAAGTTTTC 58.138 34.615 0.00 0.00 0.00 2.29
2981 6795 0.917939 CCGCGGTGTGTTTTGAAAAC 59.082 50.000 19.50 13.55 0.00 2.43
2991 6805 2.149803 TAGTCCAGAACCGCGGTGTG 62.150 60.000 34.95 29.91 0.00 3.82
2996 6810 0.373716 GCAAATAGTCCAGAACCGCG 59.626 55.000 0.00 0.00 0.00 6.46
3029 6843 5.342330 CGAAATACTCGGCAAAAATTTCG 57.658 39.130 15.49 15.49 46.82 3.46
3067 6883 1.675641 GGTCAGGCTGGCAATCGTT 60.676 57.895 22.23 0.00 0.00 3.85
3068 6884 2.045926 GGTCAGGCTGGCAATCGT 60.046 61.111 22.23 0.00 0.00 3.73
3090 6906 4.504916 CTGGGCGCCTCTCTGACG 62.505 72.222 28.56 1.96 0.00 4.35
3124 6940 0.473755 TCAGTCAAGGTGCCACATGT 59.526 50.000 0.00 0.00 0.00 3.21
3296 7119 2.152016 GGACTACTTGTGCTTGGAACC 58.848 52.381 0.00 0.00 33.97 3.62
3327 7151 7.653647 TGAATTTGTACATGTTTGGGTACTTC 58.346 34.615 2.30 0.00 40.34 3.01
3435 7259 6.818142 TCATATTTGTAGTATCGCATCATGGG 59.182 38.462 0.00 0.00 0.00 4.00
3840 7669 1.195448 CAGCACCACACTTCGAACATC 59.805 52.381 0.00 0.00 0.00 3.06
3843 7672 0.861837 CTCAGCACCACACTTCGAAC 59.138 55.000 0.00 0.00 0.00 3.95
3863 7692 1.271982 ACTACGGTTCTCAGCCTCTGA 60.272 52.381 0.00 0.00 38.25 3.27
3865 7694 2.645802 CTACTACGGTTCTCAGCCTCT 58.354 52.381 0.00 0.00 0.00 3.69
3928 7757 1.315257 ATCCAACAATGTGCCGCTCC 61.315 55.000 0.00 0.00 0.00 4.70
4018 7847 4.478699 TCTTGCAGCTTTTCAATCATTCG 58.521 39.130 0.00 0.00 0.00 3.34
4055 7884 4.025061 CCTCATCTTGCTCATTTTAGCTCG 60.025 45.833 0.00 0.00 43.19 5.03
4065 7894 2.440409 GGCTTTTCCTCATCTTGCTCA 58.560 47.619 0.00 0.00 0.00 4.26
4212 8043 2.753452 TGGCTCGACTCGTTATTCTTCT 59.247 45.455 0.00 0.00 0.00 2.85
4418 8249 4.220382 ACCAATTGTACATGACCACAATGG 59.780 41.667 18.77 20.33 42.93 3.16
4637 8471 0.372679 CTCGTACAACTCGCGAGCTA 59.627 55.000 34.83 18.81 44.03 3.32
4667 8501 3.334691 TGAAAACGAGCTCGAATCCAAT 58.665 40.909 40.58 15.39 43.02 3.16
4687 8521 3.386613 AACTCGACTCGACTCGTTATG 57.613 47.619 13.05 6.30 35.10 1.90
4688 8522 3.001127 GCTAACTCGACTCGACTCGTTAT 59.999 47.826 13.05 4.76 35.10 1.89
4723 8557 1.139734 CTCGGCTCGCTAAAGCTCA 59.860 57.895 0.00 0.00 42.13 4.26
5442 9360 3.578978 TGCCCTGATTTGCATTGGATAT 58.421 40.909 0.00 0.00 31.31 1.63
5506 9424 3.354948 TCATCAATGGAGGAACAGGTG 57.645 47.619 0.00 0.00 29.53 4.00
5548 10815 5.009310 GCAATCTGACATGAATAGATGGCAA 59.991 40.000 21.86 0.00 43.93 4.52
5685 10952 3.549299 AGAGCACGAAATCAAAGCTTG 57.451 42.857 0.00 0.00 35.36 4.01
6029 11303 3.833442 CTCATGTGCTTGACAGTACGTA 58.167 45.455 0.00 0.00 38.43 3.57
6030 11304 2.677199 CTCATGTGCTTGACAGTACGT 58.323 47.619 0.00 0.00 38.43 3.57
6031 11305 1.391485 GCTCATGTGCTTGACAGTACG 59.609 52.381 12.42 0.00 38.43 3.67
6032 11306 2.414481 CAGCTCATGTGCTTGACAGTAC 59.586 50.000 19.25 0.00 41.98 2.73
6211 11489 0.179084 ACATTGATCGGCCTGTACGG 60.179 55.000 0.00 0.00 0.00 4.02
6311 11590 7.745620 TTCTTGGGAGCTTTAGAGTTTTAAG 57.254 36.000 0.00 0.00 0.00 1.85
6312 11591 8.706322 ATTTCTTGGGAGCTTTAGAGTTTTAA 57.294 30.769 0.00 0.00 0.00 1.52
6313 11592 7.393515 GGATTTCTTGGGAGCTTTAGAGTTTTA 59.606 37.037 0.00 0.00 0.00 1.52
6314 11593 6.209589 GGATTTCTTGGGAGCTTTAGAGTTTT 59.790 38.462 0.00 0.00 0.00 2.43
6315 11594 5.712446 GGATTTCTTGGGAGCTTTAGAGTTT 59.288 40.000 0.00 0.00 0.00 2.66
6316 11595 5.222130 TGGATTTCTTGGGAGCTTTAGAGTT 60.222 40.000 0.00 0.00 0.00 3.01
6317 11596 4.289672 TGGATTTCTTGGGAGCTTTAGAGT 59.710 41.667 0.00 0.00 0.00 3.24
6318 11597 4.637977 GTGGATTTCTTGGGAGCTTTAGAG 59.362 45.833 0.00 0.00 0.00 2.43
6319 11598 4.567747 GGTGGATTTCTTGGGAGCTTTAGA 60.568 45.833 0.00 0.00 0.00 2.10
6320 11599 3.696548 GGTGGATTTCTTGGGAGCTTTAG 59.303 47.826 0.00 0.00 0.00 1.85
6321 11600 3.563479 GGGTGGATTTCTTGGGAGCTTTA 60.563 47.826 0.00 0.00 0.00 1.85
6322 11601 2.529632 GGTGGATTTCTTGGGAGCTTT 58.470 47.619 0.00 0.00 0.00 3.51
6323 11602 1.272704 GGGTGGATTTCTTGGGAGCTT 60.273 52.381 0.00 0.00 0.00 3.74
6324 11603 0.332972 GGGTGGATTTCTTGGGAGCT 59.667 55.000 0.00 0.00 0.00 4.09
6325 11604 0.332972 AGGGTGGATTTCTTGGGAGC 59.667 55.000 0.00 0.00 0.00 4.70
6326 11605 1.064389 GGAGGGTGGATTTCTTGGGAG 60.064 57.143 0.00 0.00 0.00 4.30
6327 11606 0.999712 GGAGGGTGGATTTCTTGGGA 59.000 55.000 0.00 0.00 0.00 4.37
6328 11607 1.002857 AGGAGGGTGGATTTCTTGGG 58.997 55.000 0.00 0.00 0.00 4.12
6329 11608 1.341383 CCAGGAGGGTGGATTTCTTGG 60.341 57.143 0.00 0.00 40.44 3.61
6330 11609 2.134789 CCAGGAGGGTGGATTTCTTG 57.865 55.000 0.00 0.00 40.44 3.02
6341 11620 0.967380 GCCACAATTCACCAGGAGGG 60.967 60.000 0.00 0.00 44.81 4.30
6342 11621 0.038744 AGCCACAATTCACCAGGAGG 59.961 55.000 0.00 0.00 42.21 4.30
6343 11622 1.542915 CAAGCCACAATTCACCAGGAG 59.457 52.381 0.00 0.00 0.00 3.69
6344 11623 1.619654 CAAGCCACAATTCACCAGGA 58.380 50.000 0.00 0.00 0.00 3.86
6345 11624 0.037975 GCAAGCCACAATTCACCAGG 60.038 55.000 0.00 0.00 0.00 4.45
6346 11625 0.387622 CGCAAGCCACAATTCACCAG 60.388 55.000 0.00 0.00 0.00 4.00
6381 11660 1.574702 GGGACAGCTACACGTTTGCC 61.575 60.000 0.00 0.00 0.00 4.52
6387 11666 2.126071 CCACGGGACAGCTACACG 60.126 66.667 12.15 12.15 40.19 4.49
6403 11682 1.141053 CTATACCTGACAACTGGGGCC 59.859 57.143 0.00 0.00 39.06 5.80
6413 11692 1.134491 AGCAAACCGGCTATACCTGAC 60.134 52.381 0.00 0.00 43.70 3.51
6443 11722 1.586154 GGAGATGTGTTGGGCAACGG 61.586 60.000 0.00 0.00 43.94 4.44
6446 11725 0.888736 CACGGAGATGTGTTGGGCAA 60.889 55.000 0.00 0.00 35.12 4.52
6448 11727 0.605319 TTCACGGAGATGTGTTGGGC 60.605 55.000 0.00 0.00 40.74 5.36
6452 11731 1.416401 ACTGGTTCACGGAGATGTGTT 59.584 47.619 0.00 0.00 40.74 3.32
6460 11739 1.074084 AGAGAGAGACTGGTTCACGGA 59.926 52.381 0.00 0.00 0.00 4.69
6591 11870 4.576053 CGAATGTTGCTGGAATTGGATCTA 59.424 41.667 0.00 0.00 0.00 1.98
6598 11877 1.185315 CCCCGAATGTTGCTGGAATT 58.815 50.000 0.00 0.00 0.00 2.17
6603 11882 0.947244 GATAGCCCCGAATGTTGCTG 59.053 55.000 0.00 0.00 35.34 4.41
6627 11906 1.588139 GCTCGATTGGTACGTCGGG 60.588 63.158 12.10 10.51 41.41 5.14
6630 11909 0.864797 GTCGGCTCGATTGGTACGTC 60.865 60.000 0.00 0.00 38.42 4.34
6634 11913 2.103538 GCGTCGGCTCGATTGGTA 59.896 61.111 0.67 0.00 38.42 3.25
6654 11933 2.433436 GTTCAATCCTAGGGTTTGCGT 58.567 47.619 3.90 0.00 33.73 5.24
6701 11980 4.106925 GGGAGGAGCTGTGGCCTG 62.107 72.222 3.32 0.00 39.73 4.85
6732 12011 3.786101 CGAGGAGAACACGCATGG 58.214 61.111 0.00 0.00 0.00 3.66
6739 12018 1.888436 AAGGCGATGCGAGGAGAACA 61.888 55.000 0.00 0.00 0.00 3.18
6749 12028 2.821688 GCTGCAGAGAAGGCGATGC 61.822 63.158 20.43 0.00 39.14 3.91
6789 12068 2.505777 CTGACCAGAGTCGCAGCG 60.506 66.667 9.06 9.06 46.74 5.18
6836 12115 4.914420 CCGCGCGCACCACAAAAA 62.914 61.111 32.61 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.