Multiple sequence alignment - TraesCS2D01G535500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G535500 chr2D 100.000 4530 0 0 505 5034 618324804 618320275 0.000000e+00 8366.0
1 TraesCS2D01G535500 chr2D 100.000 286 0 0 1 286 618325308 618325023 3.450000e-146 529.0
2 TraesCS2D01G535500 chr2D 100.000 60 0 0 882 941 39670692 39670633 1.480000e-20 111.0
3 TraesCS2D01G535500 chr1A 97.447 1998 35 3 988 2969 564159794 564157797 0.000000e+00 3393.0
4 TraesCS2D01G535500 chr1A 97.602 1710 33 4 2967 4675 564157557 564155855 0.000000e+00 2924.0
5 TraesCS2D01G535500 chr1A 97.354 378 10 0 505 882 564160170 564159793 1.180000e-180 643.0
6 TraesCS2D01G535500 chr1A 92.727 110 6 1 112 219 564160739 564160630 1.880000e-34 158.0
7 TraesCS2D01G535500 chr7A 97.396 1997 37 2 988 2969 542714787 542716783 0.000000e+00 3386.0
8 TraesCS2D01G535500 chr7A 96.116 2008 52 5 988 2969 660572250 660574257 0.000000e+00 3253.0
9 TraesCS2D01G535500 chr7A 97.778 1710 28 5 2967 4675 542717024 542718724 0.000000e+00 2939.0
10 TraesCS2D01G535500 chr7A 97.090 378 11 0 505 882 542714411 542714788 5.500000e-179 638.0
11 TraesCS2D01G535500 chr7A 90.860 186 14 2 104 286 542713798 542713983 3.890000e-61 246.0
12 TraesCS2D01G535500 chr6A 96.864 2009 35 3 988 2969 603905929 603907936 0.000000e+00 3336.0
13 TraesCS2D01G535500 chr6A 96.254 2002 55 4 988 2969 435090150 435088149 0.000000e+00 3264.0
14 TraesCS2D01G535500 chr6A 96.570 379 12 1 505 882 603905552 603905930 1.190000e-175 627.0
15 TraesCS2D01G535500 chr6A 100.000 60 0 0 882 941 64696195 64696136 1.480000e-20 111.0
16 TraesCS2D01G535500 chr6B 96.760 2006 41 2 988 2969 18463671 18461666 0.000000e+00 3323.0
17 TraesCS2D01G535500 chr6B 96.413 2007 46 5 988 2969 18465706 18467711 0.000000e+00 3284.0
18 TraesCS2D01G535500 chr6B 96.199 1710 55 5 2967 4675 18467952 18469652 0.000000e+00 2789.0
19 TraesCS2D01G535500 chr6B 94.224 277 15 1 4676 4951 125496683 125496959 6.030000e-114 422.0
20 TraesCS2D01G535500 chr7B 96.660 2006 42 3 988 2969 660101987 660103991 0.000000e+00 3310.0
21 TraesCS2D01G535500 chr7B 96.478 1079 29 4 2967 4045 660104232 660105301 0.000000e+00 1773.0
22 TraesCS2D01G535500 chr7B 91.873 283 20 3 4676 4956 622502659 622502378 4.720000e-105 392.0
23 TraesCS2D01G535500 chr7B 92.419 277 16 2 4676 4951 166777964 166778236 1.700000e-104 390.0
24 TraesCS2D01G535500 chr7B 91.011 267 17 6 5 268 660101346 660101608 2.230000e-93 353.0
25 TraesCS2D01G535500 chr3B 96.610 2006 41 3 988 2969 228015000 228017002 0.000000e+00 3302.0
26 TraesCS2D01G535500 chr3B 93.214 280 18 1 4676 4955 328611362 328611084 1.300000e-110 411.0
27 TraesCS2D01G535500 chr3B 100.000 60 0 0 882 941 201621429 201621370 1.480000e-20 111.0
28 TraesCS2D01G535500 chr3A 97.117 1908 41 4 1074 2969 126051593 126053498 0.000000e+00 3206.0
29 TraesCS2D01G535500 chr3A 97.493 1715 33 5 2967 4679 144700139 144701845 0.000000e+00 2920.0
30 TraesCS2D01G535500 chr3A 97.261 1716 35 5 2967 4680 126053739 126055444 0.000000e+00 2898.0
31 TraesCS2D01G535500 chr3A 96.032 378 15 0 505 882 144697527 144697904 2.580000e-172 616.0
32 TraesCS2D01G535500 chr3A 96.277 376 10 2 507 882 126038172 126038543 9.260000e-172 614.0
33 TraesCS2D01G535500 chr3A 90.860 186 14 2 104 286 144697010 144697195 3.890000e-61 246.0
34 TraesCS2D01G535500 chr5D 94.450 1982 101 7 988 2969 34210687 34212659 0.000000e+00 3042.0
35 TraesCS2D01G535500 chr6D 97.602 1710 32 4 2967 4675 39063814 39062113 0.000000e+00 2922.0
36 TraesCS2D01G535500 chr6D 96.199 1184 17 3 988 2146 39065285 39064105 0.000000e+00 1912.0
37 TraesCS2D01G535500 chr6D 97.354 378 10 0 505 882 39065661 39065284 1.180000e-180 643.0
38 TraesCS2D01G535500 chr4A 97.081 1713 40 5 2967 4678 147533515 147531812 0.000000e+00 2878.0
39 TraesCS2D01G535500 chr4A 98.249 971 14 1 988 1955 147535712 147534742 0.000000e+00 1696.0
40 TraesCS2D01G535500 chr4A 97.884 378 8 0 505 882 147536088 147535711 0.000000e+00 654.0
41 TraesCS2D01G535500 chr4A 91.667 180 12 2 110 286 147536354 147536175 3.890000e-61 246.0
42 TraesCS2D01G535500 chr4A 100.000 28 0 0 187 214 410961486 410961459 9.000000e-03 52.8
43 TraesCS2D01G535500 chr4B 96.667 1710 48 4 2967 4675 167376278 167374577 0.000000e+00 2833.0
44 TraesCS2D01G535500 chr4B 96.447 1182 18 3 988 2145 167378034 167376853 0.000000e+00 1929.0
45 TraesCS2D01G535500 chr4B 96.042 379 13 2 505 882 167378410 167378033 2.580000e-172 616.0
46 TraesCS2D01G535500 chr2B 96.259 1711 54 5 2967 4676 311908216 311906515 0.000000e+00 2796.0
47 TraesCS2D01G535500 chr2B 95.238 378 16 2 506 882 311925568 311925192 9.330000e-167 597.0
48 TraesCS2D01G535500 chr2B 91.923 260 19 2 4676 4934 25221943 25222201 3.700000e-96 363.0
49 TraesCS2D01G535500 chr2B 100.000 60 0 0 882 941 391274846 391274905 1.480000e-20 111.0
50 TraesCS2D01G535500 chr4D 96.390 277 9 1 4676 4951 61598036 61598312 5.940000e-124 455.0
51 TraesCS2D01G535500 chr5B 92.058 277 18 2 4676 4951 565094454 565094181 2.200000e-103 387.0
52 TraesCS2D01G535500 chr5B 92.339 248 19 0 4680 4927 505146821 505147068 2.230000e-93 353.0
53 TraesCS2D01G535500 chr3D 94.142 239 12 2 4676 4913 111850319 111850556 3.700000e-96 363.0
54 TraesCS2D01G535500 chrUn 100.000 60 0 0 882 941 257863092 257863033 1.480000e-20 111.0
55 TraesCS2D01G535500 chr7D 100.000 60 0 0 882 941 203537687 203537628 1.480000e-20 111.0
56 TraesCS2D01G535500 chr7D 100.000 60 0 0 882 941 606920374 606920433 1.480000e-20 111.0
57 TraesCS2D01G535500 chr1B 100.000 60 0 0 882 941 135043080 135043139 1.480000e-20 111.0
58 TraesCS2D01G535500 chr1B 100.000 60 0 0 882 941 638735107 638735048 1.480000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G535500 chr2D 618320275 618325308 5033 True 4447.500000 8366 100.000000 1 5034 2 chr2D.!!$R2 5033
1 TraesCS2D01G535500 chr1A 564155855 564160739 4884 True 1779.500000 3393 96.282500 112 4675 4 chr1A.!!$R1 4563
2 TraesCS2D01G535500 chr7A 660572250 660574257 2007 False 3253.000000 3253 96.116000 988 2969 1 chr7A.!!$F1 1981
3 TraesCS2D01G535500 chr7A 542713798 542718724 4926 False 1802.250000 3386 95.781000 104 4675 4 chr7A.!!$F2 4571
4 TraesCS2D01G535500 chr6A 435088149 435090150 2001 True 3264.000000 3264 96.254000 988 2969 1 chr6A.!!$R2 1981
5 TraesCS2D01G535500 chr6A 603905552 603907936 2384 False 1981.500000 3336 96.717000 505 2969 2 chr6A.!!$F1 2464
6 TraesCS2D01G535500 chr6B 18461666 18463671 2005 True 3323.000000 3323 96.760000 988 2969 1 chr6B.!!$R1 1981
7 TraesCS2D01G535500 chr6B 18465706 18469652 3946 False 3036.500000 3284 96.306000 988 4675 2 chr6B.!!$F2 3687
8 TraesCS2D01G535500 chr7B 660101346 660105301 3955 False 1812.000000 3310 94.716333 5 4045 3 chr7B.!!$F2 4040
9 TraesCS2D01G535500 chr3B 228015000 228017002 2002 False 3302.000000 3302 96.610000 988 2969 1 chr3B.!!$F1 1981
10 TraesCS2D01G535500 chr3A 126051593 126055444 3851 False 3052.000000 3206 97.189000 1074 4680 2 chr3A.!!$F2 3606
11 TraesCS2D01G535500 chr3A 144697010 144701845 4835 False 1260.666667 2920 94.795000 104 4679 3 chr3A.!!$F3 4575
12 TraesCS2D01G535500 chr5D 34210687 34212659 1972 False 3042.000000 3042 94.450000 988 2969 1 chr5D.!!$F1 1981
13 TraesCS2D01G535500 chr6D 39062113 39065661 3548 True 1825.666667 2922 97.051667 505 4675 3 chr6D.!!$R1 4170
14 TraesCS2D01G535500 chr4A 147531812 147536354 4542 True 1368.500000 2878 96.220250 110 4678 4 chr4A.!!$R2 4568
15 TraesCS2D01G535500 chr4B 167374577 167378410 3833 True 1792.666667 2833 96.385333 505 4675 3 chr4B.!!$R1 4170
16 TraesCS2D01G535500 chr2B 311906515 311908216 1701 True 2796.000000 2796 96.259000 2967 4676 1 chr2B.!!$R1 1709

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
913 1372 0.319813 AAATGAAAAGCACAGCCGCC 60.320 50.000 0.00 0.0 0.00 6.13 F
917 1376 0.673644 GAAAAGCACAGCCGCCTCTA 60.674 55.000 0.00 0.0 0.00 2.43 F
2392 2966 0.179089 CAGCTGGCTAGTGCTACTGG 60.179 60.000 5.57 0.0 37.81 4.00 F
3279 4096 1.066002 TGCTTCACTTGCTTCACTTGC 59.934 47.619 0.00 0.0 0.00 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2392 2966 0.381801 CCAACTATGGCCATCAACGC 59.618 55.000 24.80 0.0 40.58 4.84 R
2726 3300 2.212652 CTAAGATATGCAGTTGCCGCA 58.787 47.619 1.06 0.0 44.94 5.69 R
3337 4154 1.270826 GTCTTTGCCCTCTTCTTTGGC 59.729 52.381 0.00 0.0 45.56 4.52 R
4855 5673 0.034337 TTACCAGGCCACGAGTGAAC 59.966 55.000 5.01 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 2.378634 CCCTTCTGCCCCCGATTCT 61.379 63.158 0.00 0.00 0.00 2.40
86 87 1.411651 CCCCGATTCCCCTTCTCCTC 61.412 65.000 0.00 0.00 0.00 3.71
108 109 0.454600 CGAGACCTAAACCTAGCGCA 59.545 55.000 11.47 0.00 0.00 6.09
181 184 1.760875 GAGGTGGACGAGGGCCATA 60.761 63.158 6.18 0.00 37.81 2.74
753 1211 5.189342 TGGATCCCAAATGCAACATATTTGT 59.811 36.000 9.90 0.00 41.60 2.83
905 1364 8.945481 TGAAAGATCAAAGAAAATGAAAAGCA 57.055 26.923 0.00 0.00 30.99 3.91
906 1365 8.819974 TGAAAGATCAAAGAAAATGAAAAGCAC 58.180 29.630 0.00 0.00 30.99 4.40
907 1366 8.721019 AAAGATCAAAGAAAATGAAAAGCACA 57.279 26.923 0.00 0.00 0.00 4.57
908 1367 7.941795 AGATCAAAGAAAATGAAAAGCACAG 57.058 32.000 0.00 0.00 0.00 3.66
909 1368 5.971895 TCAAAGAAAATGAAAAGCACAGC 57.028 34.783 0.00 0.00 0.00 4.40
910 1369 4.810491 TCAAAGAAAATGAAAAGCACAGCC 59.190 37.500 0.00 0.00 0.00 4.85
911 1370 3.017265 AGAAAATGAAAAGCACAGCCG 57.983 42.857 0.00 0.00 0.00 5.52
912 1371 1.456923 GAAAATGAAAAGCACAGCCGC 59.543 47.619 0.00 0.00 0.00 6.53
913 1372 0.319813 AAATGAAAAGCACAGCCGCC 60.320 50.000 0.00 0.00 0.00 6.13
914 1373 1.181098 AATGAAAAGCACAGCCGCCT 61.181 50.000 0.00 0.00 0.00 5.52
915 1374 1.589716 ATGAAAAGCACAGCCGCCTC 61.590 55.000 0.00 0.00 0.00 4.70
916 1375 1.968540 GAAAAGCACAGCCGCCTCT 60.969 57.895 0.00 0.00 0.00 3.69
917 1376 0.673644 GAAAAGCACAGCCGCCTCTA 60.674 55.000 0.00 0.00 0.00 2.43
918 1377 0.955919 AAAAGCACAGCCGCCTCTAC 60.956 55.000 0.00 0.00 0.00 2.59
919 1378 2.804828 AAAGCACAGCCGCCTCTACC 62.805 60.000 0.00 0.00 0.00 3.18
920 1379 3.775654 GCACAGCCGCCTCTACCT 61.776 66.667 0.00 0.00 0.00 3.08
921 1380 2.423898 GCACAGCCGCCTCTACCTA 61.424 63.158 0.00 0.00 0.00 3.08
922 1381 1.736586 CACAGCCGCCTCTACCTAG 59.263 63.158 0.00 0.00 0.00 3.02
923 1382 0.752009 CACAGCCGCCTCTACCTAGA 60.752 60.000 0.00 0.00 0.00 2.43
925 1384 1.529713 AGCCGCCTCTACCTAGAGC 60.530 63.158 4.05 0.31 46.57 4.09
926 1385 1.828660 GCCGCCTCTACCTAGAGCA 60.829 63.158 4.05 0.00 46.57 4.26
927 1386 1.392710 GCCGCCTCTACCTAGAGCAA 61.393 60.000 4.05 0.00 46.57 3.91
928 1387 1.112113 CCGCCTCTACCTAGAGCAAA 58.888 55.000 4.05 0.00 46.57 3.68
929 1388 1.067821 CCGCCTCTACCTAGAGCAAAG 59.932 57.143 4.05 0.00 46.57 2.77
930 1389 2.025155 CGCCTCTACCTAGAGCAAAGA 58.975 52.381 4.05 0.00 46.57 2.52
931 1390 2.427453 CGCCTCTACCTAGAGCAAAGAA 59.573 50.000 4.05 0.00 46.57 2.52
932 1391 3.490078 CGCCTCTACCTAGAGCAAAGAAG 60.490 52.174 4.05 0.00 46.57 2.85
933 1392 3.739830 GCCTCTACCTAGAGCAAAGAAGC 60.740 52.174 4.05 0.00 46.57 3.86
935 1394 4.161377 CCTCTACCTAGAGCAAAGAAGCTT 59.839 45.833 0.00 0.00 46.75 3.74
936 1395 5.337975 CCTCTACCTAGAGCAAAGAAGCTTT 60.338 44.000 0.00 0.00 46.75 3.51
937 1396 5.482908 TCTACCTAGAGCAAAGAAGCTTTG 58.517 41.667 13.92 13.92 46.75 2.77
945 1404 4.556942 GCAAAGAAGCTTTGCCAATTTT 57.443 36.364 26.21 0.00 46.51 1.82
946 1405 4.923893 GCAAAGAAGCTTTGCCAATTTTT 58.076 34.783 26.21 0.00 46.51 1.94
947 1406 4.971830 GCAAAGAAGCTTTGCCAATTTTTC 59.028 37.500 26.21 3.93 46.51 2.29
948 1407 5.513376 CAAAGAAGCTTTGCCAATTTTTCC 58.487 37.500 0.00 0.00 0.00 3.13
949 1408 4.694760 AGAAGCTTTGCCAATTTTTCCT 57.305 36.364 0.00 0.00 0.00 3.36
950 1409 5.039920 AGAAGCTTTGCCAATTTTTCCTT 57.960 34.783 0.00 0.00 0.00 3.36
951 1410 5.439721 AGAAGCTTTGCCAATTTTTCCTTT 58.560 33.333 0.00 0.00 0.00 3.11
952 1411 5.887598 AGAAGCTTTGCCAATTTTTCCTTTT 59.112 32.000 0.00 0.00 0.00 2.27
953 1412 6.377996 AGAAGCTTTGCCAATTTTTCCTTTTT 59.622 30.769 0.00 0.00 0.00 1.94
1175 1635 2.739913 CGCCTCGTTATTTGGAAGTTGA 59.260 45.455 0.00 0.00 0.00 3.18
1535 2004 1.039068 CCTGATCATGAGAGCGAGGT 58.961 55.000 0.09 0.00 31.29 3.85
1692 2245 2.519963 GCAGAGTTTAAATTGGCGCTC 58.480 47.619 7.64 0.00 0.00 5.03
1697 2250 2.673368 AGTTTAAATTGGCGCTCTCTCG 59.327 45.455 7.64 0.00 0.00 4.04
1848 2402 7.283625 TGAGTGCACAGTAATGGTAATTTTT 57.716 32.000 21.04 0.00 0.00 1.94
2390 2964 1.519719 GCAGCTGGCTAGTGCTACT 59.480 57.895 17.12 0.00 40.25 2.57
2392 2966 0.179089 CAGCTGGCTAGTGCTACTGG 60.179 60.000 5.57 0.00 37.81 4.00
2558 3132 4.008074 ACCAGTGATGACAGGTGTAAAG 57.992 45.455 0.00 0.00 40.35 1.85
2726 3300 1.753073 GCAATGGACATAGCAAAGCCT 59.247 47.619 0.00 0.00 0.00 4.58
2900 3474 8.090788 ACTTCTTTGATAAGGTTAGGCAGATA 57.909 34.615 0.00 0.00 32.02 1.98
2943 3517 2.026729 AGGAGGAAAGTAGCAAGGAAGC 60.027 50.000 0.00 0.00 0.00 3.86
2980 3797 6.985653 TCTTCCCCACATTGACAAATTTAA 57.014 33.333 0.00 0.00 0.00 1.52
3158 3975 1.956477 GGCCAACACTTATGCCCTATG 59.044 52.381 0.00 0.00 37.94 2.23
3271 4088 3.278574 TGTGTAACTTGCTTCACTTGCT 58.721 40.909 0.00 0.00 38.04 3.91
3273 4090 4.201910 TGTGTAACTTGCTTCACTTGCTTC 60.202 41.667 0.00 0.00 38.04 3.86
3274 4091 3.944650 TGTAACTTGCTTCACTTGCTTCA 59.055 39.130 0.00 0.00 0.00 3.02
3275 4092 3.427161 AACTTGCTTCACTTGCTTCAC 57.573 42.857 0.00 0.00 0.00 3.18
3276 4093 2.648059 ACTTGCTTCACTTGCTTCACT 58.352 42.857 0.00 0.00 0.00 3.41
3277 4094 3.019564 ACTTGCTTCACTTGCTTCACTT 58.980 40.909 0.00 0.00 0.00 3.16
3278 4095 3.181493 ACTTGCTTCACTTGCTTCACTTG 60.181 43.478 0.00 0.00 0.00 3.16
3279 4096 1.066002 TGCTTCACTTGCTTCACTTGC 59.934 47.619 0.00 0.00 0.00 4.01
3280 4097 1.066002 GCTTCACTTGCTTCACTTGCA 59.934 47.619 0.00 0.00 38.80 4.08
3337 4154 1.204704 TGTTGCTCATGTAGAGGACCG 59.795 52.381 0.00 0.00 45.06 4.79
3536 4353 7.849515 CCTACAACTACGAAAAAGAGAAAACAC 59.150 37.037 0.00 0.00 0.00 3.32
4023 4840 1.207593 CACGAAGCAAAAGGAGGCG 59.792 57.895 0.00 0.00 34.54 5.52
4370 5188 6.778821 TCATCAAAATACAAGGAGGTTCTGA 58.221 36.000 0.00 0.00 0.00 3.27
4371 5189 7.230747 TCATCAAAATACAAGGAGGTTCTGAA 58.769 34.615 0.00 0.00 0.00 3.02
4478 5296 3.068590 ACCATTGCTTTTGACTTCCAGTG 59.931 43.478 0.00 0.00 0.00 3.66
4678 5496 6.125719 GGCCAAATAAGGAATTCTCTCTTCT 58.874 40.000 5.23 0.00 0.00 2.85
4681 5499 8.526978 GCCAAATAAGGAATTCTCTCTTCTTTT 58.473 33.333 5.23 2.72 0.00 2.27
4682 5500 9.852091 CCAAATAAGGAATTCTCTCTTCTTTTG 57.148 33.333 5.23 12.30 0.00 2.44
4687 5505 8.930846 AAGGAATTCTCTCTTCTTTTGAATGA 57.069 30.769 5.23 0.00 37.85 2.57
4688 5506 8.930846 AGGAATTCTCTCTTCTTTTGAATGAA 57.069 30.769 5.23 0.00 37.85 2.57
4689 5507 9.012161 AGGAATTCTCTCTTCTTTTGAATGAAG 57.988 33.333 5.23 11.19 39.94 3.02
4690 5508 9.007901 GGAATTCTCTCTTCTTTTGAATGAAGA 57.992 33.333 16.45 16.45 43.01 2.87
4701 5519 8.810652 TCTTTTGAATGAAGATTAAAAACCGG 57.189 30.769 0.00 0.00 31.23 5.28
4702 5520 8.634444 TCTTTTGAATGAAGATTAAAAACCGGA 58.366 29.630 9.46 0.00 31.23 5.14
4703 5521 9.423061 CTTTTGAATGAAGATTAAAAACCGGAT 57.577 29.630 9.46 0.00 31.23 4.18
4704 5522 8.980143 TTTGAATGAAGATTAAAAACCGGATC 57.020 30.769 9.46 0.00 0.00 3.36
4705 5523 7.938140 TGAATGAAGATTAAAAACCGGATCT 57.062 32.000 9.46 0.88 0.00 2.75
4706 5524 7.761409 TGAATGAAGATTAAAAACCGGATCTG 58.239 34.615 9.46 0.00 0.00 2.90
4707 5525 5.560966 TGAAGATTAAAAACCGGATCTGC 57.439 39.130 9.46 3.72 0.00 4.26
4708 5526 4.398044 TGAAGATTAAAAACCGGATCTGCC 59.602 41.667 9.46 1.62 0.00 4.85
4709 5527 4.236527 AGATTAAAAACCGGATCTGCCT 57.763 40.909 9.46 0.00 0.00 4.75
4710 5528 4.200092 AGATTAAAAACCGGATCTGCCTC 58.800 43.478 9.46 0.00 0.00 4.70
4711 5529 2.413310 TAAAAACCGGATCTGCCTCC 57.587 50.000 9.46 0.00 0.00 4.30
4720 5538 2.240279 GGATCTGCCTCCGTACATAGT 58.760 52.381 0.00 0.00 0.00 2.12
4721 5539 3.418995 GGATCTGCCTCCGTACATAGTA 58.581 50.000 0.00 0.00 0.00 1.82
4722 5540 3.190953 GGATCTGCCTCCGTACATAGTAC 59.809 52.174 0.00 0.00 0.00 2.73
4723 5541 3.572632 TCTGCCTCCGTACATAGTACT 57.427 47.619 0.00 0.00 0.00 2.73
4724 5542 3.894759 TCTGCCTCCGTACATAGTACTT 58.105 45.455 0.00 0.00 0.00 2.24
4725 5543 3.881688 TCTGCCTCCGTACATAGTACTTC 59.118 47.826 0.00 0.00 0.00 3.01
4726 5544 3.623703 TGCCTCCGTACATAGTACTTCA 58.376 45.455 0.00 0.00 0.00 3.02
4727 5545 4.018490 TGCCTCCGTACATAGTACTTCAA 58.982 43.478 0.00 0.00 0.00 2.69
4728 5546 4.097437 TGCCTCCGTACATAGTACTTCAAG 59.903 45.833 0.00 0.00 0.00 3.02
4729 5547 4.097589 GCCTCCGTACATAGTACTTCAAGT 59.902 45.833 0.00 0.00 0.00 3.16
4730 5548 5.393896 GCCTCCGTACATAGTACTTCAAGTT 60.394 44.000 0.00 0.00 0.00 2.66
4731 5549 6.034591 CCTCCGTACATAGTACTTCAAGTTG 58.965 44.000 0.00 0.00 0.00 3.16
4732 5550 6.127814 CCTCCGTACATAGTACTTCAAGTTGA 60.128 42.308 0.00 0.08 0.00 3.18
4733 5551 6.615088 TCCGTACATAGTACTTCAAGTTGAC 58.385 40.000 4.68 0.00 0.00 3.18
4734 5552 5.803967 CCGTACATAGTACTTCAAGTTGACC 59.196 44.000 4.68 0.00 0.00 4.02
4735 5553 6.349944 CCGTACATAGTACTTCAAGTTGACCT 60.350 42.308 4.68 2.27 0.00 3.85
4736 5554 7.088905 CGTACATAGTACTTCAAGTTGACCTT 58.911 38.462 4.68 0.00 0.00 3.50
4749 5567 7.972832 CAAGTTGACCTTGTACTTATAACCA 57.027 36.000 0.00 0.00 44.64 3.67
4750 5568 8.385898 CAAGTTGACCTTGTACTTATAACCAA 57.614 34.615 0.00 0.00 44.64 3.67
4751 5569 9.010029 CAAGTTGACCTTGTACTTATAACCAAT 57.990 33.333 0.00 0.00 44.64 3.16
4752 5570 8.788325 AGTTGACCTTGTACTTATAACCAATC 57.212 34.615 0.00 0.00 0.00 2.67
4753 5571 7.827729 AGTTGACCTTGTACTTATAACCAATCC 59.172 37.037 0.00 0.00 0.00 3.01
4754 5572 7.260387 TGACCTTGTACTTATAACCAATCCA 57.740 36.000 0.00 0.00 0.00 3.41
4755 5573 7.691213 TGACCTTGTACTTATAACCAATCCAA 58.309 34.615 0.00 0.00 0.00 3.53
4756 5574 7.827236 TGACCTTGTACTTATAACCAATCCAAG 59.173 37.037 0.00 0.00 0.00 3.61
4757 5575 7.696017 ACCTTGTACTTATAACCAATCCAAGT 58.304 34.615 0.00 0.00 34.10 3.16
4758 5576 7.827729 ACCTTGTACTTATAACCAATCCAAGTC 59.172 37.037 0.00 0.00 32.09 3.01
4759 5577 7.011109 CCTTGTACTTATAACCAATCCAAGTCG 59.989 40.741 0.00 0.00 32.09 4.18
4760 5578 5.813672 TGTACTTATAACCAATCCAAGTCGC 59.186 40.000 0.00 0.00 32.09 5.19
4761 5579 5.099042 ACTTATAACCAATCCAAGTCGCT 57.901 39.130 0.00 0.00 0.00 4.93
4762 5580 6.229936 ACTTATAACCAATCCAAGTCGCTA 57.770 37.500 0.00 0.00 0.00 4.26
4763 5581 6.281405 ACTTATAACCAATCCAAGTCGCTAG 58.719 40.000 0.00 0.00 0.00 3.42
4764 5582 2.403252 AACCAATCCAAGTCGCTAGG 57.597 50.000 0.00 0.00 0.00 3.02
4765 5583 1.276622 ACCAATCCAAGTCGCTAGGT 58.723 50.000 0.00 0.00 0.00 3.08
4766 5584 1.066143 ACCAATCCAAGTCGCTAGGTG 60.066 52.381 0.00 0.00 0.00 4.00
4767 5585 1.009829 CAATCCAAGTCGCTAGGTGC 58.990 55.000 0.00 0.00 38.57 5.01
4768 5586 0.613260 AATCCAAGTCGCTAGGTGCA 59.387 50.000 0.00 0.00 43.06 4.57
4769 5587 0.176680 ATCCAAGTCGCTAGGTGCAG 59.823 55.000 0.00 0.00 43.06 4.41
4770 5588 1.185618 TCCAAGTCGCTAGGTGCAGT 61.186 55.000 0.00 0.00 43.06 4.40
4771 5589 1.016130 CCAAGTCGCTAGGTGCAGTG 61.016 60.000 0.00 0.00 43.06 3.66
4772 5590 1.016130 CAAGTCGCTAGGTGCAGTGG 61.016 60.000 0.00 0.00 43.06 4.00
4773 5591 2.788191 AAGTCGCTAGGTGCAGTGGC 62.788 60.000 0.00 0.00 43.06 5.01
4774 5592 2.997315 TCGCTAGGTGCAGTGGCT 60.997 61.111 0.00 0.00 43.06 4.75
4775 5593 2.816958 CGCTAGGTGCAGTGGCTG 60.817 66.667 0.00 0.00 43.06 4.85
4776 5594 2.665000 GCTAGGTGCAGTGGCTGA 59.335 61.111 0.00 0.00 42.31 4.26
4777 5595 1.449246 GCTAGGTGCAGTGGCTGAG 60.449 63.158 0.00 0.00 42.31 3.35
4778 5596 1.220206 CTAGGTGCAGTGGCTGAGG 59.780 63.158 0.00 0.00 41.91 3.86
4779 5597 1.229177 TAGGTGCAGTGGCTGAGGA 60.229 57.895 0.00 0.00 41.91 3.71
4780 5598 1.544825 TAGGTGCAGTGGCTGAGGAC 61.545 60.000 0.00 0.00 41.91 3.85
4781 5599 2.740055 GTGCAGTGGCTGAGGACG 60.740 66.667 0.00 0.00 41.91 4.79
4782 5600 4.687215 TGCAGTGGCTGAGGACGC 62.687 66.667 0.00 0.00 41.91 5.19
4783 5601 4.687215 GCAGTGGCTGAGGACGCA 62.687 66.667 0.00 0.00 36.96 5.24
4784 5602 2.433838 CAGTGGCTGAGGACGCAG 60.434 66.667 0.00 0.00 38.91 5.18
4798 5616 2.582498 GCAGCCGTACAGCGTAGG 60.582 66.667 0.00 2.73 39.32 3.18
4799 5617 2.882876 CAGCCGTACAGCGTAGGT 59.117 61.111 0.00 0.00 39.32 3.08
4800 5618 1.226603 CAGCCGTACAGCGTAGGTC 60.227 63.158 0.00 0.00 39.32 3.85
4801 5619 2.277756 GCCGTACAGCGTAGGTCG 60.278 66.667 0.00 0.00 43.12 4.79
4810 5628 3.803082 CGTAGGTCGCCGGTTCGA 61.803 66.667 1.90 0.56 35.95 3.71
4811 5629 2.568090 GTAGGTCGCCGGTTCGAA 59.432 61.111 1.90 0.00 40.43 3.71
4812 5630 1.140375 GTAGGTCGCCGGTTCGAAT 59.860 57.895 1.90 0.00 40.43 3.34
4813 5631 0.869028 GTAGGTCGCCGGTTCGAATC 60.869 60.000 1.90 0.00 40.43 2.52
4814 5632 2.008268 TAGGTCGCCGGTTCGAATCC 62.008 60.000 1.90 3.11 40.43 3.01
4815 5633 2.125832 GTCGCCGGTTCGAATCCA 60.126 61.111 1.90 0.00 40.43 3.41
4816 5634 1.738830 GTCGCCGGTTCGAATCCAA 60.739 57.895 1.90 0.00 40.43 3.53
4817 5635 1.738830 TCGCCGGTTCGAATCCAAC 60.739 57.895 1.90 0.00 35.31 3.77
4818 5636 2.746803 CGCCGGTTCGAATCCAACC 61.747 63.158 1.90 0.00 40.12 3.77
4819 5637 1.673009 GCCGGTTCGAATCCAACCA 60.673 57.895 10.25 0.00 43.23 3.67
4820 5638 1.644786 GCCGGTTCGAATCCAACCAG 61.645 60.000 10.25 0.00 43.23 4.00
4821 5639 1.024579 CCGGTTCGAATCCAACCAGG 61.025 60.000 10.25 8.08 43.23 4.45
4822 5640 1.644786 CGGTTCGAATCCAACCAGGC 61.645 60.000 10.25 0.00 43.23 4.85
4823 5641 0.322546 GGTTCGAATCCAACCAGGCT 60.323 55.000 4.88 0.00 42.68 4.58
4824 5642 1.534729 GTTCGAATCCAACCAGGCTT 58.465 50.000 0.00 0.00 37.29 4.35
4825 5643 1.886542 GTTCGAATCCAACCAGGCTTT 59.113 47.619 0.00 0.00 37.29 3.51
4826 5644 3.078837 GTTCGAATCCAACCAGGCTTTA 58.921 45.455 0.00 0.00 37.29 1.85
4827 5645 3.426787 TCGAATCCAACCAGGCTTTAA 57.573 42.857 0.00 0.00 37.29 1.52
4828 5646 3.963129 TCGAATCCAACCAGGCTTTAAT 58.037 40.909 0.00 0.00 37.29 1.40
4829 5647 4.340617 TCGAATCCAACCAGGCTTTAATT 58.659 39.130 0.00 0.00 37.29 1.40
4830 5648 4.770010 TCGAATCCAACCAGGCTTTAATTT 59.230 37.500 0.00 0.00 37.29 1.82
4831 5649 5.245075 TCGAATCCAACCAGGCTTTAATTTT 59.755 36.000 0.00 0.00 37.29 1.82
4832 5650 5.931724 CGAATCCAACCAGGCTTTAATTTTT 59.068 36.000 0.00 0.00 37.29 1.94
4833 5651 6.090763 CGAATCCAACCAGGCTTTAATTTTTC 59.909 38.462 0.00 0.00 37.29 2.29
4834 5652 4.877282 TCCAACCAGGCTTTAATTTTTCG 58.123 39.130 0.00 0.00 37.29 3.46
4835 5653 4.342665 TCCAACCAGGCTTTAATTTTTCGT 59.657 37.500 0.00 0.00 37.29 3.85
4836 5654 5.053811 CCAACCAGGCTTTAATTTTTCGTT 58.946 37.500 0.00 0.00 0.00 3.85
4837 5655 5.525745 CCAACCAGGCTTTAATTTTTCGTTT 59.474 36.000 0.00 0.00 0.00 3.60
4838 5656 6.418141 CAACCAGGCTTTAATTTTTCGTTTG 58.582 36.000 0.00 0.00 0.00 2.93
4839 5657 5.666462 ACCAGGCTTTAATTTTTCGTTTGT 58.334 33.333 0.00 0.00 0.00 2.83
4840 5658 6.807789 ACCAGGCTTTAATTTTTCGTTTGTA 58.192 32.000 0.00 0.00 0.00 2.41
4841 5659 6.921307 ACCAGGCTTTAATTTTTCGTTTGTAG 59.079 34.615 0.00 0.00 0.00 2.74
4842 5660 6.128929 CCAGGCTTTAATTTTTCGTTTGTAGC 60.129 38.462 0.00 0.00 0.00 3.58
4843 5661 5.627780 AGGCTTTAATTTTTCGTTTGTAGCG 59.372 36.000 0.00 0.00 0.00 4.26
4844 5662 5.400188 GGCTTTAATTTTTCGTTTGTAGCGT 59.600 36.000 0.00 0.00 0.00 5.07
4845 5663 6.074729 GGCTTTAATTTTTCGTTTGTAGCGTT 60.075 34.615 0.00 0.00 0.00 4.84
4846 5664 7.331792 GCTTTAATTTTTCGTTTGTAGCGTTT 58.668 30.769 0.00 0.00 0.00 3.60
4847 5665 7.842239 GCTTTAATTTTTCGTTTGTAGCGTTTT 59.158 29.630 0.00 0.00 0.00 2.43
4848 5666 9.678247 CTTTAATTTTTCGTTTGTAGCGTTTTT 57.322 25.926 0.00 0.00 0.00 1.94
4867 5685 4.742438 TTTTCTTATGTTCACTCGTGGC 57.258 40.909 0.00 0.00 0.00 5.01
4868 5686 2.380084 TCTTATGTTCACTCGTGGCC 57.620 50.000 0.00 0.00 0.00 5.36
4869 5687 1.899814 TCTTATGTTCACTCGTGGCCT 59.100 47.619 3.32 0.00 0.00 5.19
4870 5688 2.002586 CTTATGTTCACTCGTGGCCTG 58.997 52.381 3.32 0.00 0.00 4.85
4871 5689 0.249120 TATGTTCACTCGTGGCCTGG 59.751 55.000 3.32 0.00 0.00 4.45
4872 5690 1.768684 ATGTTCACTCGTGGCCTGGT 61.769 55.000 3.32 0.00 0.00 4.00
4873 5691 1.116536 TGTTCACTCGTGGCCTGGTA 61.117 55.000 3.32 0.00 0.00 3.25
4874 5692 0.034337 GTTCACTCGTGGCCTGGTAA 59.966 55.000 3.32 0.00 0.00 2.85
4875 5693 0.981183 TTCACTCGTGGCCTGGTAAT 59.019 50.000 3.32 0.00 0.00 1.89
4876 5694 0.249120 TCACTCGTGGCCTGGTAATG 59.751 55.000 3.32 0.00 0.00 1.90
4877 5695 0.744414 CACTCGTGGCCTGGTAATGG 60.744 60.000 3.32 0.00 0.00 3.16
4878 5696 1.153168 CTCGTGGCCTGGTAATGGG 60.153 63.158 3.32 0.00 0.00 4.00
4884 5702 4.894896 CCTGGTAATGGGCCGGCC 62.895 72.222 38.57 38.57 0.00 6.13
4922 5740 2.918571 CGGAAGCTCTGCTGTTTGA 58.081 52.632 0.00 0.00 39.62 2.69
4923 5741 1.229428 CGGAAGCTCTGCTGTTTGAA 58.771 50.000 0.00 0.00 39.62 2.69
4924 5742 1.196354 CGGAAGCTCTGCTGTTTGAAG 59.804 52.381 0.00 0.00 39.62 3.02
4925 5743 1.068679 GGAAGCTCTGCTGTTTGAAGC 60.069 52.381 0.00 0.00 39.62 3.86
4926 5744 1.878734 GAAGCTCTGCTGTTTGAAGCT 59.121 47.619 0.00 0.00 43.90 3.74
4927 5745 2.847327 AGCTCTGCTGTTTGAAGCTA 57.153 45.000 2.46 0.00 43.90 3.32
4928 5746 3.131709 AGCTCTGCTGTTTGAAGCTAA 57.868 42.857 2.46 0.00 43.90 3.09
4929 5747 2.810852 AGCTCTGCTGTTTGAAGCTAAC 59.189 45.455 2.46 0.00 43.90 2.34
4930 5748 2.412065 GCTCTGCTGTTTGAAGCTAACG 60.412 50.000 0.00 0.00 43.90 3.18
4931 5749 3.059884 CTCTGCTGTTTGAAGCTAACGA 58.940 45.455 0.00 0.00 43.90 3.85
4932 5750 3.059884 TCTGCTGTTTGAAGCTAACGAG 58.940 45.455 0.00 0.00 43.90 4.18
4944 5762 2.805845 GCTAACGAGCGTCAAATAGGA 58.194 47.619 0.00 0.00 39.39 2.94
4945 5763 2.789893 GCTAACGAGCGTCAAATAGGAG 59.210 50.000 0.00 0.00 39.39 3.69
4946 5764 1.641577 AACGAGCGTCAAATAGGAGC 58.358 50.000 0.00 0.00 0.00 4.70
4947 5765 0.818296 ACGAGCGTCAAATAGGAGCT 59.182 50.000 0.00 0.00 41.29 4.09
4949 5767 1.859383 GAGCGTCAAATAGGAGCTCC 58.141 55.000 26.22 26.22 46.00 4.70
4950 5768 0.466124 AGCGTCAAATAGGAGCTCCC 59.534 55.000 29.54 10.94 36.42 4.30
4951 5769 0.533085 GCGTCAAATAGGAGCTCCCC 60.533 60.000 29.54 6.19 36.42 4.81
4952 5770 0.249489 CGTCAAATAGGAGCTCCCCG 60.249 60.000 29.54 15.21 36.42 5.73
4953 5771 0.831307 GTCAAATAGGAGCTCCCCGT 59.169 55.000 29.54 13.83 36.42 5.28
4954 5772 1.209747 GTCAAATAGGAGCTCCCCGTT 59.790 52.381 29.54 17.93 36.42 4.44
4955 5773 1.209504 TCAAATAGGAGCTCCCCGTTG 59.790 52.381 29.54 26.28 36.42 4.10
4956 5774 1.209504 CAAATAGGAGCTCCCCGTTGA 59.790 52.381 29.54 8.27 36.42 3.18
4957 5775 1.580059 AATAGGAGCTCCCCGTTGAA 58.420 50.000 29.54 6.65 36.42 2.69
4958 5776 1.580059 ATAGGAGCTCCCCGTTGAAA 58.420 50.000 29.54 5.22 36.42 2.69
4959 5777 0.611714 TAGGAGCTCCCCGTTGAAAC 59.388 55.000 29.54 0.00 36.42 2.78
4970 5788 2.004583 CGTTGAAACGCATAGGAGGA 57.995 50.000 2.23 0.00 46.06 3.71
4971 5789 1.927174 CGTTGAAACGCATAGGAGGAG 59.073 52.381 2.23 0.00 46.06 3.69
4972 5790 2.416836 CGTTGAAACGCATAGGAGGAGA 60.417 50.000 2.23 0.00 46.06 3.71
4973 5791 3.190874 GTTGAAACGCATAGGAGGAGAG 58.809 50.000 0.00 0.00 0.00 3.20
4974 5792 1.757118 TGAAACGCATAGGAGGAGAGG 59.243 52.381 0.00 0.00 0.00 3.69
4975 5793 1.069358 GAAACGCATAGGAGGAGAGGG 59.931 57.143 0.00 0.00 0.00 4.30
4976 5794 0.760945 AACGCATAGGAGGAGAGGGG 60.761 60.000 0.00 0.00 0.00 4.79
4977 5795 1.910772 CGCATAGGAGGAGAGGGGG 60.911 68.421 0.00 0.00 0.00 5.40
4978 5796 2.220586 GCATAGGAGGAGAGGGGGC 61.221 68.421 0.00 0.00 0.00 5.80
4979 5797 1.910772 CATAGGAGGAGAGGGGGCG 60.911 68.421 0.00 0.00 0.00 6.13
4980 5798 2.091924 ATAGGAGGAGAGGGGGCGA 61.092 63.158 0.00 0.00 0.00 5.54
4981 5799 1.665948 ATAGGAGGAGAGGGGGCGAA 61.666 60.000 0.00 0.00 0.00 4.70
4982 5800 1.665948 TAGGAGGAGAGGGGGCGAAT 61.666 60.000 0.00 0.00 0.00 3.34
4983 5801 2.812619 GGAGGAGAGGGGGCGAATG 61.813 68.421 0.00 0.00 0.00 2.67
4984 5802 1.762460 GAGGAGAGGGGGCGAATGA 60.762 63.158 0.00 0.00 0.00 2.57
4985 5803 1.753368 GAGGAGAGGGGGCGAATGAG 61.753 65.000 0.00 0.00 0.00 2.90
4986 5804 1.762460 GGAGAGGGGGCGAATGAGA 60.762 63.158 0.00 0.00 0.00 3.27
4987 5805 1.745264 GAGAGGGGGCGAATGAGAG 59.255 63.158 0.00 0.00 0.00 3.20
4988 5806 1.002274 AGAGGGGGCGAATGAGAGT 59.998 57.895 0.00 0.00 0.00 3.24
4989 5807 0.618968 AGAGGGGGCGAATGAGAGTT 60.619 55.000 0.00 0.00 0.00 3.01
4990 5808 1.120530 GAGGGGGCGAATGAGAGTTA 58.879 55.000 0.00 0.00 0.00 2.24
4991 5809 1.069358 GAGGGGGCGAATGAGAGTTAG 59.931 57.143 0.00 0.00 0.00 2.34
4992 5810 1.120530 GGGGGCGAATGAGAGTTAGA 58.879 55.000 0.00 0.00 0.00 2.10
4993 5811 1.694696 GGGGGCGAATGAGAGTTAGAT 59.305 52.381 0.00 0.00 0.00 1.98
4994 5812 2.548920 GGGGGCGAATGAGAGTTAGATG 60.549 54.545 0.00 0.00 0.00 2.90
4995 5813 2.548920 GGGGCGAATGAGAGTTAGATGG 60.549 54.545 0.00 0.00 0.00 3.51
4996 5814 2.548920 GGGCGAATGAGAGTTAGATGGG 60.549 54.545 0.00 0.00 0.00 4.00
4997 5815 2.139118 GCGAATGAGAGTTAGATGGGC 58.861 52.381 0.00 0.00 0.00 5.36
4998 5816 2.760374 CGAATGAGAGTTAGATGGGCC 58.240 52.381 0.00 0.00 0.00 5.80
4999 5817 2.103094 CGAATGAGAGTTAGATGGGCCA 59.897 50.000 9.61 9.61 0.00 5.36
5000 5818 3.737850 GAATGAGAGTTAGATGGGCCAG 58.262 50.000 13.78 0.00 0.00 4.85
5001 5819 2.550277 TGAGAGTTAGATGGGCCAGA 57.450 50.000 13.78 0.00 0.00 3.86
5002 5820 2.111384 TGAGAGTTAGATGGGCCAGAC 58.889 52.381 13.78 8.98 0.00 3.51
5003 5821 1.414550 GAGAGTTAGATGGGCCAGACC 59.585 57.143 13.78 3.60 37.93 3.85
5004 5822 1.204146 GAGTTAGATGGGCCAGACCA 58.796 55.000 13.78 0.00 46.24 4.02
5005 5823 0.912486 AGTTAGATGGGCCAGACCAC 59.088 55.000 13.78 6.48 44.72 4.16
5006 5824 0.618458 GTTAGATGGGCCAGACCACA 59.382 55.000 13.78 0.00 44.72 4.17
5007 5825 1.212935 GTTAGATGGGCCAGACCACAT 59.787 52.381 13.78 0.00 44.72 3.21
5008 5826 1.595311 TAGATGGGCCAGACCACATT 58.405 50.000 13.78 0.00 44.72 2.71
5009 5827 0.706433 AGATGGGCCAGACCACATTT 59.294 50.000 13.78 0.00 44.72 2.32
5010 5828 1.106285 GATGGGCCAGACCACATTTC 58.894 55.000 13.78 0.00 44.72 2.17
5011 5829 0.324645 ATGGGCCAGACCACATTTCC 60.325 55.000 13.78 0.00 44.72 3.13
5012 5830 1.076549 GGGCCAGACCACATTTCCA 59.923 57.895 4.39 0.00 42.05 3.53
5013 5831 1.250840 GGGCCAGACCACATTTCCAC 61.251 60.000 4.39 0.00 42.05 4.02
5014 5832 0.539438 GGCCAGACCACATTTCCACA 60.539 55.000 0.00 0.00 38.86 4.17
5015 5833 0.598065 GCCAGACCACATTTCCACAC 59.402 55.000 0.00 0.00 0.00 3.82
5016 5834 0.874390 CCAGACCACATTTCCACACG 59.126 55.000 0.00 0.00 0.00 4.49
5017 5835 1.593196 CAGACCACATTTCCACACGT 58.407 50.000 0.00 0.00 0.00 4.49
5018 5836 1.946768 CAGACCACATTTCCACACGTT 59.053 47.619 0.00 0.00 0.00 3.99
5019 5837 2.032030 CAGACCACATTTCCACACGTTC 60.032 50.000 0.00 0.00 0.00 3.95
5020 5838 2.158813 AGACCACATTTCCACACGTTCT 60.159 45.455 0.00 0.00 0.00 3.01
5021 5839 1.946768 ACCACATTTCCACACGTTCTG 59.053 47.619 0.00 0.00 0.00 3.02
5022 5840 1.266718 CCACATTTCCACACGTTCTGG 59.733 52.381 2.95 2.95 0.00 3.86
5023 5841 1.946768 CACATTTCCACACGTTCTGGT 59.053 47.619 8.56 0.00 0.00 4.00
5024 5842 2.357637 CACATTTCCACACGTTCTGGTT 59.642 45.455 8.56 0.00 0.00 3.67
5025 5843 3.020984 ACATTTCCACACGTTCTGGTTT 58.979 40.909 8.56 0.00 0.00 3.27
5026 5844 3.181491 ACATTTCCACACGTTCTGGTTTG 60.181 43.478 8.56 7.58 0.00 2.93
5027 5845 1.384525 TTCCACACGTTCTGGTTTGG 58.615 50.000 8.56 0.00 38.76 3.28
5028 5846 0.464735 TCCACACGTTCTGGTTTGGG 60.465 55.000 8.56 0.00 38.12 4.12
5029 5847 0.464735 CCACACGTTCTGGTTTGGGA 60.465 55.000 1.34 0.00 34.76 4.37
5030 5848 1.384525 CACACGTTCTGGTTTGGGAA 58.615 50.000 0.00 0.00 0.00 3.97
5031 5849 1.064952 CACACGTTCTGGTTTGGGAAC 59.935 52.381 0.00 0.00 38.60 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 3.420482 AATCGGGGGCAGAAGGGG 61.420 66.667 0.00 0.00 0.00 4.79
86 87 0.751452 GCTAGGTTTAGGTCTCGGGG 59.249 60.000 0.00 0.00 0.00 5.73
149 152 4.247380 CCTCGCCCTCCTCCATGC 62.247 72.222 0.00 0.00 0.00 4.06
223 226 4.821589 GCCTCGCCCGTCCTTCAG 62.822 72.222 0.00 0.00 0.00 3.02
236 239 4.489771 CCCCACCATGACCGCCTC 62.490 72.222 0.00 0.00 0.00 4.70
268 272 3.462678 GCCCGTCCTCCAGGAGTC 61.463 72.222 15.86 7.21 46.49 3.36
753 1211 5.482908 GACAAATCTAGAAGAGAGGTGCAA 58.517 41.667 0.00 0.00 37.70 4.08
824 1283 8.125978 TCCATCTCTAAGTTCAAATTTTGCAT 57.874 30.769 4.19 0.00 0.00 3.96
880 1339 8.819974 GTGCTTTTCATTTTCTTTGATCTTTCA 58.180 29.630 0.00 0.00 0.00 2.69
881 1340 8.819974 TGTGCTTTTCATTTTCTTTGATCTTTC 58.180 29.630 0.00 0.00 0.00 2.62
882 1341 8.721019 TGTGCTTTTCATTTTCTTTGATCTTT 57.279 26.923 0.00 0.00 0.00 2.52
883 1342 7.042254 GCTGTGCTTTTCATTTTCTTTGATCTT 60.042 33.333 0.00 0.00 0.00 2.40
884 1343 6.423001 GCTGTGCTTTTCATTTTCTTTGATCT 59.577 34.615 0.00 0.00 0.00 2.75
885 1344 6.347160 GGCTGTGCTTTTCATTTTCTTTGATC 60.347 38.462 0.00 0.00 0.00 2.92
886 1345 5.467735 GGCTGTGCTTTTCATTTTCTTTGAT 59.532 36.000 0.00 0.00 0.00 2.57
887 1346 4.810491 GGCTGTGCTTTTCATTTTCTTTGA 59.190 37.500 0.00 0.00 0.00 2.69
888 1347 4.318263 CGGCTGTGCTTTTCATTTTCTTTG 60.318 41.667 0.00 0.00 0.00 2.77
889 1348 3.803778 CGGCTGTGCTTTTCATTTTCTTT 59.196 39.130 0.00 0.00 0.00 2.52
890 1349 3.383761 CGGCTGTGCTTTTCATTTTCTT 58.616 40.909 0.00 0.00 0.00 2.52
891 1350 2.863704 GCGGCTGTGCTTTTCATTTTCT 60.864 45.455 0.00 0.00 0.00 2.52
892 1351 1.456923 GCGGCTGTGCTTTTCATTTTC 59.543 47.619 0.00 0.00 0.00 2.29
893 1352 1.501169 GCGGCTGTGCTTTTCATTTT 58.499 45.000 0.00 0.00 0.00 1.82
894 1353 0.319813 GGCGGCTGTGCTTTTCATTT 60.320 50.000 0.00 0.00 34.52 2.32
895 1354 1.181098 AGGCGGCTGTGCTTTTCATT 61.181 50.000 12.25 0.00 34.52 2.57
896 1355 1.589716 GAGGCGGCTGTGCTTTTCAT 61.590 55.000 19.63 0.00 34.52 2.57
897 1356 2.203337 AGGCGGCTGTGCTTTTCA 60.203 55.556 12.25 0.00 34.52 2.69
898 1357 0.673644 TAGAGGCGGCTGTGCTTTTC 60.674 55.000 19.63 0.00 34.52 2.29
899 1358 0.955919 GTAGAGGCGGCTGTGCTTTT 60.956 55.000 19.63 0.00 34.52 2.27
900 1359 1.376037 GTAGAGGCGGCTGTGCTTT 60.376 57.895 19.63 0.00 34.52 3.51
901 1360 2.266055 GTAGAGGCGGCTGTGCTT 59.734 61.111 19.63 0.00 34.52 3.91
902 1361 2.856039 TAGGTAGAGGCGGCTGTGCT 62.856 60.000 19.63 10.42 34.52 4.40
903 1362 2.356818 CTAGGTAGAGGCGGCTGTGC 62.357 65.000 19.63 17.20 0.00 4.57
904 1363 0.752009 TCTAGGTAGAGGCGGCTGTG 60.752 60.000 19.63 0.00 0.00 3.66
905 1364 0.466555 CTCTAGGTAGAGGCGGCTGT 60.467 60.000 19.63 16.79 44.71 4.40
906 1365 2.336341 CTCTAGGTAGAGGCGGCTG 58.664 63.158 19.63 0.00 44.71 4.85
907 1366 4.911901 CTCTAGGTAGAGGCGGCT 57.088 61.111 13.09 13.09 44.71 5.52
914 1373 5.482908 CAAAGCTTCTTTGCTCTAGGTAGA 58.517 41.667 0.00 0.00 43.24 2.59
915 1374 5.793026 CAAAGCTTCTTTGCTCTAGGTAG 57.207 43.478 0.00 0.00 43.24 3.18
925 1384 5.297527 AGGAAAAATTGGCAAAGCTTCTTTG 59.702 36.000 3.01 13.31 0.00 2.77
926 1385 5.439721 AGGAAAAATTGGCAAAGCTTCTTT 58.560 33.333 3.01 0.00 0.00 2.52
927 1386 5.039920 AGGAAAAATTGGCAAAGCTTCTT 57.960 34.783 3.01 0.82 0.00 2.52
928 1387 4.694760 AGGAAAAATTGGCAAAGCTTCT 57.305 36.364 3.01 0.00 0.00 2.85
929 1388 5.756195 AAAGGAAAAATTGGCAAAGCTTC 57.244 34.783 3.01 6.98 0.00 3.86
930 1389 6.528537 AAAAAGGAAAAATTGGCAAAGCTT 57.471 29.167 3.01 0.00 0.00 3.74
975 1434 7.897864 TCCTGTAAAAACCAGAAAGACAAAAA 58.102 30.769 0.00 0.00 31.38 1.94
976 1435 7.469537 TCCTGTAAAAACCAGAAAGACAAAA 57.530 32.000 0.00 0.00 31.38 2.44
977 1436 7.417342 CCATCCTGTAAAAACCAGAAAGACAAA 60.417 37.037 0.00 0.00 31.38 2.83
978 1437 6.040391 CCATCCTGTAAAAACCAGAAAGACAA 59.960 38.462 0.00 0.00 31.38 3.18
979 1438 5.534654 CCATCCTGTAAAAACCAGAAAGACA 59.465 40.000 0.00 0.00 31.38 3.41
980 1439 5.768164 TCCATCCTGTAAAAACCAGAAAGAC 59.232 40.000 0.00 0.00 31.38 3.01
981 1440 5.947663 TCCATCCTGTAAAAACCAGAAAGA 58.052 37.500 0.00 0.00 31.38 2.52
982 1441 6.403636 CGATCCATCCTGTAAAAACCAGAAAG 60.404 42.308 0.00 0.00 31.38 2.62
983 1442 5.414454 CGATCCATCCTGTAAAAACCAGAAA 59.586 40.000 0.00 0.00 31.38 2.52
984 1443 4.941263 CGATCCATCCTGTAAAAACCAGAA 59.059 41.667 0.00 0.00 31.38 3.02
985 1444 4.224147 TCGATCCATCCTGTAAAAACCAGA 59.776 41.667 0.00 0.00 31.38 3.86
986 1445 4.513442 TCGATCCATCCTGTAAAAACCAG 58.487 43.478 0.00 0.00 0.00 4.00
1175 1635 9.102757 GAACATCATCATAGTACTGAACATGTT 57.897 33.333 11.78 11.78 40.55 2.71
1460 1929 6.158695 ACAAGGAACCATGATAAGAGGTACAT 59.841 38.462 3.07 0.00 34.63 2.29
1535 2004 0.743688 GCTCTCATCCTCGCTCTCAA 59.256 55.000 0.00 0.00 0.00 3.02
1692 2245 1.469703 TGTTTGATTGCATGCCGAGAG 59.530 47.619 16.68 0.00 0.00 3.20
1697 2250 5.122554 TCAAATTCATGTTTGATTGCATGCC 59.877 36.000 16.68 0.00 41.70 4.40
2392 2966 0.381801 CCAACTATGGCCATCAACGC 59.618 55.000 24.80 0.00 40.58 4.84
2726 3300 2.212652 CTAAGATATGCAGTTGCCGCA 58.787 47.619 1.06 0.00 44.94 5.69
2900 3474 5.532406 CCTTCGGTTCCACATGATCATAATT 59.468 40.000 8.15 0.00 0.00 1.40
2943 3517 2.171003 GGGAAGAATCAACCCAACCAG 58.829 52.381 9.27 0.00 42.81 4.00
2980 3797 1.879575 TAGTTGGTCATAGGCTGCCT 58.120 50.000 26.52 26.52 37.71 4.75
3158 3975 3.838244 TGATGCCCATAGTCCTTACAC 57.162 47.619 0.00 0.00 0.00 2.90
3337 4154 1.270826 GTCTTTGCCCTCTTCTTTGGC 59.729 52.381 0.00 0.00 45.56 4.52
3536 4353 5.985530 TGATGCTCCAGTAATTGAGTTATCG 59.014 40.000 0.00 0.00 32.17 2.92
3985 4802 3.515286 CTCATTGCAGGGCTGGCG 61.515 66.667 0.00 0.00 0.00 5.69
4478 5296 5.005299 GTGTAGTTTGTGACCAAAATTGTGC 59.995 40.000 0.00 0.00 41.99 4.57
4653 5471 5.456921 AGAGAGAATTCCTTATTTGGCCA 57.543 39.130 0.00 0.00 0.00 5.36
4678 5496 9.418045 GATCCGGTTTTTAATCTTCATTCAAAA 57.582 29.630 0.00 0.00 0.00 2.44
4681 5499 7.628366 GCAGATCCGGTTTTTAATCTTCATTCA 60.628 37.037 0.00 0.00 0.00 2.57
4682 5500 6.693113 GCAGATCCGGTTTTTAATCTTCATTC 59.307 38.462 0.00 0.00 0.00 2.67
4683 5501 6.405842 GGCAGATCCGGTTTTTAATCTTCATT 60.406 38.462 0.00 0.00 0.00 2.57
4684 5502 5.067805 GGCAGATCCGGTTTTTAATCTTCAT 59.932 40.000 0.00 0.00 0.00 2.57
4685 5503 4.398044 GGCAGATCCGGTTTTTAATCTTCA 59.602 41.667 0.00 0.00 0.00 3.02
4686 5504 4.640647 AGGCAGATCCGGTTTTTAATCTTC 59.359 41.667 0.00 0.00 40.77 2.87
4687 5505 4.600062 AGGCAGATCCGGTTTTTAATCTT 58.400 39.130 0.00 0.00 40.77 2.40
4688 5506 4.200092 GAGGCAGATCCGGTTTTTAATCT 58.800 43.478 0.00 0.00 40.77 2.40
4689 5507 3.315470 GGAGGCAGATCCGGTTTTTAATC 59.685 47.826 0.00 0.00 40.77 1.75
4690 5508 3.288092 GGAGGCAGATCCGGTTTTTAAT 58.712 45.455 0.00 0.00 40.77 1.40
4691 5509 2.718563 GGAGGCAGATCCGGTTTTTAA 58.281 47.619 0.00 0.00 40.77 1.52
4692 5510 2.413310 GGAGGCAGATCCGGTTTTTA 57.587 50.000 0.00 0.00 40.77 1.52
4693 5511 3.266240 GGAGGCAGATCCGGTTTTT 57.734 52.632 0.00 0.00 40.77 1.94
4700 5518 2.240279 ACTATGTACGGAGGCAGATCC 58.760 52.381 0.00 0.00 35.88 3.36
4701 5519 4.073549 AGTACTATGTACGGAGGCAGATC 58.926 47.826 0.00 0.00 0.00 2.75
4702 5520 4.101645 AGTACTATGTACGGAGGCAGAT 57.898 45.455 0.00 0.00 0.00 2.90
4703 5521 3.572632 AGTACTATGTACGGAGGCAGA 57.427 47.619 0.00 0.00 0.00 4.26
4704 5522 3.630769 TGAAGTACTATGTACGGAGGCAG 59.369 47.826 0.00 0.00 0.00 4.85
4705 5523 3.623703 TGAAGTACTATGTACGGAGGCA 58.376 45.455 0.00 0.00 0.00 4.75
4706 5524 4.097589 ACTTGAAGTACTATGTACGGAGGC 59.902 45.833 0.00 0.00 0.00 4.70
4707 5525 5.831702 ACTTGAAGTACTATGTACGGAGG 57.168 43.478 0.00 0.00 0.00 4.30
4708 5526 6.746364 GTCAACTTGAAGTACTATGTACGGAG 59.254 42.308 0.00 0.00 0.00 4.63
4709 5527 6.349611 GGTCAACTTGAAGTACTATGTACGGA 60.350 42.308 0.00 0.00 0.00 4.69
4710 5528 5.803967 GGTCAACTTGAAGTACTATGTACGG 59.196 44.000 0.00 0.00 0.00 4.02
4711 5529 6.618811 AGGTCAACTTGAAGTACTATGTACG 58.381 40.000 0.00 0.00 0.00 3.67
4726 5544 9.227777 GATTGGTTATAAGTACAAGGTCAACTT 57.772 33.333 0.00 0.00 41.00 2.66
4727 5545 7.827729 GGATTGGTTATAAGTACAAGGTCAACT 59.172 37.037 0.00 0.00 0.00 3.16
4728 5546 7.608761 TGGATTGGTTATAAGTACAAGGTCAAC 59.391 37.037 0.00 0.00 0.00 3.18
4729 5547 7.691213 TGGATTGGTTATAAGTACAAGGTCAA 58.309 34.615 0.00 0.00 0.00 3.18
4730 5548 7.260387 TGGATTGGTTATAAGTACAAGGTCA 57.740 36.000 0.00 0.00 0.00 4.02
4731 5549 7.827729 ACTTGGATTGGTTATAAGTACAAGGTC 59.172 37.037 12.83 4.52 37.64 3.85
4732 5550 7.696017 ACTTGGATTGGTTATAAGTACAAGGT 58.304 34.615 12.83 0.00 37.64 3.50
4733 5551 7.011109 CGACTTGGATTGGTTATAAGTACAAGG 59.989 40.741 12.83 0.00 37.64 3.61
4734 5552 7.465513 GCGACTTGGATTGGTTATAAGTACAAG 60.466 40.741 0.00 0.00 38.85 3.16
4735 5553 6.314400 GCGACTTGGATTGGTTATAAGTACAA 59.686 38.462 0.00 0.00 32.23 2.41
4736 5554 5.813672 GCGACTTGGATTGGTTATAAGTACA 59.186 40.000 0.00 0.00 32.23 2.90
4737 5555 6.047231 AGCGACTTGGATTGGTTATAAGTAC 58.953 40.000 0.00 0.00 32.23 2.73
4738 5556 6.229936 AGCGACTTGGATTGGTTATAAGTA 57.770 37.500 0.00 0.00 32.23 2.24
4739 5557 5.099042 AGCGACTTGGATTGGTTATAAGT 57.901 39.130 0.00 0.00 34.56 2.24
4740 5558 5.696724 CCTAGCGACTTGGATTGGTTATAAG 59.303 44.000 2.20 0.00 0.00 1.73
4741 5559 5.129815 ACCTAGCGACTTGGATTGGTTATAA 59.870 40.000 12.53 0.00 26.91 0.98
4742 5560 4.652421 ACCTAGCGACTTGGATTGGTTATA 59.348 41.667 12.53 0.00 26.91 0.98
4743 5561 3.454812 ACCTAGCGACTTGGATTGGTTAT 59.545 43.478 12.53 0.00 26.91 1.89
4744 5562 2.835764 ACCTAGCGACTTGGATTGGTTA 59.164 45.455 12.53 0.00 26.91 2.85
4745 5563 1.628846 ACCTAGCGACTTGGATTGGTT 59.371 47.619 12.53 0.00 26.91 3.67
4746 5564 1.066143 CACCTAGCGACTTGGATTGGT 60.066 52.381 12.53 0.00 31.70 3.67
4747 5565 1.656652 CACCTAGCGACTTGGATTGG 58.343 55.000 12.53 0.00 31.18 3.16
4748 5566 1.009829 GCACCTAGCGACTTGGATTG 58.990 55.000 12.53 4.70 31.18 2.67
4749 5567 3.460648 GCACCTAGCGACTTGGATT 57.539 52.632 12.53 0.00 31.18 3.01
4759 5577 1.449246 CTCAGCCACTGCACCTAGC 60.449 63.158 0.00 0.00 45.96 3.42
4760 5578 1.220206 CCTCAGCCACTGCACCTAG 59.780 63.158 0.00 0.00 41.13 3.02
4761 5579 1.229177 TCCTCAGCCACTGCACCTA 60.229 57.895 0.00 0.00 41.13 3.08
4762 5580 2.527624 TCCTCAGCCACTGCACCT 60.528 61.111 0.00 0.00 41.13 4.00
4763 5581 2.359230 GTCCTCAGCCACTGCACC 60.359 66.667 0.00 0.00 41.13 5.01
4764 5582 2.740055 CGTCCTCAGCCACTGCAC 60.740 66.667 0.00 0.00 41.13 4.57
4765 5583 4.687215 GCGTCCTCAGCCACTGCA 62.687 66.667 0.00 0.00 41.13 4.41
4766 5584 4.687215 TGCGTCCTCAGCCACTGC 62.687 66.667 0.00 0.00 37.95 4.40
4767 5585 2.433838 CTGCGTCCTCAGCCACTG 60.434 66.667 0.00 0.00 0.00 3.66
4773 5591 2.202623 GTACGGCTGCGTCCTCAG 60.203 66.667 0.00 0.00 37.15 3.35
4774 5592 2.986979 TGTACGGCTGCGTCCTCA 60.987 61.111 0.00 0.00 0.00 3.86
4775 5593 2.202623 CTGTACGGCTGCGTCCTC 60.203 66.667 0.00 0.00 0.00 3.71
4776 5594 4.436998 GCTGTACGGCTGCGTCCT 62.437 66.667 19.72 0.00 32.54 3.85
4793 5611 2.603135 ATTCGAACCGGCGACCTACG 62.603 60.000 9.30 7.02 40.42 3.51
4794 5612 0.869028 GATTCGAACCGGCGACCTAC 60.869 60.000 9.30 0.00 40.42 3.18
4795 5613 1.434696 GATTCGAACCGGCGACCTA 59.565 57.895 9.30 0.00 40.42 3.08
4796 5614 2.183555 GATTCGAACCGGCGACCT 59.816 61.111 9.30 0.00 40.42 3.85
4797 5615 2.889018 GGATTCGAACCGGCGACC 60.889 66.667 9.30 0.00 40.42 4.79
4798 5616 1.738830 TTGGATTCGAACCGGCGAC 60.739 57.895 9.30 0.00 40.42 5.19
4799 5617 1.738830 GTTGGATTCGAACCGGCGA 60.739 57.895 9.30 0.00 38.72 5.54
4800 5618 2.746803 GGTTGGATTCGAACCGGCG 61.747 63.158 13.86 0.00 33.85 6.46
4801 5619 1.644786 CTGGTTGGATTCGAACCGGC 61.645 60.000 21.81 3.62 45.15 6.13
4802 5620 1.024579 CCTGGTTGGATTCGAACCGG 61.025 60.000 24.89 24.89 45.15 5.28
4803 5621 1.644786 GCCTGGTTGGATTCGAACCG 61.645 60.000 21.17 16.30 45.15 4.44
4804 5622 0.322546 AGCCTGGTTGGATTCGAACC 60.323 55.000 20.23 20.23 42.90 3.62
4805 5623 1.534729 AAGCCTGGTTGGATTCGAAC 58.465 50.000 0.00 3.18 41.13 3.95
4806 5624 2.286365 AAAGCCTGGTTGGATTCGAA 57.714 45.000 0.00 0.00 44.78 3.71
4807 5625 3.426787 TTAAAGCCTGGTTGGATTCGA 57.573 42.857 0.00 0.00 44.78 3.71
4808 5626 4.718940 AATTAAAGCCTGGTTGGATTCG 57.281 40.909 0.00 0.00 44.78 3.34
4809 5627 6.090763 CGAAAAATTAAAGCCTGGTTGGATTC 59.909 38.462 0.00 0.00 44.78 2.52
4811 5629 5.011635 ACGAAAAATTAAAGCCTGGTTGGAT 59.988 36.000 0.00 0.00 38.35 3.41
4812 5630 4.342665 ACGAAAAATTAAAGCCTGGTTGGA 59.657 37.500 0.00 0.00 38.35 3.53
4813 5631 4.627058 ACGAAAAATTAAAGCCTGGTTGG 58.373 39.130 0.00 0.00 39.35 3.77
4814 5632 6.036626 ACAAACGAAAAATTAAAGCCTGGTTG 59.963 34.615 0.00 0.00 0.00 3.77
4815 5633 6.110033 ACAAACGAAAAATTAAAGCCTGGTT 58.890 32.000 0.00 0.00 0.00 3.67
4816 5634 5.666462 ACAAACGAAAAATTAAAGCCTGGT 58.334 33.333 0.00 0.00 0.00 4.00
4817 5635 6.128929 GCTACAAACGAAAAATTAAAGCCTGG 60.129 38.462 0.00 0.00 0.00 4.45
4818 5636 6.398517 CGCTACAAACGAAAAATTAAAGCCTG 60.399 38.462 0.00 0.00 0.00 4.85
4819 5637 5.627780 CGCTACAAACGAAAAATTAAAGCCT 59.372 36.000 0.00 0.00 0.00 4.58
4820 5638 5.400188 ACGCTACAAACGAAAAATTAAAGCC 59.600 36.000 0.00 0.00 0.00 4.35
4821 5639 6.428673 ACGCTACAAACGAAAAATTAAAGC 57.571 33.333 0.00 0.00 0.00 3.51
4822 5640 9.678247 AAAAACGCTACAAACGAAAAATTAAAG 57.322 25.926 0.00 0.00 0.00 1.85
4845 5663 4.023536 GGCCACGAGTGAACATAAGAAAAA 60.024 41.667 0.00 0.00 0.00 1.94
4846 5664 3.500680 GGCCACGAGTGAACATAAGAAAA 59.499 43.478 0.00 0.00 0.00 2.29
4847 5665 3.071479 GGCCACGAGTGAACATAAGAAA 58.929 45.455 0.00 0.00 0.00 2.52
4848 5666 2.301870 AGGCCACGAGTGAACATAAGAA 59.698 45.455 5.01 0.00 0.00 2.52
4849 5667 1.899814 AGGCCACGAGTGAACATAAGA 59.100 47.619 5.01 0.00 0.00 2.10
4850 5668 2.002586 CAGGCCACGAGTGAACATAAG 58.997 52.381 5.01 0.00 0.00 1.73
4851 5669 1.338674 CCAGGCCACGAGTGAACATAA 60.339 52.381 5.01 0.00 0.00 1.90
4852 5670 0.249120 CCAGGCCACGAGTGAACATA 59.751 55.000 5.01 0.00 0.00 2.29
4853 5671 1.003355 CCAGGCCACGAGTGAACAT 60.003 57.895 5.01 0.00 0.00 2.71
4854 5672 1.116536 TACCAGGCCACGAGTGAACA 61.117 55.000 5.01 0.00 0.00 3.18
4855 5673 0.034337 TTACCAGGCCACGAGTGAAC 59.966 55.000 5.01 0.00 0.00 3.18
4856 5674 0.981183 ATTACCAGGCCACGAGTGAA 59.019 50.000 5.01 0.00 0.00 3.18
4857 5675 0.249120 CATTACCAGGCCACGAGTGA 59.751 55.000 5.01 0.00 0.00 3.41
4858 5676 0.744414 CCATTACCAGGCCACGAGTG 60.744 60.000 5.01 0.00 0.00 3.51
4859 5677 1.602237 CCATTACCAGGCCACGAGT 59.398 57.895 5.01 0.00 0.00 4.18
4860 5678 1.153168 CCCATTACCAGGCCACGAG 60.153 63.158 5.01 0.00 0.00 4.18
4861 5679 2.994699 CCCATTACCAGGCCACGA 59.005 61.111 5.01 0.00 0.00 4.35
4862 5680 2.828549 GCCCATTACCAGGCCACG 60.829 66.667 5.01 0.00 43.76 4.94
4867 5685 4.894896 GGCCGGCCCATTACCAGG 62.895 72.222 36.64 0.00 0.00 4.45
4902 5720 2.320587 AAACAGCAGAGCTTCCGCG 61.321 57.895 0.00 0.00 42.32 6.46
4903 5721 1.208614 CAAACAGCAGAGCTTCCGC 59.791 57.895 0.00 0.00 36.40 5.54
4904 5722 1.196354 CTTCAAACAGCAGAGCTTCCG 59.804 52.381 0.00 0.00 36.40 4.30
4905 5723 1.068679 GCTTCAAACAGCAGAGCTTCC 60.069 52.381 0.00 0.00 39.83 3.46
4906 5724 1.878734 AGCTTCAAACAGCAGAGCTTC 59.121 47.619 0.00 0.00 42.84 3.86
4907 5725 1.978454 AGCTTCAAACAGCAGAGCTT 58.022 45.000 0.00 0.00 42.84 3.74
4908 5726 2.810852 GTTAGCTTCAAACAGCAGAGCT 59.189 45.455 0.00 1.58 42.84 4.09
4909 5727 2.412065 CGTTAGCTTCAAACAGCAGAGC 60.412 50.000 0.00 0.00 42.84 4.09
4910 5728 3.059884 TCGTTAGCTTCAAACAGCAGAG 58.940 45.455 0.00 0.00 42.84 3.35
4911 5729 3.059884 CTCGTTAGCTTCAAACAGCAGA 58.940 45.455 0.00 0.00 42.84 4.26
4912 5730 2.412065 GCTCGTTAGCTTCAAACAGCAG 60.412 50.000 13.07 2.68 45.85 4.24
4913 5731 1.531149 GCTCGTTAGCTTCAAACAGCA 59.469 47.619 13.07 0.00 45.85 4.41
4914 5732 2.233738 GCTCGTTAGCTTCAAACAGC 57.766 50.000 0.00 0.00 45.85 4.40
4924 5742 2.789893 CTCCTATTTGACGCTCGTTAGC 59.210 50.000 0.00 0.00 45.86 3.09
4925 5743 2.789893 GCTCCTATTTGACGCTCGTTAG 59.210 50.000 0.00 0.00 0.00 2.34
4926 5744 2.426024 AGCTCCTATTTGACGCTCGTTA 59.574 45.455 0.00 0.00 0.00 3.18
4927 5745 1.204941 AGCTCCTATTTGACGCTCGTT 59.795 47.619 0.00 0.00 0.00 3.85
4928 5746 0.818296 AGCTCCTATTTGACGCTCGT 59.182 50.000 0.00 0.00 0.00 4.18
4929 5747 1.482278 GAGCTCCTATTTGACGCTCG 58.518 55.000 0.87 0.00 37.89 5.03
4930 5748 1.539280 GGGAGCTCCTATTTGACGCTC 60.539 57.143 31.36 7.09 44.67 5.03
4931 5749 0.466124 GGGAGCTCCTATTTGACGCT 59.534 55.000 31.36 0.00 35.95 5.07
4932 5750 0.533085 GGGGAGCTCCTATTTGACGC 60.533 60.000 31.36 11.76 35.95 5.19
4933 5751 0.249489 CGGGGAGCTCCTATTTGACG 60.249 60.000 31.36 19.00 35.95 4.35
4934 5752 0.831307 ACGGGGAGCTCCTATTTGAC 59.169 55.000 31.36 13.25 35.95 3.18
4935 5753 1.209504 CAACGGGGAGCTCCTATTTGA 59.790 52.381 31.36 0.00 35.95 2.69
4936 5754 1.209504 TCAACGGGGAGCTCCTATTTG 59.790 52.381 31.36 26.79 35.95 2.32
4937 5755 1.580059 TCAACGGGGAGCTCCTATTT 58.420 50.000 31.36 18.21 35.95 1.40
4938 5756 1.580059 TTCAACGGGGAGCTCCTATT 58.420 50.000 31.36 19.59 35.95 1.73
4939 5757 1.209747 GTTTCAACGGGGAGCTCCTAT 59.790 52.381 31.36 14.83 35.95 2.57
4940 5758 0.611714 GTTTCAACGGGGAGCTCCTA 59.388 55.000 31.36 8.35 35.95 2.94
4941 5759 1.375326 GTTTCAACGGGGAGCTCCT 59.625 57.895 31.36 10.19 35.95 3.69
4942 5760 3.982829 GTTTCAACGGGGAGCTCC 58.017 61.111 25.59 25.59 0.00 4.70
4952 5770 3.190874 CTCTCCTCCTATGCGTTTCAAC 58.809 50.000 0.00 0.00 0.00 3.18
4953 5771 2.168521 CCTCTCCTCCTATGCGTTTCAA 59.831 50.000 0.00 0.00 0.00 2.69
4954 5772 1.757118 CCTCTCCTCCTATGCGTTTCA 59.243 52.381 0.00 0.00 0.00 2.69
4955 5773 1.069358 CCCTCTCCTCCTATGCGTTTC 59.931 57.143 0.00 0.00 0.00 2.78
4956 5774 1.123928 CCCTCTCCTCCTATGCGTTT 58.876 55.000 0.00 0.00 0.00 3.60
4957 5775 0.760945 CCCCTCTCCTCCTATGCGTT 60.761 60.000 0.00 0.00 0.00 4.84
4958 5776 1.152440 CCCCTCTCCTCCTATGCGT 60.152 63.158 0.00 0.00 0.00 5.24
4959 5777 1.910772 CCCCCTCTCCTCCTATGCG 60.911 68.421 0.00 0.00 0.00 4.73
4960 5778 2.220586 GCCCCCTCTCCTCCTATGC 61.221 68.421 0.00 0.00 0.00 3.14
4961 5779 1.910772 CGCCCCCTCTCCTCCTATG 60.911 68.421 0.00 0.00 0.00 2.23
4962 5780 1.665948 TTCGCCCCCTCTCCTCCTAT 61.666 60.000 0.00 0.00 0.00 2.57
4963 5781 1.665948 ATTCGCCCCCTCTCCTCCTA 61.666 60.000 0.00 0.00 0.00 2.94
4964 5782 3.028223 ATTCGCCCCCTCTCCTCCT 62.028 63.158 0.00 0.00 0.00 3.69
4965 5783 2.446802 ATTCGCCCCCTCTCCTCC 60.447 66.667 0.00 0.00 0.00 4.30
4966 5784 1.753368 CTCATTCGCCCCCTCTCCTC 61.753 65.000 0.00 0.00 0.00 3.71
4967 5785 1.764054 CTCATTCGCCCCCTCTCCT 60.764 63.158 0.00 0.00 0.00 3.69
4968 5786 1.753368 CTCTCATTCGCCCCCTCTCC 61.753 65.000 0.00 0.00 0.00 3.71
4969 5787 1.045911 ACTCTCATTCGCCCCCTCTC 61.046 60.000 0.00 0.00 0.00 3.20
4970 5788 0.618968 AACTCTCATTCGCCCCCTCT 60.619 55.000 0.00 0.00 0.00 3.69
4971 5789 1.069358 CTAACTCTCATTCGCCCCCTC 59.931 57.143 0.00 0.00 0.00 4.30
4972 5790 1.123928 CTAACTCTCATTCGCCCCCT 58.876 55.000 0.00 0.00 0.00 4.79
4973 5791 1.120530 TCTAACTCTCATTCGCCCCC 58.879 55.000 0.00 0.00 0.00 5.40
4974 5792 2.548920 CCATCTAACTCTCATTCGCCCC 60.549 54.545 0.00 0.00 0.00 5.80
4975 5793 2.548920 CCCATCTAACTCTCATTCGCCC 60.549 54.545 0.00 0.00 0.00 6.13
4976 5794 2.760374 CCCATCTAACTCTCATTCGCC 58.240 52.381 0.00 0.00 0.00 5.54
4977 5795 2.139118 GCCCATCTAACTCTCATTCGC 58.861 52.381 0.00 0.00 0.00 4.70
4978 5796 2.103094 TGGCCCATCTAACTCTCATTCG 59.897 50.000 0.00 0.00 0.00 3.34
4979 5797 3.389329 TCTGGCCCATCTAACTCTCATTC 59.611 47.826 0.00 0.00 0.00 2.67
4980 5798 3.135530 GTCTGGCCCATCTAACTCTCATT 59.864 47.826 0.00 0.00 0.00 2.57
4981 5799 2.703007 GTCTGGCCCATCTAACTCTCAT 59.297 50.000 0.00 0.00 0.00 2.90
4982 5800 2.111384 GTCTGGCCCATCTAACTCTCA 58.889 52.381 0.00 0.00 0.00 3.27
4983 5801 1.414550 GGTCTGGCCCATCTAACTCTC 59.585 57.143 0.00 0.00 0.00 3.20
4984 5802 1.273838 TGGTCTGGCCCATCTAACTCT 60.274 52.381 0.00 0.00 36.04 3.24
4985 5803 1.134371 GTGGTCTGGCCCATCTAACTC 60.134 57.143 0.00 0.00 36.74 3.01
4986 5804 0.912486 GTGGTCTGGCCCATCTAACT 59.088 55.000 0.00 0.00 36.74 2.24
4987 5805 0.618458 TGTGGTCTGGCCCATCTAAC 59.382 55.000 0.00 0.00 36.74 2.34
4988 5806 1.595311 ATGTGGTCTGGCCCATCTAA 58.405 50.000 0.00 0.00 36.74 2.10
4989 5807 1.595311 AATGTGGTCTGGCCCATCTA 58.405 50.000 0.00 0.00 36.74 1.98
4990 5808 0.706433 AAATGTGGTCTGGCCCATCT 59.294 50.000 0.00 0.00 36.74 2.90
4991 5809 1.106285 GAAATGTGGTCTGGCCCATC 58.894 55.000 0.00 0.00 36.74 3.51
4992 5810 0.324645 GGAAATGTGGTCTGGCCCAT 60.325 55.000 0.00 0.00 36.74 4.00
4993 5811 1.076549 GGAAATGTGGTCTGGCCCA 59.923 57.895 0.00 0.00 36.04 5.36
4994 5812 1.076549 TGGAAATGTGGTCTGGCCC 59.923 57.895 0.00 0.00 36.04 5.80
4995 5813 0.539438 TGTGGAAATGTGGTCTGGCC 60.539 55.000 0.00 0.00 37.90 5.36
4996 5814 0.598065 GTGTGGAAATGTGGTCTGGC 59.402 55.000 0.00 0.00 0.00 4.85
4997 5815 0.874390 CGTGTGGAAATGTGGTCTGG 59.126 55.000 0.00 0.00 0.00 3.86
4998 5816 1.593196 ACGTGTGGAAATGTGGTCTG 58.407 50.000 0.00 0.00 0.00 3.51
4999 5817 2.158813 AGAACGTGTGGAAATGTGGTCT 60.159 45.455 0.00 0.00 0.00 3.85
5000 5818 2.032030 CAGAACGTGTGGAAATGTGGTC 60.032 50.000 0.00 0.00 0.00 4.02
5001 5819 1.946768 CAGAACGTGTGGAAATGTGGT 59.053 47.619 0.00 0.00 0.00 4.16
5002 5820 1.266718 CCAGAACGTGTGGAAATGTGG 59.733 52.381 11.08 0.00 37.23 4.17
5003 5821 1.946768 ACCAGAACGTGTGGAAATGTG 59.053 47.619 21.17 0.00 38.57 3.21
5004 5822 2.341846 ACCAGAACGTGTGGAAATGT 57.658 45.000 21.17 0.00 38.57 2.71
5005 5823 3.371168 CAAACCAGAACGTGTGGAAATG 58.629 45.455 21.17 13.08 38.57 2.32
5006 5824 2.360801 CCAAACCAGAACGTGTGGAAAT 59.639 45.455 21.17 6.64 43.00 2.17
5007 5825 1.746220 CCAAACCAGAACGTGTGGAAA 59.254 47.619 21.17 0.00 43.00 3.13
5008 5826 1.384525 CCAAACCAGAACGTGTGGAA 58.615 50.000 21.17 0.00 43.00 3.53
5009 5827 0.464735 CCCAAACCAGAACGTGTGGA 60.465 55.000 21.17 0.00 43.00 4.02
5010 5828 0.464735 TCCCAAACCAGAACGTGTGG 60.465 55.000 14.31 14.31 40.41 4.17
5011 5829 1.064952 GTTCCCAAACCAGAACGTGTG 59.935 52.381 0.00 0.00 33.65 3.82
5012 5830 1.385528 GTTCCCAAACCAGAACGTGT 58.614 50.000 0.00 0.00 33.65 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.