AutoCloner

Multiple sequence alignment - TraesCS2D01G534200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G534200	chr2D	100.000	2273	0	0	1	2273	618131569	618133841	0.000000e+00	4198.0
1	TraesCS2D01G534200	chr2D	88.608	316	27	7	992	1304	618060716	618061025	2.130000e-100	375.0
2	TraesCS2D01G534200	chr2D	87.797	295	30	4	980	1268	617957677	617957971	7.780000e-90	340.0
3	TraesCS2D01G534200	chr2D	87.205	297	38	0	993	1289	618062011	618062307	2.800000e-89	339.0
4	TraesCS2D01G534200	chr2D	86.833	281	29	8	1001	1274	587114271	587113992	7.890000e-80	307.0
5	TraesCS2D01G534200	chr2D	78.674	347	49	17	1189	1528	588529930	588530258	8.230000e-50	207.0
6	TraesCS2D01G534200	chr2D	82.843	204	29	6	304	505	618101572	618101771	6.450000e-41	178.0
7	TraesCS2D01G534200	chr2D	81.098	164	28	2	714	874	617965043	617965206	6.590000e-26	128.0
8	TraesCS2D01G534200	chr2D	76.667	240	28	16	59	286	618101290	618101513	8.590000e-20	108.0
9	TraesCS2D01G534200	chr2A	85.289	1108	72	29	492	1545	748822462	748823532	0.000000e+00	1059.0
10	TraesCS2D01G534200	chr2A	95.333	300	13	1	1	299	748821837	748822136	2.040000e-130	475.0
11	TraesCS2D01G534200	chr2A	89.655	319	31	2	993	1310	748542321	748542638	2.720000e-109	405.0
12	TraesCS2D01G534200	chr2A	80.686	554	75	20	756	1289	748550372	748550913	3.520000e-108	401.0
13	TraesCS2D01G534200	chr2A	87.797	295	36	0	995	1289	748559998	748560292	1.670000e-91	346.0
14	TraesCS2D01G534200	chr2A	88.417	259	19	5	1601	1856	748823784	748824034	3.670000e-78	302.0
15	TraesCS2D01G534200	chr2A	89.474	190	18	2	294	481	748822161	748822350	2.920000e-59	239.0
16	TraesCS2D01G534200	chr2A	84.663	163	22	3	709	871	748697862	748698021	2.340000e-35	159.0
17	TraesCS2D01G534200	chr2A	81.538	195	30	6	313	505	748775301	748775491	3.020000e-34	156.0
18	TraesCS2D01G534200	chr2A	75.833	240	31	15	59	286	748774830	748775054	1.860000e-16	97.1
19	TraesCS2D01G534200	chr2B	86.202	674	55	15	590	1238	754609562	754610222	0.000000e+00	695.0
20	TraesCS2D01G534200	chr2B	91.553	438	17	3	1853	2273	194645322	194644888	9.050000e-164	586.0
21	TraesCS2D01G534200	chr2B	81.259	715	72	30	63	732	754634026	754634723	2.590000e-144	521.0
22	TraesCS2D01G534200	chr2B	88.498	313	34	2	993	1304	754010971	754011282	5.930000e-101	377.0
23	TraesCS2D01G534200	chr2B	88.851	296	28	3	995	1287	708826668	708826375	2.150000e-95	359.0
24	TraesCS2D01G534200	chr2B	85.672	335	27	8	1230	1544	754611373	754611706	1.300000e-87	333.0
25	TraesCS2D01G534200	chr2B	86.196	326	24	12	1539	1858	754611749	754612059	1.300000e-87	333.0
26	TraesCS2D01G534200	chr2B	96.296	54	2	0	1803	1856	754637204	754637257	3.110000e-14	89.8
27	TraesCS2D01G534200	chr2B	94.340	53	1	2	762	814	754634733	754634783	1.870000e-11	80.5
28	TraesCS2D01G534200	chr7B	92.009	438	16	3	1853	2273	693837889	693837454	4.180000e-167	597.0
29	TraesCS2D01G534200	chr6B	91.324	438	21	1	1853	2273	126215984	126216421	1.170000e-162	582.0
30	TraesCS2D01G534200	chr4D	91.324	438	19	2	1853	2273	497440451	497440886	4.210000e-162	580.0
31	TraesCS2D01G534200	chr4D	90.868	438	20	3	1853	2273	497416737	497417171	9.110000e-159	569.0
32	TraesCS2D01G534200	chr4D	90.868	438	20	3	1853	2273	497420159	497420593	9.110000e-159	569.0
33	TraesCS2D01G534200	chr4D	90.868	438	20	2	1853	2273	497427261	497427695	9.110000e-159	569.0
34	TraesCS2D01G534200	chr4D	90.411	438	22	12	1853	2273	497411205	497411639	1.970000e-155	558.0
35	TraesCS2D01G534200	chr4D	90.411	438	22	2	1853	2273	497423761	497424195	1.970000e-155	558.0
36	TraesCS2D01G534200	chr5B	90.868	438	19	3	1853	2273	271039542	271039975	3.280000e-158	568.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G534200	chr2D	618131569	618133841	2272	False	4198.000000	4198	100.000000	1	2273	1	chr2D.!!$F4	2272
1	TraesCS2D01G534200	chr2D	618060716	618062307	1591	False	357.000000	375	87.906500	992	1304	2	chr2D.!!$F5	312
2	TraesCS2D01G534200	chr2A	748821837	748824034	2197	False	518.750000	1059	89.628250	1	1856	4	chr2A.!!$F6	1855
3	TraesCS2D01G534200	chr2A	748550372	748550913	541	False	401.000000	401	80.686000	756	1289	1	chr2A.!!$F2	533
4	TraesCS2D01G534200	chr2B	754609562	754612059	2497	False	453.666667	695	86.023333	590	1858	3	chr2B.!!$F2	1268
5	TraesCS2D01G534200	chr2B	754634026	754637257	3231	False	230.433333	521	90.631667	63	1856	3	chr2B.!!$F3	1793
6	TraesCS2D01G534200	chr4D	497416737	497427695	10958	False	566.250000	569	90.753750	1853	2273	4	chr4D.!!$F3	420

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
751	903	0.179103	GCAAGCAAGCAAAGGTGTGT	60.179	50.0	0.0	0.0	0.0	3.72	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2159	12773	1.234821	TTGGTGTCCTCGATGTTTGC	58.765	50.0	0.0	0.0	0.0	3.68	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
46	47	8.462143	CTCATCTGAGGAAACATTTTTCATTG	57.538	34.615	6.67	0.00	42.72	2.82
180	188	7.362056	CCCTTAAAGTTGATGTAGTGAATGTGG	60.362	40.741	0.00	0.00	0.00	4.17
236	244	8.848474	TCGGACATCTTTTAAGAGAGAAAATT	57.152	30.769	1.86	0.00	38.66	1.82
324	362	8.604890	GGCACTCATAGTTTATAAGAACTTCAC	58.395	37.037	0.00	0.00	40.24	3.18
325	363	8.321716	GCACTCATAGTTTATAAGAACTTCACG	58.678	37.037	0.00	0.00	40.24	4.35
334	372	2.833631	AGAACTTCACGGTACCTTGG	57.166	50.000	17.66	5.90	0.00	3.61
347	385	1.750399	CCTTGGAACCGGCATGAGG	60.750	63.158	0.00	0.69	0.00	3.86
352	390	1.754234	GAACCGGCATGAGGGCATT	60.754	57.895	0.00	0.00	43.60	3.56
533	676	4.864247	GTCTTGCACACAATTTTGAACTGT	59.136	37.500	0.00	0.00	34.61	3.55
537	680	4.624882	TGCACACAATTTTGAACTGTCAAC	59.375	37.500	0.00	0.00	43.52	3.18
542	685	6.310956	ACACAATTTTGAACTGTCAACACATG	59.689	34.615	0.00	0.00	43.52	3.21
551	694	9.676195	TTGAACTGTCAACACATGTTATATTTG	57.324	29.630	0.00	0.00	38.88	2.32
553	696	9.329913	GAACTGTCAACACATGTTATATTTGAC	57.670	33.333	18.37	18.37	42.00	3.18
565	708	6.539173	TGTTATATTTGACAACAGAGGGTGT	58.461	36.000	0.00	0.00	43.24	4.16
566	709	7.681679	TGTTATATTTGACAACAGAGGGTGTA	58.318	34.615	0.00	0.00	39.03	2.90
567	710	8.325787	TGTTATATTTGACAACAGAGGGTGTAT	58.674	33.333	0.00	0.00	39.03	2.29
591	734	8.699283	ATTACTAGTTTTACTCGGTAAAGCTG	57.301	34.615	23.25	18.06	44.70	4.24
609	752	1.372623	GGACACCTTCGTCGTCCAC	60.373	63.158	2.98	0.00	46.98	4.02
614	757	1.734477	CCTTCGTCGTCCACTGCTG	60.734	63.158	0.00	0.00	0.00	4.41
637	789	1.213013	CTCAACTCTGTCCGGTCCG	59.787	63.158	3.60	3.60	0.00	4.79
675	827	1.264826	GCTCGGCGGTAAGAAAACAAA	59.735	47.619	7.21	0.00	0.00	2.83
676	828	2.664698	GCTCGGCGGTAAGAAAACAAAG	60.665	50.000	7.21	0.00	0.00	2.77
677	829	2.803956	CTCGGCGGTAAGAAAACAAAGA	59.196	45.455	7.21	0.00	0.00	2.52
678	830	2.545106	TCGGCGGTAAGAAAACAAAGAC	59.455	45.455	7.21	0.00	0.00	3.01
679	831	2.660900	CGGCGGTAAGAAAACAAAGACG	60.661	50.000	0.00	0.00	0.00	4.18
681	833	2.912366	CGGTAAGAAAACAAAGACGGC	58.088	47.619	0.00	0.00	0.00	5.68
736	888	2.579787	CGAGAGGTACGGCGCAAG	60.580	66.667	10.83	4.90	43.44	4.01
748	900	3.926497	CGCAAGCAAGCAAAGGTG	58.074	55.556	1.32	0.00	0.00	4.00
749	901	1.066257	CGCAAGCAAGCAAAGGTGT	59.934	52.632	1.32	0.00	0.00	4.16
750	902	1.210545	CGCAAGCAAGCAAAGGTGTG	61.211	55.000	1.32	0.00	0.00	3.82
751	903	0.179103	GCAAGCAAGCAAAGGTGTGT	60.179	50.000	0.00	0.00	0.00	3.72
752	904	1.843992	CAAGCAAGCAAAGGTGTGTC	58.156	50.000	0.00	0.00	0.00	3.67
753	905	0.746659	AAGCAAGCAAAGGTGTGTCC	59.253	50.000	0.00	0.00	0.00	4.02
754	906	0.395586	AGCAAGCAAAGGTGTGTCCA	60.396	50.000	0.00	0.00	39.02	4.02
874	1302	3.117794	CAACACAAACAGGCATCAGTTG	58.882	45.455	0.00	0.00	0.00	3.16
956	2762	5.994887	AGTTCAGTAGCTCTATAGACACG	57.005	43.478	0.00	0.00	0.00	4.49
1181	3285	2.360475	GAAGCAGCTTCCGGCCTT	60.360	61.111	22.88	0.00	43.05	4.35
1316	4582	2.129607	GTGTTCGTCGGAGCAAAGTAA	58.870	47.619	0.00	0.00	35.04	2.24
1347	4633	1.001393	GATTGCCCTTTCCCCACGA	60.001	57.895	0.00	0.00	0.00	4.35
1361	4647	3.971305	TCCCCACGATTGTAAGATACCAT	59.029	43.478	0.00	0.00	0.00	3.55
1362	4648	5.149239	TCCCCACGATTGTAAGATACCATA	58.851	41.667	0.00	0.00	0.00	2.74
1363	4649	5.603395	TCCCCACGATTGTAAGATACCATAA	59.397	40.000	0.00	0.00	0.00	1.90
1368	4654	9.219603	CCACGATTGTAAGATACCATAATGATT	57.780	33.333	0.00	0.00	0.00	2.57
1406	4692	5.904362	ATTTTGGCCTCAGTTTATGACTC	57.096	39.130	3.32	0.00	36.10	3.36
1409	4695	4.737855	TGGCCTCAGTTTATGACTCTAC	57.262	45.455	3.32	0.00	36.10	2.59
1509	4805	1.242076	ATGTTGAGAGTTGCACAGGC	58.758	50.000	0.00	0.00	41.68	4.85
1580	4928	4.507512	GGGAGACAGAAAGGGAGTTGAATT	60.508	45.833	0.00	0.00	0.00	2.17
1612	5108	2.677875	GGCTGCCCTCCAACCAAG	60.678	66.667	7.66	0.00	29.78	3.61
1667	5224	2.676839	CTGACCTGCTAGATGTGCTTTG	59.323	50.000	0.00	0.00	0.00	2.77
1790	5363	3.365666	GCATGACCAGAGTGATGTTGTTG	60.366	47.826	0.00	0.00	39.54	3.33
1856	5429	2.489722	CAGAGTGATGACCGAGTGAGAA	59.510	50.000	0.00	0.00	0.00	2.87
1857	5430	2.490115	AGAGTGATGACCGAGTGAGAAC	59.510	50.000	0.00	0.00	0.00	3.01
1858	5431	2.490115	GAGTGATGACCGAGTGAGAACT	59.510	50.000	0.00	0.00	0.00	3.01
1859	5432	3.687125	AGTGATGACCGAGTGAGAACTA	58.313	45.455	0.00	0.00	0.00	2.24
1860	5433	3.440872	AGTGATGACCGAGTGAGAACTAC	59.559	47.826	0.00	0.00	0.00	2.73
1886	5459	8.028938	CCAAATTCGTTGATCAGAAAAAGGTAT	58.971	33.333	0.00	0.00	39.87	2.73
1892	5465	9.058174	TCGTTGATCAGAAAAAGGTATTACAAA	57.942	29.630	0.00	0.00	0.00	2.83
2011	12625	2.781681	ACCAAGCAACGCCTAGTTAT	57.218	45.000	0.00	0.00	42.02	1.89
2014	12628	3.197116	ACCAAGCAACGCCTAGTTATACT	59.803	43.478	0.00	0.00	42.02	2.12
2074	12688	0.176910	CCAAAACCCCACAACACACC	59.823	55.000	0.00	0.00	0.00	4.16
2159	12773	0.320247	GGCTGCCACGAGGATATCTG	60.320	60.000	15.17	0.00	36.89	2.90
2164	12778	1.599542	GCCACGAGGATATCTGCAAAC	59.400	52.381	1.86	0.00	36.89	2.93
2177	12791	0.107643	TGCAAACATCGAGGACACCA	59.892	50.000	3.06	0.00	0.00	4.17
2178	12792	1.234821	GCAAACATCGAGGACACCAA	58.765	50.000	3.06	0.00	0.00	3.67
2233	12864	1.067821	AGGCAAGTAGACATAGCTCGC	59.932	52.381	0.00	0.00	0.00	5.03
2265	16396	3.138884	TGCATGTGAAGGTTGCTCTTA	57.861	42.857	0.00	0.00	0.00	2.10
2266	16397	3.485394	TGCATGTGAAGGTTGCTCTTAA	58.515	40.909	0.00	0.00	0.00	1.85

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
35	36	7.650504	ACTGTGAGATGACAACAATGAAAAATG	59.349	33.333	0.00	0.00	0.00	2.32
46	47	7.639039	TGAACATTTTACTGTGAGATGACAAC	58.361	34.615	9.58	0.73	0.00	3.32
180	188	3.829886	TCATTTGTTCAATCCTCGTGC	57.170	42.857	0.00	0.00	0.00	5.34
281	289	5.128663	TGAGTGCCTATTTGTGCTAGTGATA	59.871	40.000	0.00	0.00	0.00	2.15
325	363	1.029947	CATGCCGGTTCCAAGGTACC	61.030	60.000	2.73	2.73	33.06	3.34
328	366	1.002134	CTCATGCCGGTTCCAAGGT	60.002	57.895	1.90	0.00	0.00	3.50
334	372	1.754234	AATGCCCTCATGCCGGTTC	60.754	57.895	1.90	0.00	32.23	3.62
340	378	0.750546	TCTCTGCAATGCCCTCATGC	60.751	55.000	1.53	0.00	32.23	4.06
347	385	4.792057	GCATGTCTAAATCTCTGCAATGCC	60.792	45.833	1.53	0.00	0.00	4.40
352	390	3.941573	TGTGCATGTCTAAATCTCTGCA	58.058	40.909	0.00	0.00	37.29	4.41
497	538	5.121611	TGTGTGCAAGACCGTAATTTCTATG	59.878	40.000	0.00	0.00	0.00	2.23
505	648	4.096532	TCAAAATTGTGTGCAAGACCGTAA	59.903	37.500	0.00	0.00	38.10	3.18
533	676	9.061435	TCTGTTGTCAAATATAACATGTGTTGA	57.939	29.630	0.00	2.27	38.37	3.18
537	680	7.121168	ACCCTCTGTTGTCAAATATAACATGTG	59.879	37.037	0.00	0.00	38.37	3.21
542	685	8.732746	ATACACCCTCTGTTGTCAAATATAAC	57.267	34.615	0.00	0.00	33.91	1.89
551	694	6.527057	ACTAGTAATACACCCTCTGTTGTC	57.473	41.667	0.00	0.00	33.91	3.18
553	696	9.148104	GTAAAACTAGTAATACACCCTCTGTTG	57.852	37.037	0.00	0.00	33.91	3.33
565	708	9.793252	CAGCTTTACCGAGTAAAACTAGTAATA	57.207	33.333	0.00	0.00	37.51	0.98
566	709	7.763071	CCAGCTTTACCGAGTAAAACTAGTAAT	59.237	37.037	0.00	0.00	37.51	1.89
567	710	7.039784	TCCAGCTTTACCGAGTAAAACTAGTAA	60.040	37.037	0.00	0.00	37.51	2.24
609	752	3.430098	GGACAGAGTTGAGATACCAGCAG	60.430	52.174	0.00	0.00	0.00	4.24
614	757	2.099427	GACCGGACAGAGTTGAGATACC	59.901	54.545	9.46	0.00	0.00	2.73
637	789	1.949257	CGGCTGGTTTTGTCCACTC	59.051	57.895	0.00	0.00	33.55	3.51
662	814	3.624900	GTGCCGTCTTTGTTTTCTTACC	58.375	45.455	0.00	0.00	0.00	2.85
664	816	3.196463	TCGTGCCGTCTTTGTTTTCTTA	58.804	40.909	0.00	0.00	0.00	2.10
675	827	3.450115	GCCTACCTCGTGCCGTCT	61.450	66.667	0.00	0.00	0.00	4.18
676	828	3.701604	CTGCCTACCTCGTGCCGTC	62.702	68.421	0.00	0.00	0.00	4.79
677	829	3.760035	CTGCCTACCTCGTGCCGT	61.760	66.667	0.00	0.00	0.00	5.68
679	831	4.840005	GGCTGCCTACCTCGTGCC	62.840	72.222	12.43	0.00	0.00	5.01
681	833	2.125512	GTGGCTGCCTACCTCGTG	60.126	66.667	21.03	0.00	0.00	4.35
727	879	3.829272	CTTTGCTTGCTTGCGCCGT	62.829	57.895	4.18	0.00	35.36	5.68
736	888	0.459489	TTGGACACACCTTTGCTTGC	59.541	50.000	0.00	0.00	39.86	4.01
737	889	2.957491	TTTGGACACACCTTTGCTTG	57.043	45.000	0.00	0.00	39.86	4.01
738	890	2.418609	GCTTTTGGACACACCTTTGCTT	60.419	45.455	0.00	0.00	39.86	3.91
739	891	1.136891	GCTTTTGGACACACCTTTGCT	59.863	47.619	0.00	0.00	39.86	3.91
740	892	1.134848	TGCTTTTGGACACACCTTTGC	60.135	47.619	0.00	0.00	39.86	3.68
741	893	2.539476	GTGCTTTTGGACACACCTTTG	58.461	47.619	0.00	0.00	40.70	2.77
742	894	2.959507	GTGCTTTTGGACACACCTTT	57.040	45.000	0.00	0.00	40.70	3.11
745	897	2.070654	CGGGTGCTTTTGGACACACC	62.071	60.000	2.39	2.39	45.01	4.16
746	898	1.358759	CGGGTGCTTTTGGACACAC	59.641	57.895	0.00	0.00	45.01	3.82
747	899	1.826054	CCGGGTGCTTTTGGACACA	60.826	57.895	0.00	0.00	45.01	3.72
748	900	0.535553	TACCGGGTGCTTTTGGACAC	60.536	55.000	10.66	0.00	42.95	3.67
749	901	0.402504	ATACCGGGTGCTTTTGGACA	59.597	50.000	10.66	0.00	42.95	4.02
750	902	1.092348	GATACCGGGTGCTTTTGGAC	58.908	55.000	10.66	0.00	40.25	4.02
751	903	0.034863	GGATACCGGGTGCTTTTGGA	60.035	55.000	10.66	0.00	0.00	3.53
752	904	0.034477	AGGATACCGGGTGCTTTTGG	60.034	55.000	10.66	0.00	37.17	3.28
753	905	1.094785	CAGGATACCGGGTGCTTTTG	58.905	55.000	10.66	0.00	37.17	2.44
754	906	0.034477	CCAGGATACCGGGTGCTTTT	60.034	55.000	10.66	0.00	34.16	2.27
874	1302	1.512926	TTTTCTTGCTCGACTGCCTC	58.487	50.000	0.00	0.00	0.00	4.70
883	1332	3.427863	GCTGATGCTTGTTTTTCTTGCTC	59.572	43.478	0.00	0.00	36.03	4.26
956	2762	7.725251	AGAGAAGATACTGAATTGTGATCTCC	58.275	38.462	0.00	0.00	32.11	3.71
1368	4654	8.025270	AGGCCAAAATTTTCATCATCATCATA	57.975	30.769	5.01	0.00	0.00	2.15
1388	4674	4.093743	TGTAGAGTCATAAACTGAGGCCA	58.906	43.478	5.01	0.00	38.74	5.36
1406	4692	1.141053	GGGCAAGGTAGGGTGATGTAG	59.859	57.143	0.00	0.00	0.00	2.74
1409	4695	0.625849	AAGGGCAAGGTAGGGTGATG	59.374	55.000	0.00	0.00	0.00	3.07
1509	4805	1.208614	GCTTTGCGGAGTTGCTCTG	59.791	57.895	0.87	0.87	39.66	3.35
1580	4928	2.185867	GCCGGGTGTATCGCTGAA	59.814	61.111	2.18	0.00	0.00	3.02
1821	5394	7.324178	GTCATCACTCTGATTACCAGTTAACT	58.676	38.462	1.12	1.12	43.38	2.24
1825	5398	4.382040	CGGTCATCACTCTGATTACCAGTT	60.382	45.833	13.51	0.00	46.42	3.16
1856	5429	7.504924	TTTTCTGATCAACGAATTTGGTAGT	57.495	32.000	0.00	0.00	35.69	2.73
1857	5430	7.538678	CCTTTTTCTGATCAACGAATTTGGTAG	59.461	37.037	0.00	0.00	35.69	3.18
1858	5431	7.013846	ACCTTTTTCTGATCAACGAATTTGGTA	59.986	33.333	0.00	0.00	35.69	3.25
1859	5432	6.183360	ACCTTTTTCTGATCAACGAATTTGGT	60.183	34.615	0.00	4.07	35.69	3.67
1860	5433	6.215845	ACCTTTTTCTGATCAACGAATTTGG	58.784	36.000	0.00	3.52	35.69	3.28
1886	5459	5.845391	CTCCTTTGAGGGTGTTTTTGTAA	57.155	39.130	0.00	0.00	35.59	2.41
1944	8956	5.535030	ACCGAGCAGTCCTATTTTTCTTTTT	59.465	36.000	0.00	0.00	0.00	1.94
1945	8957	5.070685	ACCGAGCAGTCCTATTTTTCTTTT	58.929	37.500	0.00	0.00	0.00	2.27
2011	12625	6.014925	TGTGTTGTGATGCTTTAGACCTAGTA	60.015	38.462	0.00	0.00	0.00	1.82
2014	12628	5.222079	TGTGTTGTGATGCTTTAGACCTA	57.778	39.130	0.00	0.00	0.00	3.08
2152	12766	4.210120	GTGTCCTCGATGTTTGCAGATATC	59.790	45.833	4.13	4.13	0.00	1.63
2159	12773	1.234821	TTGGTGTCCTCGATGTTTGC	58.765	50.000	0.00	0.00	0.00	3.68
2164	12778	1.550524	TCCTCTTTGGTGTCCTCGATG	59.449	52.381	0.00	0.00	37.07	3.84
2177	12791	4.307432	CGGCATACATATCGTTCCTCTTT	58.693	43.478	0.00	0.00	0.00	2.52
2178	12792	3.861131	GCGGCATACATATCGTTCCTCTT	60.861	47.826	0.00	0.00	0.00	2.85

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.