Multiple sequence alignment - TraesCS2D01G534100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G534100 chr2D 100.000 2288 0 0 1 2288 618128328 618130615 0.000000e+00 4226.0
1 TraesCS2D01G534100 chr2D 78.887 791 96 39 832 1570 618081673 618082444 9.570000e-129 470.0
2 TraesCS2D01G534100 chr2D 83.733 375 29 16 114 468 588530452 588530814 2.190000e-85 326.0
3 TraesCS2D01G534100 chr2D 78.483 567 55 27 746 1306 618135438 618135943 2.210000e-80 309.0
4 TraesCS2D01G534100 chr2D 80.745 161 22 6 989 1143 588531284 588531441 1.440000e-22 117.0
5 TraesCS2D01G534100 chr2D 85.149 101 9 4 1 100 618061293 618061388 5.200000e-17 99.0
6 TraesCS2D01G534100 chr2B 89.852 946 57 8 667 1595 754550858 754551781 0.000000e+00 1179.0
7 TraesCS2D01G534100 chr2B 89.618 655 33 7 1643 2288 754551946 754552574 0.000000e+00 800.0
8 TraesCS2D01G534100 chr2B 80.225 622 70 31 832 1419 754151905 754152507 3.520000e-113 418.0
9 TraesCS2D01G534100 chr2B 81.419 296 21 13 1024 1290 754637938 754638228 6.400000e-51 211.0
10 TraesCS2D01G534100 chr2B 84.158 101 7 6 1 100 754014363 754014455 3.130000e-14 89.8
11 TraesCS2D01G534100 chr2A 78.640 838 103 37 617 1419 748819450 748820246 9.500000e-134 486.0
12 TraesCS2D01G534100 chr2A 80.280 644 70 22 682 1313 748892810 748893408 1.260000e-117 433.0
13 TraesCS2D01G534100 chr2A 86.598 388 36 9 1 385 748818821 748819195 4.550000e-112 414.0
14 TraesCS2D01G534100 chr2A 77.246 835 80 46 615 1416 748700486 748701243 2.760000e-104 388.0
15 TraesCS2D01G534100 chr2A 87.129 101 7 4 1 100 748558894 748558989 2.400000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G534100 chr2D 618128328 618130615 2287 False 4226.0 4226 100.000 1 2288 1 chr2D.!!$F3 2287
1 TraesCS2D01G534100 chr2D 618081673 618082444 771 False 470.0 470 78.887 832 1570 1 chr2D.!!$F2 738
2 TraesCS2D01G534100 chr2D 618135438 618135943 505 False 309.0 309 78.483 746 1306 1 chr2D.!!$F4 560
3 TraesCS2D01G534100 chr2D 588530452 588531441 989 False 221.5 326 82.239 114 1143 2 chr2D.!!$F5 1029
4 TraesCS2D01G534100 chr2B 754550858 754552574 1716 False 989.5 1179 89.735 667 2288 2 chr2B.!!$F4 1621
5 TraesCS2D01G534100 chr2B 754151905 754152507 602 False 418.0 418 80.225 832 1419 1 chr2B.!!$F2 587
6 TraesCS2D01G534100 chr2A 748818821 748820246 1425 False 450.0 486 82.619 1 1419 2 chr2A.!!$F4 1418
7 TraesCS2D01G534100 chr2A 748892810 748893408 598 False 433.0 433 80.280 682 1313 1 chr2A.!!$F3 631
8 TraesCS2D01G534100 chr2A 748700486 748701243 757 False 388.0 388 77.246 615 1416 1 chr2A.!!$F2 801

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
174 176 0.177604 GTCTGACCTGCTGGATCTGG 59.822 60.0 17.64 7.69 37.04 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1482 1807 0.035534 TTGCCGCTAAGCATTGAGGA 60.036 50.0 0.0 0.0 43.64 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.045536 GCTGCCCTCCAAGGTCTG 60.046 66.667 0.00 0.00 31.93 3.51
52 53 5.592282 GGTCTGACTCACATCTTCTCTGATA 59.408 44.000 7.85 0.00 0.00 2.15
54 55 7.363355 GGTCTGACTCACATCTTCTCTGATAAA 60.363 40.741 7.85 0.00 0.00 1.40
56 57 8.756927 TCTGACTCACATCTTCTCTGATAAATT 58.243 33.333 0.00 0.00 0.00 1.82
70 71 5.046591 TCTGATAAATTCGAACACCTCCAGT 60.047 40.000 0.00 0.00 0.00 4.00
71 72 5.175859 TGATAAATTCGAACACCTCCAGTC 58.824 41.667 0.00 0.00 0.00 3.51
73 74 0.613777 ATTCGAACACCTCCAGTCCC 59.386 55.000 0.00 0.00 0.00 4.46
74 75 0.471211 TTCGAACACCTCCAGTCCCT 60.471 55.000 0.00 0.00 0.00 4.20
81 82 1.197430 ACCTCCAGTCCCTCTGCAAG 61.197 60.000 0.00 0.00 42.38 4.01
82 83 1.078567 CTCCAGTCCCTCTGCAAGC 60.079 63.158 0.00 0.00 42.38 4.01
85 86 2.925170 AGTCCCTCTGCAAGCGGT 60.925 61.111 0.18 0.00 37.01 5.68
87 88 3.241530 TCCCTCTGCAAGCGGTGT 61.242 61.111 0.18 0.00 37.01 4.16
104 105 0.458669 TGTCCGTTAGAGATTCCGGC 59.541 55.000 0.00 0.00 40.23 6.13
109 110 0.651031 GTTAGAGATTCCGGCGTTGC 59.349 55.000 6.01 0.00 0.00 4.17
120 121 2.975799 GCGTTGCGTTCCTCCCAA 60.976 61.111 0.00 0.00 0.00 4.12
143 145 9.933723 CCAACCAAATTCTTCTTTTCTGATTAT 57.066 29.630 0.00 0.00 0.00 1.28
174 176 0.177604 GTCTGACCTGCTGGATCTGG 59.822 60.000 17.64 7.69 37.04 3.86
177 181 0.835276 TGACCTGCTGGATCTGGATG 59.165 55.000 17.64 0.00 37.04 3.51
180 184 0.818445 CCTGCTGGATCTGGATGTGC 60.818 60.000 2.92 0.00 34.57 4.57
181 185 0.180642 CTGCTGGATCTGGATGTGCT 59.819 55.000 0.00 0.00 0.00 4.40
182 186 0.622136 TGCTGGATCTGGATGTGCTT 59.378 50.000 0.00 0.00 0.00 3.91
183 187 1.005097 TGCTGGATCTGGATGTGCTTT 59.995 47.619 0.00 0.00 0.00 3.51
184 188 1.674962 GCTGGATCTGGATGTGCTTTC 59.325 52.381 0.00 0.00 0.00 2.62
185 189 2.683152 GCTGGATCTGGATGTGCTTTCT 60.683 50.000 0.00 0.00 0.00 2.52
186 190 2.943690 CTGGATCTGGATGTGCTTTCTG 59.056 50.000 0.00 0.00 0.00 3.02
189 193 3.603532 GATCTGGATGTGCTTTCTGTGA 58.396 45.455 0.00 0.00 0.00 3.58
212 216 3.058160 GTCGGCTGGCTGTGCATT 61.058 61.111 0.00 0.00 0.00 3.56
250 254 3.442273 TGGCGAACCTGTTATGAATTTCC 59.558 43.478 0.00 0.00 36.63 3.13
335 345 5.628193 AGTGATGTCGTTTACTAAGACAACG 59.372 40.000 1.57 0.00 46.22 4.10
338 348 7.113404 GTGATGTCGTTTACTAAGACAACGTTA 59.887 37.037 0.00 0.00 46.22 3.18
393 415 3.171987 GTGATGACACAGCGCAGG 58.828 61.111 11.47 3.29 45.32 4.85
449 471 1.001293 TGCTGACACGAAGAAGCAGAT 59.999 47.619 0.00 0.00 40.59 2.90
470 492 1.766059 TCATGGCCGGCTGGTATCT 60.766 57.895 28.56 0.00 37.67 1.98
472 494 0.466189 CATGGCCGGCTGGTATCTTT 60.466 55.000 28.56 0.00 37.67 2.52
473 495 1.136828 ATGGCCGGCTGGTATCTTTA 58.863 50.000 28.56 0.34 37.67 1.85
474 496 1.136828 TGGCCGGCTGGTATCTTTAT 58.863 50.000 28.56 0.00 37.67 1.40
475 497 1.071699 TGGCCGGCTGGTATCTTTATC 59.928 52.381 28.56 4.81 37.67 1.75
476 498 1.348036 GGCCGGCTGGTATCTTTATCT 59.652 52.381 28.56 0.00 37.67 1.98
477 499 2.417719 GCCGGCTGGTATCTTTATCTG 58.582 52.381 22.15 0.00 37.67 2.90
478 500 2.224305 GCCGGCTGGTATCTTTATCTGT 60.224 50.000 22.15 0.00 37.67 3.41
483 660 4.381411 GCTGGTATCTTTATCTGTGGGAC 58.619 47.826 0.00 0.00 0.00 4.46
515 692 5.426504 CCTGAGCTGAATGAACAACTCTAT 58.573 41.667 0.00 0.00 35.05 1.98
516 693 6.577103 CCTGAGCTGAATGAACAACTCTATA 58.423 40.000 0.00 0.00 35.05 1.31
523 700 7.320443 TGAATGAACAACTCTATATTGGCAC 57.680 36.000 0.00 0.00 0.00 5.01
524 701 5.991328 ATGAACAACTCTATATTGGCACG 57.009 39.130 0.00 0.00 0.00 5.34
554 731 5.900425 TGATGCAGAGAGTGTCTTTATCTC 58.100 41.667 10.23 0.00 39.83 2.75
563 740 3.005897 AGTGTCTTTATCTCGCTGTGTGT 59.994 43.478 0.00 0.00 0.00 3.72
582 759 7.339482 TGTGTGTTACCACCAAGCATATTATA 58.661 34.615 0.00 0.00 41.09 0.98
583 760 7.996066 TGTGTGTTACCACCAAGCATATTATAT 59.004 33.333 0.00 0.00 41.09 0.86
584 761 8.846211 GTGTGTTACCACCAAGCATATTATATT 58.154 33.333 0.00 0.00 41.09 1.28
589 766 9.667107 TTACCACCAAGCATATTATATTAGAGC 57.333 33.333 0.00 0.00 0.00 4.09
590 767 7.689299 ACCACCAAGCATATTATATTAGAGCA 58.311 34.615 0.00 0.00 0.00 4.26
591 768 8.163408 ACCACCAAGCATATTATATTAGAGCAA 58.837 33.333 0.00 0.00 0.00 3.91
592 769 8.671921 CCACCAAGCATATTATATTAGAGCAAG 58.328 37.037 0.00 0.00 0.00 4.01
593 770 9.224267 CACCAAGCATATTATATTAGAGCAAGT 57.776 33.333 0.00 0.00 0.00 3.16
594 771 9.224267 ACCAAGCATATTATATTAGAGCAAGTG 57.776 33.333 0.00 0.00 0.00 3.16
595 772 8.180267 CCAAGCATATTATATTAGAGCAAGTGC 58.820 37.037 0.00 0.00 42.49 4.40
607 784 2.086054 GCAAGTGCTACACTGCTACT 57.914 50.000 0.15 0.00 44.62 2.57
608 785 3.232213 GCAAGTGCTACACTGCTACTA 57.768 47.619 0.15 0.00 44.62 1.82
609 786 2.924290 GCAAGTGCTACACTGCTACTAC 59.076 50.000 0.15 0.00 44.62 2.73
610 787 3.367498 GCAAGTGCTACACTGCTACTACT 60.367 47.826 0.15 0.00 44.62 2.57
611 788 4.416620 CAAGTGCTACACTGCTACTACTC 58.583 47.826 0.15 0.00 44.62 2.59
612 789 3.018149 AGTGCTACACTGCTACTACTCC 58.982 50.000 0.00 0.00 43.63 3.85
613 790 2.099427 GTGCTACACTGCTACTACTCCC 59.901 54.545 0.00 0.00 0.00 4.30
657 835 2.103771 ACTGACTTGAGCACAGTGACAT 59.896 45.455 4.15 0.00 42.18 3.06
658 836 3.136763 CTGACTTGAGCACAGTGACATT 58.863 45.455 4.15 0.00 0.00 2.71
668 846 2.874086 CACAGTGACATTCTGACAGCAA 59.126 45.455 0.00 0.00 36.81 3.91
690 877 4.326766 CAACTTGTGGCACGCCGG 62.327 66.667 13.77 0.00 38.60 6.13
724 911 3.865929 CTGGCGTCCGACAGCAACT 62.866 63.158 9.94 0.00 45.01 3.16
854 1075 1.846007 GGTTACCCATGCCAACATCA 58.154 50.000 0.00 0.00 32.87 3.07
863 1088 0.328926 TGCCAACATCAGCATCTCCA 59.671 50.000 0.00 0.00 33.08 3.86
864 1089 0.737219 GCCAACATCAGCATCTCCAC 59.263 55.000 0.00 0.00 0.00 4.02
865 1090 1.681166 GCCAACATCAGCATCTCCACT 60.681 52.381 0.00 0.00 0.00 4.00
866 1091 2.286872 CCAACATCAGCATCTCCACTC 58.713 52.381 0.00 0.00 0.00 3.51
896 1129 2.046023 CATGAGGAGCACCGCCAA 60.046 61.111 0.81 0.00 41.83 4.52
899 1132 0.323725 ATGAGGAGCACCGCCAATTT 60.324 50.000 0.81 0.00 41.83 1.82
923 1159 2.032981 CAGCTGAAAACCGCCACTT 58.967 52.632 8.42 0.00 0.00 3.16
924 1160 0.318107 CAGCTGAAAACCGCCACTTG 60.318 55.000 8.42 0.00 0.00 3.16
981 1235 5.163447 ACCGTGATACCTACGTAGTACTACA 60.163 44.000 28.03 12.29 45.11 2.74
989 1243 4.391830 CCTACGTAGTACTACAACCGAACA 59.608 45.833 28.03 8.33 45.11 3.18
991 1245 5.376854 ACGTAGTACTACAACCGAACAAT 57.623 39.130 28.03 0.46 41.94 2.71
995 1249 7.326063 ACGTAGTACTACAACCGAACAATTTAC 59.674 37.037 28.03 2.61 41.94 2.01
998 1252 5.834239 ACTACAACCGAACAATTTACTCG 57.166 39.130 0.00 0.00 0.00 4.18
1008 1262 2.093658 ACAATTTACTCGGATGGCGAGT 60.094 45.455 3.01 3.01 46.68 4.18
1011 1265 0.968901 TTACTCGGATGGCGAGTGGT 60.969 55.000 6.39 0.00 45.01 4.16
1116 1378 2.594303 CTGTGCCGCTGGAACCAA 60.594 61.111 3.63 0.00 27.67 3.67
1124 1386 4.025401 CTGGAACCAACACGCGCC 62.025 66.667 5.73 0.00 0.00 6.53
1245 1528 0.252650 AGGAGCAGGAAGAGGAGCTT 60.253 55.000 0.00 0.00 37.48 3.74
1314 1600 7.948357 TGTAGCGGATTAGTCATTACTTACAT 58.052 34.615 0.00 0.00 37.15 2.29
1319 1605 9.557338 GCGGATTAGTCATTACTTACATACTAG 57.443 37.037 0.00 0.00 37.15 2.57
1341 1627 6.279813 AGAGTCCTCTAGATCTTCTTGGAT 57.720 41.667 0.00 0.00 38.35 3.41
1356 1660 1.150081 GGATGGCTAGCTGCACCAT 59.850 57.895 15.72 18.09 46.82 3.55
1360 1664 0.680921 TGGCTAGCTGCACCATTTCC 60.681 55.000 15.72 0.00 45.15 3.13
1397 1712 1.064208 GAGCTCAGCATGCACATTCAG 59.936 52.381 21.98 6.81 34.76 3.02
1476 1801 0.179073 AGATTGACATCGCTTCCGGG 60.179 55.000 0.00 0.00 34.17 5.73
1595 1920 6.422776 TTTGTTGTTGTTGTTGTTGTTGTT 57.577 29.167 0.00 0.00 0.00 2.83
1596 1921 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
1597 1922 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
1599 1924 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
1600 1925 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
1601 1926 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
1602 1927 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
1603 1928 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
1605 1930 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
1606 1931 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
1608 1933 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
1610 1935 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
1612 1937 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
1613 1938 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
1614 1939 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
1615 1940 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
1616 1941 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
1618 1943 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
1619 1944 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
1621 1946 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
1622 1947 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
1623 1948 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
1624 1949 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
1625 1950 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
1627 1952 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
1628 1953 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
1629 1954 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
1631 1956 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
1632 1957 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
1633 1958 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
1634 1959 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
1635 1960 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
1638 1963 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
1639 1964 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
1640 1965 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
1641 1966 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
1685 2127 2.158219 TCAGAAACAGAGACTGGGGGTA 60.158 50.000 0.00 0.00 35.51 3.69
1700 2142 2.577593 GTAACTTCCCGCGCCTCT 59.422 61.111 0.00 0.00 0.00 3.69
1717 2159 4.594854 TTCCCGGCTTGGCTGCAA 62.595 61.111 0.50 0.00 35.87 4.08
1743 2185 3.984292 GCGGTTGCTCAGAAATCAG 57.016 52.632 0.00 0.00 38.39 2.90
1744 2186 1.442769 GCGGTTGCTCAGAAATCAGA 58.557 50.000 0.00 0.00 38.39 3.27
1745 2187 1.806542 GCGGTTGCTCAGAAATCAGAA 59.193 47.619 0.00 0.00 38.39 3.02
1746 2188 2.421424 GCGGTTGCTCAGAAATCAGAAT 59.579 45.455 0.00 0.00 38.39 2.40
1747 2189 3.119708 GCGGTTGCTCAGAAATCAGAATT 60.120 43.478 0.00 0.00 38.39 2.17
1757 2199 2.408271 AATCAGAATTCGCAGCAGGA 57.592 45.000 0.00 0.00 0.00 3.86
1758 2200 1.950828 ATCAGAATTCGCAGCAGGAG 58.049 50.000 0.00 0.00 0.00 3.69
1803 2253 1.067071 GTTACTCGTTAGGCAGGCAGT 60.067 52.381 0.00 0.00 0.00 4.40
1824 2274 4.363999 GTCATATGACGAAGGGAAGACAG 58.636 47.826 19.63 0.00 35.12 3.51
1834 2284 2.625639 AGGGAAGACAGTCCATTCAGT 58.374 47.619 0.00 0.00 39.70 3.41
1852 2302 5.041951 TCAGTTGTCAAAAACGGCATATC 57.958 39.130 0.00 0.00 35.13 1.63
1853 2303 4.083003 TCAGTTGTCAAAAACGGCATATCC 60.083 41.667 0.00 0.00 35.13 2.59
1854 2304 3.192633 AGTTGTCAAAAACGGCATATCCC 59.807 43.478 0.00 0.00 35.13 3.85
1870 2320 1.766494 TCCCGAAATGCTGCATGAAT 58.234 45.000 17.00 5.72 0.00 2.57
1873 2323 3.066621 TCCCGAAATGCTGCATGAATTAC 59.933 43.478 17.00 3.83 0.00 1.89
1886 2336 4.730035 GCATGAATTACTTGCAGACAGAGC 60.730 45.833 0.00 0.00 45.19 4.09
1887 2337 2.995939 TGAATTACTTGCAGACAGAGCG 59.004 45.455 0.00 0.00 33.85 5.03
1928 2378 2.171659 TGCTCGGTTGCTCCCATATAAA 59.828 45.455 0.00 0.00 0.00 1.40
1978 2428 3.366121 CAGCGTGAGTATGTTCAGAAGTG 59.634 47.826 0.00 0.00 0.00 3.16
1999 2449 5.901276 AGTGGCAATCCATTTCCTTGATATT 59.099 36.000 0.00 0.00 45.62 1.28
2041 2491 1.666872 ACGCGAGCAGGGTGTTAAC 60.667 57.895 15.93 0.00 44.86 2.01
2043 2493 1.019278 CGCGAGCAGGGTGTTAACAT 61.019 55.000 12.26 0.00 0.00 2.71
2105 2555 7.338957 TGCATCAGTTTCACATATCAAACCATA 59.661 33.333 0.00 0.00 33.66 2.74
2128 2578 9.269453 CATAATGAAGATATTCTGAGCAACTGA 57.731 33.333 1.19 0.00 0.00 3.41
2138 2588 0.793250 GAGCAACTGACTCTTTCGGC 59.207 55.000 0.00 0.00 33.21 5.54
2151 2602 4.720902 TCGGCCCACTGCACATGG 62.721 66.667 0.00 5.39 43.89 3.66
2234 2685 5.043432 TCCCCCAACCAATGAAGATATTCTT 60.043 40.000 1.19 0.00 39.87 2.52
2250 2701 7.106239 AGATATTCTTCGGACAGTTGTGAATT 58.894 34.615 0.00 0.00 0.00 2.17
2275 2726 3.721035 TCAGTGTGAAGTCAGACATGTG 58.279 45.455 1.15 1.59 41.97 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.910585 GGGCAGCCGGGTGTATCG 62.911 72.222 32.48 9.59 0.00 2.92
28 29 3.761218 TCAGAGAAGATGTGAGTCAGACC 59.239 47.826 0.00 0.00 0.00 3.85
29 30 5.581126 ATCAGAGAAGATGTGAGTCAGAC 57.419 43.478 0.00 0.00 34.15 3.51
33 34 7.918033 TCGAATTTATCAGAGAAGATGTGAGTC 59.082 37.037 0.00 0.00 34.15 3.36
52 53 2.552373 GGGACTGGAGGTGTTCGAATTT 60.552 50.000 0.00 0.00 0.00 1.82
54 55 0.613777 GGGACTGGAGGTGTTCGAAT 59.386 55.000 0.00 0.00 0.00 3.34
56 57 0.898789 GAGGGACTGGAGGTGTTCGA 60.899 60.000 0.00 0.00 41.55 3.71
70 71 3.240134 GACACCGCTTGCAGAGGGA 62.240 63.158 12.36 0.00 39.71 4.20
71 72 2.743928 GACACCGCTTGCAGAGGG 60.744 66.667 9.86 7.98 39.71 4.30
73 74 3.114616 CGGACACCGCTTGCAGAG 61.115 66.667 0.00 0.00 41.17 3.35
109 110 2.514803 AGAATTTGGTTGGGAGGAACG 58.485 47.619 0.00 0.00 0.00 3.95
116 117 6.160576 TCAGAAAAGAAGAATTTGGTTGGG 57.839 37.500 0.00 0.00 0.00 4.12
143 145 3.498397 GCAGGTCAGACTTCATCGAAAAA 59.502 43.478 0.00 0.00 0.00 1.94
145 147 2.300152 AGCAGGTCAGACTTCATCGAAA 59.700 45.455 0.00 0.00 0.00 3.46
148 150 1.638133 CAGCAGGTCAGACTTCATCG 58.362 55.000 0.00 0.00 0.00 3.84
149 151 1.552337 TCCAGCAGGTCAGACTTCATC 59.448 52.381 0.00 0.00 35.89 2.92
150 152 1.649321 TCCAGCAGGTCAGACTTCAT 58.351 50.000 0.00 0.00 35.89 2.57
151 153 1.552337 GATCCAGCAGGTCAGACTTCA 59.448 52.381 0.00 0.00 35.89 3.02
152 154 1.830477 AGATCCAGCAGGTCAGACTTC 59.170 52.381 0.00 0.00 35.89 3.01
153 155 1.554160 CAGATCCAGCAGGTCAGACTT 59.446 52.381 0.00 0.00 35.89 3.01
154 156 1.193323 CAGATCCAGCAGGTCAGACT 58.807 55.000 0.00 0.00 35.89 3.24
156 158 0.041684 TCCAGATCCAGCAGGTCAGA 59.958 55.000 0.00 0.00 35.89 3.27
157 159 1.129917 ATCCAGATCCAGCAGGTCAG 58.870 55.000 0.00 0.00 35.89 3.51
158 160 0.835276 CATCCAGATCCAGCAGGTCA 59.165 55.000 0.00 0.00 35.89 4.02
174 176 2.665537 CTCGAGTCACAGAAAGCACATC 59.334 50.000 3.62 0.00 0.00 3.06
177 181 2.055100 GACTCGAGTCACAGAAAGCAC 58.945 52.381 34.97 8.58 44.18 4.40
180 184 1.970447 CCGACTCGAGTCACAGAAAG 58.030 55.000 37.14 22.34 44.99 2.62
181 185 0.039437 GCCGACTCGAGTCACAGAAA 60.039 55.000 37.14 0.00 44.99 2.52
182 186 0.889638 AGCCGACTCGAGTCACAGAA 60.890 55.000 37.14 0.00 44.99 3.02
183 187 1.302591 AGCCGACTCGAGTCACAGA 60.303 57.895 37.14 0.00 44.99 3.41
184 188 1.154131 CAGCCGACTCGAGTCACAG 60.154 63.158 37.14 27.33 44.99 3.66
185 189 2.626780 CCAGCCGACTCGAGTCACA 61.627 63.158 37.14 0.00 44.99 3.58
186 190 2.179517 CCAGCCGACTCGAGTCAC 59.820 66.667 37.14 29.40 44.99 3.67
189 193 3.753434 CAGCCAGCCGACTCGAGT 61.753 66.667 20.18 20.18 0.00 4.18
201 205 0.249955 TCTCATCGAATGCACAGCCA 59.750 50.000 0.00 0.00 0.00 4.75
283 293 5.890334 TCAAGCTTTTAGTTCAACTTGGTG 58.110 37.500 0.00 0.00 36.15 4.17
292 302 7.118971 ACATCACTCTGATCAAGCTTTTAGTTC 59.881 37.037 0.00 0.00 34.28 3.01
366 378 3.783191 CTGTGTCATCACTCTGATCAGG 58.217 50.000 22.42 15.01 44.14 3.86
374 386 1.357258 CCTGCGCTGTGTCATCACTC 61.357 60.000 9.73 0.00 44.14 3.51
427 449 1.224069 TGCTTCTTCGTGTCAGCAGC 61.224 55.000 0.00 0.00 37.35 5.25
428 450 2.904664 TGCTTCTTCGTGTCAGCAG 58.095 52.632 0.00 0.00 37.35 4.24
429 451 0.389025 TCTGCTTCTTCGTGTCAGCA 59.611 50.000 0.00 0.00 39.98 4.41
470 492 0.739462 CGCAGCGTCCCACAGATAAA 60.739 55.000 6.65 0.00 0.00 1.40
472 494 2.348104 ACGCAGCGTCCCACAGATA 61.348 57.895 16.61 0.00 33.69 1.98
473 495 3.695606 ACGCAGCGTCCCACAGAT 61.696 61.111 16.61 0.00 33.69 2.90
474 496 4.662961 CACGCAGCGTCCCACAGA 62.663 66.667 19.98 0.00 38.32 3.41
492 669 3.672808 AGAGTTGTTCATTCAGCTCAGG 58.327 45.455 11.64 0.00 44.28 3.86
496 673 6.261826 GCCAATATAGAGTTGTTCATTCAGCT 59.738 38.462 0.00 0.00 0.00 4.24
497 674 6.038603 TGCCAATATAGAGTTGTTCATTCAGC 59.961 38.462 0.00 0.00 0.00 4.26
544 721 4.326548 GGTAACACACAGCGAGATAAAGAC 59.673 45.833 0.00 0.00 0.00 3.01
563 740 9.667107 GCTCTAATATAATATGCTTGGTGGTAA 57.333 33.333 0.00 0.00 0.00 2.85
588 765 2.086054 AGTAGCAGTGTAGCACTTGC 57.914 50.000 12.37 12.37 42.59 4.01
589 766 4.416620 GAGTAGTAGCAGTGTAGCACTTG 58.583 47.826 0.00 0.00 42.59 3.16
590 767 3.444388 GGAGTAGTAGCAGTGTAGCACTT 59.556 47.826 0.00 0.00 42.59 3.16
591 768 3.018149 GGAGTAGTAGCAGTGTAGCACT 58.982 50.000 0.00 0.00 46.51 4.40
592 769 2.099427 GGGAGTAGTAGCAGTGTAGCAC 59.901 54.545 0.00 0.00 36.85 4.40
593 770 2.291346 TGGGAGTAGTAGCAGTGTAGCA 60.291 50.000 0.00 0.00 36.85 3.49
594 771 2.099427 GTGGGAGTAGTAGCAGTGTAGC 59.901 54.545 0.00 0.00 0.00 3.58
595 772 3.622630 AGTGGGAGTAGTAGCAGTGTAG 58.377 50.000 0.00 0.00 0.00 2.74
596 773 3.618351 GAGTGGGAGTAGTAGCAGTGTA 58.382 50.000 0.00 0.00 0.00 2.90
597 774 2.448453 GAGTGGGAGTAGTAGCAGTGT 58.552 52.381 0.00 0.00 0.00 3.55
598 775 1.751924 GGAGTGGGAGTAGTAGCAGTG 59.248 57.143 0.00 0.00 0.00 3.66
599 776 1.342175 GGGAGTGGGAGTAGTAGCAGT 60.342 57.143 0.00 0.00 0.00 4.40
600 777 1.342076 TGGGAGTGGGAGTAGTAGCAG 60.342 57.143 0.00 0.00 0.00 4.24
601 778 0.708209 TGGGAGTGGGAGTAGTAGCA 59.292 55.000 0.00 0.00 0.00 3.49
602 779 1.404843 CTGGGAGTGGGAGTAGTAGC 58.595 60.000 0.00 0.00 0.00 3.58
603 780 1.342076 TGCTGGGAGTGGGAGTAGTAG 60.342 57.143 0.00 0.00 0.00 2.57
604 781 0.708209 TGCTGGGAGTGGGAGTAGTA 59.292 55.000 0.00 0.00 0.00 1.82
605 782 0.178903 TTGCTGGGAGTGGGAGTAGT 60.179 55.000 0.00 0.00 0.00 2.73
606 783 0.539051 CTTGCTGGGAGTGGGAGTAG 59.461 60.000 0.00 0.00 0.00 2.57
607 784 0.178903 ACTTGCTGGGAGTGGGAGTA 60.179 55.000 0.00 0.00 0.00 2.59
608 785 1.462238 ACTTGCTGGGAGTGGGAGT 60.462 57.895 0.00 0.00 0.00 3.85
609 786 1.002868 CACTTGCTGGGAGTGGGAG 60.003 63.158 0.00 0.00 40.58 4.30
610 787 3.160585 CACTTGCTGGGAGTGGGA 58.839 61.111 0.00 0.00 40.58 4.37
613 790 2.290260 TGTTATCCACTTGCTGGGAGTG 60.290 50.000 0.00 0.00 43.19 3.51
644 822 2.735663 CTGTCAGAATGTCACTGTGCTC 59.264 50.000 2.12 0.00 37.40 4.26
657 835 2.710377 AGTTGTGTGTTGCTGTCAGAA 58.290 42.857 3.32 0.00 0.00 3.02
658 836 2.401583 AGTTGTGTGTTGCTGTCAGA 57.598 45.000 3.32 0.00 0.00 3.27
724 911 1.613317 TAGCTAGCTTGGCGCCTCAA 61.613 55.000 29.70 13.95 40.39 3.02
854 1075 6.116126 GTGGTTTTTATAGAGTGGAGATGCT 58.884 40.000 0.00 0.00 0.00 3.79
863 1088 6.636454 TCCTCATGGTGGTTTTTATAGAGT 57.364 37.500 0.00 0.00 34.23 3.24
864 1089 5.529060 GCTCCTCATGGTGGTTTTTATAGAG 59.471 44.000 0.00 0.00 34.23 2.43
865 1090 5.045213 TGCTCCTCATGGTGGTTTTTATAGA 60.045 40.000 0.00 0.00 34.23 1.98
866 1091 5.066505 GTGCTCCTCATGGTGGTTTTTATAG 59.933 44.000 0.00 0.00 34.23 1.31
896 1129 1.270465 GGTTTTCAGCTGCCTGCAAAT 60.270 47.619 9.47 0.00 45.94 2.32
899 1132 2.554636 CGGTTTTCAGCTGCCTGCA 61.555 57.895 9.47 0.00 45.94 4.41
924 1160 1.845809 CTTCCTTCGGTGCTGTGTGC 61.846 60.000 0.00 0.00 43.25 4.57
1071 1330 4.069232 CGGTCCTTGAGCGCCTCA 62.069 66.667 2.29 4.38 45.89 3.86
1124 1386 3.047877 GCTGGAACACGAACGGGG 61.048 66.667 0.80 0.00 0.00 5.73
1207 1487 2.439104 GCCTCGCCTTCCTCCTCAT 61.439 63.158 0.00 0.00 0.00 2.90
1208 1488 3.077556 GCCTCGCCTTCCTCCTCA 61.078 66.667 0.00 0.00 0.00 3.86
1319 1605 5.243730 CCATCCAAGAAGATCTAGAGGACTC 59.756 48.000 0.00 0.00 29.07 3.36
1321 1607 4.262420 GCCATCCAAGAAGATCTAGAGGAC 60.262 50.000 0.00 0.00 29.07 3.85
1338 1624 0.466922 AATGGTGCAGCTAGCCATCC 60.467 55.000 18.08 9.77 41.68 3.51
1341 1627 0.680921 GGAAATGGTGCAGCTAGCCA 60.681 55.000 18.08 6.44 44.83 4.75
1356 1660 1.918262 ACATCATCCAGCCAGAGGAAA 59.082 47.619 0.00 0.00 38.93 3.13
1360 1664 1.810794 GCTCACATCATCCAGCCAGAG 60.811 57.143 0.00 0.00 0.00 3.35
1397 1712 4.006026 GTGTCTTACACTAGCTCGAGAC 57.994 50.000 18.75 7.74 45.27 3.36
1476 1801 1.153168 TAAGCATTGAGGAGGCCGC 60.153 57.895 0.00 0.00 35.10 6.53
1478 1803 1.162800 CGCTAAGCATTGAGGAGGCC 61.163 60.000 0.00 0.00 35.10 5.19
1479 1804 1.162800 CCGCTAAGCATTGAGGAGGC 61.163 60.000 0.00 0.00 34.64 4.70
1481 1806 0.462581 TGCCGCTAAGCATTGAGGAG 60.463 55.000 0.00 0.00 38.00 3.69
1482 1807 0.035534 TTGCCGCTAAGCATTGAGGA 60.036 50.000 0.00 0.00 43.64 3.71
1484 1809 1.945394 AGATTGCCGCTAAGCATTGAG 59.055 47.619 0.00 0.00 43.64 3.02
1485 1810 1.672363 CAGATTGCCGCTAAGCATTGA 59.328 47.619 0.00 0.00 43.64 2.57
1486 1811 1.862815 GCAGATTGCCGCTAAGCATTG 60.863 52.381 0.00 0.00 43.64 2.82
1595 1920 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
1596 1921 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
1597 1922 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
1599 1924 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
1600 1925 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
1601 1926 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
1602 1927 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
1603 1928 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
1605 1930 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
1606 1931 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
1608 1933 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
1610 1935 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
1612 1937 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
1613 1938 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
1614 1939 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
1615 1940 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
1616 1941 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
1618 1943 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
1619 1944 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
1621 1946 5.352284 AGACAACAACAACAACAACAACAA 58.648 33.333 0.00 0.00 0.00 2.83
1622 1947 4.938080 AGACAACAACAACAACAACAACA 58.062 34.783 0.00 0.00 0.00 3.33
1623 1948 4.384547 GGAGACAACAACAACAACAACAAC 59.615 41.667 0.00 0.00 0.00 3.32
1624 1949 4.038042 TGGAGACAACAACAACAACAACAA 59.962 37.500 0.00 0.00 37.44 2.83
1625 1950 3.570125 TGGAGACAACAACAACAACAACA 59.430 39.130 0.00 0.00 37.44 3.33
1641 1966 0.543749 CCTTCTGGGGTCATGGAGAC 59.456 60.000 0.00 0.00 46.83 3.36
1685 2127 2.047179 GAAGAGGCGCGGGAAGTT 60.047 61.111 8.83 0.00 0.00 2.66
1700 2142 3.884704 ATTGCAGCCAAGCCGGGAA 62.885 57.895 2.18 0.00 33.80 3.97
1739 2181 1.483827 TCTCCTGCTGCGAATTCTGAT 59.516 47.619 3.52 0.00 0.00 2.90
1740 2182 0.897621 TCTCCTGCTGCGAATTCTGA 59.102 50.000 3.52 0.00 0.00 3.27
1741 2183 1.288350 CTCTCCTGCTGCGAATTCTG 58.712 55.000 3.52 0.00 0.00 3.02
1742 2184 0.177604 CCTCTCCTGCTGCGAATTCT 59.822 55.000 3.52 0.00 0.00 2.40
1743 2185 0.813210 CCCTCTCCTGCTGCGAATTC 60.813 60.000 0.00 0.00 0.00 2.17
1744 2186 1.222936 CCCTCTCCTGCTGCGAATT 59.777 57.895 0.00 0.00 0.00 2.17
1745 2187 2.906458 CCCTCTCCTGCTGCGAAT 59.094 61.111 0.00 0.00 0.00 3.34
1746 2188 4.087892 GCCCTCTCCTGCTGCGAA 62.088 66.667 0.00 0.00 0.00 4.70
1757 2199 2.492025 TGGATTGTATGAAGGCCCTCT 58.508 47.619 0.00 0.00 0.00 3.69
1758 2200 3.181440 TGATGGATTGTATGAAGGCCCTC 60.181 47.826 0.00 0.00 0.00 4.30
1803 2253 4.023980 ACTGTCTTCCCTTCGTCATATGA 58.976 43.478 0.00 0.00 0.00 2.15
1824 2274 4.041723 CCGTTTTTGACAACTGAATGGAC 58.958 43.478 9.32 0.00 0.00 4.02
1834 2284 2.162608 CGGGATATGCCGTTTTTGACAA 59.837 45.455 25.96 0.00 37.63 3.18
1852 2302 2.589798 AATTCATGCAGCATTTCGGG 57.410 45.000 4.69 0.00 0.00 5.14
1853 2303 4.297299 AGTAATTCATGCAGCATTTCGG 57.703 40.909 4.69 0.00 0.00 4.30
1854 2304 4.027132 GCAAGTAATTCATGCAGCATTTCG 60.027 41.667 4.69 0.00 40.05 3.46
1855 2305 4.865925 TGCAAGTAATTCATGCAGCATTTC 59.134 37.500 4.69 0.00 44.16 2.17
1856 2306 4.823157 TGCAAGTAATTCATGCAGCATTT 58.177 34.783 4.69 0.07 44.16 2.32
1857 2307 4.459390 TGCAAGTAATTCATGCAGCATT 57.541 36.364 4.69 0.00 44.16 3.56
1870 2320 0.670546 GCCGCTCTGTCTGCAAGTAA 60.671 55.000 0.00 0.00 33.76 2.24
1873 2323 3.123620 GGCCGCTCTGTCTGCAAG 61.124 66.667 0.00 0.00 0.00 4.01
1878 2328 2.925170 AACCAGGCCGCTCTGTCT 60.925 61.111 0.00 0.00 33.14 3.41
1879 2329 2.435059 GAACCAGGCCGCTCTGTC 60.435 66.667 0.00 0.00 33.14 3.51
1886 2336 1.376037 GACTTCAGGAACCAGGCCG 60.376 63.158 0.00 0.00 0.00 6.13
1887 2337 1.002011 GGACTTCAGGAACCAGGCC 60.002 63.158 0.00 0.00 0.00 5.19
1948 2398 2.236223 ATACTCACGCTGCTGCTGCT 62.236 55.000 25.43 11.68 40.48 4.24
1949 2399 1.812922 ATACTCACGCTGCTGCTGC 60.813 57.895 19.94 19.94 36.97 5.25
1950 2400 0.738762 ACATACTCACGCTGCTGCTG 60.739 55.000 14.03 10.65 36.97 4.41
1951 2401 0.036952 AACATACTCACGCTGCTGCT 60.037 50.000 14.03 0.00 36.97 4.24
1952 2402 0.371645 GAACATACTCACGCTGCTGC 59.628 55.000 5.34 5.34 0.00 5.25
1953 2403 1.657594 CTGAACATACTCACGCTGCTG 59.342 52.381 0.00 0.00 0.00 4.41
1954 2404 1.546029 TCTGAACATACTCACGCTGCT 59.454 47.619 0.00 0.00 0.00 4.24
1955 2405 1.996292 TCTGAACATACTCACGCTGC 58.004 50.000 0.00 0.00 0.00 5.25
1956 2406 3.366121 CACTTCTGAACATACTCACGCTG 59.634 47.826 0.00 0.00 0.00 5.18
1957 2407 3.579709 CACTTCTGAACATACTCACGCT 58.420 45.455 0.00 0.00 0.00 5.07
1958 2408 2.668457 CCACTTCTGAACATACTCACGC 59.332 50.000 0.00 0.00 0.00 5.34
1959 2409 2.668457 GCCACTTCTGAACATACTCACG 59.332 50.000 0.00 0.00 0.00 4.35
1960 2410 3.664107 TGCCACTTCTGAACATACTCAC 58.336 45.455 0.00 0.00 0.00 3.51
1964 2414 4.009675 TGGATTGCCACTTCTGAACATAC 58.990 43.478 0.00 0.00 39.92 2.39
1978 2428 7.227314 GGAAAAATATCAAGGAAATGGATTGCC 59.773 37.037 0.00 0.00 35.56 4.52
1999 2449 0.949105 GAGGCTCGTCGCTTGGAAAA 60.949 55.000 0.00 0.00 39.13 2.29
2041 2491 5.220548 CGATTCCTGTCTTGAGCAAGTTATG 60.221 44.000 9.79 0.00 39.38 1.90
2043 2493 4.021456 TCGATTCCTGTCTTGAGCAAGTTA 60.021 41.667 9.79 0.80 39.38 2.24
2105 2555 7.337167 AGTCAGTTGCTCAGAATATCTTCATT 58.663 34.615 0.00 0.00 33.56 2.57
2128 2578 2.032681 GCAGTGGGCCGAAAGAGT 59.967 61.111 0.00 0.00 36.11 3.24
2250 2701 5.647658 ACATGTCTGACTTCACACTGAAAAA 59.352 36.000 9.51 0.00 35.73 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.