Multiple sequence alignment - TraesCS2D01G534000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G534000 chr2D 100.000 2865 0 0 1 2865 618082880 618085744 0.000000e+00 5291.0
1 TraesCS2D01G534000 chr2D 94.674 1746 52 10 1146 2865 486322352 486320622 0.000000e+00 2671.0
2 TraesCS2D01G534000 chr2D 89.853 749 37 15 591 1301 486323099 486322352 0.000000e+00 926.0
3 TraesCS2D01G534000 chr2D 100.000 43 0 0 1 43 21932715 21932757 2.370000e-11 80.5
4 TraesCS2D01G534000 chr6D 97.607 2298 32 2 590 2865 433910485 433908189 0.000000e+00 3917.0
5 TraesCS2D01G534000 chr6D 100.000 43 0 0 1 43 429468344 429468302 2.370000e-11 80.5
6 TraesCS2D01G534000 chr2B 84.880 873 96 15 1626 2475 24833917 24834776 0.000000e+00 848.0
7 TraesCS2D01G534000 chr2B 83.609 665 76 18 1829 2465 255856546 255857205 6.830000e-166 593.0
8 TraesCS2D01G534000 chr2B 85.714 462 26 15 168 592 754018625 754019083 4.350000e-123 451.0
9 TraesCS2D01G534000 chr2B 88.462 234 25 2 1175 1407 184135352 184135120 6.040000e-72 281.0
10 TraesCS2D01G534000 chr2B 95.946 74 0 2 172 245 754153246 754153316 1.800000e-22 117.0
11 TraesCS2D01G534000 chr2B 100.000 32 0 0 176 207 754153217 754153248 3.080000e-05 60.2
12 TraesCS2D01G534000 chr7D 83.198 863 99 17 1626 2464 19033005 19032165 0.000000e+00 749.0
13 TraesCS2D01G534000 chr7D 94.545 55 3 0 2811 2865 638152074 638152128 5.090000e-13 86.1
14 TraesCS2D01G534000 chr7D 100.000 43 0 0 1 43 201160698 201160740 2.370000e-11 80.5
15 TraesCS2D01G534000 chr4D 82.964 857 97 20 1643 2475 4595640 4594809 0.000000e+00 728.0
16 TraesCS2D01G534000 chr4D 100.000 43 0 0 1 43 365184072 365184114 2.370000e-11 80.5
17 TraesCS2D01G534000 chr4A 95.726 351 14 1 2515 2865 735598641 735598990 5.360000e-157 564.0
18 TraesCS2D01G534000 chr4A 89.189 74 4 4 1336 1407 740175781 740175852 3.930000e-14 89.8
19 TraesCS2D01G534000 chr3B 95.442 351 15 1 2515 2865 73590157 73590506 2.490000e-155 558.0
20 TraesCS2D01G534000 chr3B 100.000 44 0 0 1 44 532665696 532665739 6.580000e-12 82.4
21 TraesCS2D01G534000 chr2A 85.882 425 25 14 171 592 748701653 748702045 1.230000e-113 420.0
22 TraesCS2D01G534000 chrUn 94.882 254 13 0 2515 2768 476196479 476196226 5.750000e-107 398.0
23 TraesCS2D01G534000 chrUn 100.000 205 0 0 2661 2865 478035193 478035397 2.080000e-101 379.0
24 TraesCS2D01G534000 chrUn 100.000 33 0 0 591 623 77055853 77055885 8.570000e-06 62.1
25 TraesCS2D01G534000 chr4B 100.000 44 0 0 1 44 48101643 48101686 6.580000e-12 82.4
26 TraesCS2D01G534000 chr6B 100.000 43 0 0 1 43 459061662 459061704 2.370000e-11 80.5
27 TraesCS2D01G534000 chr3D 100.000 43 0 0 1 43 432025765 432025807 2.370000e-11 80.5
28 TraesCS2D01G534000 chr3D 86.441 59 5 3 590 646 335211170 335211227 8.570000e-06 62.1
29 TraesCS2D01G534000 chr3A 100.000 43 0 0 1 43 672868022 672867980 2.370000e-11 80.5
30 TraesCS2D01G534000 chr1A 86.207 58 5 3 591 646 163093431 163093487 3.080000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G534000 chr2D 618082880 618085744 2864 False 5291.0 5291 100.0000 1 2865 1 chr2D.!!$F2 2864
1 TraesCS2D01G534000 chr2D 486320622 486323099 2477 True 1798.5 2671 92.2635 591 2865 2 chr2D.!!$R1 2274
2 TraesCS2D01G534000 chr6D 433908189 433910485 2296 True 3917.0 3917 97.6070 590 2865 1 chr6D.!!$R2 2275
3 TraesCS2D01G534000 chr2B 24833917 24834776 859 False 848.0 848 84.8800 1626 2475 1 chr2B.!!$F1 849
4 TraesCS2D01G534000 chr2B 255856546 255857205 659 False 593.0 593 83.6090 1829 2465 1 chr2B.!!$F2 636
5 TraesCS2D01G534000 chr7D 19032165 19033005 840 True 749.0 749 83.1980 1626 2464 1 chr7D.!!$R1 838
6 TraesCS2D01G534000 chr4D 4594809 4595640 831 True 728.0 728 82.9640 1643 2475 1 chr4D.!!$R1 832

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
587 588 0.036765 TCATGGTAGAACGTGTGGGC 60.037 55.0 0.0 0.0 0.0 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2104 2343 2.634815 TTTTGTACCCCGCAACAGTA 57.365 45.0 0.0 0.0 0.0 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.577229 TGTGTGGATCGTGCATGC 58.423 55.556 11.82 11.82 0.00 4.06
18 19 1.302351 TGTGTGGATCGTGCATGCA 60.302 52.632 18.46 18.46 0.00 3.96
35 36 2.738521 ACGGATCGTGTGCACAGC 60.739 61.111 22.40 14.14 39.18 4.40
36 37 2.738139 CGGATCGTGTGCACAGCA 60.738 61.111 22.40 10.22 35.60 4.41
45 46 4.560743 TGCACAGCACTTCCGGCA 62.561 61.111 0.00 0.00 31.71 5.69
46 47 3.058160 GCACAGCACTTCCGGCAT 61.058 61.111 0.00 0.00 0.00 4.40
47 48 3.044059 GCACAGCACTTCCGGCATC 62.044 63.158 0.00 0.00 0.00 3.91
48 49 1.672030 CACAGCACTTCCGGCATCA 60.672 57.895 0.00 0.00 0.00 3.07
49 50 1.376424 ACAGCACTTCCGGCATCAG 60.376 57.895 0.00 0.00 0.00 2.90
50 51 1.376424 CAGCACTTCCGGCATCAGT 60.376 57.895 0.00 0.00 0.00 3.41
51 52 0.957395 CAGCACTTCCGGCATCAGTT 60.957 55.000 0.00 0.00 0.00 3.16
52 53 0.250901 AGCACTTCCGGCATCAGTTT 60.251 50.000 0.00 0.00 0.00 2.66
53 54 0.169009 GCACTTCCGGCATCAGTTTC 59.831 55.000 0.00 0.00 0.00 2.78
54 55 1.522668 CACTTCCGGCATCAGTTTCA 58.477 50.000 0.00 0.00 0.00 2.69
55 56 1.197721 CACTTCCGGCATCAGTTTCAC 59.802 52.381 0.00 0.00 0.00 3.18
56 57 0.443869 CTTCCGGCATCAGTTTCACG 59.556 55.000 0.00 0.00 0.00 4.35
57 58 0.250124 TTCCGGCATCAGTTTCACGT 60.250 50.000 0.00 0.00 0.00 4.49
58 59 0.604073 TCCGGCATCAGTTTCACGTA 59.396 50.000 0.00 0.00 0.00 3.57
59 60 0.719465 CCGGCATCAGTTTCACGTAC 59.281 55.000 0.00 0.00 0.00 3.67
60 61 0.719465 CGGCATCAGTTTCACGTACC 59.281 55.000 0.00 0.00 0.00 3.34
61 62 1.803334 GGCATCAGTTTCACGTACCA 58.197 50.000 0.00 0.00 0.00 3.25
62 63 2.147958 GGCATCAGTTTCACGTACCAA 58.852 47.619 0.00 0.00 0.00 3.67
63 64 2.550606 GGCATCAGTTTCACGTACCAAA 59.449 45.455 0.00 0.00 0.00 3.28
64 65 3.551551 GCATCAGTTTCACGTACCAAAC 58.448 45.455 8.27 8.27 33.42 2.93
65 66 3.608474 GCATCAGTTTCACGTACCAAACC 60.608 47.826 11.40 0.00 33.66 3.27
66 67 3.263489 TCAGTTTCACGTACCAAACCA 57.737 42.857 11.40 0.17 33.66 3.67
67 68 3.811083 TCAGTTTCACGTACCAAACCAT 58.189 40.909 11.40 0.00 33.66 3.55
68 69 4.200874 TCAGTTTCACGTACCAAACCATT 58.799 39.130 11.40 0.00 33.66 3.16
69 70 4.273969 TCAGTTTCACGTACCAAACCATTC 59.726 41.667 11.40 0.00 33.66 2.67
70 71 3.566742 AGTTTCACGTACCAAACCATTCC 59.433 43.478 11.40 0.00 33.66 3.01
71 72 3.495434 TTCACGTACCAAACCATTCCT 57.505 42.857 0.00 0.00 0.00 3.36
72 73 3.495434 TCACGTACCAAACCATTCCTT 57.505 42.857 0.00 0.00 0.00 3.36
73 74 3.404899 TCACGTACCAAACCATTCCTTC 58.595 45.455 0.00 0.00 0.00 3.46
74 75 3.142951 CACGTACCAAACCATTCCTTCA 58.857 45.455 0.00 0.00 0.00 3.02
75 76 3.756434 CACGTACCAAACCATTCCTTCAT 59.244 43.478 0.00 0.00 0.00 2.57
76 77 4.217550 CACGTACCAAACCATTCCTTCATT 59.782 41.667 0.00 0.00 0.00 2.57
77 78 4.830600 ACGTACCAAACCATTCCTTCATTT 59.169 37.500 0.00 0.00 0.00 2.32
78 79 5.048294 ACGTACCAAACCATTCCTTCATTTC 60.048 40.000 0.00 0.00 0.00 2.17
79 80 4.519540 ACCAAACCATTCCTTCATTTCG 57.480 40.909 0.00 0.00 0.00 3.46
80 81 4.148838 ACCAAACCATTCCTTCATTTCGA 58.851 39.130 0.00 0.00 0.00 3.71
81 82 4.218417 ACCAAACCATTCCTTCATTTCGAG 59.782 41.667 0.00 0.00 0.00 4.04
82 83 4.168760 CAAACCATTCCTTCATTTCGAGC 58.831 43.478 0.00 0.00 0.00 5.03
83 84 2.369394 ACCATTCCTTCATTTCGAGCC 58.631 47.619 0.00 0.00 0.00 4.70
84 85 2.290896 ACCATTCCTTCATTTCGAGCCA 60.291 45.455 0.00 0.00 0.00 4.75
85 86 2.754552 CCATTCCTTCATTTCGAGCCAA 59.245 45.455 0.00 0.00 0.00 4.52
86 87 3.181493 CCATTCCTTCATTTCGAGCCAAG 60.181 47.826 0.00 0.00 0.00 3.61
87 88 2.113860 TCCTTCATTTCGAGCCAAGG 57.886 50.000 7.77 7.77 35.81 3.61
88 89 1.098050 CCTTCATTTCGAGCCAAGGG 58.902 55.000 6.62 0.00 31.52 3.95
109 110 4.778415 CGCAGACCGTCGTCAGGG 62.778 72.222 0.00 0.00 41.87 4.45
111 112 3.680786 CAGACCGTCGTCAGGGCA 61.681 66.667 2.65 0.00 41.87 5.36
112 113 3.374402 AGACCGTCGTCAGGGCAG 61.374 66.667 2.65 0.00 41.87 4.85
113 114 3.681835 GACCGTCGTCAGGGCAGT 61.682 66.667 0.00 0.00 38.99 4.40
114 115 3.916392 GACCGTCGTCAGGGCAGTG 62.916 68.421 0.00 0.00 38.99 3.66
115 116 3.991051 CCGTCGTCAGGGCAGTGT 61.991 66.667 0.00 0.00 0.00 3.55
116 117 2.734723 CGTCGTCAGGGCAGTGTG 60.735 66.667 0.00 0.00 0.00 3.82
117 118 2.357517 GTCGTCAGGGCAGTGTGG 60.358 66.667 0.00 0.00 0.00 4.17
118 119 2.523168 TCGTCAGGGCAGTGTGGA 60.523 61.111 0.00 0.00 0.00 4.02
119 120 2.047844 CGTCAGGGCAGTGTGGAG 60.048 66.667 0.00 0.00 0.00 3.86
120 121 2.359230 GTCAGGGCAGTGTGGAGC 60.359 66.667 0.00 0.00 0.00 4.70
121 122 2.527624 TCAGGGCAGTGTGGAGCT 60.528 61.111 0.00 0.00 0.00 4.09
122 123 2.359602 CAGGGCAGTGTGGAGCTG 60.360 66.667 0.00 0.00 37.06 4.24
127 128 3.963222 CAGTGTGGAGCTGCTCAC 58.037 61.111 28.95 26.93 31.08 3.51
128 129 1.670406 CAGTGTGGAGCTGCTCACC 60.670 63.158 29.35 18.91 31.08 4.02
129 130 2.142761 AGTGTGGAGCTGCTCACCA 61.143 57.895 29.35 21.08 32.82 4.17
130 131 1.002868 GTGTGGAGCTGCTCACCAT 60.003 57.895 28.95 0.00 37.75 3.55
131 132 1.023513 GTGTGGAGCTGCTCACCATC 61.024 60.000 28.95 13.13 37.75 3.51
132 133 1.297689 GTGGAGCTGCTCACCATCA 59.702 57.895 28.95 15.50 37.75 3.07
133 134 1.023513 GTGGAGCTGCTCACCATCAC 61.024 60.000 28.95 22.03 37.75 3.06
134 135 1.297689 GGAGCTGCTCACCATCACA 59.702 57.895 28.95 0.00 31.08 3.58
135 136 0.321919 GGAGCTGCTCACCATCACAA 60.322 55.000 28.95 0.00 31.08 3.33
136 137 1.085091 GAGCTGCTCACCATCACAAG 58.915 55.000 24.02 0.00 0.00 3.16
137 138 0.322277 AGCTGCTCACCATCACAAGG 60.322 55.000 0.00 0.00 0.00 3.61
138 139 0.321919 GCTGCTCACCATCACAAGGA 60.322 55.000 0.00 0.00 0.00 3.36
139 140 1.883638 GCTGCTCACCATCACAAGGAA 60.884 52.381 0.00 0.00 0.00 3.36
140 141 2.719739 CTGCTCACCATCACAAGGAAT 58.280 47.619 0.00 0.00 0.00 3.01
141 142 2.681848 CTGCTCACCATCACAAGGAATC 59.318 50.000 0.00 0.00 0.00 2.52
142 143 2.040145 TGCTCACCATCACAAGGAATCA 59.960 45.455 0.00 0.00 0.00 2.57
143 144 2.681848 GCTCACCATCACAAGGAATCAG 59.318 50.000 0.00 0.00 0.00 2.90
144 145 2.681848 CTCACCATCACAAGGAATCAGC 59.318 50.000 0.00 0.00 0.00 4.26
145 146 2.306805 TCACCATCACAAGGAATCAGCT 59.693 45.455 0.00 0.00 0.00 4.24
146 147 3.087031 CACCATCACAAGGAATCAGCTT 58.913 45.455 0.00 0.00 0.00 3.74
147 148 3.087031 ACCATCACAAGGAATCAGCTTG 58.913 45.455 0.00 0.00 0.00 4.01
148 149 2.426024 CCATCACAAGGAATCAGCTTGG 59.574 50.000 0.00 0.00 32.86 3.61
149 150 1.538047 TCACAAGGAATCAGCTTGGC 58.462 50.000 0.00 0.00 32.86 4.52
150 151 0.529378 CACAAGGAATCAGCTTGGCC 59.471 55.000 0.00 0.00 32.86 5.36
151 152 0.962356 ACAAGGAATCAGCTTGGCCG 60.962 55.000 0.00 0.00 32.86 6.13
152 153 2.048603 AAGGAATCAGCTTGGCCGC 61.049 57.895 0.00 0.00 0.00 6.53
153 154 3.880846 GGAATCAGCTTGGCCGCG 61.881 66.667 0.00 0.00 34.40 6.46
154 155 3.880846 GAATCAGCTTGGCCGCGG 61.881 66.667 24.05 24.05 34.40 6.46
155 156 4.408821 AATCAGCTTGGCCGCGGA 62.409 61.111 33.48 5.65 38.42 5.54
159 160 4.947147 AGCTTGGCCGCGGACAAA 62.947 61.111 43.01 27.88 43.25 2.83
160 161 3.972276 GCTTGGCCGCGGACAAAA 61.972 61.111 43.01 26.22 43.25 2.44
161 162 2.725008 CTTGGCCGCGGACAAAAA 59.275 55.556 43.01 25.43 43.25 1.94
162 163 1.288752 CTTGGCCGCGGACAAAAAT 59.711 52.632 43.01 0.00 43.25 1.82
163 164 1.006805 TTGGCCGCGGACAAAAATG 60.007 52.632 43.10 6.38 40.62 2.32
164 165 1.739338 TTGGCCGCGGACAAAAATGT 61.739 50.000 43.10 0.00 40.62 2.71
165 166 0.889638 TGGCCGCGGACAAAAATGTA 60.890 50.000 36.27 4.81 0.00 2.29
166 167 0.455464 GGCCGCGGACAAAAATGTAC 60.455 55.000 33.48 5.78 0.00 2.90
167 168 0.519961 GCCGCGGACAAAAATGTACT 59.480 50.000 33.48 0.00 0.00 2.73
168 169 1.733360 GCCGCGGACAAAAATGTACTA 59.267 47.619 33.48 0.00 0.00 1.82
169 170 2.475022 GCCGCGGACAAAAATGTACTAC 60.475 50.000 33.48 0.00 0.00 2.73
170 171 2.997986 CCGCGGACAAAAATGTACTACT 59.002 45.455 24.07 0.00 0.00 2.57
171 172 4.175516 CCGCGGACAAAAATGTACTACTA 58.824 43.478 24.07 0.00 0.00 1.82
172 173 4.266976 CCGCGGACAAAAATGTACTACTAG 59.733 45.833 24.07 0.00 0.00 2.57
173 174 4.860907 CGCGGACAAAAATGTACTACTAGT 59.139 41.667 0.00 0.00 0.00 2.57
174 175 5.346822 CGCGGACAAAAATGTACTACTAGTT 59.653 40.000 0.00 0.00 0.00 2.24
175 176 6.453396 CGCGGACAAAAATGTACTACTAGTTC 60.453 42.308 0.00 0.00 0.00 3.01
176 177 6.366877 GCGGACAAAAATGTACTACTAGTTCA 59.633 38.462 0.00 0.00 30.18 3.18
177 178 7.411588 GCGGACAAAAATGTACTACTAGTTCAG 60.412 40.741 0.00 0.00 29.13 3.02
178 179 7.811236 CGGACAAAAATGTACTACTAGTTCAGA 59.189 37.037 0.00 0.00 29.13 3.27
179 180 9.485206 GGACAAAAATGTACTACTAGTTCAGAA 57.515 33.333 0.00 0.00 29.13 3.02
187 188 8.625786 TGTACTACTAGTTCAGAATGTACACA 57.374 34.615 0.00 0.00 39.02 3.72
188 189 8.727910 TGTACTACTAGTTCAGAATGTACACAG 58.272 37.037 0.00 0.00 39.02 3.66
189 190 6.622549 ACTACTAGTTCAGAATGTACACAGC 58.377 40.000 0.00 0.00 39.02 4.40
190 191 4.486090 ACTAGTTCAGAATGTACACAGCG 58.514 43.478 0.00 0.00 39.02 5.18
191 192 3.660501 AGTTCAGAATGTACACAGCGA 57.339 42.857 0.00 0.00 39.02 4.93
192 193 3.318017 AGTTCAGAATGTACACAGCGAC 58.682 45.455 0.00 0.00 39.02 5.19
193 194 3.057019 GTTCAGAATGTACACAGCGACA 58.943 45.455 0.00 0.00 36.31 4.35
194 195 2.946564 TCAGAATGTACACAGCGACAG 58.053 47.619 0.00 0.00 37.40 3.51
195 196 1.391485 CAGAATGTACACAGCGACAGC 59.609 52.381 0.00 0.00 45.58 4.40
196 197 0.721718 GAATGTACACAGCGACAGCC 59.278 55.000 0.00 0.00 46.67 4.85
197 198 0.321671 AATGTACACAGCGACAGCCT 59.678 50.000 0.00 0.00 46.67 4.58
198 199 1.182667 ATGTACACAGCGACAGCCTA 58.817 50.000 0.00 0.00 46.67 3.93
199 200 1.182667 TGTACACAGCGACAGCCTAT 58.817 50.000 0.00 0.00 46.67 2.57
200 201 1.135112 TGTACACAGCGACAGCCTATG 60.135 52.381 0.00 0.00 46.67 2.23
201 202 1.134367 GTACACAGCGACAGCCTATGA 59.866 52.381 0.00 0.00 46.67 2.15
202 203 0.174389 ACACAGCGACAGCCTATGAG 59.826 55.000 0.00 0.00 46.67 2.90
203 204 1.142748 ACAGCGACAGCCTATGAGC 59.857 57.895 0.00 0.00 46.67 4.26
204 205 1.142531 CAGCGACAGCCTATGAGCA 59.857 57.895 0.00 0.00 46.67 4.26
205 206 0.875040 CAGCGACAGCCTATGAGCAG 60.875 60.000 0.00 0.00 46.67 4.24
206 207 1.142748 GCGACAGCCTATGAGCAGT 59.857 57.895 0.00 0.00 36.56 4.40
207 208 0.385751 GCGACAGCCTATGAGCAGTA 59.614 55.000 0.00 0.00 36.56 2.74
208 209 1.866063 GCGACAGCCTATGAGCAGTAC 60.866 57.143 0.00 0.00 36.56 2.73
209 210 1.678627 CGACAGCCTATGAGCAGTACT 59.321 52.381 0.00 0.00 31.99 2.73
210 211 2.099921 CGACAGCCTATGAGCAGTACTT 59.900 50.000 0.00 0.00 31.99 2.24
211 212 3.429547 CGACAGCCTATGAGCAGTACTTT 60.430 47.826 0.00 0.00 31.99 2.66
212 213 3.866651 ACAGCCTATGAGCAGTACTTTG 58.133 45.455 0.00 0.00 29.76 2.77
213 214 2.611292 CAGCCTATGAGCAGTACTTTGC 59.389 50.000 0.00 0.00 44.41 3.68
222 223 3.691049 GCAGTACTTTGCTGACAACAA 57.309 42.857 0.00 0.00 40.89 2.83
223 224 3.363178 GCAGTACTTTGCTGACAACAAC 58.637 45.455 0.00 0.00 40.89 3.32
224 225 3.181501 GCAGTACTTTGCTGACAACAACA 60.182 43.478 0.00 0.00 40.89 3.33
225 226 4.591202 CAGTACTTTGCTGACAACAACAG 58.409 43.478 0.00 0.00 34.87 3.16
226 227 4.332543 CAGTACTTTGCTGACAACAACAGA 59.667 41.667 0.00 0.00 37.54 3.41
227 228 4.941263 AGTACTTTGCTGACAACAACAGAA 59.059 37.500 0.00 0.00 37.54 3.02
228 229 4.096732 ACTTTGCTGACAACAACAGAAC 57.903 40.909 0.00 0.00 37.54 3.01
229 230 3.505680 ACTTTGCTGACAACAACAGAACA 59.494 39.130 0.00 0.00 37.54 3.18
230 231 4.022416 ACTTTGCTGACAACAACAGAACAA 60.022 37.500 0.00 0.00 37.54 2.83
231 232 3.763097 TGCTGACAACAACAGAACAAG 57.237 42.857 0.00 0.00 37.54 3.16
232 233 2.423185 TGCTGACAACAACAGAACAAGG 59.577 45.455 0.00 0.00 37.54 3.61
233 234 2.423538 GCTGACAACAACAGAACAAGGT 59.576 45.455 0.00 0.00 37.54 3.50
234 235 3.625764 GCTGACAACAACAGAACAAGGTA 59.374 43.478 0.00 0.00 37.54 3.08
235 236 4.275936 GCTGACAACAACAGAACAAGGTAT 59.724 41.667 0.00 0.00 37.54 2.73
236 237 5.560953 GCTGACAACAACAGAACAAGGTATC 60.561 44.000 0.00 0.00 37.54 2.24
237 238 4.819630 TGACAACAACAGAACAAGGTATCC 59.180 41.667 0.00 0.00 0.00 2.59
238 239 5.048846 ACAACAACAGAACAAGGTATCCT 57.951 39.130 0.00 0.00 33.87 3.24
239 240 4.821805 ACAACAACAGAACAAGGTATCCTG 59.178 41.667 0.00 0.00 32.13 3.86
240 241 3.412386 ACAACAGAACAAGGTATCCTGC 58.588 45.455 0.00 0.00 32.13 4.85
241 242 3.073062 ACAACAGAACAAGGTATCCTGCT 59.927 43.478 0.00 0.00 32.13 4.24
242 243 4.286032 ACAACAGAACAAGGTATCCTGCTA 59.714 41.667 0.00 0.00 32.13 3.49
243 244 5.221843 ACAACAGAACAAGGTATCCTGCTAA 60.222 40.000 0.00 0.00 32.13 3.09
244 245 4.833390 ACAGAACAAGGTATCCTGCTAAC 58.167 43.478 0.00 0.00 32.13 2.34
245 246 4.192317 CAGAACAAGGTATCCTGCTAACC 58.808 47.826 0.00 0.00 32.13 2.85
246 247 3.844211 AGAACAAGGTATCCTGCTAACCA 59.156 43.478 0.00 0.00 35.64 3.67
247 248 3.914426 ACAAGGTATCCTGCTAACCAG 57.086 47.619 0.00 0.00 41.41 4.00
248 249 3.182152 ACAAGGTATCCTGCTAACCAGT 58.818 45.455 0.00 0.00 40.06 4.00
249 250 3.587506 ACAAGGTATCCTGCTAACCAGTT 59.412 43.478 0.00 0.00 40.06 3.16
250 251 4.042934 ACAAGGTATCCTGCTAACCAGTTT 59.957 41.667 0.00 0.00 40.06 2.66
251 252 4.222124 AGGTATCCTGCTAACCAGTTTG 57.778 45.455 0.00 0.00 40.06 2.93
252 253 3.844211 AGGTATCCTGCTAACCAGTTTGA 59.156 43.478 0.00 0.00 40.06 2.69
253 254 4.080863 AGGTATCCTGCTAACCAGTTTGAG 60.081 45.833 0.00 0.00 40.06 3.02
254 255 2.185004 TCCTGCTAACCAGTTTGAGC 57.815 50.000 0.00 0.00 40.06 4.26
255 256 1.419762 TCCTGCTAACCAGTTTGAGCA 59.580 47.619 7.55 7.55 42.47 4.26
256 257 2.040278 TCCTGCTAACCAGTTTGAGCAT 59.960 45.455 8.11 0.00 43.61 3.79
257 258 2.421424 CCTGCTAACCAGTTTGAGCATC 59.579 50.000 8.11 0.00 43.61 3.91
258 259 2.421424 CTGCTAACCAGTTTGAGCATCC 59.579 50.000 8.11 0.00 43.61 3.51
259 260 1.745653 GCTAACCAGTTTGAGCATCCC 59.254 52.381 1.33 0.00 34.96 3.85
260 261 2.369394 CTAACCAGTTTGAGCATCCCC 58.631 52.381 0.00 0.00 0.00 4.81
261 262 0.482446 AACCAGTTTGAGCATCCCCA 59.518 50.000 0.00 0.00 0.00 4.96
262 263 0.482446 ACCAGTTTGAGCATCCCCAA 59.518 50.000 0.00 0.00 0.00 4.12
263 264 1.077663 ACCAGTTTGAGCATCCCCAAT 59.922 47.619 0.00 0.00 0.00 3.16
264 265 1.753073 CCAGTTTGAGCATCCCCAATC 59.247 52.381 0.00 0.00 0.00 2.67
265 266 1.402968 CAGTTTGAGCATCCCCAATCG 59.597 52.381 0.00 0.00 0.00 3.34
266 267 1.281867 AGTTTGAGCATCCCCAATCGA 59.718 47.619 0.00 0.00 0.00 3.59
267 268 2.092212 AGTTTGAGCATCCCCAATCGAT 60.092 45.455 0.00 0.00 0.00 3.59
268 269 2.689983 GTTTGAGCATCCCCAATCGATT 59.310 45.455 4.39 4.39 0.00 3.34
269 270 1.971481 TGAGCATCCCCAATCGATTG 58.029 50.000 27.66 27.66 37.52 2.67
270 271 0.595095 GAGCATCCCCAATCGATTGC 59.405 55.000 28.90 19.05 36.48 3.56
271 272 1.168407 AGCATCCCCAATCGATTGCG 61.168 55.000 28.90 21.76 36.48 4.85
272 273 1.283793 CATCCCCAATCGATTGCGC 59.716 57.895 28.90 0.00 36.48 6.09
273 274 1.149174 ATCCCCAATCGATTGCGCT 59.851 52.632 28.90 12.15 36.48 5.92
274 275 1.168407 ATCCCCAATCGATTGCGCTG 61.168 55.000 28.90 16.73 36.48 5.18
275 276 1.819208 CCCCAATCGATTGCGCTGA 60.819 57.895 28.90 1.34 36.48 4.26
276 277 1.645455 CCCAATCGATTGCGCTGAG 59.355 57.895 28.90 15.75 36.48 3.35
277 278 1.091771 CCCAATCGATTGCGCTGAGT 61.092 55.000 28.90 0.00 36.48 3.41
278 279 0.729116 CCAATCGATTGCGCTGAGTT 59.271 50.000 28.90 0.00 36.48 3.01
279 280 1.267732 CCAATCGATTGCGCTGAGTTC 60.268 52.381 28.90 0.00 36.48 3.01
280 281 1.394572 CAATCGATTGCGCTGAGTTCA 59.605 47.619 24.15 0.00 37.46 3.18
281 282 1.002366 ATCGATTGCGCTGAGTTCAC 58.998 50.000 9.73 0.00 37.46 3.18
282 283 0.038251 TCGATTGCGCTGAGTTCACT 60.038 50.000 9.73 0.00 37.46 3.41
283 284 0.094216 CGATTGCGCTGAGTTCACTG 59.906 55.000 9.73 0.00 0.00 3.66
284 285 1.432514 GATTGCGCTGAGTTCACTGA 58.567 50.000 9.73 0.00 0.00 3.41
285 286 1.392853 GATTGCGCTGAGTTCACTGAG 59.607 52.381 9.73 0.00 0.00 3.35
286 287 0.601046 TTGCGCTGAGTTCACTGAGG 60.601 55.000 9.73 0.00 0.00 3.86
287 288 2.386660 GCGCTGAGTTCACTGAGGC 61.387 63.158 0.00 0.00 0.00 4.70
288 289 1.005748 CGCTGAGTTCACTGAGGCA 60.006 57.895 0.00 0.00 0.00 4.75
289 290 1.013005 CGCTGAGTTCACTGAGGCAG 61.013 60.000 0.00 0.00 37.52 4.85
290 291 1.297456 GCTGAGTTCACTGAGGCAGC 61.297 60.000 11.62 11.62 41.38 5.25
291 292 0.673022 CTGAGTTCACTGAGGCAGCC 60.673 60.000 1.84 1.84 34.37 4.85
292 293 1.372683 GAGTTCACTGAGGCAGCCA 59.627 57.895 15.80 0.00 34.37 4.75
293 294 0.952984 GAGTTCACTGAGGCAGCCAC 60.953 60.000 15.80 8.35 34.37 5.01
294 295 1.227943 GTTCACTGAGGCAGCCACA 60.228 57.895 15.80 13.47 34.37 4.17
295 296 1.227943 TTCACTGAGGCAGCCACAC 60.228 57.895 15.80 5.24 34.37 3.82
296 297 1.699054 TTCACTGAGGCAGCCACACT 61.699 55.000 15.80 0.00 34.37 3.55
297 298 1.670406 CACTGAGGCAGCCACACTC 60.670 63.158 15.80 2.36 34.37 3.51
298 299 2.046507 CTGAGGCAGCCACACTCC 60.047 66.667 15.80 0.00 0.00 3.85
299 300 2.848679 TGAGGCAGCCACACTCCA 60.849 61.111 15.80 0.00 0.00 3.86
300 301 2.046507 GAGGCAGCCACACTCCAG 60.047 66.667 15.80 0.00 0.00 3.86
301 302 3.618780 GAGGCAGCCACACTCCAGG 62.619 68.421 15.80 0.00 0.00 4.45
302 303 3.958860 GGCAGCCACACTCCAGGT 61.959 66.667 6.55 0.00 0.00 4.00
303 304 2.113986 GCAGCCACACTCCAGGTT 59.886 61.111 0.00 0.00 0.00 3.50
304 305 1.529244 GCAGCCACACTCCAGGTTT 60.529 57.895 0.00 0.00 0.00 3.27
305 306 1.799258 GCAGCCACACTCCAGGTTTG 61.799 60.000 0.00 0.00 0.00 2.93
306 307 1.529244 AGCCACACTCCAGGTTTGC 60.529 57.895 0.00 0.00 0.00 3.68
307 308 1.827789 GCCACACTCCAGGTTTGCA 60.828 57.895 0.00 0.00 0.00 4.08
308 309 1.181098 GCCACACTCCAGGTTTGCAT 61.181 55.000 0.00 0.00 0.00 3.96
309 310 0.883833 CCACACTCCAGGTTTGCATC 59.116 55.000 0.00 0.00 0.00 3.91
310 311 0.883833 CACACTCCAGGTTTGCATCC 59.116 55.000 0.00 0.00 0.00 3.51
311 312 0.478072 ACACTCCAGGTTTGCATCCA 59.522 50.000 10.40 0.00 0.00 3.41
312 313 1.076024 ACACTCCAGGTTTGCATCCAT 59.924 47.619 10.40 0.00 0.00 3.41
313 314 2.173519 CACTCCAGGTTTGCATCCATT 58.826 47.619 10.40 0.00 0.00 3.16
314 315 2.564062 CACTCCAGGTTTGCATCCATTT 59.436 45.455 10.40 0.00 0.00 2.32
315 316 2.564062 ACTCCAGGTTTGCATCCATTTG 59.436 45.455 10.40 1.58 0.00 2.32
316 317 1.275856 TCCAGGTTTGCATCCATTTGC 59.724 47.619 10.40 0.00 43.07 3.68
317 318 1.276989 CCAGGTTTGCATCCATTTGCT 59.723 47.619 10.40 0.00 43.18 3.91
318 319 2.613691 CAGGTTTGCATCCATTTGCTC 58.386 47.619 10.40 0.00 43.18 4.26
319 320 1.551883 AGGTTTGCATCCATTTGCTCC 59.448 47.619 10.40 0.00 43.18 4.70
320 321 1.275856 GGTTTGCATCCATTTGCTCCA 59.724 47.619 0.00 0.00 43.18 3.86
321 322 2.093341 GGTTTGCATCCATTTGCTCCAT 60.093 45.455 0.00 0.00 43.18 3.41
322 323 3.192466 GTTTGCATCCATTTGCTCCATC 58.808 45.455 0.00 0.00 43.18 3.51
323 324 2.447408 TGCATCCATTTGCTCCATCT 57.553 45.000 0.00 0.00 43.18 2.90
324 325 2.028876 TGCATCCATTTGCTCCATCTG 58.971 47.619 0.00 0.00 43.18 2.90
325 326 1.269621 GCATCCATTTGCTCCATCTGC 60.270 52.381 0.00 0.00 39.57 4.26
326 327 2.307768 CATCCATTTGCTCCATCTGCT 58.692 47.619 0.00 0.00 0.00 4.24
327 328 2.048444 TCCATTTGCTCCATCTGCTC 57.952 50.000 0.00 0.00 0.00 4.26
328 329 1.282738 TCCATTTGCTCCATCTGCTCA 59.717 47.619 0.00 0.00 0.00 4.26
329 330 1.404391 CCATTTGCTCCATCTGCTCAC 59.596 52.381 0.00 0.00 0.00 3.51
330 331 2.089201 CATTTGCTCCATCTGCTCACA 58.911 47.619 0.00 0.00 0.00 3.58
331 332 1.817357 TTTGCTCCATCTGCTCACAG 58.183 50.000 0.00 0.00 45.95 3.66
342 343 1.953559 TGCTCACAGACCTGTCAAAC 58.046 50.000 0.00 0.00 42.83 2.93
343 344 1.486310 TGCTCACAGACCTGTCAAACT 59.514 47.619 0.00 0.00 42.83 2.66
344 345 1.869767 GCTCACAGACCTGTCAAACTG 59.130 52.381 0.00 0.00 42.83 3.16
345 346 2.483714 GCTCACAGACCTGTCAAACTGA 60.484 50.000 0.00 0.00 42.83 3.41
356 357 3.587403 GTCAAACTGACAGTTTCGGTC 57.413 47.619 26.94 13.30 44.47 4.79
357 358 2.287103 GTCAAACTGACAGTTTCGGTCC 59.713 50.000 26.94 11.76 44.47 4.46
358 359 2.093394 TCAAACTGACAGTTTCGGTCCA 60.093 45.455 26.94 7.65 44.47 4.02
359 360 1.949465 AACTGACAGTTTCGGTCCAC 58.051 50.000 15.23 0.00 43.68 4.02
360 361 0.106149 ACTGACAGTTTCGGTCCACC 59.894 55.000 1.07 0.00 40.03 4.61
361 362 0.393077 CTGACAGTTTCGGTCCACCT 59.607 55.000 0.00 0.00 34.36 4.00
362 363 0.105964 TGACAGTTTCGGTCCACCTG 59.894 55.000 0.00 0.00 34.36 4.00
363 364 1.227853 ACAGTTTCGGTCCACCTGC 60.228 57.895 0.00 0.00 0.00 4.85
364 365 1.227823 CAGTTTCGGTCCACCTGCA 60.228 57.895 0.00 0.00 0.00 4.41
365 366 1.227853 AGTTTCGGTCCACCTGCAC 60.228 57.895 0.00 0.00 0.00 4.57
366 367 1.525077 GTTTCGGTCCACCTGCACA 60.525 57.895 0.00 0.00 0.00 4.57
367 368 0.889186 GTTTCGGTCCACCTGCACAT 60.889 55.000 0.00 0.00 0.00 3.21
368 369 0.888736 TTTCGGTCCACCTGCACATG 60.889 55.000 0.00 0.00 0.00 3.21
369 370 2.746412 TTCGGTCCACCTGCACATGG 62.746 60.000 5.26 5.26 37.32 3.66
370 371 3.064324 GGTCCACCTGCACATGGC 61.064 66.667 6.61 0.00 45.13 4.40
382 383 3.620929 GCACATGGCATGACAAGATAG 57.379 47.619 32.74 12.42 43.97 2.08
383 384 2.947652 GCACATGGCATGACAAGATAGT 59.052 45.455 32.74 5.02 43.97 2.12
384 385 4.129380 GCACATGGCATGACAAGATAGTA 58.871 43.478 32.74 0.00 43.97 1.82
385 386 4.024556 GCACATGGCATGACAAGATAGTAC 60.025 45.833 32.74 0.00 43.97 2.73
386 387 5.118286 CACATGGCATGACAAGATAGTACA 58.882 41.667 32.74 0.00 0.00 2.90
387 388 5.761726 CACATGGCATGACAAGATAGTACAT 59.238 40.000 32.74 3.01 0.00 2.29
388 389 5.994054 ACATGGCATGACAAGATAGTACATC 59.006 40.000 32.74 0.00 0.00 3.06
389 390 5.876651 TGGCATGACAAGATAGTACATCT 57.123 39.130 0.00 0.00 0.00 2.90
390 391 5.604565 TGGCATGACAAGATAGTACATCTG 58.395 41.667 0.00 6.15 0.00 2.90
391 392 5.129320 TGGCATGACAAGATAGTACATCTGT 59.871 40.000 0.00 8.37 0.00 3.41
392 393 6.051717 GGCATGACAAGATAGTACATCTGTT 58.948 40.000 0.00 0.83 0.00 3.16
393 394 7.147742 TGGCATGACAAGATAGTACATCTGTTA 60.148 37.037 0.00 6.66 0.00 2.41
394 395 7.875041 GGCATGACAAGATAGTACATCTGTTAT 59.125 37.037 0.00 8.02 0.00 1.89
395 396 8.706936 GCATGACAAGATAGTACATCTGTTATG 58.293 37.037 19.85 19.85 32.82 1.90
396 397 9.971922 CATGACAAGATAGTACATCTGTTATGA 57.028 33.333 19.70 0.00 32.21 2.15
410 411 9.725019 ACATCTGTTATGATTCACTAAGAACAA 57.275 29.630 0.00 0.00 39.49 2.83
439 440 9.913310 TCATATACAAATTTCCTGTATGTTGGA 57.087 29.630 10.30 0.00 39.68 3.53
443 444 7.537596 ACAAATTTCCTGTATGTTGGAATGA 57.462 32.000 0.00 0.00 41.36 2.57
444 445 7.378181 ACAAATTTCCTGTATGTTGGAATGAC 58.622 34.615 0.00 0.00 41.36 3.06
445 446 5.818136 ATTTCCTGTATGTTGGAATGACG 57.182 39.130 0.00 0.00 41.36 4.35
446 447 4.545208 TTCCTGTATGTTGGAATGACGA 57.455 40.909 0.00 0.00 37.42 4.20
447 448 4.753516 TCCTGTATGTTGGAATGACGAT 57.246 40.909 0.00 0.00 0.00 3.73
448 449 4.441792 TCCTGTATGTTGGAATGACGATG 58.558 43.478 0.00 0.00 0.00 3.84
449 450 3.561310 CCTGTATGTTGGAATGACGATGG 59.439 47.826 0.00 0.00 0.00 3.51
450 451 4.191544 CTGTATGTTGGAATGACGATGGT 58.808 43.478 0.00 0.00 0.00 3.55
451 452 3.938334 TGTATGTTGGAATGACGATGGTG 59.062 43.478 0.00 0.00 0.00 4.17
452 453 1.819928 TGTTGGAATGACGATGGTGG 58.180 50.000 0.00 0.00 0.00 4.61
453 454 1.349357 TGTTGGAATGACGATGGTGGA 59.651 47.619 0.00 0.00 0.00 4.02
454 455 2.009774 GTTGGAATGACGATGGTGGAG 58.990 52.381 0.00 0.00 0.00 3.86
455 456 1.567357 TGGAATGACGATGGTGGAGA 58.433 50.000 0.00 0.00 0.00 3.71
456 457 2.118679 TGGAATGACGATGGTGGAGAT 58.881 47.619 0.00 0.00 0.00 2.75
457 458 3.304829 TGGAATGACGATGGTGGAGATA 58.695 45.455 0.00 0.00 0.00 1.98
458 459 3.321968 TGGAATGACGATGGTGGAGATAG 59.678 47.826 0.00 0.00 0.00 2.08
459 460 3.321497 GAATGACGATGGTGGAGATAGC 58.679 50.000 0.00 0.00 0.00 2.97
460 461 2.073252 TGACGATGGTGGAGATAGCT 57.927 50.000 0.00 0.00 0.00 3.32
461 462 1.683385 TGACGATGGTGGAGATAGCTG 59.317 52.381 0.00 0.00 0.00 4.24
462 463 1.000283 GACGATGGTGGAGATAGCTGG 60.000 57.143 0.00 0.00 0.00 4.85
463 464 0.320247 CGATGGTGGAGATAGCTGGC 60.320 60.000 0.00 0.00 0.00 4.85
464 465 0.761187 GATGGTGGAGATAGCTGGCA 59.239 55.000 0.00 0.00 0.00 4.92
465 466 0.471617 ATGGTGGAGATAGCTGGCAC 59.528 55.000 0.00 0.00 0.00 5.01
466 467 1.147153 GGTGGAGATAGCTGGCACC 59.853 63.158 0.00 0.00 0.00 5.01
467 468 1.227380 GTGGAGATAGCTGGCACCG 60.227 63.158 0.00 0.00 0.00 4.94
468 469 2.423446 GGAGATAGCTGGCACCGG 59.577 66.667 0.00 0.00 0.00 5.28
498 499 4.680237 TGCGGGGCACTGACGAAG 62.680 66.667 0.00 0.00 31.71 3.79
499 500 4.373116 GCGGGGCACTGACGAAGA 62.373 66.667 0.00 0.00 0.00 2.87
500 501 2.432628 CGGGGCACTGACGAAGAC 60.433 66.667 0.00 0.00 0.00 3.01
501 502 2.932234 CGGGGCACTGACGAAGACT 61.932 63.158 0.00 0.00 0.00 3.24
502 503 1.079750 GGGGCACTGACGAAGACTC 60.080 63.158 0.00 0.00 0.00 3.36
503 504 1.079750 GGGCACTGACGAAGACTCC 60.080 63.158 0.00 0.00 0.00 3.85
504 505 1.536943 GGGCACTGACGAAGACTCCT 61.537 60.000 0.00 0.00 0.00 3.69
505 506 0.318762 GGCACTGACGAAGACTCCTT 59.681 55.000 0.00 0.00 34.81 3.36
506 507 1.670380 GGCACTGACGAAGACTCCTTC 60.670 57.143 0.00 0.00 44.08 3.46
507 508 1.670380 GCACTGACGAAGACTCCTTCC 60.670 57.143 0.00 0.00 44.55 3.46
508 509 1.889829 CACTGACGAAGACTCCTTCCT 59.110 52.381 0.00 0.00 44.55 3.36
509 510 2.297597 CACTGACGAAGACTCCTTCCTT 59.702 50.000 0.00 0.00 44.55 3.36
510 511 3.506455 CACTGACGAAGACTCCTTCCTTA 59.494 47.826 0.00 0.00 44.55 2.69
511 512 4.158764 CACTGACGAAGACTCCTTCCTTAT 59.841 45.833 0.00 0.00 44.55 1.73
512 513 4.399934 ACTGACGAAGACTCCTTCCTTATC 59.600 45.833 0.00 0.00 44.55 1.75
513 514 4.601084 TGACGAAGACTCCTTCCTTATCT 58.399 43.478 0.00 0.00 44.55 1.98
514 515 5.017490 TGACGAAGACTCCTTCCTTATCTT 58.983 41.667 0.00 0.00 44.55 2.40
515 516 5.105716 TGACGAAGACTCCTTCCTTATCTTG 60.106 44.000 0.00 0.00 44.55 3.02
516 517 4.160626 ACGAAGACTCCTTCCTTATCTTGG 59.839 45.833 0.00 0.00 44.55 3.61
517 518 4.447290 GAAGACTCCTTCCTTATCTTGGC 58.553 47.826 0.00 0.00 42.24 4.52
518 519 2.774809 AGACTCCTTCCTTATCTTGGCC 59.225 50.000 0.00 0.00 0.00 5.36
519 520 2.774809 GACTCCTTCCTTATCTTGGCCT 59.225 50.000 3.32 0.00 0.00 5.19
520 521 3.193782 ACTCCTTCCTTATCTTGGCCTT 58.806 45.455 3.32 0.00 0.00 4.35
521 522 3.593780 ACTCCTTCCTTATCTTGGCCTTT 59.406 43.478 3.32 0.00 0.00 3.11
522 523 4.203226 CTCCTTCCTTATCTTGGCCTTTC 58.797 47.826 3.32 0.00 0.00 2.62
523 524 3.053619 TCCTTCCTTATCTTGGCCTTTCC 60.054 47.826 3.32 0.00 0.00 3.13
524 525 3.053320 CCTTCCTTATCTTGGCCTTTCCT 60.053 47.826 3.32 0.00 35.26 3.36
525 526 4.166144 CCTTCCTTATCTTGGCCTTTCCTA 59.834 45.833 3.32 0.00 35.26 2.94
526 527 5.163045 CCTTCCTTATCTTGGCCTTTCCTAT 60.163 44.000 3.32 0.00 35.26 2.57
527 528 6.044404 CCTTCCTTATCTTGGCCTTTCCTATA 59.956 42.308 3.32 0.00 35.26 1.31
528 529 7.257199 CCTTCCTTATCTTGGCCTTTCCTATAT 60.257 40.741 3.32 0.00 35.26 0.86
529 530 7.020827 TCCTTATCTTGGCCTTTCCTATATG 57.979 40.000 3.32 0.00 35.26 1.78
530 531 6.012508 TCCTTATCTTGGCCTTTCCTATATGG 60.013 42.308 3.32 5.68 35.26 2.74
531 532 6.240292 CCTTATCTTGGCCTTTCCTATATGGT 60.240 42.308 3.32 0.00 37.07 3.55
532 533 4.437682 TCTTGGCCTTTCCTATATGGTG 57.562 45.455 3.32 0.00 37.07 4.17
533 534 3.138283 TCTTGGCCTTTCCTATATGGTGG 59.862 47.826 3.32 0.00 37.07 4.61
534 535 2.782922 TGGCCTTTCCTATATGGTGGA 58.217 47.619 3.32 0.00 37.07 4.02
535 536 2.711009 TGGCCTTTCCTATATGGTGGAG 59.289 50.000 3.32 0.00 37.07 3.86
536 537 2.711547 GGCCTTTCCTATATGGTGGAGT 59.288 50.000 0.00 0.00 37.07 3.85
537 538 3.496870 GGCCTTTCCTATATGGTGGAGTG 60.497 52.174 0.00 0.00 37.07 3.51
538 539 3.391296 GCCTTTCCTATATGGTGGAGTGA 59.609 47.826 0.00 0.00 37.07 3.41
539 540 4.042187 GCCTTTCCTATATGGTGGAGTGAT 59.958 45.833 0.00 0.00 37.07 3.06
540 541 5.799213 CCTTTCCTATATGGTGGAGTGATC 58.201 45.833 0.00 0.00 37.07 2.92
541 542 5.545723 CCTTTCCTATATGGTGGAGTGATCT 59.454 44.000 0.00 0.00 37.07 2.75
542 543 6.043706 CCTTTCCTATATGGTGGAGTGATCTT 59.956 42.308 0.00 0.00 37.07 2.40
543 544 6.425210 TTCCTATATGGTGGAGTGATCTTG 57.575 41.667 0.00 0.00 37.07 3.02
544 545 4.284490 TCCTATATGGTGGAGTGATCTTGC 59.716 45.833 0.00 0.00 37.07 4.01
545 546 3.498774 ATATGGTGGAGTGATCTTGCC 57.501 47.619 0.00 0.00 0.00 4.52
546 547 0.107508 ATGGTGGAGTGATCTTGCCG 60.108 55.000 0.00 0.00 0.00 5.69
547 548 2.109126 GGTGGAGTGATCTTGCCGC 61.109 63.158 0.00 0.00 0.00 6.53
548 549 2.125552 TGGAGTGATCTTGCCGCG 60.126 61.111 0.00 0.00 0.00 6.46
549 550 2.892425 GGAGTGATCTTGCCGCGG 60.892 66.667 24.05 24.05 0.00 6.46
550 551 3.567797 GAGTGATCTTGCCGCGGC 61.568 66.667 42.35 42.35 42.35 6.53
562 563 2.125310 CGCGGCAATGGAGGTGTA 60.125 61.111 0.00 0.00 0.00 2.90
563 564 2.173669 CGCGGCAATGGAGGTGTAG 61.174 63.158 0.00 0.00 0.00 2.74
564 565 2.472909 GCGGCAATGGAGGTGTAGC 61.473 63.158 0.00 0.00 0.00 3.58
565 566 2.173669 CGGCAATGGAGGTGTAGCG 61.174 63.158 0.00 0.00 0.00 4.26
566 567 1.819632 GGCAATGGAGGTGTAGCGG 60.820 63.158 0.00 0.00 0.00 5.52
567 568 1.078426 GCAATGGAGGTGTAGCGGT 60.078 57.895 0.00 0.00 0.00 5.68
568 569 0.676782 GCAATGGAGGTGTAGCGGTT 60.677 55.000 0.00 0.00 0.00 4.44
569 570 1.369625 CAATGGAGGTGTAGCGGTTC 58.630 55.000 0.00 0.00 0.00 3.62
570 571 0.981183 AATGGAGGTGTAGCGGTTCA 59.019 50.000 0.00 0.00 0.00 3.18
571 572 1.204146 ATGGAGGTGTAGCGGTTCAT 58.796 50.000 0.00 0.00 0.00 2.57
572 573 0.249120 TGGAGGTGTAGCGGTTCATG 59.751 55.000 0.00 0.00 0.00 3.07
573 574 0.462047 GGAGGTGTAGCGGTTCATGG 60.462 60.000 0.00 0.00 0.00 3.66
574 575 0.249398 GAGGTGTAGCGGTTCATGGT 59.751 55.000 0.00 0.00 0.00 3.55
575 576 1.479323 GAGGTGTAGCGGTTCATGGTA 59.521 52.381 0.00 0.00 0.00 3.25
576 577 1.480954 AGGTGTAGCGGTTCATGGTAG 59.519 52.381 0.00 0.00 0.00 3.18
577 578 1.479323 GGTGTAGCGGTTCATGGTAGA 59.521 52.381 0.00 0.00 0.00 2.59
578 579 2.093869 GGTGTAGCGGTTCATGGTAGAA 60.094 50.000 0.00 0.00 0.00 2.10
579 580 2.928116 GTGTAGCGGTTCATGGTAGAAC 59.072 50.000 0.00 0.00 45.50 3.01
580 581 2.190981 GTAGCGGTTCATGGTAGAACG 58.809 52.381 0.00 0.00 46.81 3.95
581 582 0.606604 AGCGGTTCATGGTAGAACGT 59.393 50.000 0.00 0.00 46.81 3.99
582 583 0.719465 GCGGTTCATGGTAGAACGTG 59.281 55.000 0.00 0.00 46.81 4.49
583 584 1.938016 GCGGTTCATGGTAGAACGTGT 60.938 52.381 0.00 0.00 46.81 4.49
584 585 1.724623 CGGTTCATGGTAGAACGTGTG 59.275 52.381 0.00 0.00 46.81 3.82
585 586 2.073816 GGTTCATGGTAGAACGTGTGG 58.926 52.381 0.00 0.00 46.81 4.17
586 587 2.073816 GTTCATGGTAGAACGTGTGGG 58.926 52.381 0.00 0.00 38.58 4.61
587 588 0.036765 TCATGGTAGAACGTGTGGGC 60.037 55.000 0.00 0.00 0.00 5.36
588 589 1.079405 ATGGTAGAACGTGTGGGCG 60.079 57.895 0.00 0.00 37.94 6.13
659 660 2.280119 GCGCATGCGATCTGGGTA 60.280 61.111 41.98 0.00 42.83 3.69
661 662 1.068083 CGCATGCGATCTGGGTAGT 59.932 57.895 35.82 0.00 42.83 2.73
672 673 2.125391 GGGTAGTTCGTTCCGCCC 60.125 66.667 0.00 0.00 0.00 6.13
1193 1257 2.578480 TCTCTTCCTCACTGCTCCTCTA 59.422 50.000 0.00 0.00 0.00 2.43
1195 1259 2.041755 TCTTCCTCACTGCTCCTCTACA 59.958 50.000 0.00 0.00 0.00 2.74
1240 1304 1.973281 GTGGAGACGGGTACACGGA 60.973 63.158 23.48 0.00 38.39 4.69
1358 1587 6.878389 CAGGTGAGCTCTTTCTTTCTAATTCT 59.122 38.462 16.19 0.00 0.00 2.40
1582 1814 4.344865 TTTCCTGTGCCTCCGCCC 62.345 66.667 0.00 0.00 0.00 6.13
2007 2240 5.491078 TCTTAGGATGTAACAAGTTCCCCAT 59.509 40.000 0.00 0.00 0.00 4.00
2104 2343 5.128499 TGTGTGATTCAAAAAGAACCCACAT 59.872 36.000 13.89 0.00 45.95 3.21
2187 2428 4.082245 TGAGCAGAACGATACAGATCAACA 60.082 41.667 0.00 0.00 31.78 3.33
2301 2547 4.670221 GCAGAATGTTCCGTGATTCTTCAC 60.670 45.833 0.00 0.00 43.33 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.302351 TGCATGCACGATCCACACA 60.302 52.632 18.46 0.00 0.00 3.72
1 2 1.135315 GTGCATGCACGATCCACAC 59.865 57.895 33.20 9.23 37.19 3.82
2 3 3.577229 GTGCATGCACGATCCACA 58.423 55.556 33.20 0.00 37.19 4.17
18 19 2.738521 GCTGTGCACACGATCCGT 60.739 61.111 17.42 0.00 42.36 4.69
19 20 2.738139 TGCTGTGCACACGATCCG 60.738 61.111 17.42 6.27 31.71 4.18
28 29 3.848301 ATGCCGGAAGTGCTGTGCA 62.848 57.895 5.05 0.00 34.85 4.57
29 30 3.044059 GATGCCGGAAGTGCTGTGC 62.044 63.158 5.05 0.00 0.00 4.57
30 31 1.642037 CTGATGCCGGAAGTGCTGTG 61.642 60.000 5.05 0.00 0.00 3.66
31 32 1.376424 CTGATGCCGGAAGTGCTGT 60.376 57.895 5.05 0.00 0.00 4.40
32 33 0.957395 AACTGATGCCGGAAGTGCTG 60.957 55.000 5.05 0.00 0.00 4.41
33 34 0.250901 AAACTGATGCCGGAAGTGCT 60.251 50.000 5.05 0.00 0.00 4.40
34 35 0.169009 GAAACTGATGCCGGAAGTGC 59.831 55.000 5.05 0.00 0.00 4.40
35 36 1.197721 GTGAAACTGATGCCGGAAGTG 59.802 52.381 5.05 0.00 0.00 3.16
36 37 1.523758 GTGAAACTGATGCCGGAAGT 58.476 50.000 5.05 0.00 0.00 3.01
37 38 0.443869 CGTGAAACTGATGCCGGAAG 59.556 55.000 5.05 0.00 31.75 3.46
38 39 0.250124 ACGTGAAACTGATGCCGGAA 60.250 50.000 5.05 0.00 31.75 4.30
39 40 0.604073 TACGTGAAACTGATGCCGGA 59.396 50.000 5.05 0.00 31.75 5.14
40 41 0.719465 GTACGTGAAACTGATGCCGG 59.281 55.000 0.00 0.00 31.75 6.13
41 42 0.719465 GGTACGTGAAACTGATGCCG 59.281 55.000 0.00 0.00 31.75 5.69
42 43 1.803334 TGGTACGTGAAACTGATGCC 58.197 50.000 0.00 0.00 31.75 4.40
43 44 3.551551 GTTTGGTACGTGAAACTGATGC 58.448 45.455 0.00 0.00 31.75 3.91
44 45 3.562141 TGGTTTGGTACGTGAAACTGATG 59.438 43.478 15.14 0.00 33.41 3.07
45 46 3.811083 TGGTTTGGTACGTGAAACTGAT 58.189 40.909 15.14 0.00 33.41 2.90
46 47 3.263489 TGGTTTGGTACGTGAAACTGA 57.737 42.857 15.14 4.72 33.41 3.41
47 48 4.533222 GAATGGTTTGGTACGTGAAACTG 58.467 43.478 15.14 0.00 33.41 3.16
48 49 3.566742 GGAATGGTTTGGTACGTGAAACT 59.433 43.478 15.14 1.65 33.41 2.66
49 50 3.566742 AGGAATGGTTTGGTACGTGAAAC 59.433 43.478 0.00 4.75 0.00 2.78
50 51 3.822940 AGGAATGGTTTGGTACGTGAAA 58.177 40.909 0.00 0.00 0.00 2.69
51 52 3.495434 AGGAATGGTTTGGTACGTGAA 57.505 42.857 0.00 0.00 0.00 3.18
52 53 3.181453 TGAAGGAATGGTTTGGTACGTGA 60.181 43.478 0.00 0.00 0.00 4.35
53 54 3.142951 TGAAGGAATGGTTTGGTACGTG 58.857 45.455 0.00 0.00 0.00 4.49
54 55 3.495434 TGAAGGAATGGTTTGGTACGT 57.505 42.857 0.00 0.00 0.00 3.57
55 56 5.385509 AAATGAAGGAATGGTTTGGTACG 57.614 39.130 0.00 0.00 0.00 3.67
56 57 5.182380 TCGAAATGAAGGAATGGTTTGGTAC 59.818 40.000 0.00 0.00 0.00 3.34
57 58 5.317808 TCGAAATGAAGGAATGGTTTGGTA 58.682 37.500 0.00 0.00 0.00 3.25
58 59 4.148838 TCGAAATGAAGGAATGGTTTGGT 58.851 39.130 0.00 0.00 0.00 3.67
59 60 4.737054 CTCGAAATGAAGGAATGGTTTGG 58.263 43.478 0.00 0.00 0.00 3.28
60 61 4.168760 GCTCGAAATGAAGGAATGGTTTG 58.831 43.478 0.00 0.00 0.00 2.93
61 62 3.193479 GGCTCGAAATGAAGGAATGGTTT 59.807 43.478 0.00 0.00 0.00 3.27
62 63 2.755103 GGCTCGAAATGAAGGAATGGTT 59.245 45.455 0.00 0.00 0.00 3.67
63 64 2.290896 TGGCTCGAAATGAAGGAATGGT 60.291 45.455 0.00 0.00 0.00 3.55
64 65 2.368439 TGGCTCGAAATGAAGGAATGG 58.632 47.619 0.00 0.00 0.00 3.16
65 66 3.181493 CCTTGGCTCGAAATGAAGGAATG 60.181 47.826 6.39 0.00 36.09 2.67
66 67 3.019564 CCTTGGCTCGAAATGAAGGAAT 58.980 45.455 6.39 0.00 36.09 3.01
67 68 2.436417 CCTTGGCTCGAAATGAAGGAA 58.564 47.619 6.39 0.00 36.09 3.36
68 69 1.340017 CCCTTGGCTCGAAATGAAGGA 60.340 52.381 11.79 0.00 36.09 3.36
69 70 1.098050 CCCTTGGCTCGAAATGAAGG 58.902 55.000 0.00 0.00 34.15 3.46
70 71 0.453390 GCCCTTGGCTCGAAATGAAG 59.547 55.000 0.00 0.00 46.69 3.02
71 72 2.566824 GCCCTTGGCTCGAAATGAA 58.433 52.632 0.00 0.00 46.69 2.57
72 73 4.319133 GCCCTTGGCTCGAAATGA 57.681 55.556 0.00 0.00 46.69 2.57
91 92 4.039357 CCTGACGACGGTCTGCGT 62.039 66.667 6.57 0.00 43.79 5.24
92 93 4.778415 CCCTGACGACGGTCTGCG 62.778 72.222 6.57 0.00 43.79 5.18
94 95 3.633094 CTGCCCTGACGACGGTCTG 62.633 68.421 6.57 2.73 43.79 3.51
95 96 3.374402 CTGCCCTGACGACGGTCT 61.374 66.667 6.57 0.00 43.79 3.85
96 97 3.681835 ACTGCCCTGACGACGGTC 61.682 66.667 0.00 0.00 43.71 4.79
97 98 3.991051 CACTGCCCTGACGACGGT 61.991 66.667 0.00 0.00 0.00 4.83
98 99 3.991051 ACACTGCCCTGACGACGG 61.991 66.667 0.00 0.00 0.00 4.79
99 100 2.734723 CACACTGCCCTGACGACG 60.735 66.667 0.00 0.00 0.00 5.12
100 101 2.357517 CCACACTGCCCTGACGAC 60.358 66.667 0.00 0.00 0.00 4.34
101 102 2.523168 TCCACACTGCCCTGACGA 60.523 61.111 0.00 0.00 0.00 4.20
102 103 2.047844 CTCCACACTGCCCTGACG 60.048 66.667 0.00 0.00 0.00 4.35
103 104 2.359230 GCTCCACACTGCCCTGAC 60.359 66.667 0.00 0.00 0.00 3.51
104 105 2.527624 AGCTCCACACTGCCCTGA 60.528 61.111 0.00 0.00 0.00 3.86
105 106 2.359602 CAGCTCCACACTGCCCTG 60.360 66.667 0.00 0.00 0.00 4.45
110 111 1.670406 GGTGAGCAGCTCCACACTG 60.670 63.158 20.16 0.00 38.22 3.66
111 112 1.486997 ATGGTGAGCAGCTCCACACT 61.487 55.000 20.16 6.39 42.51 3.55
112 113 1.002868 ATGGTGAGCAGCTCCACAC 60.003 57.895 20.16 11.77 42.51 3.82
113 114 1.297689 GATGGTGAGCAGCTCCACA 59.702 57.895 20.16 17.80 42.51 4.17
114 115 1.023513 GTGATGGTGAGCAGCTCCAC 61.024 60.000 20.16 15.26 42.51 4.02
115 116 1.297689 GTGATGGTGAGCAGCTCCA 59.702 57.895 20.16 12.62 43.73 3.86
116 117 0.321919 TTGTGATGGTGAGCAGCTCC 60.322 55.000 20.16 10.80 0.00 4.70
117 118 1.085091 CTTGTGATGGTGAGCAGCTC 58.915 55.000 16.21 16.21 0.00 4.09
118 119 0.322277 CCTTGTGATGGTGAGCAGCT 60.322 55.000 0.50 0.00 0.00 4.24
119 120 0.321919 TCCTTGTGATGGTGAGCAGC 60.322 55.000 0.00 0.00 0.00 5.25
120 121 2.189594 TTCCTTGTGATGGTGAGCAG 57.810 50.000 0.00 0.00 0.00 4.24
121 122 2.040145 TGATTCCTTGTGATGGTGAGCA 59.960 45.455 0.00 0.00 0.00 4.26
122 123 2.681848 CTGATTCCTTGTGATGGTGAGC 59.318 50.000 0.00 0.00 0.00 4.26
123 124 2.681848 GCTGATTCCTTGTGATGGTGAG 59.318 50.000 0.00 0.00 0.00 3.51
124 125 2.306805 AGCTGATTCCTTGTGATGGTGA 59.693 45.455 0.00 0.00 0.00 4.02
125 126 2.719739 AGCTGATTCCTTGTGATGGTG 58.280 47.619 0.00 0.00 0.00 4.17
126 127 3.087031 CAAGCTGATTCCTTGTGATGGT 58.913 45.455 0.00 0.00 35.97 3.55
127 128 2.426024 CCAAGCTGATTCCTTGTGATGG 59.574 50.000 0.00 0.00 38.36 3.51
128 129 2.159282 GCCAAGCTGATTCCTTGTGATG 60.159 50.000 0.00 0.00 38.36 3.07
129 130 2.097825 GCCAAGCTGATTCCTTGTGAT 58.902 47.619 0.00 0.00 38.36 3.06
130 131 1.538047 GCCAAGCTGATTCCTTGTGA 58.462 50.000 0.00 0.00 38.36 3.58
131 132 0.529378 GGCCAAGCTGATTCCTTGTG 59.471 55.000 0.00 0.00 38.36 3.33
132 133 0.962356 CGGCCAAGCTGATTCCTTGT 60.962 55.000 2.24 0.00 38.36 3.16
133 134 1.805254 CGGCCAAGCTGATTCCTTG 59.195 57.895 2.24 0.00 37.02 3.61
134 135 2.048603 GCGGCCAAGCTGATTCCTT 61.049 57.895 2.24 0.00 37.02 3.36
135 136 2.439156 GCGGCCAAGCTGATTCCT 60.439 61.111 2.24 0.00 37.02 3.36
136 137 3.880846 CGCGGCCAAGCTGATTCC 61.881 66.667 2.24 0.00 37.02 3.01
137 138 3.880846 CCGCGGCCAAGCTGATTC 61.881 66.667 14.67 0.00 37.02 2.52
138 139 4.408821 TCCGCGGCCAAGCTGATT 62.409 61.111 23.51 0.00 37.02 2.57
142 143 4.947147 TTTGTCCGCGGCCAAGCT 62.947 61.111 21.90 0.00 34.40 3.74
143 144 2.763627 ATTTTTGTCCGCGGCCAAGC 62.764 55.000 21.90 8.89 0.00 4.01
144 145 1.008361 CATTTTTGTCCGCGGCCAAG 61.008 55.000 21.90 6.60 0.00 3.61
145 146 1.006805 CATTTTTGTCCGCGGCCAA 60.007 52.632 19.11 19.11 0.00 4.52
146 147 0.889638 TACATTTTTGTCCGCGGCCA 60.890 50.000 23.51 14.56 0.00 5.36
147 148 0.455464 GTACATTTTTGTCCGCGGCC 60.455 55.000 23.51 10.90 0.00 6.13
148 149 0.519961 AGTACATTTTTGTCCGCGGC 59.480 50.000 23.51 16.75 0.00 6.53
149 150 2.997986 AGTAGTACATTTTTGTCCGCGG 59.002 45.455 22.12 22.12 0.00 6.46
150 151 4.860907 ACTAGTAGTACATTTTTGTCCGCG 59.139 41.667 0.00 0.00 0.00 6.46
151 152 6.366877 TGAACTAGTAGTACATTTTTGTCCGC 59.633 38.462 2.50 0.00 0.00 5.54
152 153 7.811236 TCTGAACTAGTAGTACATTTTTGTCCG 59.189 37.037 2.50 0.00 0.00 4.79
153 154 9.485206 TTCTGAACTAGTAGTACATTTTTGTCC 57.515 33.333 2.50 0.00 0.00 4.02
161 162 9.239551 TGTGTACATTCTGAACTAGTAGTACAT 57.760 33.333 2.50 0.00 39.09 2.29
162 163 8.625786 TGTGTACATTCTGAACTAGTAGTACA 57.374 34.615 2.50 4.92 37.03 2.90
163 164 7.697291 GCTGTGTACATTCTGAACTAGTAGTAC 59.303 40.741 2.50 2.51 33.67 2.73
164 165 7.413767 CGCTGTGTACATTCTGAACTAGTAGTA 60.414 40.741 2.50 0.00 0.00 1.82
165 166 6.622549 GCTGTGTACATTCTGAACTAGTAGT 58.377 40.000 0.00 0.00 0.00 2.73
166 167 5.739630 CGCTGTGTACATTCTGAACTAGTAG 59.260 44.000 0.00 0.00 0.00 2.57
167 168 5.413523 TCGCTGTGTACATTCTGAACTAGTA 59.586 40.000 0.00 0.00 0.00 1.82
168 169 4.217767 TCGCTGTGTACATTCTGAACTAGT 59.782 41.667 0.00 0.00 0.00 2.57
169 170 4.559251 GTCGCTGTGTACATTCTGAACTAG 59.441 45.833 0.00 0.00 0.00 2.57
170 171 4.022676 TGTCGCTGTGTACATTCTGAACTA 60.023 41.667 0.00 0.00 0.00 2.24
171 172 3.243737 TGTCGCTGTGTACATTCTGAACT 60.244 43.478 0.00 0.00 0.00 3.01
172 173 3.057019 TGTCGCTGTGTACATTCTGAAC 58.943 45.455 0.00 0.00 0.00 3.18
173 174 3.317150 CTGTCGCTGTGTACATTCTGAA 58.683 45.455 0.00 0.00 0.00 3.02
174 175 2.926586 GCTGTCGCTGTGTACATTCTGA 60.927 50.000 0.00 0.00 0.00 3.27
175 176 1.391485 GCTGTCGCTGTGTACATTCTG 59.609 52.381 0.00 0.00 0.00 3.02
176 177 1.673033 GGCTGTCGCTGTGTACATTCT 60.673 52.381 0.00 0.00 36.09 2.40
177 178 0.721718 GGCTGTCGCTGTGTACATTC 59.278 55.000 0.00 0.00 36.09 2.67
178 179 0.321671 AGGCTGTCGCTGTGTACATT 59.678 50.000 0.00 0.00 36.09 2.71
179 180 1.182667 TAGGCTGTCGCTGTGTACAT 58.817 50.000 0.00 0.00 36.09 2.29
180 181 1.135112 CATAGGCTGTCGCTGTGTACA 60.135 52.381 0.00 0.00 36.09 2.90
181 182 1.134367 TCATAGGCTGTCGCTGTGTAC 59.866 52.381 0.00 0.00 36.09 2.90
182 183 1.405463 CTCATAGGCTGTCGCTGTGTA 59.595 52.381 0.00 0.00 36.09 2.90
183 184 0.174389 CTCATAGGCTGTCGCTGTGT 59.826 55.000 0.00 0.00 36.09 3.72
184 185 1.150567 GCTCATAGGCTGTCGCTGTG 61.151 60.000 0.00 0.00 36.09 3.66
185 186 1.142748 GCTCATAGGCTGTCGCTGT 59.857 57.895 0.00 0.00 36.09 4.40
186 187 0.875040 CTGCTCATAGGCTGTCGCTG 60.875 60.000 0.00 0.00 36.09 5.18
187 188 1.326213 ACTGCTCATAGGCTGTCGCT 61.326 55.000 0.00 0.00 39.53 4.93
188 189 0.385751 TACTGCTCATAGGCTGTCGC 59.614 55.000 0.00 0.00 42.63 5.19
189 190 1.678627 AGTACTGCTCATAGGCTGTCG 59.321 52.381 0.00 0.00 42.63 4.35
190 191 3.810310 AAGTACTGCTCATAGGCTGTC 57.190 47.619 0.00 0.00 42.63 3.51
191 192 3.866651 CAAAGTACTGCTCATAGGCTGT 58.133 45.455 0.00 0.00 44.32 4.40
192 193 2.611292 GCAAAGTACTGCTCATAGGCTG 59.389 50.000 0.00 0.00 39.34 4.85
193 194 2.911484 GCAAAGTACTGCTCATAGGCT 58.089 47.619 0.00 0.00 39.34 4.58
202 203 3.181501 TGTTGTTGTCAGCAAAGTACTGC 60.182 43.478 3.44 0.00 42.97 4.40
203 204 4.332543 TCTGTTGTTGTCAGCAAAGTACTG 59.667 41.667 3.44 0.00 36.22 2.74
204 205 4.513442 TCTGTTGTTGTCAGCAAAGTACT 58.487 39.130 3.44 0.00 36.22 2.73
205 206 4.875544 TCTGTTGTTGTCAGCAAAGTAC 57.124 40.909 3.44 0.00 36.22 2.73
206 207 4.697828 TGTTCTGTTGTTGTCAGCAAAGTA 59.302 37.500 3.44 0.00 36.22 2.24
207 208 3.505680 TGTTCTGTTGTTGTCAGCAAAGT 59.494 39.130 3.44 0.00 36.22 2.66
208 209 4.095410 TGTTCTGTTGTTGTCAGCAAAG 57.905 40.909 3.44 4.86 36.22 2.77
209 210 4.484236 CTTGTTCTGTTGTTGTCAGCAAA 58.516 39.130 3.44 0.00 36.22 3.68
210 211 3.119531 CCTTGTTCTGTTGTTGTCAGCAA 60.120 43.478 0.00 0.00 34.62 3.91
211 212 2.423185 CCTTGTTCTGTTGTTGTCAGCA 59.577 45.455 0.00 0.00 33.95 4.41
212 213 2.423538 ACCTTGTTCTGTTGTTGTCAGC 59.576 45.455 0.00 0.00 33.48 4.26
213 214 5.049405 GGATACCTTGTTCTGTTGTTGTCAG 60.049 44.000 0.00 0.00 0.00 3.51
214 215 4.819630 GGATACCTTGTTCTGTTGTTGTCA 59.180 41.667 0.00 0.00 0.00 3.58
215 216 5.049405 CAGGATACCTTGTTCTGTTGTTGTC 60.049 44.000 0.00 0.00 37.17 3.18
216 217 4.821805 CAGGATACCTTGTTCTGTTGTTGT 59.178 41.667 0.00 0.00 37.17 3.32
217 218 4.320494 GCAGGATACCTTGTTCTGTTGTTG 60.320 45.833 0.00 0.00 37.17 3.33
218 219 3.821033 GCAGGATACCTTGTTCTGTTGTT 59.179 43.478 0.00 0.00 37.17 2.83
219 220 3.073062 AGCAGGATACCTTGTTCTGTTGT 59.927 43.478 0.00 0.00 37.17 3.32
220 221 3.679389 AGCAGGATACCTTGTTCTGTTG 58.321 45.455 0.00 0.00 37.17 3.33
221 222 5.246307 GTTAGCAGGATACCTTGTTCTGTT 58.754 41.667 0.00 0.00 37.17 3.16
222 223 4.323562 GGTTAGCAGGATACCTTGTTCTGT 60.324 45.833 0.00 0.00 37.17 3.41
223 224 4.192317 GGTTAGCAGGATACCTTGTTCTG 58.808 47.826 0.00 0.00 37.17 3.02
224 225 3.844211 TGGTTAGCAGGATACCTTGTTCT 59.156 43.478 0.00 0.00 33.05 3.01
225 226 4.192317 CTGGTTAGCAGGATACCTTGTTC 58.808 47.826 3.14 0.00 33.05 3.18
226 227 3.587506 ACTGGTTAGCAGGATACCTTGTT 59.412 43.478 16.05 0.00 33.05 2.83
227 228 3.182152 ACTGGTTAGCAGGATACCTTGT 58.818 45.455 16.05 0.00 33.05 3.16
228 229 3.914426 ACTGGTTAGCAGGATACCTTG 57.086 47.619 16.05 0.00 33.05 3.61
229 230 4.288626 TCAAACTGGTTAGCAGGATACCTT 59.711 41.667 16.05 0.00 33.05 3.50
230 231 3.844211 TCAAACTGGTTAGCAGGATACCT 59.156 43.478 16.05 0.00 33.05 3.08
231 232 4.192317 CTCAAACTGGTTAGCAGGATACC 58.808 47.826 16.05 0.00 37.17 2.73
232 233 3.623510 GCTCAAACTGGTTAGCAGGATAC 59.376 47.826 16.05 0.00 35.05 2.24
233 234 3.263170 TGCTCAAACTGGTTAGCAGGATA 59.737 43.478 16.05 0.00 39.92 2.59
234 235 2.040278 TGCTCAAACTGGTTAGCAGGAT 59.960 45.455 16.05 1.36 39.92 3.24
235 236 1.419762 TGCTCAAACTGGTTAGCAGGA 59.580 47.619 16.05 2.84 39.92 3.86
236 237 1.896220 TGCTCAAACTGGTTAGCAGG 58.104 50.000 16.05 0.00 39.92 4.85
239 240 1.745653 GGGATGCTCAAACTGGTTAGC 59.254 52.381 2.38 2.38 35.51 3.09
240 241 2.290896 TGGGGATGCTCAAACTGGTTAG 60.291 50.000 0.00 0.00 0.00 2.34
241 242 1.707989 TGGGGATGCTCAAACTGGTTA 59.292 47.619 0.00 0.00 0.00 2.85
242 243 0.482446 TGGGGATGCTCAAACTGGTT 59.518 50.000 0.00 0.00 0.00 3.67
243 244 0.482446 TTGGGGATGCTCAAACTGGT 59.518 50.000 0.00 0.00 0.00 4.00
244 245 1.753073 GATTGGGGATGCTCAAACTGG 59.247 52.381 2.71 0.00 0.00 4.00
245 246 1.402968 CGATTGGGGATGCTCAAACTG 59.597 52.381 2.71 0.00 0.00 3.16
246 247 1.281867 TCGATTGGGGATGCTCAAACT 59.718 47.619 2.71 0.00 0.00 2.66
247 248 1.750193 TCGATTGGGGATGCTCAAAC 58.250 50.000 2.71 0.00 0.00 2.93
248 249 2.689471 CAATCGATTGGGGATGCTCAAA 59.311 45.455 27.09 0.00 34.22 2.69
249 250 2.300433 CAATCGATTGGGGATGCTCAA 58.700 47.619 27.09 0.51 34.22 3.02
250 251 1.971481 CAATCGATTGGGGATGCTCA 58.029 50.000 27.09 0.00 34.22 4.26
251 252 0.595095 GCAATCGATTGGGGATGCTC 59.405 55.000 33.05 14.56 38.21 4.26
252 253 1.168407 CGCAATCGATTGGGGATGCT 61.168 55.000 35.20 1.06 44.18 3.79
253 254 1.283793 CGCAATCGATTGGGGATGC 59.716 57.895 35.20 22.66 44.18 3.91
254 255 1.168407 AGCGCAATCGATTGGGGATG 61.168 55.000 39.50 19.46 46.84 3.51
255 256 1.149174 AGCGCAATCGATTGGGGAT 59.851 52.632 39.50 24.78 46.84 3.85
256 257 1.819208 CAGCGCAATCGATTGGGGA 60.819 57.895 39.50 0.00 46.84 4.81
257 258 1.779025 CTCAGCGCAATCGATTGGGG 61.779 60.000 39.50 29.32 46.84 4.96
259 260 0.729116 AACTCAGCGCAATCGATTGG 59.271 50.000 33.05 24.64 38.21 3.16
260 261 1.394572 TGAACTCAGCGCAATCGATTG 59.605 47.619 29.67 29.67 40.66 2.67
261 262 1.394917 GTGAACTCAGCGCAATCGATT 59.605 47.619 11.47 4.39 38.10 3.34
262 263 1.002366 GTGAACTCAGCGCAATCGAT 58.998 50.000 11.47 0.00 38.10 3.59
263 264 0.038251 AGTGAACTCAGCGCAATCGA 60.038 50.000 11.47 0.00 38.10 3.59
264 265 0.094216 CAGTGAACTCAGCGCAATCG 59.906 55.000 11.47 0.00 39.07 3.34
265 266 1.392853 CTCAGTGAACTCAGCGCAATC 59.607 52.381 11.47 0.13 0.00 2.67
266 267 1.436600 CTCAGTGAACTCAGCGCAAT 58.563 50.000 11.47 0.00 0.00 3.56
267 268 0.601046 CCTCAGTGAACTCAGCGCAA 60.601 55.000 11.47 0.00 0.00 4.85
268 269 1.005748 CCTCAGTGAACTCAGCGCA 60.006 57.895 11.47 0.00 0.00 6.09
269 270 2.386660 GCCTCAGTGAACTCAGCGC 61.387 63.158 0.00 0.00 0.00 5.92
270 271 1.005748 TGCCTCAGTGAACTCAGCG 60.006 57.895 0.00 0.00 0.00 5.18
271 272 1.297456 GCTGCCTCAGTGAACTCAGC 61.297 60.000 18.84 18.84 39.82 4.26
272 273 0.673022 GGCTGCCTCAGTGAACTCAG 60.673 60.000 12.43 10.10 33.43 3.35
273 274 1.372683 GGCTGCCTCAGTGAACTCA 59.627 57.895 12.43 0.00 33.43 3.41
274 275 0.952984 GTGGCTGCCTCAGTGAACTC 60.953 60.000 21.03 0.00 33.43 3.01
275 276 1.072159 GTGGCTGCCTCAGTGAACT 59.928 57.895 21.03 0.00 33.43 3.01
276 277 1.227943 TGTGGCTGCCTCAGTGAAC 60.228 57.895 21.03 8.17 33.43 3.18
277 278 1.227943 GTGTGGCTGCCTCAGTGAA 60.228 57.895 22.58 0.00 33.43 3.18
278 279 2.104572 GAGTGTGGCTGCCTCAGTGA 62.105 60.000 29.75 2.82 31.80 3.41
279 280 1.670406 GAGTGTGGCTGCCTCAGTG 60.670 63.158 29.75 0.00 31.80 3.66
280 281 2.746359 GAGTGTGGCTGCCTCAGT 59.254 61.111 26.25 26.25 33.96 3.41
281 282 2.046507 GGAGTGTGGCTGCCTCAG 60.047 66.667 22.58 0.00 34.12 3.35
282 283 2.848679 TGGAGTGTGGCTGCCTCA 60.849 61.111 21.03 19.82 34.34 3.86
283 284 2.046507 CTGGAGTGTGGCTGCCTC 60.047 66.667 21.03 17.16 34.34 4.70
284 285 3.644606 CCTGGAGTGTGGCTGCCT 61.645 66.667 21.03 0.00 34.34 4.75
285 286 2.983725 AAACCTGGAGTGTGGCTGCC 62.984 60.000 12.87 12.87 34.34 4.85
286 287 1.529244 AAACCTGGAGTGTGGCTGC 60.529 57.895 0.00 0.00 35.97 5.25
287 288 1.799258 GCAAACCTGGAGTGTGGCTG 61.799 60.000 0.00 0.00 33.86 4.85
288 289 1.529244 GCAAACCTGGAGTGTGGCT 60.529 57.895 0.00 0.00 33.86 4.75
289 290 1.181098 ATGCAAACCTGGAGTGTGGC 61.181 55.000 0.00 0.00 33.86 5.01
290 291 0.883833 GATGCAAACCTGGAGTGTGG 59.116 55.000 0.00 0.00 33.86 4.17
291 292 0.883833 GGATGCAAACCTGGAGTGTG 59.116 55.000 0.00 0.00 36.70 3.82
292 293 0.478072 TGGATGCAAACCTGGAGTGT 59.522 50.000 0.00 0.00 0.00 3.55
293 294 1.843368 ATGGATGCAAACCTGGAGTG 58.157 50.000 0.00 0.00 0.00 3.51
294 295 2.564062 CAAATGGATGCAAACCTGGAGT 59.436 45.455 0.00 0.00 0.00 3.85
295 296 2.675889 GCAAATGGATGCAAACCTGGAG 60.676 50.000 0.00 0.00 45.70 3.86
296 297 1.275856 GCAAATGGATGCAAACCTGGA 59.724 47.619 0.00 0.00 45.70 3.86
297 298 1.729284 GCAAATGGATGCAAACCTGG 58.271 50.000 13.16 0.00 45.70 4.45
305 306 1.269621 GCAGATGGAGCAAATGGATGC 60.270 52.381 0.00 0.00 46.78 3.91
306 307 2.293677 GAGCAGATGGAGCAAATGGATG 59.706 50.000 0.00 0.00 0.00 3.51
307 308 2.092049 TGAGCAGATGGAGCAAATGGAT 60.092 45.455 0.00 0.00 0.00 3.41
308 309 1.282738 TGAGCAGATGGAGCAAATGGA 59.717 47.619 0.00 0.00 0.00 3.41
309 310 1.404391 GTGAGCAGATGGAGCAAATGG 59.596 52.381 0.00 0.00 0.00 3.16
310 311 2.089201 TGTGAGCAGATGGAGCAAATG 58.911 47.619 0.00 0.00 0.00 2.32
311 312 2.026542 TCTGTGAGCAGATGGAGCAAAT 60.027 45.455 0.00 0.00 45.94 2.32
312 313 1.348696 TCTGTGAGCAGATGGAGCAAA 59.651 47.619 0.00 0.00 45.94 3.68
313 314 0.978907 TCTGTGAGCAGATGGAGCAA 59.021 50.000 0.00 0.00 45.94 3.91
314 315 2.674958 TCTGTGAGCAGATGGAGCA 58.325 52.632 0.00 0.00 45.94 4.26
322 323 1.869767 GTTTGACAGGTCTGTGAGCAG 59.130 52.381 8.49 0.00 45.05 4.24
323 324 1.486310 AGTTTGACAGGTCTGTGAGCA 59.514 47.619 8.49 0.00 45.05 4.26
324 325 1.869767 CAGTTTGACAGGTCTGTGAGC 59.130 52.381 8.49 0.00 45.05 4.26
325 326 3.126831 GTCAGTTTGACAGGTCTGTGAG 58.873 50.000 8.49 0.00 46.22 3.51
326 327 3.179443 GTCAGTTTGACAGGTCTGTGA 57.821 47.619 8.49 0.00 46.22 3.58
340 341 1.474498 GGTGGACCGAAACTGTCAGTT 60.474 52.381 12.62 12.62 40.80 3.16
341 342 0.106149 GGTGGACCGAAACTGTCAGT 59.894 55.000 0.00 0.00 34.36 3.41
342 343 0.393077 AGGTGGACCGAAACTGTCAG 59.607 55.000 0.00 0.00 42.08 3.51
343 344 0.105964 CAGGTGGACCGAAACTGTCA 59.894 55.000 0.00 0.00 42.08 3.58
344 345 1.228657 GCAGGTGGACCGAAACTGTC 61.229 60.000 0.00 0.00 42.08 3.51
345 346 1.227853 GCAGGTGGACCGAAACTGT 60.228 57.895 0.00 0.00 42.08 3.55
346 347 1.227823 TGCAGGTGGACCGAAACTG 60.228 57.895 0.00 0.00 42.08 3.16
347 348 1.227853 GTGCAGGTGGACCGAAACT 60.228 57.895 0.00 0.00 42.08 2.66
348 349 0.889186 ATGTGCAGGTGGACCGAAAC 60.889 55.000 0.00 0.00 42.08 2.78
349 350 0.888736 CATGTGCAGGTGGACCGAAA 60.889 55.000 0.00 0.00 42.08 3.46
350 351 1.302431 CATGTGCAGGTGGACCGAA 60.302 57.895 0.00 0.00 42.08 4.30
351 352 2.347114 CATGTGCAGGTGGACCGA 59.653 61.111 0.00 0.00 42.08 4.69
352 353 2.747460 CCATGTGCAGGTGGACCG 60.747 66.667 11.06 0.00 42.08 4.79
353 354 3.064324 GCCATGTGCAGGTGGACC 61.064 66.667 18.93 1.25 40.77 4.46
362 363 2.947652 ACTATCTTGTCATGCCATGTGC 59.052 45.455 4.31 0.13 41.77 4.57
363 364 5.118286 TGTACTATCTTGTCATGCCATGTG 58.882 41.667 4.31 0.00 0.00 3.21
364 365 5.357742 TGTACTATCTTGTCATGCCATGT 57.642 39.130 4.31 0.00 0.00 3.21
365 366 6.147328 CAGATGTACTATCTTGTCATGCCATG 59.853 42.308 0.00 0.00 0.00 3.66
366 367 6.183361 ACAGATGTACTATCTTGTCATGCCAT 60.183 38.462 5.41 0.00 0.00 4.40
367 368 5.129320 ACAGATGTACTATCTTGTCATGCCA 59.871 40.000 5.41 0.00 0.00 4.92
368 369 5.605534 ACAGATGTACTATCTTGTCATGCC 58.394 41.667 5.41 0.00 0.00 4.40
369 370 8.706936 CATAACAGATGTACTATCTTGTCATGC 58.293 37.037 5.41 0.00 0.00 4.06
370 371 9.971922 TCATAACAGATGTACTATCTTGTCATG 57.028 33.333 5.41 8.56 0.00 3.07
384 385 9.725019 TTGTTCTTAGTGAATCATAACAGATGT 57.275 29.630 0.00 0.00 36.99 3.06
413 414 9.913310 TCCAACATACAGGAAATTTGTATATGA 57.087 29.630 0.00 0.00 39.16 2.15
417 418 9.253832 TCATTCCAACATACAGGAAATTTGTAT 57.746 29.630 0.00 0.00 46.17 2.29
418 419 8.519526 GTCATTCCAACATACAGGAAATTTGTA 58.480 33.333 0.00 0.00 46.17 2.41
419 420 7.378181 GTCATTCCAACATACAGGAAATTTGT 58.622 34.615 0.00 0.00 46.17 2.83
420 421 6.527722 CGTCATTCCAACATACAGGAAATTTG 59.472 38.462 0.00 0.00 46.17 2.32
421 422 6.432783 TCGTCATTCCAACATACAGGAAATTT 59.567 34.615 0.00 0.00 46.17 1.82
422 423 5.943416 TCGTCATTCCAACATACAGGAAATT 59.057 36.000 0.00 0.00 46.17 1.82
423 424 5.496556 TCGTCATTCCAACATACAGGAAAT 58.503 37.500 0.00 0.00 46.17 2.17
424 425 4.900684 TCGTCATTCCAACATACAGGAAA 58.099 39.130 0.00 0.00 46.17 3.13
426 427 4.441792 CATCGTCATTCCAACATACAGGA 58.558 43.478 0.00 0.00 0.00 3.86
427 428 3.561310 CCATCGTCATTCCAACATACAGG 59.439 47.826 0.00 0.00 0.00 4.00
428 429 4.034394 CACCATCGTCATTCCAACATACAG 59.966 45.833 0.00 0.00 0.00 2.74
429 430 3.938334 CACCATCGTCATTCCAACATACA 59.062 43.478 0.00 0.00 0.00 2.29
430 431 3.312421 CCACCATCGTCATTCCAACATAC 59.688 47.826 0.00 0.00 0.00 2.39
431 432 3.198853 TCCACCATCGTCATTCCAACATA 59.801 43.478 0.00 0.00 0.00 2.29
432 433 2.026356 TCCACCATCGTCATTCCAACAT 60.026 45.455 0.00 0.00 0.00 2.71
433 434 1.349357 TCCACCATCGTCATTCCAACA 59.651 47.619 0.00 0.00 0.00 3.33
434 435 2.009774 CTCCACCATCGTCATTCCAAC 58.990 52.381 0.00 0.00 0.00 3.77
435 436 1.905894 TCTCCACCATCGTCATTCCAA 59.094 47.619 0.00 0.00 0.00 3.53
436 437 1.567357 TCTCCACCATCGTCATTCCA 58.433 50.000 0.00 0.00 0.00 3.53
437 438 2.918712 ATCTCCACCATCGTCATTCC 57.081 50.000 0.00 0.00 0.00 3.01
438 439 3.006323 AGCTATCTCCACCATCGTCATTC 59.994 47.826 0.00 0.00 0.00 2.67
439 440 2.968574 AGCTATCTCCACCATCGTCATT 59.031 45.455 0.00 0.00 0.00 2.57
440 441 2.298446 CAGCTATCTCCACCATCGTCAT 59.702 50.000 0.00 0.00 0.00 3.06
441 442 1.683385 CAGCTATCTCCACCATCGTCA 59.317 52.381 0.00 0.00 0.00 4.35
442 443 1.000283 CCAGCTATCTCCACCATCGTC 60.000 57.143 0.00 0.00 0.00 4.20
443 444 1.043816 CCAGCTATCTCCACCATCGT 58.956 55.000 0.00 0.00 0.00 3.73
444 445 0.320247 GCCAGCTATCTCCACCATCG 60.320 60.000 0.00 0.00 0.00 3.84
445 446 0.761187 TGCCAGCTATCTCCACCATC 59.239 55.000 0.00 0.00 0.00 3.51
446 447 0.471617 GTGCCAGCTATCTCCACCAT 59.528 55.000 0.00 0.00 0.00 3.55
447 448 1.626356 GGTGCCAGCTATCTCCACCA 61.626 60.000 12.69 0.00 39.62 4.17
448 449 1.147153 GGTGCCAGCTATCTCCACC 59.853 63.158 0.00 0.00 35.74 4.61
449 450 1.227380 CGGTGCCAGCTATCTCCAC 60.227 63.158 0.00 0.00 0.00 4.02
450 451 2.434843 CCGGTGCCAGCTATCTCCA 61.435 63.158 0.00 0.00 0.00 3.86
451 452 2.423446 CCGGTGCCAGCTATCTCC 59.577 66.667 0.00 0.00 0.00 3.71
452 453 2.280457 GCCGGTGCCAGCTATCTC 60.280 66.667 1.90 0.00 0.00 2.75
481 482 4.680237 CTTCGTCAGTGCCCCGCA 62.680 66.667 0.00 0.00 35.60 5.69
482 483 4.373116 TCTTCGTCAGTGCCCCGC 62.373 66.667 0.00 0.00 0.00 6.13
483 484 2.432628 GTCTTCGTCAGTGCCCCG 60.433 66.667 0.00 0.00 0.00 5.73
484 485 1.079750 GAGTCTTCGTCAGTGCCCC 60.080 63.158 0.00 0.00 0.00 5.80
485 486 1.079750 GGAGTCTTCGTCAGTGCCC 60.080 63.158 0.00 0.00 0.00 5.36
486 487 0.318762 AAGGAGTCTTCGTCAGTGCC 59.681 55.000 0.00 0.00 0.00 5.01
487 488 1.704070 GAAGGAGTCTTCGTCAGTGC 58.296 55.000 0.00 0.00 39.82 4.40
495 496 4.447290 GCCAAGATAAGGAAGGAGTCTTC 58.553 47.826 0.00 0.00 46.47 2.87
496 497 3.201045 GGCCAAGATAAGGAAGGAGTCTT 59.799 47.826 0.00 0.00 35.62 3.01
497 498 2.774809 GGCCAAGATAAGGAAGGAGTCT 59.225 50.000 0.00 0.00 0.00 3.24
498 499 2.774809 AGGCCAAGATAAGGAAGGAGTC 59.225 50.000 5.01 0.00 0.00 3.36
499 500 2.852130 AGGCCAAGATAAGGAAGGAGT 58.148 47.619 5.01 0.00 0.00 3.85
500 501 3.941704 AAGGCCAAGATAAGGAAGGAG 57.058 47.619 5.01 0.00 0.00 3.69
501 502 3.053619 GGAAAGGCCAAGATAAGGAAGGA 60.054 47.826 5.01 0.00 36.34 3.36
502 503 3.053320 AGGAAAGGCCAAGATAAGGAAGG 60.053 47.826 5.01 0.00 40.02 3.46
503 504 4.242336 AGGAAAGGCCAAGATAAGGAAG 57.758 45.455 5.01 0.00 40.02 3.46
504 505 5.994416 ATAGGAAAGGCCAAGATAAGGAA 57.006 39.130 5.01 0.00 40.02 3.36
505 506 6.012508 CCATATAGGAAAGGCCAAGATAAGGA 60.013 42.308 5.01 0.00 41.22 3.36
506 507 6.183347 CCATATAGGAAAGGCCAAGATAAGG 58.817 44.000 5.01 0.00 41.22 2.69
507 508 6.656693 CACCATATAGGAAAGGCCAAGATAAG 59.343 42.308 5.01 0.00 41.22 1.73
508 509 6.467194 CCACCATATAGGAAAGGCCAAGATAA 60.467 42.308 5.01 0.00 41.22 1.75
509 510 5.014123 CCACCATATAGGAAAGGCCAAGATA 59.986 44.000 5.01 0.00 41.22 1.98
510 511 4.202609 CCACCATATAGGAAAGGCCAAGAT 60.203 45.833 5.01 0.00 41.22 2.40
511 512 3.138283 CCACCATATAGGAAAGGCCAAGA 59.862 47.826 5.01 0.00 41.22 3.02
512 513 3.138283 TCCACCATATAGGAAAGGCCAAG 59.862 47.826 5.01 0.00 41.22 3.61
513 514 3.127250 TCCACCATATAGGAAAGGCCAA 58.873 45.455 5.01 0.00 41.22 4.52
514 515 2.711009 CTCCACCATATAGGAAAGGCCA 59.289 50.000 5.01 0.00 41.22 5.36
515 516 2.711547 ACTCCACCATATAGGAAAGGCC 59.288 50.000 0.00 0.00 41.22 5.19
516 517 3.391296 TCACTCCACCATATAGGAAAGGC 59.609 47.826 0.00 0.00 41.22 4.35
517 518 5.545723 AGATCACTCCACCATATAGGAAAGG 59.454 44.000 0.00 0.00 41.22 3.11
518 519 6.678568 AGATCACTCCACCATATAGGAAAG 57.321 41.667 0.00 0.00 41.22 2.62
519 520 6.688922 GCAAGATCACTCCACCATATAGGAAA 60.689 42.308 0.00 0.00 41.22 3.13
520 521 5.221722 GCAAGATCACTCCACCATATAGGAA 60.222 44.000 0.00 0.00 41.22 3.36
521 522 4.284490 GCAAGATCACTCCACCATATAGGA 59.716 45.833 0.00 0.00 41.22 2.94
522 523 4.564406 GGCAAGATCACTCCACCATATAGG 60.564 50.000 0.00 0.00 45.67 2.57
523 524 4.573900 GGCAAGATCACTCCACCATATAG 58.426 47.826 0.00 0.00 0.00 1.31
524 525 3.006859 CGGCAAGATCACTCCACCATATA 59.993 47.826 0.00 0.00 0.00 0.86
525 526 2.224378 CGGCAAGATCACTCCACCATAT 60.224 50.000 0.00 0.00 0.00 1.78
526 527 1.138859 CGGCAAGATCACTCCACCATA 59.861 52.381 0.00 0.00 0.00 2.74
527 528 0.107508 CGGCAAGATCACTCCACCAT 60.108 55.000 0.00 0.00 0.00 3.55
528 529 1.296392 CGGCAAGATCACTCCACCA 59.704 57.895 0.00 0.00 0.00 4.17
529 530 2.109126 GCGGCAAGATCACTCCACC 61.109 63.158 0.00 0.00 0.00 4.61
530 531 2.456119 CGCGGCAAGATCACTCCAC 61.456 63.158 0.00 0.00 0.00 4.02
531 532 2.125552 CGCGGCAAGATCACTCCA 60.126 61.111 0.00 0.00 0.00 3.86
532 533 2.892425 CCGCGGCAAGATCACTCC 60.892 66.667 14.67 0.00 0.00 3.85
533 534 3.567797 GCCGCGGCAAGATCACTC 61.568 66.667 43.55 11.09 41.49 3.51
544 545 3.673956 TACACCTCCATTGCCGCGG 62.674 63.158 24.05 24.05 0.00 6.46
545 546 2.125310 TACACCTCCATTGCCGCG 60.125 61.111 0.00 0.00 0.00 6.46
546 547 2.472909 GCTACACCTCCATTGCCGC 61.473 63.158 0.00 0.00 0.00 6.53
547 548 2.173669 CGCTACACCTCCATTGCCG 61.174 63.158 0.00 0.00 0.00 5.69
548 549 1.819632 CCGCTACACCTCCATTGCC 60.820 63.158 0.00 0.00 0.00 4.52
549 550 0.676782 AACCGCTACACCTCCATTGC 60.677 55.000 0.00 0.00 0.00 3.56
550 551 1.338674 TGAACCGCTACACCTCCATTG 60.339 52.381 0.00 0.00 0.00 2.82
551 552 0.981183 TGAACCGCTACACCTCCATT 59.019 50.000 0.00 0.00 0.00 3.16
552 553 1.134401 CATGAACCGCTACACCTCCAT 60.134 52.381 0.00 0.00 0.00 3.41
553 554 0.249120 CATGAACCGCTACACCTCCA 59.751 55.000 0.00 0.00 0.00 3.86
554 555 0.462047 CCATGAACCGCTACACCTCC 60.462 60.000 0.00 0.00 0.00 4.30
555 556 0.249398 ACCATGAACCGCTACACCTC 59.751 55.000 0.00 0.00 0.00 3.85
556 557 1.480954 CTACCATGAACCGCTACACCT 59.519 52.381 0.00 0.00 0.00 4.00
557 558 1.479323 TCTACCATGAACCGCTACACC 59.521 52.381 0.00 0.00 0.00 4.16
558 559 2.928116 GTTCTACCATGAACCGCTACAC 59.072 50.000 0.00 0.00 40.10 2.90
559 560 2.416296 CGTTCTACCATGAACCGCTACA 60.416 50.000 0.00 0.00 42.22 2.74
560 561 2.190981 CGTTCTACCATGAACCGCTAC 58.809 52.381 0.00 0.00 42.22 3.58
561 562 1.820519 ACGTTCTACCATGAACCGCTA 59.179 47.619 0.00 0.00 42.22 4.26
562 563 0.606604 ACGTTCTACCATGAACCGCT 59.393 50.000 0.00 0.00 42.22 5.52
563 564 0.719465 CACGTTCTACCATGAACCGC 59.281 55.000 0.00 0.00 42.22 5.68
564 565 1.724623 CACACGTTCTACCATGAACCG 59.275 52.381 0.00 0.00 42.22 4.44
565 566 2.073816 CCACACGTTCTACCATGAACC 58.926 52.381 0.00 0.00 42.22 3.62
566 567 2.073816 CCCACACGTTCTACCATGAAC 58.926 52.381 0.00 0.00 41.91 3.18
567 568 1.609580 GCCCACACGTTCTACCATGAA 60.610 52.381 0.00 0.00 0.00 2.57
568 569 0.036765 GCCCACACGTTCTACCATGA 60.037 55.000 0.00 0.00 0.00 3.07
569 570 1.358725 CGCCCACACGTTCTACCATG 61.359 60.000 0.00 0.00 0.00 3.66
570 571 1.079405 CGCCCACACGTTCTACCAT 60.079 57.895 0.00 0.00 0.00 3.55
571 572 1.746322 TTCGCCCACACGTTCTACCA 61.746 55.000 0.00 0.00 0.00 3.25
572 573 0.390735 ATTCGCCCACACGTTCTACC 60.391 55.000 0.00 0.00 0.00 3.18
573 574 1.127951 CAATTCGCCCACACGTTCTAC 59.872 52.381 0.00 0.00 0.00 2.59
574 575 1.001068 TCAATTCGCCCACACGTTCTA 59.999 47.619 0.00 0.00 0.00 2.10
575 576 0.250124 TCAATTCGCCCACACGTTCT 60.250 50.000 0.00 0.00 0.00 3.01
576 577 0.589223 TTCAATTCGCCCACACGTTC 59.411 50.000 0.00 0.00 0.00 3.95
577 578 0.309612 GTTCAATTCGCCCACACGTT 59.690 50.000 0.00 0.00 0.00 3.99
578 579 0.816018 TGTTCAATTCGCCCACACGT 60.816 50.000 0.00 0.00 0.00 4.49
579 580 0.521291 ATGTTCAATTCGCCCACACG 59.479 50.000 0.00 0.00 0.00 4.49
580 581 5.493133 TTATATGTTCAATTCGCCCACAC 57.507 39.130 0.00 0.00 0.00 3.82
581 582 5.163602 GGTTTATATGTTCAATTCGCCCACA 60.164 40.000 0.00 0.00 0.00 4.17
582 583 5.067283 AGGTTTATATGTTCAATTCGCCCAC 59.933 40.000 0.00 0.00 0.00 4.61
583 584 5.197451 AGGTTTATATGTTCAATTCGCCCA 58.803 37.500 0.00 0.00 0.00 5.36
584 585 5.767816 AGGTTTATATGTTCAATTCGCCC 57.232 39.130 0.00 0.00 0.00 6.13
585 586 5.458779 GCAAGGTTTATATGTTCAATTCGCC 59.541 40.000 0.00 0.00 0.00 5.54
586 587 6.265577 AGCAAGGTTTATATGTTCAATTCGC 58.734 36.000 0.00 0.00 0.00 4.70
587 588 8.826710 TCTAGCAAGGTTTATATGTTCAATTCG 58.173 33.333 0.00 0.00 0.00 3.34
672 673 5.607119 ACATACAGAAAACTTTACAGCGG 57.393 39.130 0.00 0.00 0.00 5.52
808 809 2.726691 CCCGAACTTACGCACGCAG 61.727 63.158 0.00 0.00 0.00 5.18
968 987 2.103143 CGTGCTAGCGTGGAGAGG 59.897 66.667 10.77 0.00 0.00 3.69
1193 1257 5.511386 AAACAGGAGAGATTGAAGGATGT 57.489 39.130 0.00 0.00 0.00 3.06
1195 1259 5.190528 TGCTAAACAGGAGAGATTGAAGGAT 59.809 40.000 0.00 0.00 0.00 3.24
1240 1304 4.715130 TCCCGTGGCCTGCCTAGT 62.715 66.667 9.97 0.00 36.94 2.57
1358 1587 1.614711 GGCACCATGGGAAGATGGA 59.385 57.895 18.09 0.00 45.24 3.41
1582 1814 7.510549 TCAAAACTTAACTGAATCAAGAGGG 57.489 36.000 0.00 0.00 0.00 4.30
2007 2240 6.255670 GTCATGTGCTAAGATAAACATCGACA 59.744 38.462 0.00 0.00 34.64 4.35
2104 2343 2.634815 TTTTGTACCCCGCAACAGTA 57.365 45.000 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.