Multiple sequence alignment - TraesCS2D01G533800
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS2D01G533800
chr2D
100.000
2267
0
0
1
2267
618059727
618061993
0.000000e+00
4187.0
1
TraesCS2D01G533800
chr2D
82.353
544
60
16
797
1305
618003882
618004424
7.430000e-120
440.0
2
TraesCS2D01G533800
chr2D
82.096
458
73
8
1
452
617207486
617207032
1.270000e-102
383.0
3
TraesCS2D01G533800
chr2D
88.608
316
27
7
990
1299
618132560
618132872
2.130000e-100
375.0
4
TraesCS2D01G533800
chr2D
84.861
251
29
5
1183
1430
588529930
588530174
6.250000e-61
244.0
5
TraesCS2D01G533800
chr2D
85.185
108
9
5
1561
1662
618128321
618128427
1.110000e-18
104.0
6
TraesCS2D01G533800
chr2A
85.644
1226
109
40
588
1780
748557911
748559102
0.000000e+00
1227.0
7
TraesCS2D01G533800
chr2A
81.947
986
105
27
762
1708
748534771
748535722
0.000000e+00
767.0
8
TraesCS2D01G533800
chr2A
89.525
611
49
6
1
596
748556090
748556700
0.000000e+00
760.0
9
TraesCS2D01G533800
chr2A
84.530
627
63
19
690
1305
748697831
748698434
6.970000e-165
590.0
10
TraesCS2D01G533800
chr2A
80.411
730
80
26
790
1467
748542096
748542814
4.350000e-137
497.0
11
TraesCS2D01G533800
chr2A
82.900
538
63
8
766
1277
748550373
748550907
7.380000e-125
457.0
12
TraesCS2D01G533800
chr2A
85.753
365
32
6
1359
1708
748529615
748529974
3.560000e-98
368.0
13
TraesCS2D01G533800
chr2A
85.477
241
29
5
1194
1430
723125025
723125263
1.740000e-61
246.0
14
TraesCS2D01G533800
chr2A
93.333
120
8
0
2068
2187
748559856
748559975
6.430000e-41
178.0
15
TraesCS2D01G533800
chr2A
86.667
150
17
2
2002
2148
748529319
748529468
1.800000e-36
163.0
16
TraesCS2D01G533800
chr2A
90.909
99
8
1
1958
2055
748685075
748685173
5.080000e-27
132.0
17
TraesCS2D01G533800
chr2B
81.502
1065
115
48
723
1730
754004365
754005404
0.000000e+00
800.0
18
TraesCS2D01G533800
chr2B
79.634
928
103
32
724
1581
754010686
754011597
2.510000e-164
588.0
19
TraesCS2D01G533800
chr2B
79.735
755
94
29
593
1305
754015546
754016283
2.020000e-135
492.0
20
TraesCS2D01G533800
chr2B
84.392
378
43
9
1354
1723
754014147
754014516
7.700000e-95
357.0
21
TraesCS2D01G533800
chr2B
81.910
398
55
13
1
396
508415991
508416373
1.010000e-83
320.0
22
TraesCS2D01G533800
chr2B
89.655
232
21
3
564
792
753995493
753995724
2.200000e-75
292.0
23
TraesCS2D01G533800
chr2B
80.051
396
67
10
161
547
415387790
415387398
1.330000e-72
283.0
24
TraesCS2D01G533800
chr2B
86.831
243
27
4
1191
1430
754550503
754550743
1.330000e-67
267.0
25
TraesCS2D01G533800
chr2B
87.342
158
14
2
1720
1872
754011704
754011860
2.310000e-40
176.0
26
TraesCS2D01G533800
chr2B
93.548
62
2
2
2191
2250
128340114
128340175
8.620000e-15
91.6
27
TraesCS2D01G533800
chr2B
96.875
32
1
0
1723
1754
754343469
754343500
1.000000e-03
54.7
28
TraesCS2D01G533800
chr5D
81.611
571
70
17
1
565
109579590
109580131
7.430000e-120
440.0
29
TraesCS2D01G533800
chr5D
77.005
561
95
21
9
547
520288879
520288331
7.920000e-75
291.0
30
TraesCS2D01G533800
chr5D
93.548
62
2
2
2192
2251
559603544
559603605
8.620000e-15
91.6
31
TraesCS2D01G533800
chr6D
81.410
468
65
20
1
461
437400906
437401358
1.660000e-96
363.0
32
TraesCS2D01G533800
chr3A
78.369
564
96
16
1
547
27035881
27036435
2.160000e-90
342.0
33
TraesCS2D01G533800
chr3D
83.747
363
55
4
1
361
488276633
488276993
7.760000e-90
340.0
34
TraesCS2D01G533800
chr3D
78.926
484
87
10
73
549
416913010
416912535
4.700000e-82
315.0
35
TraesCS2D01G533800
chr3D
96.610
59
2
0
2192
2250
54640650
54640708
5.150000e-17
99.0
36
TraesCS2D01G533800
chr4D
77.127
529
90
20
1
526
84259314
84258814
6.170000e-71
278.0
37
TraesCS2D01G533800
chr4D
95.161
62
2
1
2191
2252
196875344
196875404
1.850000e-16
97.1
38
TraesCS2D01G533800
chr3B
84.337
249
30
6
1188
1430
43733482
43733727
3.760000e-58
235.0
39
TraesCS2D01G533800
chr7B
96.774
62
2
0
2192
2253
697395609
697395548
1.110000e-18
104.0
40
TraesCS2D01G533800
chr7B
98.246
57
1
0
2192
2248
697398056
697398000
1.430000e-17
100.0
41
TraesCS2D01G533800
chr7B
95.161
62
3
0
2192
2253
684983700
684983639
5.150000e-17
99.0
42
TraesCS2D01G533800
chr7B
96.552
58
2
0
2192
2249
666013242
666013299
1.850000e-16
97.1
43
TraesCS2D01G533800
chr7A
93.651
63
3
1
2192
2254
20204977
20205038
2.400000e-15
93.5
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS2D01G533800
chr2D
618059727
618061993
2266
False
4187.000000
4187
100.000000
1
2267
1
chr2D.!!$F3
2266
1
TraesCS2D01G533800
chr2D
618003882
618004424
542
False
440.000000
440
82.353000
797
1305
1
chr2D.!!$F2
508
2
TraesCS2D01G533800
chr2A
748534771
748535722
951
False
767.000000
767
81.947000
762
1708
1
chr2A.!!$F2
946
3
TraesCS2D01G533800
chr2A
748556090
748559975
3885
False
721.666667
1227
89.500667
1
2187
3
chr2A.!!$F8
2186
4
TraesCS2D01G533800
chr2A
748697831
748698434
603
False
590.000000
590
84.530000
690
1305
1
chr2A.!!$F6
615
5
TraesCS2D01G533800
chr2A
748542096
748542814
718
False
497.000000
497
80.411000
790
1467
1
chr2A.!!$F3
677
6
TraesCS2D01G533800
chr2A
748550373
748550907
534
False
457.000000
457
82.900000
766
1277
1
chr2A.!!$F4
511
7
TraesCS2D01G533800
chr2A
748529319
748529974
655
False
265.500000
368
86.210000
1359
2148
2
chr2A.!!$F7
789
8
TraesCS2D01G533800
chr2B
754004365
754005404
1039
False
800.000000
800
81.502000
723
1730
1
chr2B.!!$F4
1007
9
TraesCS2D01G533800
chr2B
754010686
754016283
5597
False
403.250000
588
82.775750
593
1872
4
chr2B.!!$F7
1279
10
TraesCS2D01G533800
chr5D
109579590
109580131
541
False
440.000000
440
81.611000
1
565
1
chr5D.!!$F1
564
11
TraesCS2D01G533800
chr5D
520288331
520288879
548
True
291.000000
291
77.005000
9
547
1
chr5D.!!$R1
538
12
TraesCS2D01G533800
chr3A
27035881
27036435
554
False
342.000000
342
78.369000
1
547
1
chr3A.!!$F1
546
13
TraesCS2D01G533800
chr4D
84258814
84259314
500
True
278.000000
278
77.127000
1
526
1
chr4D.!!$R1
525
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
847
2144
0.339162
TATAACCCCGTCCCACTCCA
59.661
55.0
0.0
0.0
0.0
3.86
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1870
6189
0.176449
CATGACCGTCTGCTCATCCA
59.824
55.0
0.0
0.0
0.0
3.41
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
170
200
3.479203
CCATGGCGGTGGCTAGGA
61.479
66.667
0.00
0.00
39.81
2.94
432
491
3.908213
ACGCATTTCAGCCGTAATTTTT
58.092
36.364
0.00
0.00
0.00
1.94
535
594
1.376295
GGCCCAAACGTACGGTGAT
60.376
57.895
21.06
0.00
0.00
3.06
550
613
2.643551
GGTGATGGACGAAATGGATGT
58.356
47.619
0.00
0.00
0.00
3.06
572
635
2.548920
GCTGGAGTTGCTCTTACACACT
60.549
50.000
0.00
0.00
0.00
3.55
577
640
2.965831
AGTTGCTCTTACACACTGAGGA
59.034
45.455
0.00
0.00
0.00
3.71
624
1906
4.790765
TGAAGTATCTCATATCTGCGGG
57.209
45.455
0.00
0.00
0.00
6.13
625
1907
4.407365
TGAAGTATCTCATATCTGCGGGA
58.593
43.478
0.00
0.00
0.00
5.14
696
1978
4.760047
CAAGACGGGGCGAGGTGG
62.760
72.222
0.00
0.00
0.00
4.61
758
2043
2.889578
CGCAAGCAAGCAAATGTGT
58.110
47.368
1.32
0.00
0.00
3.72
761
2046
2.595536
CGCAAGCAAGCAAATGTGTATC
59.404
45.455
1.32
0.00
0.00
2.24
785
2080
1.304134
GCACCCGGTTTCCTGGAAT
60.304
57.895
10.45
0.00
32.04
3.01
847
2144
0.339162
TATAACCCCGTCCCACTCCA
59.661
55.000
0.00
0.00
0.00
3.86
937
2235
1.940613
GTTCAACTTCGCAAGTCCACT
59.059
47.619
2.65
0.00
41.91
4.00
954
2254
4.160329
TCCACTAGGATCACAAGTCAGTT
58.840
43.478
0.00
0.00
39.61
3.16
987
2288
1.941812
CGCGGCAAGAACAAGAAGT
59.058
52.632
0.00
0.00
0.00
3.01
989
2290
1.732259
CGCGGCAAGAACAAGAAGTAT
59.268
47.619
0.00
0.00
0.00
2.12
997
2298
6.536941
GGCAAGAACAAGAAGTATAGGAGAAG
59.463
42.308
0.00
0.00
0.00
2.85
999
2300
6.228616
AGAACAAGAAGTATAGGAGAAGCC
57.771
41.667
0.00
0.00
0.00
4.35
1068
2369
2.035442
GGTGGAAGCGCTCAAGGAC
61.035
63.158
12.06
3.26
0.00
3.85
1233
2534
1.437986
CGAGGAGGGGCTAAGAACG
59.562
63.158
0.00
0.00
0.00
3.95
1236
2537
1.221021
GGAGGGGCTAAGAACGGTG
59.779
63.158
0.00
0.00
0.00
4.94
1277
2578
4.165565
GGGCCCAAATTAGGAGTACTAGTT
59.834
45.833
19.95
0.00
33.52
2.24
1286
2587
3.991683
AGGAGTACTAGTTGGTTAGGGG
58.008
50.000
0.00
0.00
0.00
4.79
1304
2605
0.865639
GGTGTTGTGTTCGTTGCAGC
60.866
55.000
0.00
0.00
0.00
5.25
1325
2626
4.762809
GCTTGTGCTTATACTTATGCGAC
58.237
43.478
0.00
0.00
36.03
5.19
1326
2627
4.270084
GCTTGTGCTTATACTTATGCGACA
59.730
41.667
0.00
0.00
36.03
4.35
1327
2628
5.220586
GCTTGTGCTTATACTTATGCGACAA
60.221
40.000
0.00
0.00
33.65
3.18
1330
2631
4.025145
GTGCTTATACTTATGCGACAACCC
60.025
45.833
0.00
0.00
32.56
4.11
1333
2634
3.857157
ATACTTATGCGACAACCCCAT
57.143
42.857
0.00
0.00
0.00
4.00
1335
2636
1.280710
ACTTATGCGACAACCCCATGA
59.719
47.619
0.00
0.00
0.00
3.07
1337
2638
0.107410
TATGCGACAACCCCATGACC
60.107
55.000
0.00
0.00
0.00
4.02
1341
2642
0.887387
CGACAACCCCATGACCGTTT
60.887
55.000
0.00
0.00
0.00
3.60
1342
2643
0.596082
GACAACCCCATGACCGTTTG
59.404
55.000
0.00
0.00
0.00
2.93
1343
2644
0.106419
ACAACCCCATGACCGTTTGT
60.106
50.000
0.00
0.00
0.00
2.83
1344
2645
1.143277
ACAACCCCATGACCGTTTGTA
59.857
47.619
0.00
0.00
0.00
2.41
1345
2646
2.231529
CAACCCCATGACCGTTTGTAA
58.768
47.619
0.00
0.00
0.00
2.41
1346
2647
2.623889
CAACCCCATGACCGTTTGTAAA
59.376
45.455
0.00
0.00
0.00
2.01
1347
2648
3.163616
ACCCCATGACCGTTTGTAAAT
57.836
42.857
0.00
0.00
0.00
1.40
1348
2649
4.304048
ACCCCATGACCGTTTGTAAATA
57.696
40.909
0.00
0.00
0.00
1.40
1351
2652
4.095782
CCCCATGACCGTTTGTAAATACAG
59.904
45.833
0.00
0.00
37.52
2.74
1352
2653
4.438200
CCCATGACCGTTTGTAAATACAGC
60.438
45.833
0.00
0.00
37.52
4.40
1355
2656
3.184783
TGACCGTTTGTAAATACAGCACG
59.815
43.478
15.24
15.24
40.99
5.34
1356
2657
3.391965
ACCGTTTGTAAATACAGCACGA
58.608
40.909
20.30
0.00
42.49
4.35
1357
2658
3.998341
ACCGTTTGTAAATACAGCACGAT
59.002
39.130
20.30
8.08
42.49
3.73
1358
2659
4.142988
ACCGTTTGTAAATACAGCACGATG
60.143
41.667
20.30
11.92
42.49
3.84
1359
2660
4.092237
CCGTTTGTAAATACAGCACGATGA
59.908
41.667
20.30
0.00
42.49
2.92
1360
2661
5.220586
CCGTTTGTAAATACAGCACGATGAT
60.221
40.000
20.30
0.00
42.49
2.45
1362
2663
6.454981
CGTTTGTAAATACAGCACGATGATGA
60.455
38.462
16.40
0.00
42.49
2.92
1413
2806
2.969821
TTACCCTCCTTGTGCATGTT
57.030
45.000
0.00
0.00
0.00
2.71
1449
2842
5.871465
TTTTTGAAAGGCCAAAAGTTGAC
57.129
34.783
5.01
0.00
43.99
3.18
1456
2849
1.923864
GGCCAAAAGTTGACGTTTGTG
59.076
47.619
17.09
11.55
41.52
3.33
1491
2914
5.730550
TCTACAAAACGAGGCATACAGAAT
58.269
37.500
0.00
0.00
0.00
2.40
1501
2931
5.451937
CGAGGCATACAGAATACAGAGGAAA
60.452
44.000
0.00
0.00
0.00
3.13
1509
2939
6.479884
ACAGAATACAGAGGAAATTCAGCTT
58.520
36.000
0.00
0.00
33.06
3.74
1536
2966
2.154462
CCGAACAGCCAAACTCTGAAT
58.846
47.619
0.00
0.00
35.61
2.57
1542
2972
3.507622
ACAGCCAAACTCTGAATAAAGGC
59.492
43.478
0.00
0.00
41.08
4.35
1543
2973
3.092301
AGCCAAACTCTGAATAAAGGCC
58.908
45.455
0.00
0.00
41.69
5.19
1544
2974
2.159379
GCCAAACTCTGAATAAAGGCCG
60.159
50.000
0.00
0.00
34.94
6.13
1545
2975
2.423538
CCAAACTCTGAATAAAGGCCGG
59.576
50.000
0.00
0.00
0.00
6.13
1558
5773
3.007323
GCCGGGTAGAACAGGGGT
61.007
66.667
2.18
0.00
0.00
4.95
1560
5775
2.666098
CCGGGTAGAACAGGGGTGG
61.666
68.421
0.00
0.00
0.00
4.61
1562
5777
1.486145
CGGGTAGAACAGGGGTGGTT
61.486
60.000
0.00
0.00
0.00
3.67
1633
5854
1.345089
TCAAATTCGAACACCTCCGGA
59.655
47.619
2.93
2.93
0.00
5.14
1644
5865
2.496341
CTCCGGATCGCTGCAAGA
59.504
61.111
3.57
0.00
34.07
3.02
1654
5875
2.743928
CTGCAAGAGGTGGCCGTC
60.744
66.667
0.00
0.00
34.07
4.79
1664
5885
2.103263
GAGGTGGCCGTCAGAGATTATT
59.897
50.000
0.00
0.00
0.00
1.40
1725
5985
3.876589
TTGTGGCTCGAGGCGAACC
62.877
63.158
30.84
19.47
41.78
3.62
1762
6022
1.004080
TCTGCAGTCTGCTCAAGGC
60.004
57.895
24.76
0.00
45.31
4.35
1780
6040
7.569591
GCTCAAGGCACACGATATCTAATTAAC
60.570
40.741
0.34
0.00
41.35
2.01
1781
6041
7.497595
TCAAGGCACACGATATCTAATTAACT
58.502
34.615
0.34
0.00
0.00
2.24
1782
6042
8.635328
TCAAGGCACACGATATCTAATTAACTA
58.365
33.333
0.34
0.00
0.00
2.24
1783
6043
9.256477
CAAGGCACACGATATCTAATTAACTAA
57.744
33.333
0.34
0.00
0.00
2.24
1785
6045
9.257651
AGGCACACGATATCTAATTAACTAAAC
57.742
33.333
0.34
0.00
0.00
2.01
1786
6046
8.212495
GGCACACGATATCTAATTAACTAAACG
58.788
37.037
0.34
0.00
0.00
3.60
1787
6047
8.749499
GCACACGATATCTAATTAACTAAACGT
58.251
33.333
0.34
0.00
0.00
3.99
1829
6148
7.297936
TGAGACACACATAGTCCTCTTTTTA
57.702
36.000
0.00
0.00
36.68
1.52
1830
6149
7.378966
TGAGACACACATAGTCCTCTTTTTAG
58.621
38.462
0.00
0.00
36.68
1.85
1836
6155
9.706691
CACACATAGTCCTCTTTTTAGTTAGAA
57.293
33.333
0.00
0.00
0.00
2.10
1837
6156
9.930693
ACACATAGTCCTCTTTTTAGTTAGAAG
57.069
33.333
0.00
0.00
0.00
2.85
1849
6168
1.080637
TTAGAAGCGCGCCGTGTAA
60.081
52.632
30.33
21.37
0.00
2.41
1865
6184
4.911754
GTGTAAAATATGCGCACGAATG
57.088
40.909
14.90
0.00
0.00
2.67
1878
6197
2.523015
CACGAATGCTTTTGGATGAGC
58.477
47.619
4.71
0.00
39.33
4.26
1883
6202
1.159285
TGCTTTTGGATGAGCAGACG
58.841
50.000
0.00
0.00
43.46
4.18
1884
6203
0.449388
GCTTTTGGATGAGCAGACGG
59.551
55.000
0.00
0.00
38.73
4.79
1896
6215
1.016130
GCAGACGGTCATGGTGTCAG
61.016
60.000
11.27
7.82
35.09
3.51
1905
6224
1.537889
ATGGTGTCAGGACCCGGAA
60.538
57.895
0.73
0.00
34.79
4.30
1926
6245
3.337619
CAGACACTGCACAGCACC
58.662
61.111
0.00
0.00
33.79
5.01
1928
6247
3.349006
GACACTGCACAGCACCGG
61.349
66.667
0.00
0.00
33.79
5.28
1969
7170
1.202734
AGCAAAGTGAGCTCTGCTGAA
60.203
47.619
23.09
0.00
43.34
3.02
1986
7187
4.065321
CTGAAAGCACCAGGTATCCTAG
57.935
50.000
0.00
0.00
29.64
3.02
2000
7201
2.106683
CCTAGAAAACCAGCGCCCG
61.107
63.158
2.29
0.00
0.00
6.13
2002
7203
3.538785
TAGAAAACCAGCGCCCGCA
62.539
57.895
15.50
0.00
44.88
5.69
2019
7220
2.985847
AGCCGCCTGTTTTGCTCC
60.986
61.111
0.00
0.00
0.00
4.70
2024
7225
1.674322
GCCTGTTTTGCTCCGGCTA
60.674
57.895
0.00
0.00
37.76
3.93
2027
7228
1.678728
CCTGTTTTGCTCCGGCTATCA
60.679
52.381
0.00
0.00
39.59
2.15
2029
7230
0.373716
GTTTTGCTCCGGCTATCACG
59.626
55.000
0.00
0.00
39.59
4.35
2041
7242
3.488047
CGGCTATCACGTATATAACCCCG
60.488
52.174
0.00
0.00
0.00
5.73
2042
7243
3.445096
GGCTATCACGTATATAACCCCGT
59.555
47.826
0.00
0.00
0.00
5.28
2044
7245
4.439289
GCTATCACGTATATAACCCCGTCC
60.439
50.000
0.00
0.00
0.00
4.79
2046
7247
1.962807
CACGTATATAACCCCGTCCCA
59.037
52.381
0.00
0.00
0.00
4.37
2047
7248
1.963515
ACGTATATAACCCCGTCCCAC
59.036
52.381
0.00
0.00
0.00
4.61
2048
7249
2.242043
CGTATATAACCCCGTCCCACT
58.758
52.381
0.00
0.00
0.00
4.00
2050
7251
1.725803
ATATAACCCCGTCCCACTCC
58.274
55.000
0.00
0.00
0.00
3.85
2052
7253
2.480255
ATAACCCCGTCCCACTCCCA
62.480
60.000
0.00
0.00
0.00
4.37
2056
7257
2.526046
CCCGTCCCACTCCCACTTT
61.526
63.158
0.00
0.00
0.00
2.66
2057
7258
1.454539
CCGTCCCACTCCCACTTTT
59.545
57.895
0.00
0.00
0.00
2.27
2058
7259
0.179001
CCGTCCCACTCCCACTTTTT
60.179
55.000
0.00
0.00
0.00
1.94
2060
7261
2.148768
CGTCCCACTCCCACTTTTTAC
58.851
52.381
0.00
0.00
0.00
2.01
2066
7267
3.702045
CCACTCCCACTTTTTACCAACAA
59.298
43.478
0.00
0.00
0.00
2.83
2076
7277
7.063544
CCACTTTTTACCAACAATTCAAACGAA
59.936
33.333
0.00
0.00
0.00
3.85
2123
7324
6.949352
AGAAAATCAGCTCTGTTCTTTCAA
57.051
33.333
15.85
0.00
31.98
2.69
2187
7388
5.300752
TCACAAATCAGTTTCCACTCTCTC
58.699
41.667
0.00
0.00
0.00
3.20
2188
7389
5.070981
TCACAAATCAGTTTCCACTCTCTCT
59.929
40.000
0.00
0.00
0.00
3.10
2189
7390
5.762218
CACAAATCAGTTTCCACTCTCTCTT
59.238
40.000
0.00
0.00
0.00
2.85
2190
7391
6.261826
CACAAATCAGTTTCCACTCTCTCTTT
59.738
38.462
0.00
0.00
0.00
2.52
2191
7392
6.830838
ACAAATCAGTTTCCACTCTCTCTTTT
59.169
34.615
0.00
0.00
0.00
2.27
2192
7393
6.874288
AATCAGTTTCCACTCTCTCTTTTG
57.126
37.500
0.00
0.00
0.00
2.44
2194
7395
4.164221
TCAGTTTCCACTCTCTCTTTTGGT
59.836
41.667
0.00
0.00
0.00
3.67
2195
7396
4.884164
CAGTTTCCACTCTCTCTTTTGGTT
59.116
41.667
0.00
0.00
0.00
3.67
2196
7397
6.055588
CAGTTTCCACTCTCTCTTTTGGTTA
58.944
40.000
0.00
0.00
0.00
2.85
2197
7398
6.712547
CAGTTTCCACTCTCTCTTTTGGTTAT
59.287
38.462
0.00
0.00
0.00
1.89
2199
7400
8.606830
AGTTTCCACTCTCTCTTTTGGTTATAT
58.393
33.333
0.00
0.00
0.00
0.86
2200
7401
9.232473
GTTTCCACTCTCTCTTTTGGTTATATT
57.768
33.333
0.00
0.00
0.00
1.28
2201
7402
9.807921
TTTCCACTCTCTCTTTTGGTTATATTT
57.192
29.630
0.00
0.00
0.00
1.40
2202
7403
9.449719
TTCCACTCTCTCTTTTGGTTATATTTC
57.550
33.333
0.00
0.00
0.00
2.17
2204
7405
7.011482
CCACTCTCTCTTTTGGTTATATTTCCG
59.989
40.741
0.00
0.00
0.00
4.30
2205
7406
7.549488
CACTCTCTCTTTTGGTTATATTTCCGT
59.451
37.037
0.00
0.00
0.00
4.69
2206
7407
8.101419
ACTCTCTCTTTTGGTTATATTTCCGTT
58.899
33.333
0.00
0.00
0.00
4.44
2207
7408
9.595823
CTCTCTCTTTTGGTTATATTTCCGTTA
57.404
33.333
0.00
0.00
0.00
3.18
2210
7411
9.675464
TCTCTTTTGGTTATATTTCCGTTATGT
57.325
29.630
0.00
0.00
0.00
2.29
2211
7412
9.931210
CTCTTTTGGTTATATTTCCGTTATGTC
57.069
33.333
0.00
0.00
0.00
3.06
2213
7414
5.910637
TGGTTATATTTCCGTTATGTCGC
57.089
39.130
0.00
0.00
0.00
5.19
2216
7417
5.464389
GGTTATATTTCCGTTATGTCGCAGT
59.536
40.000
0.00
0.00
0.00
4.40
2218
7419
7.169645
GGTTATATTTCCGTTATGTCGCAGTAA
59.830
37.037
0.00
0.00
0.00
2.24
2219
7420
8.706035
GTTATATTTCCGTTATGTCGCAGTAAT
58.294
33.333
0.00
0.00
0.00
1.89
2221
7422
2.816689
TCCGTTATGTCGCAGTAATGG
58.183
47.619
0.00
0.00
38.00
3.16
2222
7423
2.427812
TCCGTTATGTCGCAGTAATGGA
59.572
45.455
9.15
9.15
41.40
3.41
2223
7424
3.119065
TCCGTTATGTCGCAGTAATGGAA
60.119
43.478
10.23
0.00
40.96
3.53
2225
7426
4.260212
CCGTTATGTCGCAGTAATGGAAAG
60.260
45.833
0.00
0.00
38.63
2.62
2228
7429
1.339631
TGTCGCAGTAATGGAAAGGGG
60.340
52.381
0.00
0.00
0.00
4.79
2230
7431
2.093341
GTCGCAGTAATGGAAAGGGGTA
60.093
50.000
0.00
0.00
0.00
3.69
2231
7432
2.572556
TCGCAGTAATGGAAAGGGGTAA
59.427
45.455
0.00
0.00
0.00
2.85
2233
7434
3.315191
CGCAGTAATGGAAAGGGGTAATG
59.685
47.826
0.00
0.00
0.00
1.90
2235
7436
3.636764
CAGTAATGGAAAGGGGTAATGCC
59.363
47.826
0.00
0.00
0.00
4.40
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
137
162
1.135094
ATGGGCTTCATCTCCGACAT
58.865
50.000
0.00
0.00
0.00
3.06
170
200
3.659089
CTCCCCGTCGGCGACAAAT
62.659
63.158
35.62
0.00
41.33
2.32
192
233
2.268920
CCCATCTCACCACCCACG
59.731
66.667
0.00
0.00
0.00
4.94
328
374
2.433664
CCACCGAACTACCGTGGC
60.434
66.667
0.00
0.00
0.00
5.01
432
491
2.676121
CAGACCCATTTGCGGCCA
60.676
61.111
2.24
0.00
0.00
5.36
527
586
1.826096
TCCATTTCGTCCATCACCGTA
59.174
47.619
0.00
0.00
0.00
4.02
535
594
1.452110
CAGCACATCCATTTCGTCCA
58.548
50.000
0.00
0.00
0.00
4.02
550
613
1.416030
TGTGTAAGAGCAACTCCAGCA
59.584
47.619
0.00
0.00
0.00
4.41
618
1900
1.450312
GACCAGACCAATCCCGCAG
60.450
63.158
0.00
0.00
0.00
5.18
624
1906
0.183731
GGGATGGGACCAGACCAATC
59.816
60.000
15.65
0.00
42.17
2.67
625
1907
0.552367
TGGGATGGGACCAGACCAAT
60.552
55.000
12.67
0.00
42.17
3.16
754
2039
1.600107
GGGTGCTTCCGGATACACA
59.400
57.895
28.55
13.85
37.00
3.72
847
2144
4.974645
TGTGTTGATGGTAGGAAGAGTT
57.025
40.909
0.00
0.00
0.00
3.01
895
2193
7.283127
TGAACAGAGCTAGTTTGATTTTCTTGT
59.717
33.333
5.59
0.00
0.00
3.16
937
2235
6.174720
AGTGAAAACTGACTTGTGATCCTA
57.825
37.500
0.00
0.00
0.00
2.94
954
2254
2.669569
GCGCTGCTGGGAGTGAAA
60.670
61.111
11.96
0.00
0.00
2.69
972
2273
5.978814
TCTCCTATACTTCTTGTTCTTGCC
58.021
41.667
0.00
0.00
0.00
4.52
999
2300
4.776322
TTCGCCGGACCAGCCATG
62.776
66.667
5.05
0.00
35.94
3.66
1050
2351
2.035442
GTCCTTGAGCGCTTCCACC
61.035
63.158
13.26
0.00
0.00
4.61
1056
2357
4.400961
GCCTGGTCCTTGAGCGCT
62.401
66.667
11.27
11.27
32.15
5.92
1080
2381
1.748879
GGCATAGTTCCAGCGGCAA
60.749
57.895
1.45
0.00
0.00
4.52
1236
2537
0.179062
CCCAGCAGCTGAGGTACATC
60.179
60.000
24.90
0.00
32.44
3.06
1277
2578
1.475392
CGAACACAACACCCCTAACCA
60.475
52.381
0.00
0.00
0.00
3.67
1286
2587
0.098728
AGCTGCAACGAACACAACAC
59.901
50.000
1.02
0.00
0.00
3.32
1304
2605
5.966636
TGTCGCATAAGTATAAGCACAAG
57.033
39.130
0.00
0.00
0.00
3.16
1315
2616
1.280710
TCATGGGGTTGTCGCATAAGT
59.719
47.619
0.00
0.00
45.64
2.24
1317
2618
1.680555
GGTCATGGGGTTGTCGCATAA
60.681
52.381
0.00
0.00
45.64
1.90
1318
2619
0.107410
GGTCATGGGGTTGTCGCATA
60.107
55.000
0.00
0.00
45.64
3.14
1320
2621
2.033448
GGTCATGGGGTTGTCGCA
59.967
61.111
0.00
0.00
42.62
5.10
1323
2624
0.596082
CAAACGGTCATGGGGTTGTC
59.404
55.000
0.00
0.00
0.00
3.18
1325
2626
1.898902
TACAAACGGTCATGGGGTTG
58.101
50.000
8.07
8.07
0.00
3.77
1326
2627
2.660670
TTACAAACGGTCATGGGGTT
57.339
45.000
0.00
0.00
0.00
4.11
1327
2628
2.660670
TTTACAAACGGTCATGGGGT
57.339
45.000
0.00
0.00
0.00
4.95
1330
2631
4.155099
TGCTGTATTTACAAACGGTCATGG
59.845
41.667
0.00
0.00
35.50
3.66
1333
2634
3.184783
CGTGCTGTATTTACAAACGGTCA
59.815
43.478
13.66
0.00
40.10
4.02
1335
2636
3.391965
TCGTGCTGTATTTACAAACGGT
58.608
40.909
18.10
0.00
42.14
4.83
1337
2638
5.198116
TCATCGTGCTGTATTTACAAACG
57.802
39.130
14.67
14.67
42.70
3.60
1341
2642
6.279882
TCATCATCATCGTGCTGTATTTACA
58.720
36.000
0.00
0.00
34.56
2.41
1342
2643
6.769608
TCATCATCATCGTGCTGTATTTAC
57.230
37.500
0.00
0.00
0.00
2.01
1343
2644
7.153985
TCATCATCATCATCGTGCTGTATTTA
58.846
34.615
0.00
0.00
0.00
1.40
1344
2645
5.993441
TCATCATCATCATCGTGCTGTATTT
59.007
36.000
0.00
0.00
0.00
1.40
1345
2646
5.544650
TCATCATCATCATCGTGCTGTATT
58.455
37.500
0.00
0.00
0.00
1.89
1346
2647
5.143376
TCATCATCATCATCGTGCTGTAT
57.857
39.130
0.00
0.00
0.00
2.29
1347
2648
4.589216
TCATCATCATCATCGTGCTGTA
57.411
40.909
0.00
0.00
0.00
2.74
1348
2649
3.464111
TCATCATCATCATCGTGCTGT
57.536
42.857
0.00
0.00
0.00
4.40
1351
2652
5.352643
TTTCATCATCATCATCATCGTGC
57.647
39.130
0.00
0.00
0.00
5.34
1352
2653
8.797266
AAATTTTCATCATCATCATCATCGTG
57.203
30.769
0.00
0.00
0.00
4.35
1355
2656
7.061905
GCCGAAATTTTCATCATCATCATCATC
59.938
37.037
9.66
0.00
0.00
2.92
1356
2657
6.866770
GCCGAAATTTTCATCATCATCATCAT
59.133
34.615
9.66
0.00
0.00
2.45
1357
2658
6.040054
AGCCGAAATTTTCATCATCATCATCA
59.960
34.615
9.66
0.00
0.00
3.07
1358
2659
6.444633
AGCCGAAATTTTCATCATCATCATC
58.555
36.000
9.66
0.00
0.00
2.92
1359
2660
6.401047
AGCCGAAATTTTCATCATCATCAT
57.599
33.333
9.66
0.00
0.00
2.45
1360
2661
5.840243
AGCCGAAATTTTCATCATCATCA
57.160
34.783
9.66
0.00
0.00
3.07
1362
2663
7.514784
TCATAGCCGAAATTTTCATCATCAT
57.485
32.000
9.66
0.00
0.00
2.45
1395
2788
1.985159
AGAACATGCACAAGGAGGGTA
59.015
47.619
0.00
0.00
0.00
3.69
1443
2836
3.132289
TCCTCTCTTCACAAACGTCAACT
59.868
43.478
0.00
0.00
0.00
3.16
1471
2894
5.242434
TGTATTCTGTATGCCTCGTTTTGT
58.758
37.500
0.00
0.00
0.00
2.83
1501
2931
2.301870
TGTTCGGTACAGGAAGCTGAAT
59.698
45.455
0.00
0.00
31.68
2.57
1536
2966
0.906775
CCTGTTCTACCCGGCCTTTA
59.093
55.000
0.00
0.00
0.00
1.85
1542
2972
2.666098
CCACCCCTGTTCTACCCGG
61.666
68.421
0.00
0.00
0.00
5.73
1543
2973
1.486145
AACCACCCCTGTTCTACCCG
61.486
60.000
0.00
0.00
0.00
5.28
1544
2974
0.037734
CAACCACCCCTGTTCTACCC
59.962
60.000
0.00
0.00
0.00
3.69
1545
2975
1.061546
TCAACCACCCCTGTTCTACC
58.938
55.000
0.00
0.00
0.00
3.18
1558
5773
2.159099
GGTGTATCGCTGAGATCAACCA
60.159
50.000
15.72
1.57
41.27
3.67
1560
5775
2.474816
GGGTGTATCGCTGAGATCAAC
58.525
52.381
0.00
0.00
40.66
3.18
1562
5777
0.668535
CGGGTGTATCGCTGAGATCA
59.331
55.000
0.00
0.00
40.66
2.92
1633
5854
2.437359
GCCACCTCTTGCAGCGAT
60.437
61.111
0.00
0.00
0.00
4.58
1644
5865
1.794714
ATAATCTCTGACGGCCACCT
58.205
50.000
2.24
0.00
0.00
4.00
1654
5875
8.506437
TCAAAGTACACAAAGCAATAATCTCTG
58.494
33.333
0.00
0.00
0.00
3.35
1664
5885
4.460263
ACTCCATCAAAGTACACAAAGCA
58.540
39.130
0.00
0.00
0.00
3.91
1725
5985
4.916249
GCAGAGCAAAGAAATTCAGAACAG
59.084
41.667
0.00
0.00
0.00
3.16
1797
6116
5.321959
ACTATGTGTGTCTCACTCTGATG
57.678
43.478
6.60
0.00
46.27
3.07
1798
6117
4.400884
GGACTATGTGTGTCTCACTCTGAT
59.599
45.833
6.60
0.00
46.27
2.90
1816
6135
6.098017
GCGCTTCTAACTAAAAAGAGGACTA
58.902
40.000
0.00
0.00
0.00
2.59
1817
6136
4.930405
GCGCTTCTAACTAAAAAGAGGACT
59.070
41.667
0.00
0.00
0.00
3.85
1819
6138
3.924686
CGCGCTTCTAACTAAAAAGAGGA
59.075
43.478
5.56
0.00
0.00
3.71
1825
6144
0.717224
CGGCGCGCTTCTAACTAAAA
59.283
50.000
32.29
0.00
0.00
1.52
1826
6145
0.388907
ACGGCGCGCTTCTAACTAAA
60.389
50.000
32.29
0.00
0.00
1.85
1829
6148
2.203972
TACACGGCGCGCTTCTAACT
62.204
55.000
32.29
9.53
0.00
2.24
1830
6149
1.346378
TTACACGGCGCGCTTCTAAC
61.346
55.000
32.29
12.20
0.00
2.34
1836
6155
0.303493
CATATTTTACACGGCGCGCT
59.697
50.000
32.29
14.07
0.00
5.92
1837
6156
1.259544
GCATATTTTACACGGCGCGC
61.260
55.000
25.94
25.94
0.00
6.86
1849
6168
2.849880
AAGCATTCGTGCGCATATTT
57.150
40.000
15.91
0.00
40.27
1.40
1863
6182
1.741706
CGTCTGCTCATCCAAAAGCAT
59.258
47.619
0.00
0.00
46.69
3.79
1864
6183
1.159285
CGTCTGCTCATCCAAAAGCA
58.841
50.000
0.00
0.00
45.83
3.91
1865
6184
0.449388
CCGTCTGCTCATCCAAAAGC
59.551
55.000
0.00
0.00
39.02
3.51
1867
6186
1.071542
TGACCGTCTGCTCATCCAAAA
59.928
47.619
0.00
0.00
0.00
2.44
1868
6187
0.684535
TGACCGTCTGCTCATCCAAA
59.315
50.000
0.00
0.00
0.00
3.28
1869
6188
0.904649
ATGACCGTCTGCTCATCCAA
59.095
50.000
0.00
0.00
0.00
3.53
1870
6189
0.176449
CATGACCGTCTGCTCATCCA
59.824
55.000
0.00
0.00
0.00
3.41
1871
6190
0.531532
CCATGACCGTCTGCTCATCC
60.532
60.000
0.00
0.00
0.00
3.51
1874
6193
1.293179
CACCATGACCGTCTGCTCA
59.707
57.895
0.00
0.00
0.00
4.26
1877
6196
1.005037
TGACACCATGACCGTCTGC
60.005
57.895
0.00
0.00
0.00
4.26
1878
6197
0.390340
CCTGACACCATGACCGTCTG
60.390
60.000
0.00
1.95
0.00
3.51
1880
6199
0.389948
GTCCTGACACCATGACCGTC
60.390
60.000
0.00
0.00
33.54
4.79
1881
6200
1.671742
GTCCTGACACCATGACCGT
59.328
57.895
0.00
0.00
33.54
4.83
1882
6201
1.079127
GGTCCTGACACCATGACCG
60.079
63.158
0.00
0.00
44.33
4.79
1884
6203
1.079127
CGGGTCCTGACACCATGAC
60.079
63.158
0.00
0.00
38.32
3.06
1900
6219
2.046892
CAGTGTCTGCCCTTCCGG
60.047
66.667
0.00
0.00
0.00
5.14
1909
6228
2.601398
CGGTGCTGTGCAGTGTCTG
61.601
63.158
0.00
0.00
40.08
3.51
1910
6229
2.280389
CGGTGCTGTGCAGTGTCT
60.280
61.111
0.00
0.00
40.08
3.41
1911
6230
3.349006
CCGGTGCTGTGCAGTGTC
61.349
66.667
0.00
0.00
40.08
3.67
1912
6231
4.935495
CCCGGTGCTGTGCAGTGT
62.935
66.667
0.00
0.00
40.08
3.55
1913
6232
4.624364
TCCCGGTGCTGTGCAGTG
62.624
66.667
0.00
0.00
40.08
3.66
1919
6238
3.991051
CTGTCGTCCCGGTGCTGT
61.991
66.667
0.00
0.00
0.00
4.40
1923
6242
4.778415
CTCGCTGTCGTCCCGGTG
62.778
72.222
0.00
0.00
36.96
4.94
1925
6244
4.180946
CTCTCGCTGTCGTCCCGG
62.181
72.222
0.00
0.00
36.96
5.73
1926
6245
2.473760
ATCTCTCGCTGTCGTCCCG
61.474
63.158
0.00
0.00
36.96
5.14
1928
6247
1.587613
GCATCTCTCGCTGTCGTCC
60.588
63.158
0.00
0.00
36.96
4.79
1943
7139
1.002868
AGCTCACTTTGCTCCGCAT
60.003
52.632
0.00
0.00
38.76
4.73
1954
7150
3.230115
GCTTTCAGCAGAGCTCACT
57.770
52.632
17.77
10.11
41.89
3.41
1963
7159
3.690167
AGGATACCTGGTGCTTTCAGCA
61.690
50.000
10.23
0.00
46.54
4.41
1965
7161
3.706594
TCTAGGATACCTGGTGCTTTCAG
59.293
47.826
10.23
0.00
33.63
3.02
1966
7162
3.719871
TCTAGGATACCTGGTGCTTTCA
58.280
45.455
10.23
0.00
33.63
2.69
1969
7170
4.324331
GGTTTTCTAGGATACCTGGTGCTT
60.324
45.833
10.23
0.40
33.63
3.91
1976
7177
2.158943
GCGCTGGTTTTCTAGGATACCT
60.159
50.000
11.52
0.00
37.71
3.08
1983
7184
2.750888
GCGGGCGCTGGTTTTCTAG
61.751
63.158
7.64
0.00
38.26
2.43
1984
7185
2.744709
GCGGGCGCTGGTTTTCTA
60.745
61.111
7.64
0.00
38.26
2.10
1986
7187
4.404654
CTGCGGGCGCTGGTTTTC
62.405
66.667
7.64
0.00
42.51
2.29
2000
7201
3.903932
GAGCAAAACAGGCGGCTGC
62.904
63.158
36.06
23.77
36.59
5.25
2002
7203
2.985847
GGAGCAAAACAGGCGGCT
60.986
61.111
5.25
5.25
39.75
5.52
2005
7206
4.404654
GCCGGAGCAAAACAGGCG
62.405
66.667
5.05
0.00
38.59
5.52
2019
7220
3.488047
CGGGGTTATATACGTGATAGCCG
60.488
52.174
14.71
0.00
32.45
5.52
2024
7225
2.827921
GGGACGGGGTTATATACGTGAT
59.172
50.000
0.00
0.00
39.95
3.06
2027
7228
1.963515
GTGGGACGGGGTTATATACGT
59.036
52.381
0.00
0.00
42.88
3.57
2029
7230
2.564504
GGAGTGGGACGGGGTTATATAC
59.435
54.545
0.00
0.00
0.00
1.47
2041
7242
2.158579
TGGTAAAAAGTGGGAGTGGGAC
60.159
50.000
0.00
0.00
0.00
4.46
2042
7243
2.136863
TGGTAAAAAGTGGGAGTGGGA
58.863
47.619
0.00
0.00
0.00
4.37
2044
7245
3.292460
TGTTGGTAAAAAGTGGGAGTGG
58.708
45.455
0.00
0.00
0.00
4.00
2046
7247
5.659079
TGAATTGTTGGTAAAAAGTGGGAGT
59.341
36.000
0.00
0.00
0.00
3.85
2047
7248
6.155475
TGAATTGTTGGTAAAAAGTGGGAG
57.845
37.500
0.00
0.00
0.00
4.30
2048
7249
6.546428
TTGAATTGTTGGTAAAAAGTGGGA
57.454
33.333
0.00
0.00
0.00
4.37
2050
7251
6.531948
TCGTTTGAATTGTTGGTAAAAAGTGG
59.468
34.615
0.00
0.00
0.00
4.00
2052
7253
7.599245
TGTTCGTTTGAATTGTTGGTAAAAAGT
59.401
29.630
0.00
0.00
36.29
2.66
2054
7255
7.884816
TGTTCGTTTGAATTGTTGGTAAAAA
57.115
28.000
0.00
0.00
36.29
1.94
2056
7257
7.258441
TGATGTTCGTTTGAATTGTTGGTAAA
58.742
30.769
0.00
0.00
36.29
2.01
2057
7258
6.796426
TGATGTTCGTTTGAATTGTTGGTAA
58.204
32.000
0.00
0.00
36.29
2.85
2058
7259
6.378710
TGATGTTCGTTTGAATTGTTGGTA
57.621
33.333
0.00
0.00
36.29
3.25
2060
7261
6.768029
ATTGATGTTCGTTTGAATTGTTGG
57.232
33.333
0.00
0.00
36.29
3.77
2066
7267
6.969366
TCACTGAATTGATGTTCGTTTGAAT
58.031
32.000
0.00
0.00
36.29
2.57
2076
7277
8.316946
TCTTGAACTATCTCACTGAATTGATGT
58.683
33.333
0.00
0.00
0.00
3.06
2187
7388
7.375017
GCGACATAACGGAAATATAACCAAAAG
59.625
37.037
0.00
0.00
0.00
2.27
2188
7389
7.148289
TGCGACATAACGGAAATATAACCAAAA
60.148
33.333
0.00
0.00
0.00
2.44
2189
7390
6.315642
TGCGACATAACGGAAATATAACCAAA
59.684
34.615
0.00
0.00
0.00
3.28
2190
7391
5.816258
TGCGACATAACGGAAATATAACCAA
59.184
36.000
0.00
0.00
0.00
3.67
2191
7392
5.358090
TGCGACATAACGGAAATATAACCA
58.642
37.500
0.00
0.00
0.00
3.67
2192
7393
5.464389
ACTGCGACATAACGGAAATATAACC
59.536
40.000
0.00
0.00
32.77
2.85
2194
7395
8.705134
CATTACTGCGACATAACGGAAATATAA
58.295
33.333
0.00
0.00
32.77
0.98
2195
7396
7.329962
CCATTACTGCGACATAACGGAAATATA
59.670
37.037
0.00
0.00
32.77
0.86
2196
7397
6.147164
CCATTACTGCGACATAACGGAAATAT
59.853
38.462
0.00
0.00
32.77
1.28
2197
7398
5.464057
CCATTACTGCGACATAACGGAAATA
59.536
40.000
0.00
0.00
32.77
1.40
2199
7400
3.619483
CCATTACTGCGACATAACGGAAA
59.381
43.478
0.00
0.00
32.77
3.13
2200
7401
3.119065
TCCATTACTGCGACATAACGGAA
60.119
43.478
0.00
0.00
32.77
4.30
2201
7402
2.427812
TCCATTACTGCGACATAACGGA
59.572
45.455
0.00
0.00
0.00
4.69
2202
7403
2.816689
TCCATTACTGCGACATAACGG
58.183
47.619
0.00
0.00
0.00
4.44
2204
7405
4.035208
CCCTTTCCATTACTGCGACATAAC
59.965
45.833
0.00
0.00
0.00
1.89
2205
7406
4.196193
CCCTTTCCATTACTGCGACATAA
58.804
43.478
0.00
0.00
0.00
1.90
2206
7407
3.433031
CCCCTTTCCATTACTGCGACATA
60.433
47.826
0.00
0.00
0.00
2.29
2207
7408
2.643551
CCCTTTCCATTACTGCGACAT
58.356
47.619
0.00
0.00
0.00
3.06
2208
7409
1.339631
CCCCTTTCCATTACTGCGACA
60.340
52.381
0.00
0.00
0.00
4.35
2210
7411
0.988832
ACCCCTTTCCATTACTGCGA
59.011
50.000
0.00
0.00
0.00
5.10
2211
7412
2.702592
TACCCCTTTCCATTACTGCG
57.297
50.000
0.00
0.00
0.00
5.18
2213
7414
3.636764
GGCATTACCCCTTTCCATTACTG
59.363
47.826
0.00
0.00
0.00
2.74
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.