Multiple sequence alignment - TraesCS2D01G533800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G533800 chr2D 100.000 2267 0 0 1 2267 618059727 618061993 0.000000e+00 4187.0
1 TraesCS2D01G533800 chr2D 82.353 544 60 16 797 1305 618003882 618004424 7.430000e-120 440.0
2 TraesCS2D01G533800 chr2D 82.096 458 73 8 1 452 617207486 617207032 1.270000e-102 383.0
3 TraesCS2D01G533800 chr2D 88.608 316 27 7 990 1299 618132560 618132872 2.130000e-100 375.0
4 TraesCS2D01G533800 chr2D 84.861 251 29 5 1183 1430 588529930 588530174 6.250000e-61 244.0
5 TraesCS2D01G533800 chr2D 85.185 108 9 5 1561 1662 618128321 618128427 1.110000e-18 104.0
6 TraesCS2D01G533800 chr2A 85.644 1226 109 40 588 1780 748557911 748559102 0.000000e+00 1227.0
7 TraesCS2D01G533800 chr2A 81.947 986 105 27 762 1708 748534771 748535722 0.000000e+00 767.0
8 TraesCS2D01G533800 chr2A 89.525 611 49 6 1 596 748556090 748556700 0.000000e+00 760.0
9 TraesCS2D01G533800 chr2A 84.530 627 63 19 690 1305 748697831 748698434 6.970000e-165 590.0
10 TraesCS2D01G533800 chr2A 80.411 730 80 26 790 1467 748542096 748542814 4.350000e-137 497.0
11 TraesCS2D01G533800 chr2A 82.900 538 63 8 766 1277 748550373 748550907 7.380000e-125 457.0
12 TraesCS2D01G533800 chr2A 85.753 365 32 6 1359 1708 748529615 748529974 3.560000e-98 368.0
13 TraesCS2D01G533800 chr2A 85.477 241 29 5 1194 1430 723125025 723125263 1.740000e-61 246.0
14 TraesCS2D01G533800 chr2A 93.333 120 8 0 2068 2187 748559856 748559975 6.430000e-41 178.0
15 TraesCS2D01G533800 chr2A 86.667 150 17 2 2002 2148 748529319 748529468 1.800000e-36 163.0
16 TraesCS2D01G533800 chr2A 90.909 99 8 1 1958 2055 748685075 748685173 5.080000e-27 132.0
17 TraesCS2D01G533800 chr2B 81.502 1065 115 48 723 1730 754004365 754005404 0.000000e+00 800.0
18 TraesCS2D01G533800 chr2B 79.634 928 103 32 724 1581 754010686 754011597 2.510000e-164 588.0
19 TraesCS2D01G533800 chr2B 79.735 755 94 29 593 1305 754015546 754016283 2.020000e-135 492.0
20 TraesCS2D01G533800 chr2B 84.392 378 43 9 1354 1723 754014147 754014516 7.700000e-95 357.0
21 TraesCS2D01G533800 chr2B 81.910 398 55 13 1 396 508415991 508416373 1.010000e-83 320.0
22 TraesCS2D01G533800 chr2B 89.655 232 21 3 564 792 753995493 753995724 2.200000e-75 292.0
23 TraesCS2D01G533800 chr2B 80.051 396 67 10 161 547 415387790 415387398 1.330000e-72 283.0
24 TraesCS2D01G533800 chr2B 86.831 243 27 4 1191 1430 754550503 754550743 1.330000e-67 267.0
25 TraesCS2D01G533800 chr2B 87.342 158 14 2 1720 1872 754011704 754011860 2.310000e-40 176.0
26 TraesCS2D01G533800 chr2B 93.548 62 2 2 2191 2250 128340114 128340175 8.620000e-15 91.6
27 TraesCS2D01G533800 chr2B 96.875 32 1 0 1723 1754 754343469 754343500 1.000000e-03 54.7
28 TraesCS2D01G533800 chr5D 81.611 571 70 17 1 565 109579590 109580131 7.430000e-120 440.0
29 TraesCS2D01G533800 chr5D 77.005 561 95 21 9 547 520288879 520288331 7.920000e-75 291.0
30 TraesCS2D01G533800 chr5D 93.548 62 2 2 2192 2251 559603544 559603605 8.620000e-15 91.6
31 TraesCS2D01G533800 chr6D 81.410 468 65 20 1 461 437400906 437401358 1.660000e-96 363.0
32 TraesCS2D01G533800 chr3A 78.369 564 96 16 1 547 27035881 27036435 2.160000e-90 342.0
33 TraesCS2D01G533800 chr3D 83.747 363 55 4 1 361 488276633 488276993 7.760000e-90 340.0
34 TraesCS2D01G533800 chr3D 78.926 484 87 10 73 549 416913010 416912535 4.700000e-82 315.0
35 TraesCS2D01G533800 chr3D 96.610 59 2 0 2192 2250 54640650 54640708 5.150000e-17 99.0
36 TraesCS2D01G533800 chr4D 77.127 529 90 20 1 526 84259314 84258814 6.170000e-71 278.0
37 TraesCS2D01G533800 chr4D 95.161 62 2 1 2191 2252 196875344 196875404 1.850000e-16 97.1
38 TraesCS2D01G533800 chr3B 84.337 249 30 6 1188 1430 43733482 43733727 3.760000e-58 235.0
39 TraesCS2D01G533800 chr7B 96.774 62 2 0 2192 2253 697395609 697395548 1.110000e-18 104.0
40 TraesCS2D01G533800 chr7B 98.246 57 1 0 2192 2248 697398056 697398000 1.430000e-17 100.0
41 TraesCS2D01G533800 chr7B 95.161 62 3 0 2192 2253 684983700 684983639 5.150000e-17 99.0
42 TraesCS2D01G533800 chr7B 96.552 58 2 0 2192 2249 666013242 666013299 1.850000e-16 97.1
43 TraesCS2D01G533800 chr7A 93.651 63 3 1 2192 2254 20204977 20205038 2.400000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G533800 chr2D 618059727 618061993 2266 False 4187.000000 4187 100.000000 1 2267 1 chr2D.!!$F3 2266
1 TraesCS2D01G533800 chr2D 618003882 618004424 542 False 440.000000 440 82.353000 797 1305 1 chr2D.!!$F2 508
2 TraesCS2D01G533800 chr2A 748534771 748535722 951 False 767.000000 767 81.947000 762 1708 1 chr2A.!!$F2 946
3 TraesCS2D01G533800 chr2A 748556090 748559975 3885 False 721.666667 1227 89.500667 1 2187 3 chr2A.!!$F8 2186
4 TraesCS2D01G533800 chr2A 748697831 748698434 603 False 590.000000 590 84.530000 690 1305 1 chr2A.!!$F6 615
5 TraesCS2D01G533800 chr2A 748542096 748542814 718 False 497.000000 497 80.411000 790 1467 1 chr2A.!!$F3 677
6 TraesCS2D01G533800 chr2A 748550373 748550907 534 False 457.000000 457 82.900000 766 1277 1 chr2A.!!$F4 511
7 TraesCS2D01G533800 chr2A 748529319 748529974 655 False 265.500000 368 86.210000 1359 2148 2 chr2A.!!$F7 789
8 TraesCS2D01G533800 chr2B 754004365 754005404 1039 False 800.000000 800 81.502000 723 1730 1 chr2B.!!$F4 1007
9 TraesCS2D01G533800 chr2B 754010686 754016283 5597 False 403.250000 588 82.775750 593 1872 4 chr2B.!!$F7 1279
10 TraesCS2D01G533800 chr5D 109579590 109580131 541 False 440.000000 440 81.611000 1 565 1 chr5D.!!$F1 564
11 TraesCS2D01G533800 chr5D 520288331 520288879 548 True 291.000000 291 77.005000 9 547 1 chr5D.!!$R1 538
12 TraesCS2D01G533800 chr3A 27035881 27036435 554 False 342.000000 342 78.369000 1 547 1 chr3A.!!$F1 546
13 TraesCS2D01G533800 chr4D 84258814 84259314 500 True 278.000000 278 77.127000 1 526 1 chr4D.!!$R1 525


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
847 2144 0.339162 TATAACCCCGTCCCACTCCA 59.661 55.0 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1870 6189 0.176449 CATGACCGTCTGCTCATCCA 59.824 55.0 0.0 0.0 0.0 3.41 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
170 200 3.479203 CCATGGCGGTGGCTAGGA 61.479 66.667 0.00 0.00 39.81 2.94
432 491 3.908213 ACGCATTTCAGCCGTAATTTTT 58.092 36.364 0.00 0.00 0.00 1.94
535 594 1.376295 GGCCCAAACGTACGGTGAT 60.376 57.895 21.06 0.00 0.00 3.06
550 613 2.643551 GGTGATGGACGAAATGGATGT 58.356 47.619 0.00 0.00 0.00 3.06
572 635 2.548920 GCTGGAGTTGCTCTTACACACT 60.549 50.000 0.00 0.00 0.00 3.55
577 640 2.965831 AGTTGCTCTTACACACTGAGGA 59.034 45.455 0.00 0.00 0.00 3.71
624 1906 4.790765 TGAAGTATCTCATATCTGCGGG 57.209 45.455 0.00 0.00 0.00 6.13
625 1907 4.407365 TGAAGTATCTCATATCTGCGGGA 58.593 43.478 0.00 0.00 0.00 5.14
696 1978 4.760047 CAAGACGGGGCGAGGTGG 62.760 72.222 0.00 0.00 0.00 4.61
758 2043 2.889578 CGCAAGCAAGCAAATGTGT 58.110 47.368 1.32 0.00 0.00 3.72
761 2046 2.595536 CGCAAGCAAGCAAATGTGTATC 59.404 45.455 1.32 0.00 0.00 2.24
785 2080 1.304134 GCACCCGGTTTCCTGGAAT 60.304 57.895 10.45 0.00 32.04 3.01
847 2144 0.339162 TATAACCCCGTCCCACTCCA 59.661 55.000 0.00 0.00 0.00 3.86
937 2235 1.940613 GTTCAACTTCGCAAGTCCACT 59.059 47.619 2.65 0.00 41.91 4.00
954 2254 4.160329 TCCACTAGGATCACAAGTCAGTT 58.840 43.478 0.00 0.00 39.61 3.16
987 2288 1.941812 CGCGGCAAGAACAAGAAGT 59.058 52.632 0.00 0.00 0.00 3.01
989 2290 1.732259 CGCGGCAAGAACAAGAAGTAT 59.268 47.619 0.00 0.00 0.00 2.12
997 2298 6.536941 GGCAAGAACAAGAAGTATAGGAGAAG 59.463 42.308 0.00 0.00 0.00 2.85
999 2300 6.228616 AGAACAAGAAGTATAGGAGAAGCC 57.771 41.667 0.00 0.00 0.00 4.35
1068 2369 2.035442 GGTGGAAGCGCTCAAGGAC 61.035 63.158 12.06 3.26 0.00 3.85
1233 2534 1.437986 CGAGGAGGGGCTAAGAACG 59.562 63.158 0.00 0.00 0.00 3.95
1236 2537 1.221021 GGAGGGGCTAAGAACGGTG 59.779 63.158 0.00 0.00 0.00 4.94
1277 2578 4.165565 GGGCCCAAATTAGGAGTACTAGTT 59.834 45.833 19.95 0.00 33.52 2.24
1286 2587 3.991683 AGGAGTACTAGTTGGTTAGGGG 58.008 50.000 0.00 0.00 0.00 4.79
1304 2605 0.865639 GGTGTTGTGTTCGTTGCAGC 60.866 55.000 0.00 0.00 0.00 5.25
1325 2626 4.762809 GCTTGTGCTTATACTTATGCGAC 58.237 43.478 0.00 0.00 36.03 5.19
1326 2627 4.270084 GCTTGTGCTTATACTTATGCGACA 59.730 41.667 0.00 0.00 36.03 4.35
1327 2628 5.220586 GCTTGTGCTTATACTTATGCGACAA 60.221 40.000 0.00 0.00 33.65 3.18
1330 2631 4.025145 GTGCTTATACTTATGCGACAACCC 60.025 45.833 0.00 0.00 32.56 4.11
1333 2634 3.857157 ATACTTATGCGACAACCCCAT 57.143 42.857 0.00 0.00 0.00 4.00
1335 2636 1.280710 ACTTATGCGACAACCCCATGA 59.719 47.619 0.00 0.00 0.00 3.07
1337 2638 0.107410 TATGCGACAACCCCATGACC 60.107 55.000 0.00 0.00 0.00 4.02
1341 2642 0.887387 CGACAACCCCATGACCGTTT 60.887 55.000 0.00 0.00 0.00 3.60
1342 2643 0.596082 GACAACCCCATGACCGTTTG 59.404 55.000 0.00 0.00 0.00 2.93
1343 2644 0.106419 ACAACCCCATGACCGTTTGT 60.106 50.000 0.00 0.00 0.00 2.83
1344 2645 1.143277 ACAACCCCATGACCGTTTGTA 59.857 47.619 0.00 0.00 0.00 2.41
1345 2646 2.231529 CAACCCCATGACCGTTTGTAA 58.768 47.619 0.00 0.00 0.00 2.41
1346 2647 2.623889 CAACCCCATGACCGTTTGTAAA 59.376 45.455 0.00 0.00 0.00 2.01
1347 2648 3.163616 ACCCCATGACCGTTTGTAAAT 57.836 42.857 0.00 0.00 0.00 1.40
1348 2649 4.304048 ACCCCATGACCGTTTGTAAATA 57.696 40.909 0.00 0.00 0.00 1.40
1351 2652 4.095782 CCCCATGACCGTTTGTAAATACAG 59.904 45.833 0.00 0.00 37.52 2.74
1352 2653 4.438200 CCCATGACCGTTTGTAAATACAGC 60.438 45.833 0.00 0.00 37.52 4.40
1355 2656 3.184783 TGACCGTTTGTAAATACAGCACG 59.815 43.478 15.24 15.24 40.99 5.34
1356 2657 3.391965 ACCGTTTGTAAATACAGCACGA 58.608 40.909 20.30 0.00 42.49 4.35
1357 2658 3.998341 ACCGTTTGTAAATACAGCACGAT 59.002 39.130 20.30 8.08 42.49 3.73
1358 2659 4.142988 ACCGTTTGTAAATACAGCACGATG 60.143 41.667 20.30 11.92 42.49 3.84
1359 2660 4.092237 CCGTTTGTAAATACAGCACGATGA 59.908 41.667 20.30 0.00 42.49 2.92
1360 2661 5.220586 CCGTTTGTAAATACAGCACGATGAT 60.221 40.000 20.30 0.00 42.49 2.45
1362 2663 6.454981 CGTTTGTAAATACAGCACGATGATGA 60.455 38.462 16.40 0.00 42.49 2.92
1413 2806 2.969821 TTACCCTCCTTGTGCATGTT 57.030 45.000 0.00 0.00 0.00 2.71
1449 2842 5.871465 TTTTTGAAAGGCCAAAAGTTGAC 57.129 34.783 5.01 0.00 43.99 3.18
1456 2849 1.923864 GGCCAAAAGTTGACGTTTGTG 59.076 47.619 17.09 11.55 41.52 3.33
1491 2914 5.730550 TCTACAAAACGAGGCATACAGAAT 58.269 37.500 0.00 0.00 0.00 2.40
1501 2931 5.451937 CGAGGCATACAGAATACAGAGGAAA 60.452 44.000 0.00 0.00 0.00 3.13
1509 2939 6.479884 ACAGAATACAGAGGAAATTCAGCTT 58.520 36.000 0.00 0.00 33.06 3.74
1536 2966 2.154462 CCGAACAGCCAAACTCTGAAT 58.846 47.619 0.00 0.00 35.61 2.57
1542 2972 3.507622 ACAGCCAAACTCTGAATAAAGGC 59.492 43.478 0.00 0.00 41.08 4.35
1543 2973 3.092301 AGCCAAACTCTGAATAAAGGCC 58.908 45.455 0.00 0.00 41.69 5.19
1544 2974 2.159379 GCCAAACTCTGAATAAAGGCCG 60.159 50.000 0.00 0.00 34.94 6.13
1545 2975 2.423538 CCAAACTCTGAATAAAGGCCGG 59.576 50.000 0.00 0.00 0.00 6.13
1558 5773 3.007323 GCCGGGTAGAACAGGGGT 61.007 66.667 2.18 0.00 0.00 4.95
1560 5775 2.666098 CCGGGTAGAACAGGGGTGG 61.666 68.421 0.00 0.00 0.00 4.61
1562 5777 1.486145 CGGGTAGAACAGGGGTGGTT 61.486 60.000 0.00 0.00 0.00 3.67
1633 5854 1.345089 TCAAATTCGAACACCTCCGGA 59.655 47.619 2.93 2.93 0.00 5.14
1644 5865 2.496341 CTCCGGATCGCTGCAAGA 59.504 61.111 3.57 0.00 34.07 3.02
1654 5875 2.743928 CTGCAAGAGGTGGCCGTC 60.744 66.667 0.00 0.00 34.07 4.79
1664 5885 2.103263 GAGGTGGCCGTCAGAGATTATT 59.897 50.000 0.00 0.00 0.00 1.40
1725 5985 3.876589 TTGTGGCTCGAGGCGAACC 62.877 63.158 30.84 19.47 41.78 3.62
1762 6022 1.004080 TCTGCAGTCTGCTCAAGGC 60.004 57.895 24.76 0.00 45.31 4.35
1780 6040 7.569591 GCTCAAGGCACACGATATCTAATTAAC 60.570 40.741 0.34 0.00 41.35 2.01
1781 6041 7.497595 TCAAGGCACACGATATCTAATTAACT 58.502 34.615 0.34 0.00 0.00 2.24
1782 6042 8.635328 TCAAGGCACACGATATCTAATTAACTA 58.365 33.333 0.34 0.00 0.00 2.24
1783 6043 9.256477 CAAGGCACACGATATCTAATTAACTAA 57.744 33.333 0.34 0.00 0.00 2.24
1785 6045 9.257651 AGGCACACGATATCTAATTAACTAAAC 57.742 33.333 0.34 0.00 0.00 2.01
1786 6046 8.212495 GGCACACGATATCTAATTAACTAAACG 58.788 37.037 0.34 0.00 0.00 3.60
1787 6047 8.749499 GCACACGATATCTAATTAACTAAACGT 58.251 33.333 0.34 0.00 0.00 3.99
1829 6148 7.297936 TGAGACACACATAGTCCTCTTTTTA 57.702 36.000 0.00 0.00 36.68 1.52
1830 6149 7.378966 TGAGACACACATAGTCCTCTTTTTAG 58.621 38.462 0.00 0.00 36.68 1.85
1836 6155 9.706691 CACACATAGTCCTCTTTTTAGTTAGAA 57.293 33.333 0.00 0.00 0.00 2.10
1837 6156 9.930693 ACACATAGTCCTCTTTTTAGTTAGAAG 57.069 33.333 0.00 0.00 0.00 2.85
1849 6168 1.080637 TTAGAAGCGCGCCGTGTAA 60.081 52.632 30.33 21.37 0.00 2.41
1865 6184 4.911754 GTGTAAAATATGCGCACGAATG 57.088 40.909 14.90 0.00 0.00 2.67
1878 6197 2.523015 CACGAATGCTTTTGGATGAGC 58.477 47.619 4.71 0.00 39.33 4.26
1883 6202 1.159285 TGCTTTTGGATGAGCAGACG 58.841 50.000 0.00 0.00 43.46 4.18
1884 6203 0.449388 GCTTTTGGATGAGCAGACGG 59.551 55.000 0.00 0.00 38.73 4.79
1896 6215 1.016130 GCAGACGGTCATGGTGTCAG 61.016 60.000 11.27 7.82 35.09 3.51
1905 6224 1.537889 ATGGTGTCAGGACCCGGAA 60.538 57.895 0.73 0.00 34.79 4.30
1926 6245 3.337619 CAGACACTGCACAGCACC 58.662 61.111 0.00 0.00 33.79 5.01
1928 6247 3.349006 GACACTGCACAGCACCGG 61.349 66.667 0.00 0.00 33.79 5.28
1969 7170 1.202734 AGCAAAGTGAGCTCTGCTGAA 60.203 47.619 23.09 0.00 43.34 3.02
1986 7187 4.065321 CTGAAAGCACCAGGTATCCTAG 57.935 50.000 0.00 0.00 29.64 3.02
2000 7201 2.106683 CCTAGAAAACCAGCGCCCG 61.107 63.158 2.29 0.00 0.00 6.13
2002 7203 3.538785 TAGAAAACCAGCGCCCGCA 62.539 57.895 15.50 0.00 44.88 5.69
2019 7220 2.985847 AGCCGCCTGTTTTGCTCC 60.986 61.111 0.00 0.00 0.00 4.70
2024 7225 1.674322 GCCTGTTTTGCTCCGGCTA 60.674 57.895 0.00 0.00 37.76 3.93
2027 7228 1.678728 CCTGTTTTGCTCCGGCTATCA 60.679 52.381 0.00 0.00 39.59 2.15
2029 7230 0.373716 GTTTTGCTCCGGCTATCACG 59.626 55.000 0.00 0.00 39.59 4.35
2041 7242 3.488047 CGGCTATCACGTATATAACCCCG 60.488 52.174 0.00 0.00 0.00 5.73
2042 7243 3.445096 GGCTATCACGTATATAACCCCGT 59.555 47.826 0.00 0.00 0.00 5.28
2044 7245 4.439289 GCTATCACGTATATAACCCCGTCC 60.439 50.000 0.00 0.00 0.00 4.79
2046 7247 1.962807 CACGTATATAACCCCGTCCCA 59.037 52.381 0.00 0.00 0.00 4.37
2047 7248 1.963515 ACGTATATAACCCCGTCCCAC 59.036 52.381 0.00 0.00 0.00 4.61
2048 7249 2.242043 CGTATATAACCCCGTCCCACT 58.758 52.381 0.00 0.00 0.00 4.00
2050 7251 1.725803 ATATAACCCCGTCCCACTCC 58.274 55.000 0.00 0.00 0.00 3.85
2052 7253 2.480255 ATAACCCCGTCCCACTCCCA 62.480 60.000 0.00 0.00 0.00 4.37
2056 7257 2.526046 CCCGTCCCACTCCCACTTT 61.526 63.158 0.00 0.00 0.00 2.66
2057 7258 1.454539 CCGTCCCACTCCCACTTTT 59.545 57.895 0.00 0.00 0.00 2.27
2058 7259 0.179001 CCGTCCCACTCCCACTTTTT 60.179 55.000 0.00 0.00 0.00 1.94
2060 7261 2.148768 CGTCCCACTCCCACTTTTTAC 58.851 52.381 0.00 0.00 0.00 2.01
2066 7267 3.702045 CCACTCCCACTTTTTACCAACAA 59.298 43.478 0.00 0.00 0.00 2.83
2076 7277 7.063544 CCACTTTTTACCAACAATTCAAACGAA 59.936 33.333 0.00 0.00 0.00 3.85
2123 7324 6.949352 AGAAAATCAGCTCTGTTCTTTCAA 57.051 33.333 15.85 0.00 31.98 2.69
2187 7388 5.300752 TCACAAATCAGTTTCCACTCTCTC 58.699 41.667 0.00 0.00 0.00 3.20
2188 7389 5.070981 TCACAAATCAGTTTCCACTCTCTCT 59.929 40.000 0.00 0.00 0.00 3.10
2189 7390 5.762218 CACAAATCAGTTTCCACTCTCTCTT 59.238 40.000 0.00 0.00 0.00 2.85
2190 7391 6.261826 CACAAATCAGTTTCCACTCTCTCTTT 59.738 38.462 0.00 0.00 0.00 2.52
2191 7392 6.830838 ACAAATCAGTTTCCACTCTCTCTTTT 59.169 34.615 0.00 0.00 0.00 2.27
2192 7393 6.874288 AATCAGTTTCCACTCTCTCTTTTG 57.126 37.500 0.00 0.00 0.00 2.44
2194 7395 4.164221 TCAGTTTCCACTCTCTCTTTTGGT 59.836 41.667 0.00 0.00 0.00 3.67
2195 7396 4.884164 CAGTTTCCACTCTCTCTTTTGGTT 59.116 41.667 0.00 0.00 0.00 3.67
2196 7397 6.055588 CAGTTTCCACTCTCTCTTTTGGTTA 58.944 40.000 0.00 0.00 0.00 2.85
2197 7398 6.712547 CAGTTTCCACTCTCTCTTTTGGTTAT 59.287 38.462 0.00 0.00 0.00 1.89
2199 7400 8.606830 AGTTTCCACTCTCTCTTTTGGTTATAT 58.393 33.333 0.00 0.00 0.00 0.86
2200 7401 9.232473 GTTTCCACTCTCTCTTTTGGTTATATT 57.768 33.333 0.00 0.00 0.00 1.28
2201 7402 9.807921 TTTCCACTCTCTCTTTTGGTTATATTT 57.192 29.630 0.00 0.00 0.00 1.40
2202 7403 9.449719 TTCCACTCTCTCTTTTGGTTATATTTC 57.550 33.333 0.00 0.00 0.00 2.17
2204 7405 7.011482 CCACTCTCTCTTTTGGTTATATTTCCG 59.989 40.741 0.00 0.00 0.00 4.30
2205 7406 7.549488 CACTCTCTCTTTTGGTTATATTTCCGT 59.451 37.037 0.00 0.00 0.00 4.69
2206 7407 8.101419 ACTCTCTCTTTTGGTTATATTTCCGTT 58.899 33.333 0.00 0.00 0.00 4.44
2207 7408 9.595823 CTCTCTCTTTTGGTTATATTTCCGTTA 57.404 33.333 0.00 0.00 0.00 3.18
2210 7411 9.675464 TCTCTTTTGGTTATATTTCCGTTATGT 57.325 29.630 0.00 0.00 0.00 2.29
2211 7412 9.931210 CTCTTTTGGTTATATTTCCGTTATGTC 57.069 33.333 0.00 0.00 0.00 3.06
2213 7414 5.910637 TGGTTATATTTCCGTTATGTCGC 57.089 39.130 0.00 0.00 0.00 5.19
2216 7417 5.464389 GGTTATATTTCCGTTATGTCGCAGT 59.536 40.000 0.00 0.00 0.00 4.40
2218 7419 7.169645 GGTTATATTTCCGTTATGTCGCAGTAA 59.830 37.037 0.00 0.00 0.00 2.24
2219 7420 8.706035 GTTATATTTCCGTTATGTCGCAGTAAT 58.294 33.333 0.00 0.00 0.00 1.89
2221 7422 2.816689 TCCGTTATGTCGCAGTAATGG 58.183 47.619 0.00 0.00 38.00 3.16
2222 7423 2.427812 TCCGTTATGTCGCAGTAATGGA 59.572 45.455 9.15 9.15 41.40 3.41
2223 7424 3.119065 TCCGTTATGTCGCAGTAATGGAA 60.119 43.478 10.23 0.00 40.96 3.53
2225 7426 4.260212 CCGTTATGTCGCAGTAATGGAAAG 60.260 45.833 0.00 0.00 38.63 2.62
2228 7429 1.339631 TGTCGCAGTAATGGAAAGGGG 60.340 52.381 0.00 0.00 0.00 4.79
2230 7431 2.093341 GTCGCAGTAATGGAAAGGGGTA 60.093 50.000 0.00 0.00 0.00 3.69
2231 7432 2.572556 TCGCAGTAATGGAAAGGGGTAA 59.427 45.455 0.00 0.00 0.00 2.85
2233 7434 3.315191 CGCAGTAATGGAAAGGGGTAATG 59.685 47.826 0.00 0.00 0.00 1.90
2235 7436 3.636764 CAGTAATGGAAAGGGGTAATGCC 59.363 47.826 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
137 162 1.135094 ATGGGCTTCATCTCCGACAT 58.865 50.000 0.00 0.00 0.00 3.06
170 200 3.659089 CTCCCCGTCGGCGACAAAT 62.659 63.158 35.62 0.00 41.33 2.32
192 233 2.268920 CCCATCTCACCACCCACG 59.731 66.667 0.00 0.00 0.00 4.94
328 374 2.433664 CCACCGAACTACCGTGGC 60.434 66.667 0.00 0.00 0.00 5.01
432 491 2.676121 CAGACCCATTTGCGGCCA 60.676 61.111 2.24 0.00 0.00 5.36
527 586 1.826096 TCCATTTCGTCCATCACCGTA 59.174 47.619 0.00 0.00 0.00 4.02
535 594 1.452110 CAGCACATCCATTTCGTCCA 58.548 50.000 0.00 0.00 0.00 4.02
550 613 1.416030 TGTGTAAGAGCAACTCCAGCA 59.584 47.619 0.00 0.00 0.00 4.41
618 1900 1.450312 GACCAGACCAATCCCGCAG 60.450 63.158 0.00 0.00 0.00 5.18
624 1906 0.183731 GGGATGGGACCAGACCAATC 59.816 60.000 15.65 0.00 42.17 2.67
625 1907 0.552367 TGGGATGGGACCAGACCAAT 60.552 55.000 12.67 0.00 42.17 3.16
754 2039 1.600107 GGGTGCTTCCGGATACACA 59.400 57.895 28.55 13.85 37.00 3.72
847 2144 4.974645 TGTGTTGATGGTAGGAAGAGTT 57.025 40.909 0.00 0.00 0.00 3.01
895 2193 7.283127 TGAACAGAGCTAGTTTGATTTTCTTGT 59.717 33.333 5.59 0.00 0.00 3.16
937 2235 6.174720 AGTGAAAACTGACTTGTGATCCTA 57.825 37.500 0.00 0.00 0.00 2.94
954 2254 2.669569 GCGCTGCTGGGAGTGAAA 60.670 61.111 11.96 0.00 0.00 2.69
972 2273 5.978814 TCTCCTATACTTCTTGTTCTTGCC 58.021 41.667 0.00 0.00 0.00 4.52
999 2300 4.776322 TTCGCCGGACCAGCCATG 62.776 66.667 5.05 0.00 35.94 3.66
1050 2351 2.035442 GTCCTTGAGCGCTTCCACC 61.035 63.158 13.26 0.00 0.00 4.61
1056 2357 4.400961 GCCTGGTCCTTGAGCGCT 62.401 66.667 11.27 11.27 32.15 5.92
1080 2381 1.748879 GGCATAGTTCCAGCGGCAA 60.749 57.895 1.45 0.00 0.00 4.52
1236 2537 0.179062 CCCAGCAGCTGAGGTACATC 60.179 60.000 24.90 0.00 32.44 3.06
1277 2578 1.475392 CGAACACAACACCCCTAACCA 60.475 52.381 0.00 0.00 0.00 3.67
1286 2587 0.098728 AGCTGCAACGAACACAACAC 59.901 50.000 1.02 0.00 0.00 3.32
1304 2605 5.966636 TGTCGCATAAGTATAAGCACAAG 57.033 39.130 0.00 0.00 0.00 3.16
1315 2616 1.280710 TCATGGGGTTGTCGCATAAGT 59.719 47.619 0.00 0.00 45.64 2.24
1317 2618 1.680555 GGTCATGGGGTTGTCGCATAA 60.681 52.381 0.00 0.00 45.64 1.90
1318 2619 0.107410 GGTCATGGGGTTGTCGCATA 60.107 55.000 0.00 0.00 45.64 3.14
1320 2621 2.033448 GGTCATGGGGTTGTCGCA 59.967 61.111 0.00 0.00 42.62 5.10
1323 2624 0.596082 CAAACGGTCATGGGGTTGTC 59.404 55.000 0.00 0.00 0.00 3.18
1325 2626 1.898902 TACAAACGGTCATGGGGTTG 58.101 50.000 8.07 8.07 0.00 3.77
1326 2627 2.660670 TTACAAACGGTCATGGGGTT 57.339 45.000 0.00 0.00 0.00 4.11
1327 2628 2.660670 TTTACAAACGGTCATGGGGT 57.339 45.000 0.00 0.00 0.00 4.95
1330 2631 4.155099 TGCTGTATTTACAAACGGTCATGG 59.845 41.667 0.00 0.00 35.50 3.66
1333 2634 3.184783 CGTGCTGTATTTACAAACGGTCA 59.815 43.478 13.66 0.00 40.10 4.02
1335 2636 3.391965 TCGTGCTGTATTTACAAACGGT 58.608 40.909 18.10 0.00 42.14 4.83
1337 2638 5.198116 TCATCGTGCTGTATTTACAAACG 57.802 39.130 14.67 14.67 42.70 3.60
1341 2642 6.279882 TCATCATCATCGTGCTGTATTTACA 58.720 36.000 0.00 0.00 34.56 2.41
1342 2643 6.769608 TCATCATCATCGTGCTGTATTTAC 57.230 37.500 0.00 0.00 0.00 2.01
1343 2644 7.153985 TCATCATCATCATCGTGCTGTATTTA 58.846 34.615 0.00 0.00 0.00 1.40
1344 2645 5.993441 TCATCATCATCATCGTGCTGTATTT 59.007 36.000 0.00 0.00 0.00 1.40
1345 2646 5.544650 TCATCATCATCATCGTGCTGTATT 58.455 37.500 0.00 0.00 0.00 1.89
1346 2647 5.143376 TCATCATCATCATCGTGCTGTAT 57.857 39.130 0.00 0.00 0.00 2.29
1347 2648 4.589216 TCATCATCATCATCGTGCTGTA 57.411 40.909 0.00 0.00 0.00 2.74
1348 2649 3.464111 TCATCATCATCATCGTGCTGT 57.536 42.857 0.00 0.00 0.00 4.40
1351 2652 5.352643 TTTCATCATCATCATCATCGTGC 57.647 39.130 0.00 0.00 0.00 5.34
1352 2653 8.797266 AAATTTTCATCATCATCATCATCGTG 57.203 30.769 0.00 0.00 0.00 4.35
1355 2656 7.061905 GCCGAAATTTTCATCATCATCATCATC 59.938 37.037 9.66 0.00 0.00 2.92
1356 2657 6.866770 GCCGAAATTTTCATCATCATCATCAT 59.133 34.615 9.66 0.00 0.00 2.45
1357 2658 6.040054 AGCCGAAATTTTCATCATCATCATCA 59.960 34.615 9.66 0.00 0.00 3.07
1358 2659 6.444633 AGCCGAAATTTTCATCATCATCATC 58.555 36.000 9.66 0.00 0.00 2.92
1359 2660 6.401047 AGCCGAAATTTTCATCATCATCAT 57.599 33.333 9.66 0.00 0.00 2.45
1360 2661 5.840243 AGCCGAAATTTTCATCATCATCA 57.160 34.783 9.66 0.00 0.00 3.07
1362 2663 7.514784 TCATAGCCGAAATTTTCATCATCAT 57.485 32.000 9.66 0.00 0.00 2.45
1395 2788 1.985159 AGAACATGCACAAGGAGGGTA 59.015 47.619 0.00 0.00 0.00 3.69
1443 2836 3.132289 TCCTCTCTTCACAAACGTCAACT 59.868 43.478 0.00 0.00 0.00 3.16
1471 2894 5.242434 TGTATTCTGTATGCCTCGTTTTGT 58.758 37.500 0.00 0.00 0.00 2.83
1501 2931 2.301870 TGTTCGGTACAGGAAGCTGAAT 59.698 45.455 0.00 0.00 31.68 2.57
1536 2966 0.906775 CCTGTTCTACCCGGCCTTTA 59.093 55.000 0.00 0.00 0.00 1.85
1542 2972 2.666098 CCACCCCTGTTCTACCCGG 61.666 68.421 0.00 0.00 0.00 5.73
1543 2973 1.486145 AACCACCCCTGTTCTACCCG 61.486 60.000 0.00 0.00 0.00 5.28
1544 2974 0.037734 CAACCACCCCTGTTCTACCC 59.962 60.000 0.00 0.00 0.00 3.69
1545 2975 1.061546 TCAACCACCCCTGTTCTACC 58.938 55.000 0.00 0.00 0.00 3.18
1558 5773 2.159099 GGTGTATCGCTGAGATCAACCA 60.159 50.000 15.72 1.57 41.27 3.67
1560 5775 2.474816 GGGTGTATCGCTGAGATCAAC 58.525 52.381 0.00 0.00 40.66 3.18
1562 5777 0.668535 CGGGTGTATCGCTGAGATCA 59.331 55.000 0.00 0.00 40.66 2.92
1633 5854 2.437359 GCCACCTCTTGCAGCGAT 60.437 61.111 0.00 0.00 0.00 4.58
1644 5865 1.794714 ATAATCTCTGACGGCCACCT 58.205 50.000 2.24 0.00 0.00 4.00
1654 5875 8.506437 TCAAAGTACACAAAGCAATAATCTCTG 58.494 33.333 0.00 0.00 0.00 3.35
1664 5885 4.460263 ACTCCATCAAAGTACACAAAGCA 58.540 39.130 0.00 0.00 0.00 3.91
1725 5985 4.916249 GCAGAGCAAAGAAATTCAGAACAG 59.084 41.667 0.00 0.00 0.00 3.16
1797 6116 5.321959 ACTATGTGTGTCTCACTCTGATG 57.678 43.478 6.60 0.00 46.27 3.07
1798 6117 4.400884 GGACTATGTGTGTCTCACTCTGAT 59.599 45.833 6.60 0.00 46.27 2.90
1816 6135 6.098017 GCGCTTCTAACTAAAAAGAGGACTA 58.902 40.000 0.00 0.00 0.00 2.59
1817 6136 4.930405 GCGCTTCTAACTAAAAAGAGGACT 59.070 41.667 0.00 0.00 0.00 3.85
1819 6138 3.924686 CGCGCTTCTAACTAAAAAGAGGA 59.075 43.478 5.56 0.00 0.00 3.71
1825 6144 0.717224 CGGCGCGCTTCTAACTAAAA 59.283 50.000 32.29 0.00 0.00 1.52
1826 6145 0.388907 ACGGCGCGCTTCTAACTAAA 60.389 50.000 32.29 0.00 0.00 1.85
1829 6148 2.203972 TACACGGCGCGCTTCTAACT 62.204 55.000 32.29 9.53 0.00 2.24
1830 6149 1.346378 TTACACGGCGCGCTTCTAAC 61.346 55.000 32.29 12.20 0.00 2.34
1836 6155 0.303493 CATATTTTACACGGCGCGCT 59.697 50.000 32.29 14.07 0.00 5.92
1837 6156 1.259544 GCATATTTTACACGGCGCGC 61.260 55.000 25.94 25.94 0.00 6.86
1849 6168 2.849880 AAGCATTCGTGCGCATATTT 57.150 40.000 15.91 0.00 40.27 1.40
1863 6182 1.741706 CGTCTGCTCATCCAAAAGCAT 59.258 47.619 0.00 0.00 46.69 3.79
1864 6183 1.159285 CGTCTGCTCATCCAAAAGCA 58.841 50.000 0.00 0.00 45.83 3.91
1865 6184 0.449388 CCGTCTGCTCATCCAAAAGC 59.551 55.000 0.00 0.00 39.02 3.51
1867 6186 1.071542 TGACCGTCTGCTCATCCAAAA 59.928 47.619 0.00 0.00 0.00 2.44
1868 6187 0.684535 TGACCGTCTGCTCATCCAAA 59.315 50.000 0.00 0.00 0.00 3.28
1869 6188 0.904649 ATGACCGTCTGCTCATCCAA 59.095 50.000 0.00 0.00 0.00 3.53
1870 6189 0.176449 CATGACCGTCTGCTCATCCA 59.824 55.000 0.00 0.00 0.00 3.41
1871 6190 0.531532 CCATGACCGTCTGCTCATCC 60.532 60.000 0.00 0.00 0.00 3.51
1874 6193 1.293179 CACCATGACCGTCTGCTCA 59.707 57.895 0.00 0.00 0.00 4.26
1877 6196 1.005037 TGACACCATGACCGTCTGC 60.005 57.895 0.00 0.00 0.00 4.26
1878 6197 0.390340 CCTGACACCATGACCGTCTG 60.390 60.000 0.00 1.95 0.00 3.51
1880 6199 0.389948 GTCCTGACACCATGACCGTC 60.390 60.000 0.00 0.00 33.54 4.79
1881 6200 1.671742 GTCCTGACACCATGACCGT 59.328 57.895 0.00 0.00 33.54 4.83
1882 6201 1.079127 GGTCCTGACACCATGACCG 60.079 63.158 0.00 0.00 44.33 4.79
1884 6203 1.079127 CGGGTCCTGACACCATGAC 60.079 63.158 0.00 0.00 38.32 3.06
1900 6219 2.046892 CAGTGTCTGCCCTTCCGG 60.047 66.667 0.00 0.00 0.00 5.14
1909 6228 2.601398 CGGTGCTGTGCAGTGTCTG 61.601 63.158 0.00 0.00 40.08 3.51
1910 6229 2.280389 CGGTGCTGTGCAGTGTCT 60.280 61.111 0.00 0.00 40.08 3.41
1911 6230 3.349006 CCGGTGCTGTGCAGTGTC 61.349 66.667 0.00 0.00 40.08 3.67
1912 6231 4.935495 CCCGGTGCTGTGCAGTGT 62.935 66.667 0.00 0.00 40.08 3.55
1913 6232 4.624364 TCCCGGTGCTGTGCAGTG 62.624 66.667 0.00 0.00 40.08 3.66
1919 6238 3.991051 CTGTCGTCCCGGTGCTGT 61.991 66.667 0.00 0.00 0.00 4.40
1923 6242 4.778415 CTCGCTGTCGTCCCGGTG 62.778 72.222 0.00 0.00 36.96 4.94
1925 6244 4.180946 CTCTCGCTGTCGTCCCGG 62.181 72.222 0.00 0.00 36.96 5.73
1926 6245 2.473760 ATCTCTCGCTGTCGTCCCG 61.474 63.158 0.00 0.00 36.96 5.14
1928 6247 1.587613 GCATCTCTCGCTGTCGTCC 60.588 63.158 0.00 0.00 36.96 4.79
1943 7139 1.002868 AGCTCACTTTGCTCCGCAT 60.003 52.632 0.00 0.00 38.76 4.73
1954 7150 3.230115 GCTTTCAGCAGAGCTCACT 57.770 52.632 17.77 10.11 41.89 3.41
1963 7159 3.690167 AGGATACCTGGTGCTTTCAGCA 61.690 50.000 10.23 0.00 46.54 4.41
1965 7161 3.706594 TCTAGGATACCTGGTGCTTTCAG 59.293 47.826 10.23 0.00 33.63 3.02
1966 7162 3.719871 TCTAGGATACCTGGTGCTTTCA 58.280 45.455 10.23 0.00 33.63 2.69
1969 7170 4.324331 GGTTTTCTAGGATACCTGGTGCTT 60.324 45.833 10.23 0.40 33.63 3.91
1976 7177 2.158943 GCGCTGGTTTTCTAGGATACCT 60.159 50.000 11.52 0.00 37.71 3.08
1983 7184 2.750888 GCGGGCGCTGGTTTTCTAG 61.751 63.158 7.64 0.00 38.26 2.43
1984 7185 2.744709 GCGGGCGCTGGTTTTCTA 60.745 61.111 7.64 0.00 38.26 2.10
1986 7187 4.404654 CTGCGGGCGCTGGTTTTC 62.405 66.667 7.64 0.00 42.51 2.29
2000 7201 3.903932 GAGCAAAACAGGCGGCTGC 62.904 63.158 36.06 23.77 36.59 5.25
2002 7203 2.985847 GGAGCAAAACAGGCGGCT 60.986 61.111 5.25 5.25 39.75 5.52
2005 7206 4.404654 GCCGGAGCAAAACAGGCG 62.405 66.667 5.05 0.00 38.59 5.52
2019 7220 3.488047 CGGGGTTATATACGTGATAGCCG 60.488 52.174 14.71 0.00 32.45 5.52
2024 7225 2.827921 GGGACGGGGTTATATACGTGAT 59.172 50.000 0.00 0.00 39.95 3.06
2027 7228 1.963515 GTGGGACGGGGTTATATACGT 59.036 52.381 0.00 0.00 42.88 3.57
2029 7230 2.564504 GGAGTGGGACGGGGTTATATAC 59.435 54.545 0.00 0.00 0.00 1.47
2041 7242 2.158579 TGGTAAAAAGTGGGAGTGGGAC 60.159 50.000 0.00 0.00 0.00 4.46
2042 7243 2.136863 TGGTAAAAAGTGGGAGTGGGA 58.863 47.619 0.00 0.00 0.00 4.37
2044 7245 3.292460 TGTTGGTAAAAAGTGGGAGTGG 58.708 45.455 0.00 0.00 0.00 4.00
2046 7247 5.659079 TGAATTGTTGGTAAAAAGTGGGAGT 59.341 36.000 0.00 0.00 0.00 3.85
2047 7248 6.155475 TGAATTGTTGGTAAAAAGTGGGAG 57.845 37.500 0.00 0.00 0.00 4.30
2048 7249 6.546428 TTGAATTGTTGGTAAAAAGTGGGA 57.454 33.333 0.00 0.00 0.00 4.37
2050 7251 6.531948 TCGTTTGAATTGTTGGTAAAAAGTGG 59.468 34.615 0.00 0.00 0.00 4.00
2052 7253 7.599245 TGTTCGTTTGAATTGTTGGTAAAAAGT 59.401 29.630 0.00 0.00 36.29 2.66
2054 7255 7.884816 TGTTCGTTTGAATTGTTGGTAAAAA 57.115 28.000 0.00 0.00 36.29 1.94
2056 7257 7.258441 TGATGTTCGTTTGAATTGTTGGTAAA 58.742 30.769 0.00 0.00 36.29 2.01
2057 7258 6.796426 TGATGTTCGTTTGAATTGTTGGTAA 58.204 32.000 0.00 0.00 36.29 2.85
2058 7259 6.378710 TGATGTTCGTTTGAATTGTTGGTA 57.621 33.333 0.00 0.00 36.29 3.25
2060 7261 6.768029 ATTGATGTTCGTTTGAATTGTTGG 57.232 33.333 0.00 0.00 36.29 3.77
2066 7267 6.969366 TCACTGAATTGATGTTCGTTTGAAT 58.031 32.000 0.00 0.00 36.29 2.57
2076 7277 8.316946 TCTTGAACTATCTCACTGAATTGATGT 58.683 33.333 0.00 0.00 0.00 3.06
2187 7388 7.375017 GCGACATAACGGAAATATAACCAAAAG 59.625 37.037 0.00 0.00 0.00 2.27
2188 7389 7.148289 TGCGACATAACGGAAATATAACCAAAA 60.148 33.333 0.00 0.00 0.00 2.44
2189 7390 6.315642 TGCGACATAACGGAAATATAACCAAA 59.684 34.615 0.00 0.00 0.00 3.28
2190 7391 5.816258 TGCGACATAACGGAAATATAACCAA 59.184 36.000 0.00 0.00 0.00 3.67
2191 7392 5.358090 TGCGACATAACGGAAATATAACCA 58.642 37.500 0.00 0.00 0.00 3.67
2192 7393 5.464389 ACTGCGACATAACGGAAATATAACC 59.536 40.000 0.00 0.00 32.77 2.85
2194 7395 8.705134 CATTACTGCGACATAACGGAAATATAA 58.295 33.333 0.00 0.00 32.77 0.98
2195 7396 7.329962 CCATTACTGCGACATAACGGAAATATA 59.670 37.037 0.00 0.00 32.77 0.86
2196 7397 6.147164 CCATTACTGCGACATAACGGAAATAT 59.853 38.462 0.00 0.00 32.77 1.28
2197 7398 5.464057 CCATTACTGCGACATAACGGAAATA 59.536 40.000 0.00 0.00 32.77 1.40
2199 7400 3.619483 CCATTACTGCGACATAACGGAAA 59.381 43.478 0.00 0.00 32.77 3.13
2200 7401 3.119065 TCCATTACTGCGACATAACGGAA 60.119 43.478 0.00 0.00 32.77 4.30
2201 7402 2.427812 TCCATTACTGCGACATAACGGA 59.572 45.455 0.00 0.00 0.00 4.69
2202 7403 2.816689 TCCATTACTGCGACATAACGG 58.183 47.619 0.00 0.00 0.00 4.44
2204 7405 4.035208 CCCTTTCCATTACTGCGACATAAC 59.965 45.833 0.00 0.00 0.00 1.89
2205 7406 4.196193 CCCTTTCCATTACTGCGACATAA 58.804 43.478 0.00 0.00 0.00 1.90
2206 7407 3.433031 CCCCTTTCCATTACTGCGACATA 60.433 47.826 0.00 0.00 0.00 2.29
2207 7408 2.643551 CCCTTTCCATTACTGCGACAT 58.356 47.619 0.00 0.00 0.00 3.06
2208 7409 1.339631 CCCCTTTCCATTACTGCGACA 60.340 52.381 0.00 0.00 0.00 4.35
2210 7411 0.988832 ACCCCTTTCCATTACTGCGA 59.011 50.000 0.00 0.00 0.00 5.10
2211 7412 2.702592 TACCCCTTTCCATTACTGCG 57.297 50.000 0.00 0.00 0.00 5.18
2213 7414 3.636764 GGCATTACCCCTTTCCATTACTG 59.363 47.826 0.00 0.00 0.00 2.74



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.