Multiple sequence alignment - TraesCS2D01G533700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G533700 chr2D 100.000 2653 0 0 1 2653 618002945 618005597 0.000000e+00 4900.0
1 TraesCS2D01G533700 chr2D 93.896 557 26 1 2105 2653 618056371 618056927 0.000000e+00 833.0
2 TraesCS2D01G533700 chr2D 89.730 555 45 4 2105 2650 651566806 651567357 0.000000e+00 699.0
3 TraesCS2D01G533700 chr2D 89.550 555 46 4 2105 2650 651572118 651572669 0.000000e+00 693.0
4 TraesCS2D01G533700 chr2D 82.353 544 60 16 938 1480 618060523 618061031 8.720000e-120 440.0
5 TraesCS2D01G533700 chr2D 85.714 91 3 7 2561 2642 530983183 530983094 1.310000e-13 87.9
6 TraesCS2D01G533700 chr2D 92.453 53 4 0 1385 1437 618096206 618096258 2.830000e-10 76.8
7 TraesCS2D01G533700 chr2A 84.699 732 85 13 793 1512 748550262 748550978 0.000000e+00 706.0
8 TraesCS2D01G533700 chr2A 78.919 1129 132 47 395 1480 748534242 748535307 0.000000e+00 669.0
9 TraesCS2D01G533700 chr2A 87.885 520 51 4 936 1449 748542101 748542614 3.780000e-168 601.0
10 TraesCS2D01G533700 chr2A 95.157 351 16 1 383 733 748528885 748529234 1.070000e-153 553.0
11 TraesCS2D01G533700 chr2A 93.009 329 22 1 1775 2102 748553560 748553888 1.850000e-131 479.0
12 TraesCS2D01G533700 chr2A 83.821 513 56 13 943 1453 748558108 748558595 1.860000e-126 462.0
13 TraesCS2D01G533700 chr2A 83.628 452 50 10 1011 1453 748559858 748560294 1.140000e-108 403.0
14 TraesCS2D01G533700 chr2A 83.416 404 48 13 1043 1435 748775898 748776293 9.030000e-95 357.0
15 TraesCS2D01G533700 chr2A 84.127 315 29 10 941 1254 748529321 748529615 4.320000e-73 285.0
16 TraesCS2D01G533700 chr2A 89.908 218 14 3 1520 1731 748553352 748553567 9.360000e-70 274.0
17 TraesCS2D01G533700 chr2A 77.298 533 55 34 398 894 748541591 748542093 1.220000e-63 254.0
18 TraesCS2D01G533700 chr2A 86.473 207 22 4 402 608 748549829 748550029 3.440000e-54 222.0
19 TraesCS2D01G533700 chr2A 89.130 92 8 2 936 1027 748685116 748685205 2.160000e-21 113.0
20 TraesCS2D01G533700 chr2A 83.495 103 9 3 1528 1622 723125161 723125263 3.640000e-14 89.8
21 TraesCS2D01G533700 chr7D 89.892 554 45 3 2105 2649 494370774 494371325 0.000000e+00 702.0
22 TraesCS2D01G533700 chr7D 89.027 565 53 3 2094 2650 507339600 507340163 0.000000e+00 691.0
23 TraesCS2D01G533700 chr7D 87.884 553 53 6 2105 2650 490034091 490034636 2.880000e-179 638.0
24 TraesCS2D01G533700 chr7D 81.031 543 80 11 2123 2653 115516718 115516187 6.830000e-111 411.0
25 TraesCS2D01G533700 chr1D 89.855 552 46 4 2110 2652 96427503 96426953 0.000000e+00 701.0
26 TraesCS2D01G533700 chr1D 91.146 384 33 1 1 383 418309958 418309575 1.090000e-143 520.0
27 TraesCS2D01G533700 chr2B 83.919 740 80 17 715 1453 754004237 754004938 0.000000e+00 671.0
28 TraesCS2D01G533700 chr2B 84.268 642 61 30 936 1565 754015762 754016375 8.180000e-165 590.0
29 TraesCS2D01G533700 chr2B 83.153 647 69 10 838 1478 754010674 754011286 2.980000e-154 555.0
30 TraesCS2D01G533700 chr2B 80.192 520 70 16 941 1453 753996905 753997398 2.510000e-95 359.0
31 TraesCS2D01G533700 chr2B 89.100 211 18 4 398 608 753987768 753987973 9.420000e-65 257.0
32 TraesCS2D01G533700 chr2B 84.762 210 16 9 395 603 754002091 754002285 2.080000e-46 196.0
33 TraesCS2D01G533700 chr2B 95.283 106 5 0 789 894 753988199 753988304 4.540000e-38 169.0
34 TraesCS2D01G533700 chr2B 85.455 165 12 6 601 756 754010475 754010636 7.600000e-36 161.0
35 TraesCS2D01G533700 chr2B 88.550 131 14 1 478 608 754010314 754010443 9.830000e-35 158.0
36 TraesCS2D01G533700 chr2B 94.253 87 5 0 1361 1447 754550505 754550591 1.660000e-27 134.0
37 TraesCS2D01G533700 chr2B 83.495 103 9 3 1528 1622 754550641 754550743 3.640000e-14 89.8
38 TraesCS2D01G533700 chr3D 88.551 559 53 8 2105 2653 134324668 134324111 0.000000e+00 667.0
39 TraesCS2D01G533700 chr3D 87.835 559 57 8 2105 2653 134293159 134292602 0.000000e+00 645.0
40 TraesCS2D01G533700 chr3D 90.979 388 28 7 1 383 610095101 610094716 1.410000e-142 516.0
41 TraesCS2D01G533700 chr3D 84.694 98 5 7 2559 2647 361462326 361462422 3.640000e-14 89.8
42 TraesCS2D01G533700 chr3B 91.003 389 33 2 1 388 27479778 27479391 8.410000e-145 523.0
43 TraesCS2D01G533700 chr3B 90.840 393 26 7 1 387 31766777 31766389 3.910000e-143 518.0
44 TraesCS2D01G533700 chr3B 88.421 95 9 1 1352 1444 43733478 43733572 2.160000e-21 113.0
45 TraesCS2D01G533700 chr3B 86.517 89 2 8 2564 2643 206152877 206152790 3.640000e-14 89.8
46 TraesCS2D01G533700 chr6A 91.192 386 31 2 1 383 422818940 422819325 3.030000e-144 521.0
47 TraesCS2D01G533700 chr6A 90.769 390 30 5 1 385 614958623 614959011 1.410000e-142 516.0
48 TraesCS2D01G533700 chr6D 91.146 384 32 2 1 383 328750398 328750780 1.090000e-143 520.0
49 TraesCS2D01G533700 chr6D 90.979 388 28 5 1 383 76060144 76060529 1.410000e-142 516.0
50 TraesCS2D01G533700 chr6D 90.909 385 31 3 1 383 103031584 103031202 5.060000e-142 514.0
51 TraesCS2D01G533700 chr4D 83.750 560 65 10 2104 2650 188902281 188902827 8.470000e-140 507.0
52 TraesCS2D01G533700 chr4D 83.601 561 61 15 2105 2650 145271684 145272228 5.100000e-137 497.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G533700 chr2D 618002945 618005597 2652 False 4900.000000 4900 100.000000 1 2653 1 chr2D.!!$F1 2652
1 TraesCS2D01G533700 chr2D 651566806 651567357 551 False 699.000000 699 89.730000 2105 2650 1 chr2D.!!$F3 545
2 TraesCS2D01G533700 chr2D 651572118 651572669 551 False 693.000000 693 89.550000 2105 2650 1 chr2D.!!$F4 545
3 TraesCS2D01G533700 chr2D 618056371 618061031 4660 False 636.500000 833 88.124500 938 2653 2 chr2D.!!$F5 1715
4 TraesCS2D01G533700 chr2A 748534242 748535307 1065 False 669.000000 669 78.919000 395 1480 1 chr2A.!!$F2 1085
5 TraesCS2D01G533700 chr2A 748558108 748560294 2186 False 432.500000 462 83.724500 943 1453 2 chr2A.!!$F8 510
6 TraesCS2D01G533700 chr2A 748541591 748542614 1023 False 427.500000 601 82.591500 398 1449 2 chr2A.!!$F6 1051
7 TraesCS2D01G533700 chr2A 748549829 748553888 4059 False 420.250000 706 88.522250 402 2102 4 chr2A.!!$F7 1700
8 TraesCS2D01G533700 chr2A 748528885 748529615 730 False 419.000000 553 89.642000 383 1254 2 chr2A.!!$F5 871
9 TraesCS2D01G533700 chr7D 494370774 494371325 551 False 702.000000 702 89.892000 2105 2649 1 chr7D.!!$F2 544
10 TraesCS2D01G533700 chr7D 507339600 507340163 563 False 691.000000 691 89.027000 2094 2650 1 chr7D.!!$F3 556
11 TraesCS2D01G533700 chr7D 490034091 490034636 545 False 638.000000 638 87.884000 2105 2650 1 chr7D.!!$F1 545
12 TraesCS2D01G533700 chr7D 115516187 115516718 531 True 411.000000 411 81.031000 2123 2653 1 chr7D.!!$R1 530
13 TraesCS2D01G533700 chr1D 96426953 96427503 550 True 701.000000 701 89.855000 2110 2652 1 chr1D.!!$R1 542
14 TraesCS2D01G533700 chr2B 754015762 754016375 613 False 590.000000 590 84.268000 936 1565 1 chr2B.!!$F2 629
15 TraesCS2D01G533700 chr2B 754002091 754004938 2847 False 433.500000 671 84.340500 395 1453 2 chr2B.!!$F4 1058
16 TraesCS2D01G533700 chr2B 754010314 754011286 972 False 291.333333 555 85.719333 478 1478 3 chr2B.!!$F5 1000
17 TraesCS2D01G533700 chr2B 753987768 753988304 536 False 213.000000 257 92.191500 398 894 2 chr2B.!!$F3 496
18 TraesCS2D01G533700 chr3D 134324111 134324668 557 True 667.000000 667 88.551000 2105 2653 1 chr3D.!!$R2 548
19 TraesCS2D01G533700 chr3D 134292602 134293159 557 True 645.000000 645 87.835000 2105 2653 1 chr3D.!!$R1 548
20 TraesCS2D01G533700 chr4D 188902281 188902827 546 False 507.000000 507 83.750000 2104 2650 1 chr4D.!!$F2 546
21 TraesCS2D01G533700 chr4D 145271684 145272228 544 False 497.000000 497 83.601000 2105 2650 1 chr4D.!!$F1 545

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
208 209 0.035036 GGCGGCTAGGGTTTAGGATC 59.965 60.0 0.0 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1761 6224 0.104304 GGTGTATCGCCAAGATCCGT 59.896 55.0 0.0 0.0 40.66 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.240230 AAAAGAAACCGCGCGATCA 58.760 47.368 34.63 0.00 0.00 2.92
19 20 0.589223 AAAAGAAACCGCGCGATCAA 59.411 45.000 34.63 0.00 0.00 2.57
20 21 0.165944 AAAGAAACCGCGCGATCAAG 59.834 50.000 34.63 17.10 0.00 3.02
21 22 0.669318 AAGAAACCGCGCGATCAAGA 60.669 50.000 34.63 0.00 0.00 3.02
22 23 0.460284 AGAAACCGCGCGATCAAGAT 60.460 50.000 34.63 9.73 0.00 2.40
23 24 0.315382 GAAACCGCGCGATCAAGATG 60.315 55.000 34.63 14.59 0.00 2.90
24 25 0.739462 AAACCGCGCGATCAAGATGA 60.739 50.000 34.63 0.00 0.00 2.92
25 26 1.421410 AACCGCGCGATCAAGATGAC 61.421 55.000 34.63 0.00 0.00 3.06
26 27 2.589492 CCGCGCGATCAAGATGACC 61.589 63.158 34.63 0.00 0.00 4.02
27 28 2.920964 CGCGCGATCAAGATGACCG 61.921 63.158 28.94 0.00 0.00 4.79
28 29 2.589492 GCGCGATCAAGATGACCGG 61.589 63.158 12.10 0.00 0.00 5.28
29 30 2.589492 CGCGATCAAGATGACCGGC 61.589 63.158 0.00 0.00 0.00 6.13
30 31 2.589492 GCGATCAAGATGACCGGCG 61.589 63.158 0.00 0.00 0.00 6.46
31 32 1.951130 CGATCAAGATGACCGGCGG 60.951 63.158 27.06 27.06 0.00 6.13
32 33 1.595382 GATCAAGATGACCGGCGGG 60.595 63.158 31.78 12.53 40.11 6.13
33 34 2.028125 GATCAAGATGACCGGCGGGA 62.028 60.000 31.78 17.07 36.97 5.14
34 35 2.032860 ATCAAGATGACCGGCGGGAG 62.033 60.000 31.78 11.18 36.97 4.30
35 36 2.363795 AAGATGACCGGCGGGAGA 60.364 61.111 31.78 13.80 36.97 3.71
36 37 2.427245 AAGATGACCGGCGGGAGAG 61.427 63.158 31.78 4.45 36.97 3.20
37 38 2.833582 GATGACCGGCGGGAGAGA 60.834 66.667 31.78 9.02 36.97 3.10
38 39 2.835431 ATGACCGGCGGGAGAGAG 60.835 66.667 31.78 2.75 36.97 3.20
39 40 3.360423 ATGACCGGCGGGAGAGAGA 62.360 63.158 31.78 5.55 36.97 3.10
40 41 2.754658 GACCGGCGGGAGAGAGAA 60.755 66.667 31.78 0.00 36.97 2.87
41 42 2.283676 ACCGGCGGGAGAGAGAAA 60.284 61.111 31.78 0.00 36.97 2.52
42 43 1.885163 GACCGGCGGGAGAGAGAAAA 61.885 60.000 31.78 0.00 36.97 2.29
43 44 1.448013 CCGGCGGGAGAGAGAAAAC 60.448 63.158 20.56 0.00 34.06 2.43
44 45 1.448013 CGGCGGGAGAGAGAAAACC 60.448 63.158 0.00 0.00 0.00 3.27
45 46 1.889530 CGGCGGGAGAGAGAAAACCT 61.890 60.000 0.00 0.00 0.00 3.50
46 47 0.108089 GGCGGGAGAGAGAAAACCTC 60.108 60.000 0.00 0.00 42.28 3.85
47 48 0.458716 GCGGGAGAGAGAAAACCTCG 60.459 60.000 0.00 0.00 46.49 4.63
48 49 0.173708 CGGGAGAGAGAAAACCTCGG 59.826 60.000 0.00 0.00 46.49 4.63
49 50 1.558233 GGGAGAGAGAAAACCTCGGA 58.442 55.000 0.00 0.00 46.49 4.55
50 51 1.478916 GGGAGAGAGAAAACCTCGGAG 59.521 57.143 0.00 0.00 46.49 4.63
51 52 1.134936 GGAGAGAGAAAACCTCGGAGC 60.135 57.143 0.00 0.00 46.49 4.70
52 53 1.546476 GAGAGAGAAAACCTCGGAGCA 59.454 52.381 0.00 0.00 46.49 4.26
53 54 1.971357 AGAGAGAAAACCTCGGAGCAA 59.029 47.619 0.00 0.00 46.49 3.91
54 55 2.028567 AGAGAGAAAACCTCGGAGCAAG 60.029 50.000 0.00 0.00 46.49 4.01
55 56 1.971357 AGAGAAAACCTCGGAGCAAGA 59.029 47.619 0.00 0.00 46.49 3.02
56 57 2.070028 GAGAAAACCTCGGAGCAAGAC 58.930 52.381 0.00 0.00 31.32 3.01
57 58 1.694696 AGAAAACCTCGGAGCAAGACT 59.305 47.619 0.00 0.00 0.00 3.24
58 59 2.070028 GAAAACCTCGGAGCAAGACTC 58.930 52.381 0.00 0.00 45.45 3.36
66 67 3.625745 GAGCAAGACTCGGGGAAAA 57.374 52.632 0.00 0.00 35.18 2.29
67 68 1.443802 GAGCAAGACTCGGGGAAAAG 58.556 55.000 0.00 0.00 35.18 2.27
68 69 1.002087 GAGCAAGACTCGGGGAAAAGA 59.998 52.381 0.00 0.00 35.18 2.52
69 70 1.157585 GCAAGACTCGGGGAAAAGAC 58.842 55.000 0.00 0.00 0.00 3.01
70 71 1.270893 GCAAGACTCGGGGAAAAGACT 60.271 52.381 0.00 0.00 0.00 3.24
71 72 2.689646 CAAGACTCGGGGAAAAGACTC 58.310 52.381 0.00 0.00 0.00 3.36
72 73 2.300437 CAAGACTCGGGGAAAAGACTCT 59.700 50.000 0.00 0.00 0.00 3.24
73 74 2.172679 AGACTCGGGGAAAAGACTCTC 58.827 52.381 0.00 0.00 0.00 3.20
74 75 2.172679 GACTCGGGGAAAAGACTCTCT 58.827 52.381 0.00 0.00 0.00 3.10
75 76 3.010361 AGACTCGGGGAAAAGACTCTCTA 59.990 47.826 0.00 0.00 0.00 2.43
76 77 3.762823 GACTCGGGGAAAAGACTCTCTAA 59.237 47.826 0.00 0.00 0.00 2.10
77 78 3.764972 ACTCGGGGAAAAGACTCTCTAAG 59.235 47.826 0.00 0.00 0.00 2.18
78 79 3.097614 TCGGGGAAAAGACTCTCTAAGG 58.902 50.000 0.00 0.00 0.00 2.69
79 80 2.418884 CGGGGAAAAGACTCTCTAAGGC 60.419 54.545 0.00 0.00 0.00 4.35
80 81 2.572104 GGGGAAAAGACTCTCTAAGGCA 59.428 50.000 0.00 0.00 34.25 4.75
81 82 3.369997 GGGGAAAAGACTCTCTAAGGCAG 60.370 52.174 0.00 0.00 34.25 4.85
82 83 3.266636 GGAAAAGACTCTCTAAGGCAGC 58.733 50.000 0.00 0.00 34.25 5.25
83 84 3.266636 GAAAAGACTCTCTAAGGCAGCC 58.733 50.000 1.84 1.84 34.25 4.85
84 85 1.944177 AAGACTCTCTAAGGCAGCCA 58.056 50.000 15.80 0.00 34.25 4.75
85 86 1.484038 AGACTCTCTAAGGCAGCCAG 58.516 55.000 15.80 2.82 34.25 4.85
86 87 1.190643 GACTCTCTAAGGCAGCCAGT 58.809 55.000 15.80 6.91 30.88 4.00
87 88 1.136110 GACTCTCTAAGGCAGCCAGTC 59.864 57.143 15.80 12.76 30.88 3.51
88 89 1.189752 CTCTCTAAGGCAGCCAGTCA 58.810 55.000 15.80 0.00 0.00 3.41
89 90 1.552337 CTCTCTAAGGCAGCCAGTCAA 59.448 52.381 15.80 0.00 0.00 3.18
90 91 1.276421 TCTCTAAGGCAGCCAGTCAAC 59.724 52.381 15.80 0.00 0.00 3.18
91 92 1.002430 CTCTAAGGCAGCCAGTCAACA 59.998 52.381 15.80 0.00 0.00 3.33
92 93 1.160137 CTAAGGCAGCCAGTCAACAC 58.840 55.000 15.80 0.00 0.00 3.32
93 94 0.602638 TAAGGCAGCCAGTCAACACG 60.603 55.000 15.80 0.00 0.00 4.49
94 95 2.280797 GGCAGCCAGTCAACACGA 60.281 61.111 6.55 0.00 0.00 4.35
95 96 2.607892 GGCAGCCAGTCAACACGAC 61.608 63.158 6.55 0.00 45.77 4.34
96 97 2.607892 GCAGCCAGTCAACACGACC 61.608 63.158 0.00 0.00 46.69 4.79
97 98 2.029073 AGCCAGTCAACACGACCG 59.971 61.111 0.00 0.00 46.69 4.79
98 99 3.041940 GCCAGTCAACACGACCGG 61.042 66.667 0.00 0.00 46.69 5.28
99 100 3.041940 CCAGTCAACACGACCGGC 61.042 66.667 0.00 0.00 46.69 6.13
100 101 3.403057 CAGTCAACACGACCGGCG 61.403 66.667 15.25 15.25 46.69 6.46
101 102 4.657824 AGTCAACACGACCGGCGG 62.658 66.667 27.06 27.06 46.69 6.13
102 103 4.651008 GTCAACACGACCGGCGGA 62.651 66.667 35.78 3.72 46.49 5.54
103 104 4.651008 TCAACACGACCGGCGGAC 62.651 66.667 35.78 26.64 46.49 4.79
114 115 2.968206 GGCGGACGAACACTAGGT 59.032 61.111 0.00 0.00 0.00 3.08
115 116 2.183409 GGCGGACGAACACTAGGTA 58.817 57.895 0.00 0.00 0.00 3.08
116 117 0.179153 GGCGGACGAACACTAGGTAC 60.179 60.000 0.00 0.00 0.00 3.34
117 118 0.522076 GCGGACGAACACTAGGTACG 60.522 60.000 0.00 0.00 40.85 3.67
118 119 0.097674 CGGACGAACACTAGGTACGG 59.902 60.000 0.00 0.00 34.46 4.02
119 120 0.453390 GGACGAACACTAGGTACGGG 59.547 60.000 0.00 0.00 0.00 5.28
120 121 0.179153 GACGAACACTAGGTACGGGC 60.179 60.000 0.00 0.00 0.00 6.13
121 122 1.226491 CGAACACTAGGTACGGGCG 60.226 63.158 0.00 0.00 0.00 6.13
122 123 1.647545 CGAACACTAGGTACGGGCGA 61.648 60.000 0.00 0.00 0.00 5.54
123 124 0.179153 GAACACTAGGTACGGGCGAC 60.179 60.000 0.00 0.00 0.00 5.19
156 157 2.029666 GGTCATGGAGGCCGATCG 59.970 66.667 8.51 8.51 28.17 3.69
157 158 2.663188 GTCATGGAGGCCGATCGC 60.663 66.667 10.32 5.23 0.00 4.58
184 185 4.988598 AGCGCACGGGTGTGGAAG 62.989 66.667 11.47 0.00 46.51 3.46
203 204 4.165486 GGCGGCGGCTAGGGTTTA 62.165 66.667 27.22 0.00 39.81 2.01
204 205 2.588034 GCGGCGGCTAGGGTTTAG 60.588 66.667 9.78 0.00 35.83 1.85
205 206 2.108362 CGGCGGCTAGGGTTTAGG 59.892 66.667 7.61 0.00 0.00 2.69
206 207 2.428925 CGGCGGCTAGGGTTTAGGA 61.429 63.158 7.61 0.00 0.00 2.94
207 208 1.755393 CGGCGGCTAGGGTTTAGGAT 61.755 60.000 7.61 0.00 0.00 3.24
208 209 0.035036 GGCGGCTAGGGTTTAGGATC 59.965 60.000 0.00 0.00 0.00 3.36
209 210 0.756903 GCGGCTAGGGTTTAGGATCA 59.243 55.000 0.00 0.00 0.00 2.92
210 211 1.140252 GCGGCTAGGGTTTAGGATCAA 59.860 52.381 0.00 0.00 0.00 2.57
211 212 2.835027 CGGCTAGGGTTTAGGATCAAC 58.165 52.381 0.00 0.00 0.00 3.18
212 213 2.434702 CGGCTAGGGTTTAGGATCAACT 59.565 50.000 0.00 0.00 0.00 3.16
213 214 3.118371 CGGCTAGGGTTTAGGATCAACTT 60.118 47.826 0.00 0.00 0.00 2.66
214 215 4.200092 GGCTAGGGTTTAGGATCAACTTG 58.800 47.826 0.00 0.00 0.00 3.16
215 216 3.628032 GCTAGGGTTTAGGATCAACTTGC 59.372 47.826 0.00 0.00 0.00 4.01
216 217 2.711542 AGGGTTTAGGATCAACTTGCG 58.288 47.619 0.00 0.00 0.00 4.85
217 218 2.304761 AGGGTTTAGGATCAACTTGCGA 59.695 45.455 0.00 0.00 0.00 5.10
218 219 3.054361 AGGGTTTAGGATCAACTTGCGAT 60.054 43.478 0.00 0.00 0.00 4.58
219 220 4.163458 AGGGTTTAGGATCAACTTGCGATA 59.837 41.667 0.00 0.00 0.00 2.92
220 221 4.511826 GGGTTTAGGATCAACTTGCGATAG 59.488 45.833 0.00 0.00 0.00 2.08
221 222 5.357257 GGTTTAGGATCAACTTGCGATAGA 58.643 41.667 0.00 0.00 39.76 1.98
222 223 5.992217 GGTTTAGGATCAACTTGCGATAGAT 59.008 40.000 0.00 0.00 39.76 1.98
223 224 7.152645 GGTTTAGGATCAACTTGCGATAGATA 58.847 38.462 0.00 0.00 39.76 1.98
224 225 7.819900 GGTTTAGGATCAACTTGCGATAGATAT 59.180 37.037 0.00 0.00 39.76 1.63
225 226 8.865001 GTTTAGGATCAACTTGCGATAGATATC 58.135 37.037 0.00 0.00 39.76 1.63
226 227 6.596309 AGGATCAACTTGCGATAGATATCA 57.404 37.500 5.32 0.00 39.76 2.15
227 228 7.180322 AGGATCAACTTGCGATAGATATCAT 57.820 36.000 5.32 0.00 39.76 2.45
228 229 7.040494 AGGATCAACTTGCGATAGATATCATG 58.960 38.462 5.32 0.00 39.76 3.07
229 230 6.815641 GGATCAACTTGCGATAGATATCATGT 59.184 38.462 5.32 0.00 39.76 3.21
230 231 7.332926 GGATCAACTTGCGATAGATATCATGTT 59.667 37.037 5.32 0.00 39.76 2.71
231 232 9.358872 GATCAACTTGCGATAGATATCATGTTA 57.641 33.333 5.32 0.00 39.76 2.41
232 233 8.748380 TCAACTTGCGATAGATATCATGTTAG 57.252 34.615 5.32 0.00 39.76 2.34
233 234 8.576442 TCAACTTGCGATAGATATCATGTTAGA 58.424 33.333 5.32 0.00 39.76 2.10
234 235 9.196552 CAACTTGCGATAGATATCATGTTAGAA 57.803 33.333 5.32 0.00 39.76 2.10
235 236 8.978564 ACTTGCGATAGATATCATGTTAGAAG 57.021 34.615 5.32 1.85 39.76 2.85
236 237 8.031864 ACTTGCGATAGATATCATGTTAGAAGG 58.968 37.037 5.32 0.00 39.76 3.46
237 238 6.867550 TGCGATAGATATCATGTTAGAAGGG 58.132 40.000 5.32 0.00 39.76 3.95
238 239 6.663523 TGCGATAGATATCATGTTAGAAGGGA 59.336 38.462 5.32 0.00 39.76 4.20
239 240 7.148000 TGCGATAGATATCATGTTAGAAGGGAG 60.148 40.741 5.32 0.00 39.76 4.30
240 241 7.067615 GCGATAGATATCATGTTAGAAGGGAGA 59.932 40.741 5.32 0.00 39.76 3.71
241 242 8.961634 CGATAGATATCATGTTAGAAGGGAGAA 58.038 37.037 5.32 0.00 39.76 2.87
244 245 7.972301 AGATATCATGTTAGAAGGGAGAAAGG 58.028 38.462 5.32 0.00 0.00 3.11
245 246 4.844349 TCATGTTAGAAGGGAGAAAGGG 57.156 45.455 0.00 0.00 0.00 3.95
246 247 4.435137 TCATGTTAGAAGGGAGAAAGGGA 58.565 43.478 0.00 0.00 0.00 4.20
247 248 5.039645 TCATGTTAGAAGGGAGAAAGGGAT 58.960 41.667 0.00 0.00 0.00 3.85
248 249 5.492524 TCATGTTAGAAGGGAGAAAGGGATT 59.507 40.000 0.00 0.00 0.00 3.01
249 250 5.860648 TGTTAGAAGGGAGAAAGGGATTT 57.139 39.130 0.00 0.00 0.00 2.17
250 251 5.570320 TGTTAGAAGGGAGAAAGGGATTTG 58.430 41.667 0.00 0.00 0.00 2.32
251 252 3.746792 AGAAGGGAGAAAGGGATTTGG 57.253 47.619 0.00 0.00 0.00 3.28
252 253 2.996742 AGAAGGGAGAAAGGGATTTGGT 59.003 45.455 0.00 0.00 0.00 3.67
253 254 2.907458 AGGGAGAAAGGGATTTGGTG 57.093 50.000 0.00 0.00 0.00 4.17
254 255 1.359130 AGGGAGAAAGGGATTTGGTGG 59.641 52.381 0.00 0.00 0.00 4.61
255 256 1.357761 GGGAGAAAGGGATTTGGTGGA 59.642 52.381 0.00 0.00 0.00 4.02
256 257 2.225267 GGGAGAAAGGGATTTGGTGGAA 60.225 50.000 0.00 0.00 0.00 3.53
257 258 3.566553 GGGAGAAAGGGATTTGGTGGAAT 60.567 47.826 0.00 0.00 0.00 3.01
258 259 4.325816 GGGAGAAAGGGATTTGGTGGAATA 60.326 45.833 0.00 0.00 0.00 1.75
259 260 4.889995 GGAGAAAGGGATTTGGTGGAATAG 59.110 45.833 0.00 0.00 0.00 1.73
260 261 5.510430 GAGAAAGGGATTTGGTGGAATAGT 58.490 41.667 0.00 0.00 0.00 2.12
261 262 5.903923 AGAAAGGGATTTGGTGGAATAGTT 58.096 37.500 0.00 0.00 0.00 2.24
262 263 5.716703 AGAAAGGGATTTGGTGGAATAGTTG 59.283 40.000 0.00 0.00 0.00 3.16
263 264 4.946160 AGGGATTTGGTGGAATAGTTGA 57.054 40.909 0.00 0.00 0.00 3.18
264 265 5.472301 AGGGATTTGGTGGAATAGTTGAT 57.528 39.130 0.00 0.00 0.00 2.57
265 266 5.842339 AGGGATTTGGTGGAATAGTTGATT 58.158 37.500 0.00 0.00 0.00 2.57
266 267 6.263754 AGGGATTTGGTGGAATAGTTGATTT 58.736 36.000 0.00 0.00 0.00 2.17
267 268 7.418378 AGGGATTTGGTGGAATAGTTGATTTA 58.582 34.615 0.00 0.00 0.00 1.40
268 269 8.067488 AGGGATTTGGTGGAATAGTTGATTTAT 58.933 33.333 0.00 0.00 0.00 1.40
269 270 8.704668 GGGATTTGGTGGAATAGTTGATTTATT 58.295 33.333 0.00 0.00 0.00 1.40
270 271 9.533253 GGATTTGGTGGAATAGTTGATTTATTG 57.467 33.333 0.00 0.00 0.00 1.90
271 272 8.947055 ATTTGGTGGAATAGTTGATTTATTGC 57.053 30.769 0.00 0.00 31.75 3.56
272 273 7.716799 TTGGTGGAATAGTTGATTTATTGCT 57.283 32.000 0.00 0.00 32.19 3.91
273 274 7.716799 TGGTGGAATAGTTGATTTATTGCTT 57.283 32.000 0.00 0.00 32.19 3.91
274 275 8.815565 TGGTGGAATAGTTGATTTATTGCTTA 57.184 30.769 0.00 0.00 32.19 3.09
275 276 9.249053 TGGTGGAATAGTTGATTTATTGCTTAA 57.751 29.630 0.00 0.00 32.19 1.85
276 277 9.736023 GGTGGAATAGTTGATTTATTGCTTAAG 57.264 33.333 0.00 0.00 32.19 1.85
277 278 9.237846 GTGGAATAGTTGATTTATTGCTTAAGC 57.762 33.333 20.84 20.84 42.50 3.09
278 279 8.413229 TGGAATAGTTGATTTATTGCTTAAGCC 58.587 33.333 24.30 7.77 41.18 4.35
279 280 8.633561 GGAATAGTTGATTTATTGCTTAAGCCT 58.366 33.333 24.30 14.07 41.18 4.58
280 281 9.670719 GAATAGTTGATTTATTGCTTAAGCCTC 57.329 33.333 24.30 11.43 41.18 4.70
281 282 6.124088 AGTTGATTTATTGCTTAAGCCTCG 57.876 37.500 24.30 0.00 41.18 4.63
282 283 5.648092 AGTTGATTTATTGCTTAAGCCTCGT 59.352 36.000 24.30 10.09 41.18 4.18
283 284 5.484173 TGATTTATTGCTTAAGCCTCGTG 57.516 39.130 24.30 0.00 41.18 4.35
284 285 4.335315 TGATTTATTGCTTAAGCCTCGTGG 59.665 41.667 24.30 0.00 41.18 4.94
285 286 2.325583 TATTGCTTAAGCCTCGTGGG 57.674 50.000 24.30 0.00 41.18 4.61
299 300 5.713792 CCTCGTGGGCATATATATAGGAG 57.286 47.826 8.56 1.89 0.00 3.69
300 301 5.141182 CCTCGTGGGCATATATATAGGAGT 58.859 45.833 8.56 0.00 0.00 3.85
301 302 6.304624 CCTCGTGGGCATATATATAGGAGTA 58.695 44.000 8.56 0.00 0.00 2.59
302 303 6.207025 CCTCGTGGGCATATATATAGGAGTAC 59.793 46.154 8.56 2.84 0.00 2.73
303 304 6.665695 TCGTGGGCATATATATAGGAGTACA 58.334 40.000 8.56 0.00 0.00 2.90
304 305 7.120716 TCGTGGGCATATATATAGGAGTACAA 58.879 38.462 8.56 0.00 0.00 2.41
305 306 7.783119 TCGTGGGCATATATATAGGAGTACAAT 59.217 37.037 8.56 0.00 0.00 2.71
306 307 7.867909 CGTGGGCATATATATAGGAGTACAATG 59.132 40.741 8.56 0.00 0.00 2.82
307 308 8.924303 GTGGGCATATATATAGGAGTACAATGA 58.076 37.037 8.56 0.00 0.00 2.57
308 309 9.674705 TGGGCATATATATAGGAGTACAATGAT 57.325 33.333 8.56 0.00 0.00 2.45
318 319 6.723298 AGGAGTACAATGATCTACTTGGAG 57.277 41.667 0.00 0.00 0.00 3.86
319 320 6.198639 AGGAGTACAATGATCTACTTGGAGT 58.801 40.000 0.00 0.00 0.00 3.85
320 321 7.355101 AGGAGTACAATGATCTACTTGGAGTA 58.645 38.462 0.00 0.00 0.00 2.59
321 322 7.285858 AGGAGTACAATGATCTACTTGGAGTAC 59.714 40.741 0.00 0.00 0.00 2.73
322 323 7.068348 GGAGTACAATGATCTACTTGGAGTACA 59.932 40.741 0.00 0.00 33.62 2.90
323 324 8.362464 AGTACAATGATCTACTTGGAGTACAA 57.638 34.615 0.00 0.00 37.55 2.41
335 336 5.607939 TTGGAGTACAAGACAAGTCAGAA 57.392 39.130 2.72 0.00 33.18 3.02
336 337 4.945246 TGGAGTACAAGACAAGTCAGAAC 58.055 43.478 2.72 0.00 0.00 3.01
337 338 4.404394 TGGAGTACAAGACAAGTCAGAACA 59.596 41.667 2.72 0.00 0.00 3.18
338 339 5.105106 TGGAGTACAAGACAAGTCAGAACAA 60.105 40.000 2.72 0.00 0.00 2.83
339 340 5.815740 GGAGTACAAGACAAGTCAGAACAAA 59.184 40.000 2.72 0.00 0.00 2.83
340 341 6.483640 GGAGTACAAGACAAGTCAGAACAAAT 59.516 38.462 2.72 0.00 0.00 2.32
341 342 7.307455 GGAGTACAAGACAAGTCAGAACAAATC 60.307 40.741 2.72 0.00 0.00 2.17
342 343 5.757850 ACAAGACAAGTCAGAACAAATCC 57.242 39.130 2.72 0.00 0.00 3.01
343 344 5.440610 ACAAGACAAGTCAGAACAAATCCT 58.559 37.500 2.72 0.00 0.00 3.24
344 345 6.591935 ACAAGACAAGTCAGAACAAATCCTA 58.408 36.000 2.72 0.00 0.00 2.94
345 346 6.708054 ACAAGACAAGTCAGAACAAATCCTAG 59.292 38.462 2.72 0.00 0.00 3.02
346 347 6.426646 AGACAAGTCAGAACAAATCCTAGT 57.573 37.500 2.72 0.00 0.00 2.57
347 348 6.459923 AGACAAGTCAGAACAAATCCTAGTC 58.540 40.000 2.72 0.00 0.00 2.59
348 349 6.268847 AGACAAGTCAGAACAAATCCTAGTCT 59.731 38.462 2.72 0.00 0.00 3.24
349 350 7.451877 AGACAAGTCAGAACAAATCCTAGTCTA 59.548 37.037 2.72 0.00 0.00 2.59
350 351 8.140112 ACAAGTCAGAACAAATCCTAGTCTAT 57.860 34.615 0.00 0.00 0.00 1.98
351 352 8.254508 ACAAGTCAGAACAAATCCTAGTCTATC 58.745 37.037 0.00 0.00 0.00 2.08
352 353 8.474025 CAAGTCAGAACAAATCCTAGTCTATCT 58.526 37.037 0.00 0.00 0.00 1.98
353 354 8.232913 AGTCAGAACAAATCCTAGTCTATCTC 57.767 38.462 0.00 0.00 0.00 2.75
354 355 7.012894 AGTCAGAACAAATCCTAGTCTATCTCG 59.987 40.741 0.00 0.00 0.00 4.04
355 356 6.829298 TCAGAACAAATCCTAGTCTATCTCGT 59.171 38.462 0.00 0.00 0.00 4.18
356 357 7.339721 TCAGAACAAATCCTAGTCTATCTCGTT 59.660 37.037 0.00 0.00 0.00 3.85
357 358 7.976734 CAGAACAAATCCTAGTCTATCTCGTTT 59.023 37.037 0.00 0.00 0.00 3.60
358 359 8.532819 AGAACAAATCCTAGTCTATCTCGTTTT 58.467 33.333 0.00 0.00 0.00 2.43
359 360 9.152595 GAACAAATCCTAGTCTATCTCGTTTTT 57.847 33.333 0.00 0.00 0.00 1.94
360 361 8.705048 ACAAATCCTAGTCTATCTCGTTTTTC 57.295 34.615 0.00 0.00 0.00 2.29
361 362 7.764901 ACAAATCCTAGTCTATCTCGTTTTTCC 59.235 37.037 0.00 0.00 0.00 3.13
362 363 7.663043 AATCCTAGTCTATCTCGTTTTTCCT 57.337 36.000 0.00 0.00 0.00 3.36
363 364 8.763984 AATCCTAGTCTATCTCGTTTTTCCTA 57.236 34.615 0.00 0.00 0.00 2.94
364 365 8.763984 ATCCTAGTCTATCTCGTTTTTCCTAA 57.236 34.615 0.00 0.00 0.00 2.69
365 366 8.763984 TCCTAGTCTATCTCGTTTTTCCTAAT 57.236 34.615 0.00 0.00 0.00 1.73
366 367 9.857656 TCCTAGTCTATCTCGTTTTTCCTAATA 57.142 33.333 0.00 0.00 0.00 0.98
450 458 6.721704 TTCTGATCAGAGCTATAGCAAGAA 57.278 37.500 26.07 17.25 45.16 2.52
462 470 2.071778 AGCAAGAACCAAGAGCCAAA 57.928 45.000 0.00 0.00 0.00 3.28
488 497 2.034179 CAGGTCACCCGTTTTTCTTTCC 59.966 50.000 0.00 0.00 35.12 3.13
492 501 3.129813 GTCACCCGTTTTTCTTTCCAAGT 59.870 43.478 0.00 0.00 0.00 3.16
507 516 5.333566 TTCCAAGTTTTCCTAGGGTCATT 57.666 39.130 9.46 0.00 0.00 2.57
635 740 6.659242 ACCACGAGTTTCTTGGAAATAATCAT 59.341 34.615 8.40 0.00 37.96 2.45
727 2645 2.128128 GTTGACACGAAGCGCACG 60.128 61.111 21.44 21.44 0.00 5.34
745 2758 4.849310 CGGCCCGTGGTATGGTGG 62.849 72.222 0.00 0.00 0.00 4.61
746 2759 3.404438 GGCCCGTGGTATGGTGGA 61.404 66.667 0.00 0.00 0.00 4.02
747 2760 2.672295 GCCCGTGGTATGGTGGAA 59.328 61.111 0.00 0.00 0.00 3.53
748 2761 1.001887 GCCCGTGGTATGGTGGAAA 60.002 57.895 0.00 0.00 0.00 3.13
749 2762 1.310216 GCCCGTGGTATGGTGGAAAC 61.310 60.000 0.00 0.00 0.00 2.78
750 2763 0.678684 CCCGTGGTATGGTGGAAACC 60.679 60.000 0.00 0.00 0.00 3.27
751 2764 0.037017 CCGTGGTATGGTGGAAACCA 59.963 55.000 0.00 0.00 44.85 3.67
760 2773 3.304911 TGGTGGAAACCATGTCTTTCA 57.695 42.857 12.70 0.00 35.28 2.69
761 2774 3.221771 TGGTGGAAACCATGTCTTTCAG 58.778 45.455 12.70 0.00 35.28 3.02
762 2775 2.029918 GGTGGAAACCATGTCTTTCAGC 60.030 50.000 12.70 6.96 35.28 4.26
763 2776 1.879380 TGGAAACCATGTCTTTCAGCG 59.121 47.619 12.70 0.00 30.42 5.18
764 2777 1.880027 GGAAACCATGTCTTTCAGCGT 59.120 47.619 12.70 0.00 30.42 5.07
765 2778 2.350772 GGAAACCATGTCTTTCAGCGTG 60.351 50.000 12.70 0.00 30.42 5.34
766 2779 1.967319 AACCATGTCTTTCAGCGTGT 58.033 45.000 0.00 0.00 0.00 4.49
767 2780 1.229428 ACCATGTCTTTCAGCGTGTG 58.771 50.000 0.00 0.00 0.00 3.82
768 2781 0.110056 CCATGTCTTTCAGCGTGTGC 60.110 55.000 0.00 0.00 43.24 4.57
769 2782 0.587768 CATGTCTTTCAGCGTGTGCA 59.412 50.000 0.00 0.00 46.23 4.57
770 2783 1.198408 CATGTCTTTCAGCGTGTGCAT 59.802 47.619 0.00 0.00 46.23 3.96
771 2784 0.867746 TGTCTTTCAGCGTGTGCATC 59.132 50.000 0.00 0.00 46.23 3.91
772 2785 0.867746 GTCTTTCAGCGTGTGCATCA 59.132 50.000 0.00 0.00 46.23 3.07
773 2786 0.867746 TCTTTCAGCGTGTGCATCAC 59.132 50.000 8.75 8.75 46.23 3.06
774 2787 0.110056 CTTTCAGCGTGTGCATCACC 60.110 55.000 11.99 6.75 46.23 4.02
775 2788 1.514678 TTTCAGCGTGTGCATCACCC 61.515 55.000 11.99 5.30 46.23 4.61
776 2789 3.434319 CAGCGTGTGCATCACCCC 61.434 66.667 11.99 5.64 46.23 4.95
777 2790 4.722700 AGCGTGTGCATCACCCCC 62.723 66.667 11.99 3.78 46.23 5.40
779 2792 2.045045 CGTGTGCATCACCCCCAT 60.045 61.111 11.99 0.00 43.51 4.00
780 2793 2.114670 CGTGTGCATCACCCCCATC 61.115 63.158 11.99 0.00 43.51 3.51
781 2794 1.304282 GTGTGCATCACCCCCATCT 59.696 57.895 7.86 0.00 40.84 2.90
782 2795 0.546122 GTGTGCATCACCCCCATCTA 59.454 55.000 7.86 0.00 40.84 1.98
783 2796 1.064758 GTGTGCATCACCCCCATCTAA 60.065 52.381 7.86 0.00 40.84 2.10
784 2797 1.852309 TGTGCATCACCCCCATCTAAT 59.148 47.619 0.00 0.00 32.73 1.73
785 2798 2.158623 TGTGCATCACCCCCATCTAATC 60.159 50.000 0.00 0.00 32.73 1.75
786 2799 2.107204 GTGCATCACCCCCATCTAATCT 59.893 50.000 0.00 0.00 0.00 2.40
787 2800 2.785269 TGCATCACCCCCATCTAATCTT 59.215 45.455 0.00 0.00 0.00 2.40
788 2801 3.980022 TGCATCACCCCCATCTAATCTTA 59.020 43.478 0.00 0.00 0.00 2.10
789 2802 4.603171 TGCATCACCCCCATCTAATCTTAT 59.397 41.667 0.00 0.00 0.00 1.73
790 2803 5.189180 GCATCACCCCCATCTAATCTTATC 58.811 45.833 0.00 0.00 0.00 1.75
791 2804 5.045286 GCATCACCCCCATCTAATCTTATCT 60.045 44.000 0.00 0.00 0.00 1.98
792 2805 6.523150 GCATCACCCCCATCTAATCTTATCTT 60.523 42.308 0.00 0.00 0.00 2.40
793 2806 7.311297 GCATCACCCCCATCTAATCTTATCTTA 60.311 40.741 0.00 0.00 0.00 2.10
794 2807 8.776119 CATCACCCCCATCTAATCTTATCTTAT 58.224 37.037 0.00 0.00 0.00 1.73
795 2808 8.380742 TCACCCCCATCTAATCTTATCTTATC 57.619 38.462 0.00 0.00 0.00 1.75
796 2809 8.186985 TCACCCCCATCTAATCTTATCTTATCT 58.813 37.037 0.00 0.00 0.00 1.98
797 2810 8.482128 CACCCCCATCTAATCTTATCTTATCTC 58.518 40.741 0.00 0.00 0.00 2.75
798 2811 8.413821 ACCCCCATCTAATCTTATCTTATCTCT 58.586 37.037 0.00 0.00 0.00 3.10
799 2812 8.923270 CCCCCATCTAATCTTATCTTATCTCTC 58.077 40.741 0.00 0.00 0.00 3.20
800 2813 9.713684 CCCCATCTAATCTTATCTTATCTCTCT 57.286 37.037 0.00 0.00 0.00 3.10
818 2831 1.689813 TCTGCCTTGTCTGGTCGTAAA 59.310 47.619 0.00 0.00 0.00 2.01
864 2883 2.159819 GAACCAGAGCGAGAGGTGCA 62.160 60.000 0.00 0.00 45.11 4.57
894 2959 0.671781 GCAAAAGCGAGCTCTCCTGA 60.672 55.000 12.85 0.00 0.00 3.86
895 2960 1.800805 CAAAAGCGAGCTCTCCTGAA 58.199 50.000 12.85 0.00 0.00 3.02
897 2962 1.802069 AAAGCGAGCTCTCCTGAAAC 58.198 50.000 12.85 0.00 0.00 2.78
898 2963 0.972883 AAGCGAGCTCTCCTGAAACT 59.027 50.000 12.85 0.00 0.00 2.66
899 2964 0.246086 AGCGAGCTCTCCTGAAACTG 59.754 55.000 12.85 0.00 0.00 3.16
900 2965 0.244994 GCGAGCTCTCCTGAAACTGA 59.755 55.000 12.85 0.00 0.00 3.41
1003 3075 1.305381 ACTCCCACTCTTCCTCCCG 60.305 63.158 0.00 0.00 0.00 5.14
1076 3155 3.942748 TGTTCTTTCAGTACCGCAACTTT 59.057 39.130 0.00 0.00 0.00 2.66
1156 3238 1.627834 AGCAAGAACAAGGAGGAGGAG 59.372 52.381 0.00 0.00 0.00 3.69
1157 3239 1.339535 GCAAGAACAAGGAGGAGGAGG 60.340 57.143 0.00 0.00 0.00 4.30
1158 3240 2.260822 CAAGAACAAGGAGGAGGAGGA 58.739 52.381 0.00 0.00 0.00 3.71
1245 3327 1.920325 CCTCAAGGACCAGGCTGGA 60.920 63.158 38.99 15.31 41.78 3.86
1276 3358 0.456312 GAACTACGCACTCAGGTCCG 60.456 60.000 0.00 0.00 32.17 4.79
1302 3390 2.123897 ACAGCCAAGGCCAACGTT 60.124 55.556 5.01 0.00 43.17 3.99
1305 3393 2.975799 GCCAAGGCCAACGTTCGA 60.976 61.111 5.01 0.00 34.56 3.71
1453 3541 3.793819 AGGAGTACTAGTAGCTAGGGC 57.206 52.381 1.87 0.00 38.30 5.19
1454 3542 3.054576 AGGAGTACTAGTAGCTAGGGCA 58.945 50.000 1.87 0.00 38.30 5.36
1456 3544 4.850963 AGGAGTACTAGTAGCTAGGGCATA 59.149 45.833 1.87 0.00 38.30 3.14
1457 3545 5.045432 AGGAGTACTAGTAGCTAGGGCATAG 60.045 48.000 1.87 0.96 38.30 2.23
1458 3546 5.182169 AGTACTAGTAGCTAGGGCATAGG 57.818 47.826 8.42 0.00 38.30 2.57
1459 3547 3.459710 ACTAGTAGCTAGGGCATAGGG 57.540 52.381 8.42 0.00 38.30 3.53
1460 3548 2.043252 ACTAGTAGCTAGGGCATAGGGG 59.957 54.545 8.42 0.00 38.30 4.79
1461 3549 0.545548 AGTAGCTAGGGCATAGGGGC 60.546 60.000 8.42 0.00 41.70 5.80
1491 3583 1.873591 CGTTGCAGCAAGAGTAACCTT 59.126 47.619 8.49 0.00 0.00 3.50
1493 3585 2.618709 GTTGCAGCAAGAGTAACCTTGT 59.381 45.455 8.49 0.00 43.96 3.16
1495 3587 3.399330 TGCAGCAAGAGTAACCTTGTAC 58.601 45.455 0.00 0.00 43.96 2.90
1497 3589 3.859627 GCAGCAAGAGTAACCTTGTACGA 60.860 47.826 0.00 0.00 43.96 3.43
1512 3604 1.476891 GTACGAAGACATGGCCTGAGA 59.523 52.381 3.32 0.00 0.00 3.27
1514 3606 0.820226 CGAAGACATGGCCTGAGAGA 59.180 55.000 3.32 0.00 0.00 3.10
1515 3607 1.470632 CGAAGACATGGCCTGAGAGAC 60.471 57.143 3.32 0.00 0.00 3.36
1517 3609 1.949799 AGACATGGCCTGAGAGACTT 58.050 50.000 3.32 0.00 0.00 3.01
1518 3610 1.830477 AGACATGGCCTGAGAGACTTC 59.170 52.381 3.32 0.00 0.00 3.01
1520 3612 1.202330 CATGGCCTGAGAGACTTCCT 58.798 55.000 3.32 0.00 0.00 3.36
1521 3613 1.134461 CATGGCCTGAGAGACTTCCTG 60.134 57.143 3.32 0.00 0.00 3.86
1523 3615 0.907230 GGCCTGAGAGACTTCCTGGT 60.907 60.000 0.00 0.00 0.00 4.00
1524 3616 0.980423 GCCTGAGAGACTTCCTGGTT 59.020 55.000 0.00 0.00 0.00 3.67
1525 3617 1.338579 GCCTGAGAGACTTCCTGGTTG 60.339 57.143 0.00 0.00 0.00 3.77
1526 3618 1.974236 CCTGAGAGACTTCCTGGTTGT 59.026 52.381 0.00 0.00 0.00 3.32
1527 3619 2.028567 CCTGAGAGACTTCCTGGTTGTC 60.029 54.545 11.73 11.73 0.00 3.18
1531 5988 0.401395 AGACTTCCTGGTTGTCCCCA 60.401 55.000 14.60 0.00 0.00 4.96
1534 5991 0.698238 CTTCCTGGTTGTCCCCATGA 59.302 55.000 0.00 0.00 33.00 3.07
1537 5994 0.464373 CCTGGTTGTCCCCATGATCG 60.464 60.000 0.00 0.00 33.00 3.69
1538 5995 0.464373 CTGGTTGTCCCCATGATCGG 60.464 60.000 0.00 0.00 33.00 4.18
1553 6010 5.997746 CCATGATCGGTTGTAAAGATACCAT 59.002 40.000 0.00 0.00 32.12 3.55
1599 6062 5.661458 ACGAGTTTATATCACTGTCCTTGG 58.339 41.667 0.00 0.00 0.00 3.61
1638 6101 7.735917 TGACTATTTGTCTTGAGAGGAAGAAA 58.264 34.615 0.17 0.00 45.54 2.52
1642 6105 6.683974 TTTGTCTTGAGAGGAAGAAAGTTG 57.316 37.500 0.00 0.00 33.73 3.16
1653 6116 6.014925 AGAGGAAGAAAGTTGAGAGTTACTCC 60.015 42.308 8.96 1.53 44.34 3.85
1671 6134 1.984570 CGGGAGAGCAACTCAGGGA 60.985 63.158 11.83 0.00 46.54 4.20
1672 6135 1.904032 GGGAGAGCAACTCAGGGAG 59.096 63.158 11.83 0.00 46.54 4.30
1675 6138 2.125350 GAGCAACTCAGGGAGGCG 60.125 66.667 0.00 0.00 33.35 5.52
1698 6161 4.973168 AGGTGAGAAGCATACAGAAAACA 58.027 39.130 0.00 0.00 0.00 2.83
1703 6166 4.645535 AGAAGCATACAGAAAACAGAGCA 58.354 39.130 0.00 0.00 0.00 4.26
1705 6168 5.180868 AGAAGCATACAGAAAACAGAGCAAG 59.819 40.000 0.00 0.00 0.00 4.01
1714 6177 1.510480 AACAGAGCAAGTTCAGCCGC 61.510 55.000 0.00 0.00 0.00 6.53
1722 6185 0.107831 AAGTTCAGCCGCCTGTACAA 59.892 50.000 5.96 0.00 40.58 2.41
1723 6186 0.324943 AGTTCAGCCGCCTGTACAAT 59.675 50.000 5.96 0.00 40.58 2.71
1724 6187 1.553248 AGTTCAGCCGCCTGTACAATA 59.447 47.619 5.96 0.00 40.58 1.90
1725 6188 1.664151 GTTCAGCCGCCTGTACAATAC 59.336 52.381 0.00 0.00 38.70 1.89
1726 6189 0.899019 TCAGCCGCCTGTACAATACA 59.101 50.000 0.00 0.00 40.09 2.29
1727 6190 1.276705 TCAGCCGCCTGTACAATACAA 59.723 47.619 0.00 0.00 40.09 2.41
1728 6191 1.396996 CAGCCGCCTGTACAATACAAC 59.603 52.381 0.00 0.00 38.38 3.32
1729 6192 0.730840 GCCGCCTGTACAATACAACC 59.269 55.000 0.00 0.00 38.38 3.77
1730 6193 1.375551 CCGCCTGTACAATACAACCC 58.624 55.000 0.00 0.00 38.38 4.11
1731 6194 1.339247 CCGCCTGTACAATACAACCCA 60.339 52.381 0.00 0.00 38.38 4.51
1732 6195 2.428491 CGCCTGTACAATACAACCCAA 58.572 47.619 0.00 0.00 38.38 4.12
1733 6196 2.814919 CGCCTGTACAATACAACCCAAA 59.185 45.455 0.00 0.00 38.38 3.28
1734 6197 3.253677 CGCCTGTACAATACAACCCAAAA 59.746 43.478 0.00 0.00 38.38 2.44
1735 6198 4.552355 GCCTGTACAATACAACCCAAAAC 58.448 43.478 0.00 0.00 38.38 2.43
1736 6199 4.279922 GCCTGTACAATACAACCCAAAACT 59.720 41.667 0.00 0.00 38.38 2.66
1737 6200 5.564063 GCCTGTACAATACAACCCAAAACTC 60.564 44.000 0.00 0.00 38.38 3.01
1738 6201 5.768164 CCTGTACAATACAACCCAAAACTCT 59.232 40.000 0.00 0.00 38.38 3.24
1739 6202 6.293955 CCTGTACAATACAACCCAAAACTCTG 60.294 42.308 0.00 0.00 38.38 3.35
1740 6203 4.584327 ACAATACAACCCAAAACTCTGC 57.416 40.909 0.00 0.00 0.00 4.26
1741 6204 3.957497 ACAATACAACCCAAAACTCTGCA 59.043 39.130 0.00 0.00 0.00 4.41
1742 6205 4.202111 ACAATACAACCCAAAACTCTGCAC 60.202 41.667 0.00 0.00 0.00 4.57
1743 6206 1.846007 ACAACCCAAAACTCTGCACA 58.154 45.000 0.00 0.00 0.00 4.57
1744 6207 2.175202 ACAACCCAAAACTCTGCACAA 58.825 42.857 0.00 0.00 0.00 3.33
1745 6208 2.564947 ACAACCCAAAACTCTGCACAAA 59.435 40.909 0.00 0.00 0.00 2.83
1746 6209 3.189285 CAACCCAAAACTCTGCACAAAG 58.811 45.455 0.00 0.00 0.00 2.77
1747 6210 1.756538 ACCCAAAACTCTGCACAAAGG 59.243 47.619 0.00 0.00 0.00 3.11
1748 6211 2.031120 CCCAAAACTCTGCACAAAGGA 58.969 47.619 0.00 0.00 0.00 3.36
1749 6212 2.430332 CCCAAAACTCTGCACAAAGGAA 59.570 45.455 0.00 0.00 0.00 3.36
1750 6213 3.070015 CCCAAAACTCTGCACAAAGGAAT 59.930 43.478 0.00 0.00 0.00 3.01
1751 6214 4.280677 CCCAAAACTCTGCACAAAGGAATA 59.719 41.667 0.00 0.00 0.00 1.75
1752 6215 5.221422 CCCAAAACTCTGCACAAAGGAATAA 60.221 40.000 0.00 0.00 0.00 1.40
1753 6216 6.279882 CCAAAACTCTGCACAAAGGAATAAA 58.720 36.000 0.00 0.00 0.00 1.40
1754 6217 6.421801 CCAAAACTCTGCACAAAGGAATAAAG 59.578 38.462 0.00 0.00 0.00 1.85
1755 6218 5.712152 AACTCTGCACAAAGGAATAAAGG 57.288 39.130 0.00 0.00 0.00 3.11
1756 6219 4.985538 ACTCTGCACAAAGGAATAAAGGA 58.014 39.130 0.00 0.00 0.00 3.36
1757 6220 5.574188 ACTCTGCACAAAGGAATAAAGGAT 58.426 37.500 0.00 0.00 0.00 3.24
1758 6221 6.721318 ACTCTGCACAAAGGAATAAAGGATA 58.279 36.000 0.00 0.00 0.00 2.59
1759 6222 6.825721 ACTCTGCACAAAGGAATAAAGGATAG 59.174 38.462 0.00 0.00 0.00 2.08
1760 6223 6.957631 TCTGCACAAAGGAATAAAGGATAGA 58.042 36.000 0.00 0.00 0.00 1.98
1761 6224 7.402054 TCTGCACAAAGGAATAAAGGATAGAA 58.598 34.615 0.00 0.00 0.00 2.10
1762 6225 7.336931 TCTGCACAAAGGAATAAAGGATAGAAC 59.663 37.037 0.00 0.00 0.00 3.01
1763 6226 6.093495 TGCACAAAGGAATAAAGGATAGAACG 59.907 38.462 0.00 0.00 0.00 3.95
1764 6227 6.458342 GCACAAAGGAATAAAGGATAGAACGG 60.458 42.308 0.00 0.00 0.00 4.44
1765 6228 6.821665 CACAAAGGAATAAAGGATAGAACGGA 59.178 38.462 0.00 0.00 0.00 4.69
1766 6229 7.499232 CACAAAGGAATAAAGGATAGAACGGAT 59.501 37.037 0.00 0.00 0.00 4.18
1767 6230 7.715686 ACAAAGGAATAAAGGATAGAACGGATC 59.284 37.037 0.00 0.00 0.00 3.36
1768 6231 7.619512 AAGGAATAAAGGATAGAACGGATCT 57.380 36.000 0.00 0.00 42.48 2.75
1769 6232 7.619512 AGGAATAAAGGATAGAACGGATCTT 57.380 36.000 0.00 0.00 39.71 2.40
1770 6233 7.445945 AGGAATAAAGGATAGAACGGATCTTG 58.554 38.462 0.00 0.00 39.71 3.02
1771 6234 6.651225 GGAATAAAGGATAGAACGGATCTTGG 59.349 42.308 0.00 0.00 39.71 3.61
1772 6235 3.477210 AAGGATAGAACGGATCTTGGC 57.523 47.619 0.00 0.00 39.71 4.52
1773 6236 1.341531 AGGATAGAACGGATCTTGGCG 59.658 52.381 0.00 0.00 39.71 5.69
1803 6266 0.539051 CTGCCCTCCAAGATCTTCGT 59.461 55.000 4.57 0.00 0.00 3.85
1853 6316 1.205179 TCGCTGAAACGGTGGCTATTA 59.795 47.619 0.00 0.00 0.00 0.98
1888 6351 2.032030 CGCGTTCTGTCCAACAAATTCT 60.032 45.455 0.00 0.00 0.00 2.40
1893 6356 5.560953 CGTTCTGTCCAACAAATTCTTCTCC 60.561 44.000 0.00 0.00 0.00 3.71
1895 6358 5.065914 TCTGTCCAACAAATTCTTCTCCAG 58.934 41.667 0.00 0.00 0.00 3.86
1931 6394 5.649557 GGAACAACATGTATATGCTTTGCA 58.350 37.500 0.00 0.00 44.86 4.08
1955 6418 3.181491 TGGTTGCAAGTACTTTCTGTTGC 60.181 43.478 5.07 6.71 44.53 4.17
2005 6468 1.202940 GGGTTCAAGGGATAGGGATGC 60.203 57.143 0.00 0.00 0.00 3.91
2012 6475 1.140312 GGGATAGGGATGCCACTGAA 58.860 55.000 5.86 0.00 43.03 3.02
2055 6519 7.436673 GCAGAGTCGTCATTCTCTAAATATGTT 59.563 37.037 0.00 0.00 38.74 2.71
2079 6543 3.894351 TTTTATTAGAACGAGCGCGAC 57.106 42.857 19.05 10.21 41.64 5.19
2081 6545 0.316442 TATTAGAACGAGCGCGACGG 60.316 55.000 26.78 10.86 41.64 4.79
2098 6562 1.499056 GGCACAGTGAAGCACATCG 59.501 57.895 4.15 0.00 36.74 3.84
2102 6566 1.198408 CACAGTGAAGCACATCGCAAT 59.802 47.619 0.00 0.00 46.13 3.56
2128 6593 2.159156 CGGTGGAAACGACATCTATGGA 60.159 50.000 0.00 0.00 0.00 3.41
2211 6679 6.128138 AGTTAGCACAAGGAGATTTTACCT 57.872 37.500 0.00 0.00 38.23 3.08
2255 6724 5.452356 GCGTAATACCCTAGTCCTGCTTTAA 60.452 44.000 0.00 0.00 0.00 1.52
2308 6777 4.588854 TACGGTGCGTGCGTGGTT 62.589 61.111 0.00 0.00 41.39 3.67
2379 6848 0.032615 AAAAGGGGTTGCCACAGTGA 60.033 50.000 0.62 0.00 0.00 3.41
2480 6951 6.620877 TTTAGGTCTCCTCTTGCTTTATCA 57.379 37.500 0.00 0.00 34.61 2.15
2483 6954 3.452627 GGTCTCCTCTTGCTTTATCAGGA 59.547 47.826 0.00 0.00 0.00 3.86
2492 6963 4.274602 TGCTTTATCAGGAACGGTAACA 57.725 40.909 0.00 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.589223 TTGATCGCGCGGTTTCTTTT 59.411 45.000 31.69 4.56 0.00 2.27
1 2 0.165944 CTTGATCGCGCGGTTTCTTT 59.834 50.000 31.69 6.07 0.00 2.52
2 3 0.669318 TCTTGATCGCGCGGTTTCTT 60.669 50.000 31.69 7.98 0.00 2.52
3 4 0.460284 ATCTTGATCGCGCGGTTTCT 60.460 50.000 31.69 9.74 0.00 2.52
4 5 0.315382 CATCTTGATCGCGCGGTTTC 60.315 55.000 31.69 23.21 0.00 2.78
5 6 0.739462 TCATCTTGATCGCGCGGTTT 60.739 50.000 31.69 15.51 0.00 3.27
6 7 1.153647 TCATCTTGATCGCGCGGTT 60.154 52.632 31.69 18.38 0.00 4.44
7 8 1.878522 GTCATCTTGATCGCGCGGT 60.879 57.895 31.69 26.40 0.00 5.68
8 9 2.589492 GGTCATCTTGATCGCGCGG 61.589 63.158 31.69 13.80 0.00 6.46
9 10 2.920964 CGGTCATCTTGATCGCGCG 61.921 63.158 26.76 26.76 44.44 6.86
10 11 2.923854 CGGTCATCTTGATCGCGC 59.076 61.111 0.00 0.00 44.44 6.86
14 15 1.595382 CCCGCCGGTCATCTTGATC 60.595 63.158 1.90 0.00 0.00 2.92
15 16 2.032860 CTCCCGCCGGTCATCTTGAT 62.033 60.000 1.90 0.00 0.00 2.57
16 17 2.682136 TCCCGCCGGTCATCTTGA 60.682 61.111 1.90 0.00 0.00 3.02
17 18 2.202932 CTCCCGCCGGTCATCTTG 60.203 66.667 1.90 0.00 0.00 3.02
18 19 2.363795 TCTCCCGCCGGTCATCTT 60.364 61.111 1.90 0.00 0.00 2.40
19 20 2.835431 CTCTCCCGCCGGTCATCT 60.835 66.667 1.90 0.00 0.00 2.90
20 21 2.833582 TCTCTCCCGCCGGTCATC 60.834 66.667 1.90 0.00 0.00 2.92
21 22 2.835431 CTCTCTCCCGCCGGTCAT 60.835 66.667 1.90 0.00 0.00 3.06
22 23 3.578968 TTCTCTCTCCCGCCGGTCA 62.579 63.158 1.90 0.00 0.00 4.02
23 24 1.885163 TTTTCTCTCTCCCGCCGGTC 61.885 60.000 1.90 0.00 0.00 4.79
24 25 1.911766 TTTTCTCTCTCCCGCCGGT 60.912 57.895 1.90 0.00 0.00 5.28
25 26 1.448013 GTTTTCTCTCTCCCGCCGG 60.448 63.158 0.00 0.00 0.00 6.13
26 27 1.448013 GGTTTTCTCTCTCCCGCCG 60.448 63.158 0.00 0.00 0.00 6.46
27 28 0.108089 GAGGTTTTCTCTCTCCCGCC 60.108 60.000 0.00 0.00 39.38 6.13
28 29 0.458716 CGAGGTTTTCTCTCTCCCGC 60.459 60.000 0.00 0.00 40.30 6.13
29 30 0.173708 CCGAGGTTTTCTCTCTCCCG 59.826 60.000 0.00 0.00 40.30 5.14
30 31 1.478916 CTCCGAGGTTTTCTCTCTCCC 59.521 57.143 0.00 0.00 40.30 4.30
31 32 1.134936 GCTCCGAGGTTTTCTCTCTCC 60.135 57.143 0.00 0.00 40.30 3.71
32 33 1.546476 TGCTCCGAGGTTTTCTCTCTC 59.454 52.381 0.00 0.00 40.30 3.20
33 34 1.633774 TGCTCCGAGGTTTTCTCTCT 58.366 50.000 0.00 0.00 40.30 3.10
34 35 2.028930 TCTTGCTCCGAGGTTTTCTCTC 60.029 50.000 0.00 0.00 40.30 3.20
35 36 1.971357 TCTTGCTCCGAGGTTTTCTCT 59.029 47.619 0.00 0.00 40.30 3.10
36 37 2.070028 GTCTTGCTCCGAGGTTTTCTC 58.930 52.381 0.00 0.00 39.10 2.87
37 38 1.694696 AGTCTTGCTCCGAGGTTTTCT 59.305 47.619 0.00 0.00 0.00 2.52
38 39 2.070028 GAGTCTTGCTCCGAGGTTTTC 58.930 52.381 0.00 0.00 38.27 2.29
39 40 1.605712 CGAGTCTTGCTCCGAGGTTTT 60.606 52.381 0.00 0.00 41.10 2.43
40 41 0.038159 CGAGTCTTGCTCCGAGGTTT 60.038 55.000 0.00 0.00 41.10 3.27
41 42 1.587054 CGAGTCTTGCTCCGAGGTT 59.413 57.895 0.00 0.00 41.10 3.50
42 43 2.344203 CCGAGTCTTGCTCCGAGGT 61.344 63.158 0.00 0.00 41.10 3.85
43 44 2.492090 CCGAGTCTTGCTCCGAGG 59.508 66.667 0.00 0.00 41.10 4.63
44 45 2.492090 CCCGAGTCTTGCTCCGAG 59.508 66.667 0.00 0.00 41.10 4.63
45 46 3.068691 CCCCGAGTCTTGCTCCGA 61.069 66.667 0.00 0.00 41.10 4.55
46 47 2.167398 TTTCCCCGAGTCTTGCTCCG 62.167 60.000 0.00 0.00 41.10 4.63
47 48 0.036306 TTTTCCCCGAGTCTTGCTCC 59.964 55.000 0.00 0.00 41.10 4.70
48 49 1.002087 TCTTTTCCCCGAGTCTTGCTC 59.998 52.381 0.00 0.00 40.77 4.26
49 50 1.056660 TCTTTTCCCCGAGTCTTGCT 58.943 50.000 0.00 0.00 0.00 3.91
50 51 1.157585 GTCTTTTCCCCGAGTCTTGC 58.842 55.000 0.00 0.00 0.00 4.01
51 52 2.300437 AGAGTCTTTTCCCCGAGTCTTG 59.700 50.000 0.00 0.00 36.75 3.02
52 53 2.563620 GAGAGTCTTTTCCCCGAGTCTT 59.436 50.000 0.00 0.00 39.40 3.01
53 54 2.172679 GAGAGTCTTTTCCCCGAGTCT 58.827 52.381 0.00 0.00 41.37 3.24
54 55 2.172679 AGAGAGTCTTTTCCCCGAGTC 58.827 52.381 0.00 0.00 0.00 3.36
55 56 2.312424 AGAGAGTCTTTTCCCCGAGT 57.688 50.000 0.00 0.00 0.00 4.18
56 57 3.131400 CCTTAGAGAGTCTTTTCCCCGAG 59.869 52.174 0.00 0.00 0.00 4.63
57 58 3.097614 CCTTAGAGAGTCTTTTCCCCGA 58.902 50.000 0.00 0.00 0.00 5.14
58 59 2.418884 GCCTTAGAGAGTCTTTTCCCCG 60.419 54.545 0.00 0.00 0.00 5.73
59 60 2.572104 TGCCTTAGAGAGTCTTTTCCCC 59.428 50.000 0.00 0.00 0.00 4.81
60 61 3.867857 CTGCCTTAGAGAGTCTTTTCCC 58.132 50.000 0.00 0.00 0.00 3.97
61 62 3.266636 GCTGCCTTAGAGAGTCTTTTCC 58.733 50.000 0.00 0.00 0.00 3.13
62 63 3.266636 GGCTGCCTTAGAGAGTCTTTTC 58.733 50.000 12.43 0.00 0.00 2.29
63 64 2.639839 TGGCTGCCTTAGAGAGTCTTTT 59.360 45.455 21.03 0.00 0.00 2.27
64 65 2.235898 CTGGCTGCCTTAGAGAGTCTTT 59.764 50.000 21.03 0.00 0.00 2.52
65 66 1.830477 CTGGCTGCCTTAGAGAGTCTT 59.170 52.381 21.03 0.00 0.00 3.01
66 67 1.272985 ACTGGCTGCCTTAGAGAGTCT 60.273 52.381 21.03 0.00 0.00 3.24
67 68 1.136110 GACTGGCTGCCTTAGAGAGTC 59.864 57.143 21.03 18.04 32.44 3.36
68 69 1.190643 GACTGGCTGCCTTAGAGAGT 58.809 55.000 21.03 13.44 0.00 3.24
69 70 1.189752 TGACTGGCTGCCTTAGAGAG 58.810 55.000 21.03 10.04 0.00 3.20
70 71 1.276421 GTTGACTGGCTGCCTTAGAGA 59.724 52.381 21.03 0.00 0.00 3.10
71 72 1.002430 TGTTGACTGGCTGCCTTAGAG 59.998 52.381 21.03 11.20 0.00 2.43
72 73 1.055849 TGTTGACTGGCTGCCTTAGA 58.944 50.000 21.03 0.00 0.00 2.10
73 74 1.160137 GTGTTGACTGGCTGCCTTAG 58.840 55.000 21.03 12.36 0.00 2.18
74 75 0.602638 CGTGTTGACTGGCTGCCTTA 60.603 55.000 21.03 0.00 0.00 2.69
75 76 1.893808 CGTGTTGACTGGCTGCCTT 60.894 57.895 21.03 6.66 0.00 4.35
76 77 2.281070 CGTGTTGACTGGCTGCCT 60.281 61.111 21.03 0.00 0.00 4.75
77 78 2.280797 TCGTGTTGACTGGCTGCC 60.281 61.111 12.87 12.87 0.00 4.85
78 79 2.939022 GTCGTGTTGACTGGCTGC 59.061 61.111 0.00 0.00 44.58 5.25
86 87 4.651008 GTCCGCCGGTCGTGTTGA 62.651 66.667 15.38 4.68 36.19 3.18
93 94 2.862347 CTAGTGTTCGTCCGCCGGTC 62.862 65.000 1.63 0.00 37.11 4.79
94 95 2.985282 TAGTGTTCGTCCGCCGGT 60.985 61.111 1.63 0.00 37.11 5.28
95 96 2.202570 CTAGTGTTCGTCCGCCGG 60.203 66.667 0.00 0.00 37.11 6.13
96 97 1.647545 TACCTAGTGTTCGTCCGCCG 61.648 60.000 0.00 0.00 38.13 6.46
97 98 0.179153 GTACCTAGTGTTCGTCCGCC 60.179 60.000 0.00 0.00 0.00 6.13
98 99 0.522076 CGTACCTAGTGTTCGTCCGC 60.522 60.000 0.00 0.00 33.60 5.54
99 100 0.097674 CCGTACCTAGTGTTCGTCCG 59.902 60.000 8.66 0.00 36.16 4.79
100 101 0.453390 CCCGTACCTAGTGTTCGTCC 59.547 60.000 8.66 0.00 36.16 4.79
101 102 0.179153 GCCCGTACCTAGTGTTCGTC 60.179 60.000 8.66 0.16 36.16 4.20
102 103 1.885871 GCCCGTACCTAGTGTTCGT 59.114 57.895 8.66 0.00 36.16 3.85
103 104 1.226491 CGCCCGTACCTAGTGTTCG 60.226 63.158 4.26 4.26 37.48 3.95
104 105 0.179153 GTCGCCCGTACCTAGTGTTC 60.179 60.000 0.00 0.00 0.00 3.18
105 106 1.885871 GTCGCCCGTACCTAGTGTT 59.114 57.895 0.00 0.00 0.00 3.32
106 107 2.401766 CGTCGCCCGTACCTAGTGT 61.402 63.158 0.00 0.00 0.00 3.55
107 108 2.406401 CGTCGCCCGTACCTAGTG 59.594 66.667 0.00 0.00 0.00 2.74
108 109 3.512516 GCGTCGCCCGTACCTAGT 61.513 66.667 5.75 0.00 39.32 2.57
109 110 4.602696 CGCGTCGCCCGTACCTAG 62.603 72.222 12.44 0.00 39.32 3.02
137 138 4.241555 ATCGGCCTCCATGACCGC 62.242 66.667 0.00 1.38 46.49 5.68
139 140 2.029666 CGATCGGCCTCCATGACC 59.970 66.667 7.38 0.00 0.00 4.02
140 141 2.663188 GCGATCGGCCTCCATGAC 60.663 66.667 18.30 0.00 34.80 3.06
167 168 4.988598 CTTCCACACCCGTGCGCT 62.989 66.667 9.73 0.00 42.17 5.92
186 187 4.165486 TAAACCCTAGCCGCCGCC 62.165 66.667 0.00 0.00 34.57 6.13
187 188 2.588034 CTAAACCCTAGCCGCCGC 60.588 66.667 0.00 0.00 0.00 6.53
188 189 1.755393 ATCCTAAACCCTAGCCGCCG 61.755 60.000 0.00 0.00 0.00 6.46
189 190 0.035036 GATCCTAAACCCTAGCCGCC 59.965 60.000 0.00 0.00 0.00 6.13
190 191 0.756903 TGATCCTAAACCCTAGCCGC 59.243 55.000 0.00 0.00 0.00 6.53
191 192 2.434702 AGTTGATCCTAAACCCTAGCCG 59.565 50.000 0.00 0.00 0.00 5.52
192 193 4.200092 CAAGTTGATCCTAAACCCTAGCC 58.800 47.826 0.00 0.00 0.00 3.93
193 194 3.628032 GCAAGTTGATCCTAAACCCTAGC 59.372 47.826 7.16 0.00 0.00 3.42
194 195 3.871594 CGCAAGTTGATCCTAAACCCTAG 59.128 47.826 7.16 0.00 0.00 3.02
195 196 3.516300 TCGCAAGTTGATCCTAAACCCTA 59.484 43.478 7.16 0.00 39.48 3.53
196 197 2.304761 TCGCAAGTTGATCCTAAACCCT 59.695 45.455 7.16 0.00 39.48 4.34
197 198 2.706890 TCGCAAGTTGATCCTAAACCC 58.293 47.619 7.16 0.00 39.48 4.11
198 199 5.357257 TCTATCGCAAGTTGATCCTAAACC 58.643 41.667 7.16 0.00 39.48 3.27
199 200 8.764524 ATATCTATCGCAAGTTGATCCTAAAC 57.235 34.615 7.16 0.00 39.48 2.01
200 201 8.585018 TGATATCTATCGCAAGTTGATCCTAAA 58.415 33.333 7.16 0.00 35.48 1.85
201 202 8.122472 TGATATCTATCGCAAGTTGATCCTAA 57.878 34.615 7.16 0.00 35.48 2.69
202 203 7.703058 TGATATCTATCGCAAGTTGATCCTA 57.297 36.000 7.16 0.00 35.48 2.94
203 204 6.596309 TGATATCTATCGCAAGTTGATCCT 57.404 37.500 7.16 0.00 35.48 3.24
204 205 6.815641 ACATGATATCTATCGCAAGTTGATCC 59.184 38.462 7.16 0.00 35.48 3.36
205 206 7.824704 ACATGATATCTATCGCAAGTTGATC 57.175 36.000 7.16 0.00 35.48 2.92
206 207 9.363763 CTAACATGATATCTATCGCAAGTTGAT 57.636 33.333 7.16 0.00 35.48 2.57
207 208 8.576442 TCTAACATGATATCTATCGCAAGTTGA 58.424 33.333 7.16 0.00 35.48 3.18
208 209 8.748380 TCTAACATGATATCTATCGCAAGTTG 57.252 34.615 0.00 0.00 35.48 3.16
209 210 9.416794 CTTCTAACATGATATCTATCGCAAGTT 57.583 33.333 0.00 0.00 35.48 2.66
210 211 8.031864 CCTTCTAACATGATATCTATCGCAAGT 58.968 37.037 0.00 0.00 35.48 3.16
211 212 7.490725 CCCTTCTAACATGATATCTATCGCAAG 59.509 40.741 0.00 0.00 35.48 4.01
212 213 7.178451 TCCCTTCTAACATGATATCTATCGCAA 59.822 37.037 0.00 0.00 35.48 4.85
213 214 6.663523 TCCCTTCTAACATGATATCTATCGCA 59.336 38.462 0.00 0.00 35.48 5.10
214 215 7.067615 TCTCCCTTCTAACATGATATCTATCGC 59.932 40.741 0.00 0.00 35.48 4.58
215 216 8.512966 TCTCCCTTCTAACATGATATCTATCG 57.487 38.462 0.00 0.00 35.48 2.92
218 219 9.094578 CCTTTCTCCCTTCTAACATGATATCTA 57.905 37.037 0.00 0.00 0.00 1.98
219 220 7.017056 CCCTTTCTCCCTTCTAACATGATATCT 59.983 40.741 0.00 0.00 0.00 1.98
220 221 7.016661 TCCCTTTCTCCCTTCTAACATGATATC 59.983 40.741 0.00 0.00 0.00 1.63
221 222 6.851836 TCCCTTTCTCCCTTCTAACATGATAT 59.148 38.462 0.00 0.00 0.00 1.63
222 223 6.209774 TCCCTTTCTCCCTTCTAACATGATA 58.790 40.000 0.00 0.00 0.00 2.15
223 224 5.039645 TCCCTTTCTCCCTTCTAACATGAT 58.960 41.667 0.00 0.00 0.00 2.45
224 225 4.435137 TCCCTTTCTCCCTTCTAACATGA 58.565 43.478 0.00 0.00 0.00 3.07
225 226 4.844349 TCCCTTTCTCCCTTCTAACATG 57.156 45.455 0.00 0.00 0.00 3.21
226 227 6.190587 CAAATCCCTTTCTCCCTTCTAACAT 58.809 40.000 0.00 0.00 0.00 2.71
227 228 5.516591 CCAAATCCCTTTCTCCCTTCTAACA 60.517 44.000 0.00 0.00 0.00 2.41
228 229 4.950475 CCAAATCCCTTTCTCCCTTCTAAC 59.050 45.833 0.00 0.00 0.00 2.34
229 230 4.606255 ACCAAATCCCTTTCTCCCTTCTAA 59.394 41.667 0.00 0.00 0.00 2.10
230 231 4.018415 CACCAAATCCCTTTCTCCCTTCTA 60.018 45.833 0.00 0.00 0.00 2.10
231 232 2.996742 ACCAAATCCCTTTCTCCCTTCT 59.003 45.455 0.00 0.00 0.00 2.85
232 233 3.092301 CACCAAATCCCTTTCTCCCTTC 58.908 50.000 0.00 0.00 0.00 3.46
233 234 2.225369 CCACCAAATCCCTTTCTCCCTT 60.225 50.000 0.00 0.00 0.00 3.95
234 235 1.359130 CCACCAAATCCCTTTCTCCCT 59.641 52.381 0.00 0.00 0.00 4.20
235 236 1.357761 TCCACCAAATCCCTTTCTCCC 59.642 52.381 0.00 0.00 0.00 4.30
236 237 2.899303 TCCACCAAATCCCTTTCTCC 57.101 50.000 0.00 0.00 0.00 3.71
237 238 5.510430 ACTATTCCACCAAATCCCTTTCTC 58.490 41.667 0.00 0.00 0.00 2.87
238 239 5.536497 ACTATTCCACCAAATCCCTTTCT 57.464 39.130 0.00 0.00 0.00 2.52
239 240 5.714806 TCAACTATTCCACCAAATCCCTTTC 59.285 40.000 0.00 0.00 0.00 2.62
240 241 5.650283 TCAACTATTCCACCAAATCCCTTT 58.350 37.500 0.00 0.00 0.00 3.11
241 242 5.269554 TCAACTATTCCACCAAATCCCTT 57.730 39.130 0.00 0.00 0.00 3.95
242 243 4.946160 TCAACTATTCCACCAAATCCCT 57.054 40.909 0.00 0.00 0.00 4.20
243 244 6.544928 AAATCAACTATTCCACCAAATCCC 57.455 37.500 0.00 0.00 0.00 3.85
244 245 9.533253 CAATAAATCAACTATTCCACCAAATCC 57.467 33.333 0.00 0.00 0.00 3.01
245 246 9.034544 GCAATAAATCAACTATTCCACCAAATC 57.965 33.333 0.00 0.00 0.00 2.17
246 247 8.761689 AGCAATAAATCAACTATTCCACCAAAT 58.238 29.630 0.00 0.00 0.00 2.32
247 248 8.133024 AGCAATAAATCAACTATTCCACCAAA 57.867 30.769 0.00 0.00 0.00 3.28
248 249 7.716799 AGCAATAAATCAACTATTCCACCAA 57.283 32.000 0.00 0.00 0.00 3.67
249 250 7.716799 AAGCAATAAATCAACTATTCCACCA 57.283 32.000 0.00 0.00 0.00 4.17
250 251 9.736023 CTTAAGCAATAAATCAACTATTCCACC 57.264 33.333 0.00 0.00 0.00 4.61
251 252 9.237846 GCTTAAGCAATAAATCAACTATTCCAC 57.762 33.333 22.59 0.00 41.59 4.02
252 253 8.413229 GGCTTAAGCAATAAATCAACTATTCCA 58.587 33.333 27.83 0.00 44.36 3.53
253 254 8.633561 AGGCTTAAGCAATAAATCAACTATTCC 58.366 33.333 27.83 4.84 44.36 3.01
254 255 9.670719 GAGGCTTAAGCAATAAATCAACTATTC 57.329 33.333 27.83 5.17 44.36 1.75
255 256 8.345565 CGAGGCTTAAGCAATAAATCAACTATT 58.654 33.333 27.83 0.00 44.36 1.73
256 257 7.499232 ACGAGGCTTAAGCAATAAATCAACTAT 59.501 33.333 27.83 2.41 44.36 2.12
257 258 6.821665 ACGAGGCTTAAGCAATAAATCAACTA 59.178 34.615 27.83 0.00 44.36 2.24
258 259 5.648092 ACGAGGCTTAAGCAATAAATCAACT 59.352 36.000 27.83 11.95 44.36 3.16
259 260 5.739161 CACGAGGCTTAAGCAATAAATCAAC 59.261 40.000 27.83 7.30 44.36 3.18
260 261 5.163663 CCACGAGGCTTAAGCAATAAATCAA 60.164 40.000 27.83 0.00 44.36 2.57
261 262 4.335315 CCACGAGGCTTAAGCAATAAATCA 59.665 41.667 27.83 0.00 44.36 2.57
262 263 4.261197 CCCACGAGGCTTAAGCAATAAATC 60.261 45.833 27.83 13.87 44.36 2.17
263 264 3.632145 CCCACGAGGCTTAAGCAATAAAT 59.368 43.478 27.83 6.98 44.36 1.40
264 265 3.013921 CCCACGAGGCTTAAGCAATAAA 58.986 45.455 27.83 0.00 44.36 1.40
265 266 2.639065 CCCACGAGGCTTAAGCAATAA 58.361 47.619 27.83 0.00 44.36 1.40
266 267 2.325583 CCCACGAGGCTTAAGCAATA 57.674 50.000 27.83 0.00 44.36 1.90
267 268 3.175133 CCCACGAGGCTTAAGCAAT 57.825 52.632 27.83 16.28 44.36 3.56
268 269 4.713946 CCCACGAGGCTTAAGCAA 57.286 55.556 27.83 0.00 44.36 3.91
277 278 5.141182 ACTCCTATATATATGCCCACGAGG 58.859 45.833 5.44 2.71 39.47 4.63
278 279 6.771267 TGTACTCCTATATATATGCCCACGAG 59.229 42.308 5.44 4.01 0.00 4.18
279 280 6.665695 TGTACTCCTATATATATGCCCACGA 58.334 40.000 5.44 0.00 0.00 4.35
280 281 6.954487 TGTACTCCTATATATATGCCCACG 57.046 41.667 5.44 0.00 0.00 4.94
281 282 8.924303 TCATTGTACTCCTATATATATGCCCAC 58.076 37.037 5.44 0.00 0.00 4.61
282 283 9.674705 ATCATTGTACTCCTATATATATGCCCA 57.325 33.333 5.44 0.00 0.00 5.36
292 293 9.521841 CTCCAAGTAGATCATTGTACTCCTATA 57.478 37.037 0.00 0.00 31.09 1.31
293 294 8.007742 ACTCCAAGTAGATCATTGTACTCCTAT 58.992 37.037 0.00 0.00 31.09 2.57
294 295 7.355101 ACTCCAAGTAGATCATTGTACTCCTA 58.645 38.462 0.00 0.00 31.09 2.94
295 296 6.198639 ACTCCAAGTAGATCATTGTACTCCT 58.801 40.000 0.00 0.00 31.09 3.69
296 297 6.472686 ACTCCAAGTAGATCATTGTACTCC 57.527 41.667 0.00 0.00 31.09 3.85
297 298 7.997482 TGTACTCCAAGTAGATCATTGTACTC 58.003 38.462 0.00 0.00 31.09 2.59
298 299 7.956328 TGTACTCCAAGTAGATCATTGTACT 57.044 36.000 0.00 0.00 33.59 2.73
299 300 8.635877 CTTGTACTCCAAGTAGATCATTGTAC 57.364 38.462 0.00 0.00 44.64 2.90
313 314 5.105106 TGTTCTGACTTGTCTTGTACTCCAA 60.105 40.000 2.35 0.00 0.00 3.53
314 315 4.404394 TGTTCTGACTTGTCTTGTACTCCA 59.596 41.667 2.35 0.00 0.00 3.86
315 316 4.945246 TGTTCTGACTTGTCTTGTACTCC 58.055 43.478 2.35 0.00 0.00 3.85
316 317 6.903883 TTTGTTCTGACTTGTCTTGTACTC 57.096 37.500 2.35 0.00 0.00 2.59
317 318 6.483640 GGATTTGTTCTGACTTGTCTTGTACT 59.516 38.462 2.35 0.00 0.00 2.73
318 319 6.483640 AGGATTTGTTCTGACTTGTCTTGTAC 59.516 38.462 2.35 0.00 0.00 2.90
319 320 6.591935 AGGATTTGTTCTGACTTGTCTTGTA 58.408 36.000 2.35 0.00 0.00 2.41
320 321 5.440610 AGGATTTGTTCTGACTTGTCTTGT 58.559 37.500 2.35 0.00 0.00 3.16
321 322 6.708054 ACTAGGATTTGTTCTGACTTGTCTTG 59.292 38.462 0.00 0.00 0.00 3.02
322 323 6.831976 ACTAGGATTTGTTCTGACTTGTCTT 58.168 36.000 0.00 0.00 0.00 3.01
323 324 6.268847 AGACTAGGATTTGTTCTGACTTGTCT 59.731 38.462 0.00 0.00 36.64 3.41
324 325 6.459923 AGACTAGGATTTGTTCTGACTTGTC 58.540 40.000 0.00 0.00 33.18 3.18
325 326 6.426646 AGACTAGGATTTGTTCTGACTTGT 57.573 37.500 0.00 0.00 0.00 3.16
326 327 8.474025 AGATAGACTAGGATTTGTTCTGACTTG 58.526 37.037 0.00 0.00 0.00 3.16
327 328 8.602472 AGATAGACTAGGATTTGTTCTGACTT 57.398 34.615 0.00 0.00 0.00 3.01
328 329 7.012894 CGAGATAGACTAGGATTTGTTCTGACT 59.987 40.741 0.00 0.00 0.00 3.41
329 330 7.136119 CGAGATAGACTAGGATTTGTTCTGAC 58.864 42.308 0.00 0.00 0.00 3.51
330 331 6.829298 ACGAGATAGACTAGGATTTGTTCTGA 59.171 38.462 0.00 0.00 0.00 3.27
331 332 7.033530 ACGAGATAGACTAGGATTTGTTCTG 57.966 40.000 0.00 0.00 0.00 3.02
332 333 7.648039 AACGAGATAGACTAGGATTTGTTCT 57.352 36.000 0.00 0.00 0.00 3.01
333 334 8.705048 AAAACGAGATAGACTAGGATTTGTTC 57.295 34.615 0.00 0.00 0.00 3.18
334 335 9.152595 GAAAAACGAGATAGACTAGGATTTGTT 57.847 33.333 0.00 0.00 0.00 2.83
335 336 7.764901 GGAAAAACGAGATAGACTAGGATTTGT 59.235 37.037 0.00 0.00 0.00 2.83
336 337 7.982354 AGGAAAAACGAGATAGACTAGGATTTG 59.018 37.037 0.00 0.00 0.00 2.32
337 338 8.080363 AGGAAAAACGAGATAGACTAGGATTT 57.920 34.615 0.00 0.00 0.00 2.17
338 339 7.663043 AGGAAAAACGAGATAGACTAGGATT 57.337 36.000 0.00 0.00 0.00 3.01
339 340 8.763984 TTAGGAAAAACGAGATAGACTAGGAT 57.236 34.615 0.00 0.00 0.00 3.24
340 341 8.763984 ATTAGGAAAAACGAGATAGACTAGGA 57.236 34.615 0.00 0.00 0.00 2.94
375 376 9.531158 AACTACTACTCCTACTATTTGTTGAGT 57.469 33.333 0.00 0.00 40.37 3.41
488 497 5.335976 GCTTGAATGACCCTAGGAAAACTTG 60.336 44.000 11.48 0.00 0.00 3.16
492 501 4.380843 TGCTTGAATGACCCTAGGAAAA 57.619 40.909 11.48 0.00 0.00 2.29
507 516 5.366460 TGAAAAGCCAATTCATTTGCTTGA 58.634 33.333 10.68 0.00 34.26 3.02
741 2754 2.029918 GCTGAAAGACATGGTTTCCACC 60.030 50.000 16.14 5.21 39.30 4.61
742 2755 2.350772 CGCTGAAAGACATGGTTTCCAC 60.351 50.000 16.14 9.65 32.69 4.02
743 2756 1.879380 CGCTGAAAGACATGGTTTCCA 59.121 47.619 16.14 7.23 34.34 3.53
744 2757 1.880027 ACGCTGAAAGACATGGTTTCC 59.120 47.619 16.14 5.27 34.07 3.13
745 2758 2.290641 ACACGCTGAAAGACATGGTTTC 59.709 45.455 13.32 13.32 34.07 2.78
746 2759 2.033299 CACACGCTGAAAGACATGGTTT 59.967 45.455 0.00 0.00 34.07 3.27
747 2760 1.603802 CACACGCTGAAAGACATGGTT 59.396 47.619 0.00 0.00 34.07 3.67
748 2761 1.229428 CACACGCTGAAAGACATGGT 58.771 50.000 0.00 0.00 34.07 3.55
749 2762 0.110056 GCACACGCTGAAAGACATGG 60.110 55.000 0.00 0.00 34.07 3.66
750 2763 0.587768 TGCACACGCTGAAAGACATG 59.412 50.000 0.00 0.00 39.64 3.21
751 2764 1.466167 GATGCACACGCTGAAAGACAT 59.534 47.619 0.00 0.00 39.64 3.06
752 2765 0.867746 GATGCACACGCTGAAAGACA 59.132 50.000 0.00 0.00 39.64 3.41
753 2766 0.867746 TGATGCACACGCTGAAAGAC 59.132 50.000 0.00 0.00 39.64 3.01
754 2767 0.867746 GTGATGCACACGCTGAAAGA 59.132 50.000 0.00 0.00 39.78 2.52
755 2768 3.373020 GTGATGCACACGCTGAAAG 57.627 52.632 0.00 0.00 39.78 2.62
764 2777 1.294041 TTAGATGGGGGTGATGCACA 58.706 50.000 0.00 0.00 35.86 4.57
765 2778 2.107204 AGATTAGATGGGGGTGATGCAC 59.893 50.000 0.00 0.00 0.00 4.57
766 2779 2.421725 AGATTAGATGGGGGTGATGCA 58.578 47.619 0.00 0.00 0.00 3.96
767 2780 3.515602 AAGATTAGATGGGGGTGATGC 57.484 47.619 0.00 0.00 0.00 3.91
768 2781 6.633325 AGATAAGATTAGATGGGGGTGATG 57.367 41.667 0.00 0.00 0.00 3.07
769 2782 8.940012 ATAAGATAAGATTAGATGGGGGTGAT 57.060 34.615 0.00 0.00 0.00 3.06
770 2783 8.186985 AGATAAGATAAGATTAGATGGGGGTGA 58.813 37.037 0.00 0.00 0.00 4.02
771 2784 8.386012 AGATAAGATAAGATTAGATGGGGGTG 57.614 38.462 0.00 0.00 0.00 4.61
772 2785 8.413821 AGAGATAAGATAAGATTAGATGGGGGT 58.586 37.037 0.00 0.00 0.00 4.95
773 2786 8.852671 AGAGATAAGATAAGATTAGATGGGGG 57.147 38.462 0.00 0.00 0.00 5.40
774 2787 9.713684 AGAGAGATAAGATAAGATTAGATGGGG 57.286 37.037 0.00 0.00 0.00 4.96
778 2791 9.995594 AGGCAGAGAGATAAGATAAGATTAGAT 57.004 33.333 0.00 0.00 0.00 1.98
779 2792 9.821240 AAGGCAGAGAGATAAGATAAGATTAGA 57.179 33.333 0.00 0.00 0.00 2.10
780 2793 9.859427 CAAGGCAGAGAGATAAGATAAGATTAG 57.141 37.037 0.00 0.00 0.00 1.73
781 2794 9.373450 ACAAGGCAGAGAGATAAGATAAGATTA 57.627 33.333 0.00 0.00 0.00 1.75
782 2795 8.261349 ACAAGGCAGAGAGATAAGATAAGATT 57.739 34.615 0.00 0.00 0.00 2.40
783 2796 7.729881 AGACAAGGCAGAGAGATAAGATAAGAT 59.270 37.037 0.00 0.00 0.00 2.40
784 2797 7.014134 CAGACAAGGCAGAGAGATAAGATAAGA 59.986 40.741 0.00 0.00 0.00 2.10
785 2798 7.147312 CAGACAAGGCAGAGAGATAAGATAAG 58.853 42.308 0.00 0.00 0.00 1.73
786 2799 6.041409 CCAGACAAGGCAGAGAGATAAGATAA 59.959 42.308 0.00 0.00 0.00 1.75
787 2800 5.538053 CCAGACAAGGCAGAGAGATAAGATA 59.462 44.000 0.00 0.00 0.00 1.98
788 2801 4.344679 CCAGACAAGGCAGAGAGATAAGAT 59.655 45.833 0.00 0.00 0.00 2.40
789 2802 3.703556 CCAGACAAGGCAGAGAGATAAGA 59.296 47.826 0.00 0.00 0.00 2.10
790 2803 3.450457 ACCAGACAAGGCAGAGAGATAAG 59.550 47.826 0.00 0.00 0.00 1.73
791 2804 3.445008 ACCAGACAAGGCAGAGAGATAA 58.555 45.455 0.00 0.00 0.00 1.75
792 2805 3.027412 GACCAGACAAGGCAGAGAGATA 58.973 50.000 0.00 0.00 0.00 1.98
793 2806 1.830477 GACCAGACAAGGCAGAGAGAT 59.170 52.381 0.00 0.00 0.00 2.75
794 2807 1.261480 GACCAGACAAGGCAGAGAGA 58.739 55.000 0.00 0.00 0.00 3.10
795 2808 0.108898 CGACCAGACAAGGCAGAGAG 60.109 60.000 0.00 0.00 0.00 3.20
796 2809 0.827925 ACGACCAGACAAGGCAGAGA 60.828 55.000 0.00 0.00 0.00 3.10
797 2810 0.888619 TACGACCAGACAAGGCAGAG 59.111 55.000 0.00 0.00 0.00 3.35
798 2811 1.334160 TTACGACCAGACAAGGCAGA 58.666 50.000 0.00 0.00 0.00 4.26
799 2812 2.069273 CTTTACGACCAGACAAGGCAG 58.931 52.381 0.00 0.00 0.00 4.85
800 2813 1.270625 CCTTTACGACCAGACAAGGCA 60.271 52.381 0.00 0.00 0.00 4.75
801 2814 1.001633 TCCTTTACGACCAGACAAGGC 59.998 52.381 0.00 0.00 34.59 4.35
802 2815 2.036733 TGTCCTTTACGACCAGACAAGG 59.963 50.000 0.00 0.00 34.68 3.61
803 2816 3.380479 TGTCCTTTACGACCAGACAAG 57.620 47.619 0.00 0.00 34.68 3.16
818 2831 0.831711 GTGGGCCATGGTTTTGTCCT 60.832 55.000 10.70 0.00 0.00 3.85
849 2868 2.508887 GCTGCACCTCTCGCTCTG 60.509 66.667 0.00 0.00 0.00 3.35
860 2879 4.634133 TGCTTGCTTGCGCTGCAC 62.634 61.111 23.69 15.67 38.71 4.57
864 2883 1.952635 GCTTTTGCTTGCTTGCGCT 60.953 52.632 9.73 0.00 43.35 5.92
894 2959 1.407618 GAAACCGGGTGCTTTCAGTTT 59.592 47.619 6.32 0.00 0.00 2.66
895 2960 1.029681 GAAACCGGGTGCTTTCAGTT 58.970 50.000 6.32 0.00 0.00 3.16
897 2962 1.318576 AAGAAACCGGGTGCTTTCAG 58.681 50.000 7.01 0.00 0.00 3.02
898 2963 1.770294 AAAGAAACCGGGTGCTTTCA 58.230 45.000 20.60 0.00 0.00 2.69
899 2964 2.882927 AAAAGAAACCGGGTGCTTTC 57.117 45.000 26.10 15.80 30.83 2.62
925 2990 2.395360 CGGCCGCGGATCTCAAAAA 61.395 57.895 33.48 0.00 0.00 1.94
926 2991 2.817834 CGGCCGCGGATCTCAAAA 60.818 61.111 33.48 0.00 0.00 2.44
1003 3075 6.734137 TGAATTGATACTGGTTTGTGTTGAC 58.266 36.000 0.00 0.00 0.00 3.18
1076 3155 4.090819 TGTATGGTAGTAGTGGACTTGCA 58.909 43.478 0.00 0.00 39.81 4.08
1156 3238 1.757423 GCAGCCATCTCTCCTCCTCC 61.757 65.000 0.00 0.00 0.00 4.30
1157 3239 0.760189 AGCAGCCATCTCTCCTCCTC 60.760 60.000 0.00 0.00 0.00 3.71
1158 3240 0.760189 GAGCAGCCATCTCTCCTCCT 60.760 60.000 0.00 0.00 0.00 3.69
1245 3327 1.592223 GTAGTTCCAGCGGCAGAGT 59.408 57.895 1.45 0.00 0.00 3.24
1285 3367 2.123897 AACGTTGGCCTTGGCTGT 60.124 55.556 11.71 3.02 0.00 4.40
1380 3468 2.364317 CTCAGCCCCTCCTCGGAA 60.364 66.667 0.00 0.00 33.16 4.30
1381 3469 4.465446 CCTCAGCCCCTCCTCGGA 62.465 72.222 0.00 0.00 33.16 4.55
1453 3541 1.705337 CGAACACAAGCGCCCCTATG 61.705 60.000 2.29 0.00 0.00 2.23
1454 3542 1.449601 CGAACACAAGCGCCCCTAT 60.450 57.895 2.29 0.00 0.00 2.57
1456 3544 3.767630 AACGAACACAAGCGCCCCT 62.768 57.895 2.29 0.00 0.00 4.79
1457 3545 3.284449 AACGAACACAAGCGCCCC 61.284 61.111 2.29 0.00 0.00 5.80
1458 3546 2.051345 CAACGAACACAAGCGCCC 60.051 61.111 2.29 0.00 0.00 6.13
1459 3547 2.725815 GCAACGAACACAAGCGCC 60.726 61.111 2.29 0.00 0.00 6.53
1460 3548 2.005537 CTGCAACGAACACAAGCGC 61.006 57.895 0.00 0.00 0.00 5.92
1461 3549 2.005537 GCTGCAACGAACACAAGCG 61.006 57.895 0.00 0.00 0.00 4.68
1491 3583 1.204704 CTCAGGCCATGTCTTCGTACA 59.795 52.381 5.01 0.00 0.00 2.90
1493 3585 1.751351 CTCTCAGGCCATGTCTTCGTA 59.249 52.381 5.01 0.00 0.00 3.43
1495 3587 0.820226 TCTCTCAGGCCATGTCTTCG 59.180 55.000 5.01 0.00 0.00 3.79
1497 3589 1.949799 AGTCTCTCAGGCCATGTCTT 58.050 50.000 5.01 0.00 0.00 3.01
1512 3604 0.401395 TGGGGACAACCAGGAAGTCT 60.401 55.000 13.39 0.00 42.91 3.24
1514 3606 0.405585 CATGGGGACAACCAGGAAGT 59.594 55.000 0.00 0.00 44.73 3.01
1515 3607 3.271250 CATGGGGACAACCAGGAAG 57.729 57.895 0.00 0.00 44.73 3.46
1525 3617 2.702592 TTACAACCGATCATGGGGAC 57.297 50.000 5.54 0.00 0.00 4.46
1526 3618 2.841266 TCTTTACAACCGATCATGGGGA 59.159 45.455 5.54 0.00 0.00 4.81
1527 3619 3.275617 TCTTTACAACCGATCATGGGG 57.724 47.619 0.00 0.00 0.00 4.96
1531 5988 6.826668 TCATGGTATCTTTACAACCGATCAT 58.173 36.000 0.00 0.00 35.98 2.45
1534 5991 6.826668 TCATCATGGTATCTTTACAACCGAT 58.173 36.000 0.00 0.00 35.98 4.18
1537 5994 8.509690 CATCATCATCATGGTATCTTTACAACC 58.490 37.037 0.00 0.00 0.00 3.77
1538 5995 9.276590 TCATCATCATCATGGTATCTTTACAAC 57.723 33.333 0.00 0.00 0.00 3.32
1553 6010 5.840243 AGGCGAAATTTTCATCATCATCA 57.160 34.783 9.66 0.00 0.00 3.07
1599 6062 6.615088 ACAAATAGTCAAAGATGCACATGAC 58.385 36.000 0.00 12.55 41.88 3.06
1638 6101 2.041350 TCTCCCGGAGTAACTCTCAACT 59.959 50.000 14.36 0.00 44.40 3.16
1642 6105 1.026584 GCTCTCCCGGAGTAACTCTC 58.973 60.000 14.36 0.00 43.62 3.20
1653 6116 1.954362 CTCCCTGAGTTGCTCTCCCG 61.954 65.000 6.94 0.00 42.12 5.14
1671 6134 0.461961 GTATGCTTCTCACCTCGCCT 59.538 55.000 0.00 0.00 0.00 5.52
1672 6135 0.175760 TGTATGCTTCTCACCTCGCC 59.824 55.000 0.00 0.00 0.00 5.54
1675 6138 4.997395 TGTTTTCTGTATGCTTCTCACCTC 59.003 41.667 0.00 0.00 0.00 3.85
1698 6161 2.359230 GGCGGCTGAACTTGCTCT 60.359 61.111 0.00 0.00 0.00 4.09
1703 6166 0.107831 TTGTACAGGCGGCTGAACTT 59.892 50.000 41.51 23.61 0.00 2.66
1705 6168 1.664151 GTATTGTACAGGCGGCTGAAC 59.336 52.381 41.51 23.84 0.00 3.18
1714 6177 5.768164 AGAGTTTTGGGTTGTATTGTACAGG 59.232 40.000 0.00 0.00 40.24 4.00
1722 6185 3.561143 TGTGCAGAGTTTTGGGTTGTAT 58.439 40.909 0.00 0.00 0.00 2.29
1723 6186 3.006112 TGTGCAGAGTTTTGGGTTGTA 57.994 42.857 0.00 0.00 0.00 2.41
1724 6187 1.846007 TGTGCAGAGTTTTGGGTTGT 58.154 45.000 0.00 0.00 0.00 3.32
1725 6188 2.957491 TTGTGCAGAGTTTTGGGTTG 57.043 45.000 0.00 0.00 0.00 3.77
1726 6189 2.168313 CCTTTGTGCAGAGTTTTGGGTT 59.832 45.455 0.00 0.00 0.00 4.11
1727 6190 1.756538 CCTTTGTGCAGAGTTTTGGGT 59.243 47.619 0.00 0.00 0.00 4.51
1728 6191 2.031120 TCCTTTGTGCAGAGTTTTGGG 58.969 47.619 0.00 0.00 0.00 4.12
1729 6192 3.799281 TTCCTTTGTGCAGAGTTTTGG 57.201 42.857 0.00 0.00 0.00 3.28
1730 6193 6.421801 CCTTTATTCCTTTGTGCAGAGTTTTG 59.578 38.462 0.00 0.00 0.00 2.44
1731 6194 6.323739 TCCTTTATTCCTTTGTGCAGAGTTTT 59.676 34.615 0.00 0.00 0.00 2.43
1732 6195 5.833131 TCCTTTATTCCTTTGTGCAGAGTTT 59.167 36.000 0.00 0.00 0.00 2.66
1733 6196 5.385198 TCCTTTATTCCTTTGTGCAGAGTT 58.615 37.500 0.00 0.00 0.00 3.01
1734 6197 4.985538 TCCTTTATTCCTTTGTGCAGAGT 58.014 39.130 0.00 0.00 0.00 3.24
1735 6198 7.050377 TCTATCCTTTATTCCTTTGTGCAGAG 58.950 38.462 0.00 0.00 0.00 3.35
1736 6199 6.957631 TCTATCCTTTATTCCTTTGTGCAGA 58.042 36.000 0.00 0.00 0.00 4.26
1737 6200 7.475840 GTTCTATCCTTTATTCCTTTGTGCAG 58.524 38.462 0.00 0.00 0.00 4.41
1738 6201 6.093495 CGTTCTATCCTTTATTCCTTTGTGCA 59.907 38.462 0.00 0.00 0.00 4.57
1739 6202 6.458342 CCGTTCTATCCTTTATTCCTTTGTGC 60.458 42.308 0.00 0.00 0.00 4.57
1740 6203 6.821665 TCCGTTCTATCCTTTATTCCTTTGTG 59.178 38.462 0.00 0.00 0.00 3.33
1741 6204 6.954232 TCCGTTCTATCCTTTATTCCTTTGT 58.046 36.000 0.00 0.00 0.00 2.83
1742 6205 7.934120 AGATCCGTTCTATCCTTTATTCCTTTG 59.066 37.037 0.00 0.00 30.96 2.77
1743 6206 8.035448 AGATCCGTTCTATCCTTTATTCCTTT 57.965 34.615 0.00 0.00 30.96 3.11
1744 6207 7.619512 AGATCCGTTCTATCCTTTATTCCTT 57.380 36.000 0.00 0.00 30.96 3.36
1745 6208 7.445945 CAAGATCCGTTCTATCCTTTATTCCT 58.554 38.462 0.00 0.00 33.05 3.36
1746 6209 6.651225 CCAAGATCCGTTCTATCCTTTATTCC 59.349 42.308 0.00 0.00 33.05 3.01
1747 6210 6.147985 GCCAAGATCCGTTCTATCCTTTATTC 59.852 42.308 0.00 0.00 33.05 1.75
1748 6211 5.998363 GCCAAGATCCGTTCTATCCTTTATT 59.002 40.000 0.00 0.00 33.05 1.40
1749 6212 5.552178 GCCAAGATCCGTTCTATCCTTTAT 58.448 41.667 0.00 0.00 33.05 1.40
1750 6213 4.500887 CGCCAAGATCCGTTCTATCCTTTA 60.501 45.833 0.00 0.00 33.05 1.85
1751 6214 3.741388 CGCCAAGATCCGTTCTATCCTTT 60.741 47.826 0.00 0.00 33.05 3.11
1752 6215 2.224066 CGCCAAGATCCGTTCTATCCTT 60.224 50.000 0.00 0.00 33.05 3.36
1753 6216 1.341531 CGCCAAGATCCGTTCTATCCT 59.658 52.381 0.00 0.00 33.05 3.24
1754 6217 1.340248 TCGCCAAGATCCGTTCTATCC 59.660 52.381 0.00 0.00 33.05 2.59
1755 6218 2.795175 TCGCCAAGATCCGTTCTATC 57.205 50.000 0.00 0.00 33.05 2.08
1756 6219 3.572682 TGTATCGCCAAGATCCGTTCTAT 59.427 43.478 0.00 0.00 40.66 1.98
1757 6220 2.953648 TGTATCGCCAAGATCCGTTCTA 59.046 45.455 0.00 0.00 40.66 2.10
1758 6221 1.754803 TGTATCGCCAAGATCCGTTCT 59.245 47.619 0.00 0.00 40.66 3.01
1759 6222 1.859080 GTGTATCGCCAAGATCCGTTC 59.141 52.381 0.00 0.00 40.66 3.95
1760 6223 1.472728 GGTGTATCGCCAAGATCCGTT 60.473 52.381 0.00 0.00 40.66 4.44
1761 6224 0.104304 GGTGTATCGCCAAGATCCGT 59.896 55.000 0.00 0.00 40.66 4.69
1762 6225 0.600255 GGGTGTATCGCCAAGATCCG 60.600 60.000 1.84 0.00 40.66 4.18
1763 6226 0.600255 CGGGTGTATCGCCAAGATCC 60.600 60.000 1.84 0.00 40.66 3.36
1764 6227 0.600255 CCGGGTGTATCGCCAAGATC 60.600 60.000 0.00 0.00 40.66 2.75
1765 6228 1.445942 CCGGGTGTATCGCCAAGAT 59.554 57.895 0.00 0.00 43.19 2.40
1766 6229 2.897207 CCGGGTGTATCGCCAAGA 59.103 61.111 0.00 0.00 35.42 3.02
1767 6230 2.895372 GCCGGGTGTATCGCCAAG 60.895 66.667 2.18 0.00 35.42 3.61
1768 6231 3.395702 AGCCGGGTGTATCGCCAA 61.396 61.111 4.72 0.00 35.42 4.52
1769 6232 4.155733 CAGCCGGGTGTATCGCCA 62.156 66.667 25.51 0.00 35.42 5.69
1772 6235 4.910585 GGGCAGCCGGGTGTATCG 62.911 72.222 32.48 9.59 0.00 2.92
1773 6236 3.462199 GAGGGCAGCCGGGTGTATC 62.462 68.421 32.48 23.12 0.00 2.24
1795 6258 5.406649 AGTTGATCAGACAAGACGAAGATC 58.593 41.667 0.00 0.00 34.11 2.75
1803 6266 4.299155 GTGTTCGAGTTGATCAGACAAGA 58.701 43.478 0.00 0.00 0.00 3.02
1807 6270 3.246619 GAGGTGTTCGAGTTGATCAGAC 58.753 50.000 0.00 0.00 0.00 3.51
1853 6316 1.260561 GAACGCGACGCCATAATCATT 59.739 47.619 15.93 0.00 0.00 2.57
1888 6351 4.456535 TCCGAATCAAAACAACTGGAGAA 58.543 39.130 0.00 0.00 0.00 2.87
1931 6394 5.591099 CAACAGAAAGTACTTGCAACCAAT 58.409 37.500 16.18 0.00 0.00 3.16
1983 6446 1.893315 TCCCTATCCCTTGAACCCTG 58.107 55.000 0.00 0.00 0.00 4.45
2012 6475 2.982130 CCTTAGTGGCGACTGGCT 59.018 61.111 12.14 0.00 42.94 4.75
2032 6495 9.522804 AAGAACATATTTAGAGAATGACGACTC 57.477 33.333 0.00 0.00 0.00 3.36
2079 6543 1.499056 GATGTGCTTCACTGTGCCG 59.501 57.895 2.12 0.00 35.11 5.69
2081 6545 1.154338 GCGATGTGCTTCACTGTGC 60.154 57.895 2.12 0.00 41.73 4.57
2084 6548 1.198408 ACATTGCGATGTGCTTCACTG 59.802 47.619 19.06 0.00 44.64 3.66
2098 6562 0.385473 CGTTTCCACCGACACATTGC 60.385 55.000 0.00 0.00 0.00 3.56
2128 6593 1.139853 GCAGAAGGGATCCTCGTGATT 59.860 52.381 12.58 0.00 32.41 2.57
2171 6638 4.578105 GCTAACTACTAGACCCGCTCTTTA 59.422 45.833 0.00 0.00 0.00 1.85
2211 6679 3.520862 CTACGCGGCCCGAACCTA 61.521 66.667 18.74 2.00 41.02 3.08
2255 6724 9.950496 AGAACTCAAGAACACTCAAATATACAT 57.050 29.630 0.00 0.00 0.00 2.29
2308 6777 4.283467 TGAGAGAGGATTCGGACTTTTTGA 59.717 41.667 0.00 0.00 0.00 2.69
2379 6848 1.213296 ACTTTCCACCTCCTGTGTGT 58.787 50.000 0.00 0.00 43.85 3.72
2457 6928 6.352222 CCTGATAAAGCAAGAGGAGACCTAAA 60.352 42.308 0.00 0.00 31.76 1.85
2464 6935 3.868077 CGTTCCTGATAAAGCAAGAGGAG 59.132 47.826 0.00 0.00 34.32 3.69
2480 6951 0.604511 CGGGCTTTGTTACCGTTCCT 60.605 55.000 0.00 0.00 42.53 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.