Multiple sequence alignment - TraesCS2D01G533500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G533500 chr2D 100.000 2270 0 0 1 2270 617991157 617993426 0.000000e+00 4193.0
1 TraesCS2D01G533500 chr2D 89.510 286 25 3 990 1270 617973039 617973324 7.710000e-95 357.0
2 TraesCS2D01G533500 chr2D 89.474 285 24 4 992 1270 617957691 617957975 2.770000e-94 355.0
3 TraesCS2D01G533500 chr2D 89.247 279 27 2 997 1272 587111820 587111542 1.670000e-91 346.0
4 TraesCS2D01G533500 chr2D 88.571 280 29 2 992 1268 617941878 617942157 1.000000e-88 337.0
5 TraesCS2D01G533500 chr2D 76.271 177 30 10 636 810 587107807 587107641 1.440000e-12 84.2
6 TraesCS2D01G533500 chr2B 88.660 970 69 11 602 1554 753973686 753974631 0.000000e+00 1144.0
7 TraesCS2D01G533500 chr2B 89.789 284 26 1 992 1272 708863276 708862993 5.960000e-96 361.0
8 TraesCS2D01G533500 chr2B 88.693 283 29 1 991 1270 754001286 754001568 2.160000e-90 342.0
9 TraesCS2D01G533500 chr2B 87.589 282 32 3 992 1270 753952468 753952749 7.820000e-85 324.0
10 TraesCS2D01G533500 chr2B 79.381 194 31 8 672 858 753949769 753949960 6.580000e-26 128.0
11 TraesCS2D01G533500 chr2B 86.567 67 8 1 744 810 708826918 708826853 3.130000e-09 73.1
12 TraesCS2D01G533500 chr2A 87.052 1004 59 18 696 1667 748524148 748525112 0.000000e+00 1068.0
13 TraesCS2D01G533500 chr2A 89.587 605 59 4 1 604 585921570 585920969 0.000000e+00 765.0
14 TraesCS2D01G533500 chr2A 96.629 89 2 1 1878 1966 748525107 748525194 1.820000e-31 147.0
15 TraesCS2D01G533500 chr1D 91.240 605 46 5 1 604 426648572 426647974 0.000000e+00 817.0
16 TraesCS2D01G533500 chr1D 90.865 613 48 5 1 606 311752722 311752111 0.000000e+00 815.0
17 TraesCS2D01G533500 chr7A 90.264 606 56 3 2 606 713734617 713734014 0.000000e+00 789.0
18 TraesCS2D01G533500 chr6D 90.248 605 53 4 1 604 328743317 328743916 0.000000e+00 785.0
19 TraesCS2D01G533500 chr6D 89.474 608 59 4 1 606 446561391 446561995 0.000000e+00 763.0
20 TraesCS2D01G533500 chr3D 89.803 608 60 2 1 606 512532409 512531802 0.000000e+00 778.0
21 TraesCS2D01G533500 chr7D 89.934 606 56 4 2 606 551605765 551605164 0.000000e+00 776.0
22 TraesCS2D01G533500 chr7D 89.638 608 59 3 1 607 57537553 57536949 0.000000e+00 771.0
23 TraesCS2D01G533500 chr5B 93.694 222 13 1 1662 1882 405557250 405557471 4.670000e-87 331.0
24 TraesCS2D01G533500 chr4B 93.665 221 13 1 1662 1881 68116561 68116781 1.680000e-86 329.0
25 TraesCS2D01G533500 chrUn 93.274 223 14 1 1658 1879 340113116 340113338 6.050000e-86 327.0
26 TraesCS2D01G533500 chr5D 92.576 229 15 2 1653 1879 515982804 515982576 6.050000e-86 327.0
27 TraesCS2D01G533500 chr3B 92.544 228 16 1 1662 1888 775688070 775687843 2.170000e-85 326.0
28 TraesCS2D01G533500 chr1B 92.920 226 13 3 1655 1879 323632427 323632650 2.170000e-85 326.0
29 TraesCS2D01G533500 chr1B 92.208 231 15 3 1652 1879 626133810 626134040 7.820000e-85 324.0
30 TraesCS2D01G533500 chr1B 91.810 232 17 2 1651 1882 66927776 66928005 2.810000e-84 322.0
31 TraesCS2D01G533500 chr6B 91.845 233 16 2 1661 1891 12748846 12748615 2.810000e-84 322.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G533500 chr2D 617991157 617993426 2269 False 4193.0 4193 100.0000 1 2270 1 chr2D.!!$F4 2269
1 TraesCS2D01G533500 chr2D 587107641 587111820 4179 True 215.1 346 82.7590 636 1272 2 chr2D.!!$R1 636
2 TraesCS2D01G533500 chr2B 753973686 753974631 945 False 1144.0 1144 88.6600 602 1554 1 chr2B.!!$F1 952
3 TraesCS2D01G533500 chr2B 753949769 753952749 2980 False 226.0 324 83.4850 672 1270 2 chr2B.!!$F3 598
4 TraesCS2D01G533500 chr2A 585920969 585921570 601 True 765.0 765 89.5870 1 604 1 chr2A.!!$R1 603
5 TraesCS2D01G533500 chr2A 748524148 748525194 1046 False 607.5 1068 91.8405 696 1966 2 chr2A.!!$F1 1270
6 TraesCS2D01G533500 chr1D 426647974 426648572 598 True 817.0 817 91.2400 1 604 1 chr1D.!!$R2 603
7 TraesCS2D01G533500 chr1D 311752111 311752722 611 True 815.0 815 90.8650 1 606 1 chr1D.!!$R1 605
8 TraesCS2D01G533500 chr7A 713734014 713734617 603 True 789.0 789 90.2640 2 606 1 chr7A.!!$R1 604
9 TraesCS2D01G533500 chr6D 328743317 328743916 599 False 785.0 785 90.2480 1 604 1 chr6D.!!$F1 603
10 TraesCS2D01G533500 chr6D 446561391 446561995 604 False 763.0 763 89.4740 1 606 1 chr6D.!!$F2 605
11 TraesCS2D01G533500 chr3D 512531802 512532409 607 True 778.0 778 89.8030 1 606 1 chr3D.!!$R1 605
12 TraesCS2D01G533500 chr7D 551605164 551605765 601 True 776.0 776 89.9340 2 606 1 chr7D.!!$R2 604
13 TraesCS2D01G533500 chr7D 57536949 57537553 604 True 771.0 771 89.6380 1 607 1 chr7D.!!$R1 606

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
572 586 0.320596 ACGGTTATTTTGCGGGTCGA 60.321 50.0 0.0 0.0 0.0 4.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1992 6707 0.037303 CCAGAGGAGCAACACATGGT 59.963 55.0 0.0 0.0 43.97 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
272 274 4.913126 GGTGACGAGGGACATCAC 57.087 61.111 0.00 0.00 41.68 3.06
343 346 2.033448 GTGACGGGGCAATGGTGA 59.967 61.111 0.00 0.00 0.00 4.02
348 351 2.034999 GGGGCAATGGTGACGGAA 59.965 61.111 0.00 0.00 31.03 4.30
439 448 2.444895 GGATCGTCCTCCCAGCCT 60.445 66.667 0.00 0.00 32.53 4.58
456 465 1.751924 GCCTGTGAATCTAGAGGTCGT 59.248 52.381 0.00 0.00 33.80 4.34
508 522 0.825410 TTAAGGGTCGGCTGCGAATA 59.175 50.000 0.00 0.00 0.00 1.75
523 537 1.332686 CGAATACGGTGTCTGATCGGA 59.667 52.381 0.00 0.00 35.72 4.55
532 546 3.139077 GTGTCTGATCGGACAGGTTTTT 58.861 45.455 32.90 0.00 45.31 1.94
572 586 0.320596 ACGGTTATTTTGCGGGTCGA 60.321 50.000 0.00 0.00 0.00 4.20
574 588 1.729284 GGTTATTTTGCGGGTCGAGA 58.271 50.000 0.00 0.00 0.00 4.04
578 592 2.444700 ATTTTGCGGGTCGAGACGGT 62.445 55.000 10.24 0.00 0.00 4.83
580 594 2.476534 TTTGCGGGTCGAGACGGTAC 62.477 60.000 10.24 0.00 0.00 3.34
607 621 4.082245 GGGTCTGCTAGAGATGCTCTTATC 60.082 50.000 1.88 0.00 41.50 1.75
615 629 2.556189 GAGATGCTCTTATCTCTGCGGA 59.444 50.000 8.17 0.00 46.12 5.54
622 636 0.530744 TTATCTCTGCGGACTTGCGT 59.469 50.000 0.00 0.00 37.81 5.24
650 664 3.300009 GAAACTGTCGCAATGGACAAAG 58.700 45.455 6.15 0.08 45.59 2.77
665 679 0.721718 CAAAGCCGCTACTTCTTCCG 59.278 55.000 0.00 0.00 0.00 4.30
686 700 2.841874 CCGGGAATAAACAAAACGACG 58.158 47.619 0.00 0.00 0.00 5.12
714 729 3.650950 AGCCCACTGCACCGGAAT 61.651 61.111 9.46 0.00 44.83 3.01
739 765 1.674221 GCGAGAGGTGAGCAAACTGAT 60.674 52.381 0.00 0.00 0.00 2.90
810 836 0.401738 CTGTTTTCCTCTGGCCCTCA 59.598 55.000 0.00 0.00 0.00 3.86
863 890 6.599244 TCTTCTTCTCATCAACACAAACAAGT 59.401 34.615 0.00 0.00 0.00 3.16
914 953 2.234661 TCCACACTCCACTGCTATCAAG 59.765 50.000 0.00 0.00 0.00 3.02
945 984 1.554160 CAGAGAGTTCAGGCAGACCAT 59.446 52.381 0.00 0.00 39.06 3.55
947 986 2.027377 AGAGAGTTCAGGCAGACCATTG 60.027 50.000 0.00 0.00 39.06 2.82
957 996 0.745486 CAGACCATTGAGCGGCATCA 60.745 55.000 1.45 0.05 0.00 3.07
1032 1075 0.744414 CGAAGGCGTCATGGATGGTT 60.744 55.000 0.55 0.00 0.00 3.67
1068 1111 2.586792 GTGGAGGCGCTCAAGGAT 59.413 61.111 7.64 0.00 31.08 3.24
1102 1145 2.886124 GCTGGAACTACGCGCTCC 60.886 66.667 5.73 8.18 0.00 4.70
1221 3696 0.522180 GACGAGCAGAGAAGACCGAA 59.478 55.000 0.00 0.00 0.00 4.30
1283 3765 6.208402 GGTCCCAATTAGTACTACTAGCTACC 59.792 46.154 0.91 3.78 31.47 3.18
1309 3791 2.351455 GTGTTTTCTCCTAGCTCCAGC 58.649 52.381 0.00 0.00 42.49 4.85
1310 3792 1.977854 TGTTTTCTCCTAGCTCCAGCA 59.022 47.619 0.48 0.00 45.16 4.41
1323 3812 3.262915 AGCTCCAGCATCTGTTAGAAACT 59.737 43.478 0.48 0.00 45.16 2.66
1338 3827 6.037830 TGTTAGAAACTTCTAGCAACAACCAC 59.962 38.462 12.07 1.06 44.45 4.16
1340 3829 1.226746 ACTTCTAGCAACAACCACGC 58.773 50.000 0.00 0.00 0.00 5.34
1342 3831 1.225376 TTCTAGCAACAACCACGCCG 61.225 55.000 0.00 0.00 0.00 6.46
1345 3834 2.926901 TAGCAACAACCACGCCGTGT 62.927 55.000 16.99 1.32 0.00 4.49
1584 6156 0.388907 CCATTTTCCGCCAGCTTGTG 60.389 55.000 0.00 0.00 0.00 3.33
1587 6159 2.074230 TTTTCCGCCAGCTTGTGCAG 62.074 55.000 0.00 0.00 42.74 4.41
1605 6177 6.855836 TGTGCAGATGATAATCAAAACCTTC 58.144 36.000 0.00 0.00 0.00 3.46
1606 6178 6.660521 TGTGCAGATGATAATCAAAACCTTCT 59.339 34.615 0.00 0.00 0.00 2.85
1607 6179 7.177216 TGTGCAGATGATAATCAAAACCTTCTT 59.823 33.333 0.00 0.00 0.00 2.52
1640 6212 5.178809 GCGAATTAGTGTTGTAGGTTCAGTT 59.821 40.000 0.00 0.00 0.00 3.16
1672 6244 8.824756 ACATATGAATATGATACTACCTCCGT 57.175 34.615 10.38 0.00 42.05 4.69
1674 6246 9.126151 CATATGAATATGATACTACCTCCGTCT 57.874 37.037 0.00 0.00 42.05 4.18
1675 6247 7.633193 ATGAATATGATACTACCTCCGTCTC 57.367 40.000 0.00 0.00 0.00 3.36
1676 6248 5.642491 TGAATATGATACTACCTCCGTCTCG 59.358 44.000 0.00 0.00 0.00 4.04
1689 6261 3.438297 CCGTCTCGGTGAATAAGTCAT 57.562 47.619 0.00 0.00 42.73 3.06
1690 6262 3.782046 CCGTCTCGGTGAATAAGTCATT 58.218 45.455 0.00 0.00 42.73 2.57
1691 6263 3.797256 CCGTCTCGGTGAATAAGTCATTC 59.203 47.826 0.00 0.00 42.73 2.67
1692 6264 3.482472 CGTCTCGGTGAATAAGTCATTCG 59.518 47.826 0.00 0.00 45.25 3.34
1700 6272 5.715264 GTGAATAAGTCATTCGCGTAGTTC 58.285 41.667 5.77 0.29 45.25 3.01
1701 6273 5.515626 GTGAATAAGTCATTCGCGTAGTTCT 59.484 40.000 5.77 0.00 45.25 3.01
1703 6275 6.910972 TGAATAAGTCATTCGCGTAGTTCTAG 59.089 38.462 5.77 0.00 45.25 2.43
1704 6276 3.694535 AGTCATTCGCGTAGTTCTAGG 57.305 47.619 5.77 0.00 0.00 3.02
1706 6278 3.065095 AGTCATTCGCGTAGTTCTAGGTC 59.935 47.826 5.77 0.00 0.00 3.85
1707 6279 2.031314 TCATTCGCGTAGTTCTAGGTCG 59.969 50.000 5.77 5.99 0.00 4.79
1708 6280 1.725641 TTCGCGTAGTTCTAGGTCGA 58.274 50.000 5.77 11.56 0.00 4.20
1709 6281 1.945387 TCGCGTAGTTCTAGGTCGAT 58.055 50.000 5.77 0.00 0.00 3.59
1712 6284 2.223611 CGCGTAGTTCTAGGTCGATGAT 59.776 50.000 0.00 0.00 0.00 2.45
1713 6285 3.303857 CGCGTAGTTCTAGGTCGATGATT 60.304 47.826 0.00 0.00 0.00 2.57
1715 6287 5.559608 CGCGTAGTTCTAGGTCGATGATTTA 60.560 44.000 0.00 0.00 0.00 1.40
1717 6289 6.142002 GCGTAGTTCTAGGTCGATGATTTAAC 59.858 42.308 0.00 0.00 0.00 2.01
1718 6290 7.416022 CGTAGTTCTAGGTCGATGATTTAACT 58.584 38.462 0.00 0.00 0.00 2.24
1722 6294 9.357161 AGTTCTAGGTCGATGATTTAACTATCT 57.643 33.333 0.00 0.00 0.00 1.98
1784 6378 9.530633 GAAATTACATCCGTGTAGAAATCTAGT 57.469 33.333 0.00 0.00 41.56 2.57
1789 6383 8.410673 ACATCCGTGTAGAAATCTAGTGATAT 57.589 34.615 0.00 0.00 36.63 1.63
1790 6384 9.516546 ACATCCGTGTAGAAATCTAGTGATATA 57.483 33.333 0.00 0.00 36.63 0.86
1791 6385 9.776158 CATCCGTGTAGAAATCTAGTGATATAC 57.224 37.037 0.00 0.00 31.70 1.47
1840 6434 8.806429 TTAATTGCTCAAATCAATGACCTAGA 57.194 30.769 0.00 0.00 34.67 2.43
1841 6435 7.707624 AATTGCTCAAATCAATGACCTAGAA 57.292 32.000 0.00 0.00 34.67 2.10
1843 6437 5.809001 TGCTCAAATCAATGACCTAGAACT 58.191 37.500 0.00 0.00 0.00 3.01
1844 6438 6.946340 TGCTCAAATCAATGACCTAGAACTA 58.054 36.000 0.00 0.00 0.00 2.24
1845 6439 6.818644 TGCTCAAATCAATGACCTAGAACTAC 59.181 38.462 0.00 0.00 0.00 2.73
1846 6440 6.019479 GCTCAAATCAATGACCTAGAACTACG 60.019 42.308 0.00 0.00 0.00 3.51
1847 6441 6.931838 TCAAATCAATGACCTAGAACTACGT 58.068 36.000 0.00 0.00 0.00 3.57
1848 6442 8.058667 TCAAATCAATGACCTAGAACTACGTA 57.941 34.615 0.00 0.00 0.00 3.57
1870 6464 9.674824 ACGTAAATAACTTATTCATCTAGACGG 57.325 33.333 0.00 0.00 0.00 4.79
1871 6465 9.888878 CGTAAATAACTTATTCATCTAGACGGA 57.111 33.333 0.00 0.00 0.00 4.69
1874 6468 8.480133 AATAACTTATTCATCTAGACGGAGGT 57.520 34.615 0.00 0.00 0.00 3.85
1875 6469 9.584008 AATAACTTATTCATCTAGACGGAGGTA 57.416 33.333 0.00 0.00 0.00 3.08
1876 6470 7.513371 AACTTATTCATCTAGACGGAGGTAG 57.487 40.000 0.00 0.00 0.00 3.18
1878 6472 7.743749 ACTTATTCATCTAGACGGAGGTAGTA 58.256 38.462 0.00 0.00 0.00 1.82
1879 6473 7.879160 ACTTATTCATCTAGACGGAGGTAGTAG 59.121 40.741 0.00 0.00 0.00 2.57
1881 6475 6.737720 TTCATCTAGACGGAGGTAGTAGTA 57.262 41.667 0.00 0.00 0.00 1.82
1882 6476 6.095432 TCATCTAGACGGAGGTAGTAGTAC 57.905 45.833 0.00 0.00 0.00 2.73
1904 6619 8.267894 AGTACAGTATGCATCTTTCCACTATTT 58.732 33.333 0.19 0.00 42.53 1.40
1923 6638 1.207593 GTGCAACCTCACATGCGTC 59.792 57.895 0.00 0.00 45.47 5.19
1957 6672 1.585521 GTCCATCAGACGTACGCGG 60.586 63.158 16.72 9.21 43.45 6.46
1966 6681 0.794605 GACGTACGCGGGACTGTTAC 60.795 60.000 16.72 0.29 43.45 2.50
1967 6682 1.237285 ACGTACGCGGGACTGTTACT 61.237 55.000 16.72 0.00 43.45 2.24
1968 6683 0.726827 CGTACGCGGGACTGTTACTA 59.273 55.000 12.47 0.00 0.00 1.82
1969 6684 1.529826 CGTACGCGGGACTGTTACTAC 60.530 57.143 12.47 0.00 0.00 2.73
1970 6685 1.094785 TACGCGGGACTGTTACTACC 58.905 55.000 12.47 0.00 0.00 3.18
1971 6686 0.895100 ACGCGGGACTGTTACTACCA 60.895 55.000 12.47 0.00 0.00 3.25
1972 6687 0.244450 CGCGGGACTGTTACTACCAA 59.756 55.000 0.00 0.00 0.00 3.67
1973 6688 1.337074 CGCGGGACTGTTACTACCAAA 60.337 52.381 0.00 0.00 0.00 3.28
1974 6689 2.071540 GCGGGACTGTTACTACCAAAC 58.928 52.381 0.00 0.00 0.00 2.93
1975 6690 2.548493 GCGGGACTGTTACTACCAAACA 60.548 50.000 0.00 0.00 35.61 2.83
1976 6691 3.731089 CGGGACTGTTACTACCAAACAA 58.269 45.455 0.00 0.00 36.46 2.83
1977 6692 3.744426 CGGGACTGTTACTACCAAACAAG 59.256 47.826 0.00 0.00 36.46 3.16
1978 6693 3.501062 GGGACTGTTACTACCAAACAAGC 59.499 47.826 0.00 0.00 36.46 4.01
1979 6694 3.185797 GGACTGTTACTACCAAACAAGCG 59.814 47.826 0.00 0.00 36.46 4.68
1980 6695 2.546789 ACTGTTACTACCAAACAAGCGC 59.453 45.455 0.00 0.00 36.46 5.92
1981 6696 2.806244 CTGTTACTACCAAACAAGCGCT 59.194 45.455 2.64 2.64 36.46 5.92
1982 6697 2.546368 TGTTACTACCAAACAAGCGCTG 59.454 45.455 12.58 8.13 34.04 5.18
1983 6698 2.803956 GTTACTACCAAACAAGCGCTGA 59.196 45.455 12.58 0.00 0.00 4.26
1984 6699 1.961793 ACTACCAAACAAGCGCTGAA 58.038 45.000 12.58 0.00 0.00 3.02
1985 6700 2.294074 ACTACCAAACAAGCGCTGAAA 58.706 42.857 12.58 0.00 0.00 2.69
1986 6701 2.290641 ACTACCAAACAAGCGCTGAAAG 59.709 45.455 12.58 4.02 0.00 2.62
1987 6702 1.102978 ACCAAACAAGCGCTGAAAGT 58.897 45.000 12.58 4.77 35.30 2.66
1989 6704 1.480205 CAAACAAGCGCTGAAAGTGG 58.520 50.000 12.58 0.63 46.73 4.00
1990 6705 1.065401 CAAACAAGCGCTGAAAGTGGA 59.935 47.619 12.58 0.00 46.73 4.02
1991 6706 1.388547 AACAAGCGCTGAAAGTGGAA 58.611 45.000 12.58 0.00 46.73 3.53
1992 6707 1.388547 ACAAGCGCTGAAAGTGGAAA 58.611 45.000 12.58 0.00 46.73 3.13
1993 6708 1.065551 ACAAGCGCTGAAAGTGGAAAC 59.934 47.619 12.58 0.00 46.73 2.78
1994 6709 0.668535 AAGCGCTGAAAGTGGAAACC 59.331 50.000 12.58 0.00 46.73 3.27
1995 6710 0.465460 AGCGCTGAAAGTGGAAACCA 60.465 50.000 10.39 0.00 46.73 3.67
1996 6711 0.598065 GCGCTGAAAGTGGAAACCAT 59.402 50.000 0.00 0.00 46.73 3.55
1997 6712 1.666888 GCGCTGAAAGTGGAAACCATG 60.667 52.381 0.00 0.00 46.73 3.66
1998 6713 1.608590 CGCTGAAAGTGGAAACCATGT 59.391 47.619 0.00 0.00 41.82 3.21
1999 6714 2.605338 CGCTGAAAGTGGAAACCATGTG 60.605 50.000 0.00 0.00 41.82 3.21
2000 6715 2.362077 GCTGAAAGTGGAAACCATGTGT 59.638 45.455 0.00 0.00 35.28 3.72
2001 6716 3.181476 GCTGAAAGTGGAAACCATGTGTT 60.181 43.478 0.00 0.00 35.28 3.32
2002 6717 4.362279 CTGAAAGTGGAAACCATGTGTTG 58.638 43.478 0.00 0.00 37.23 3.33
2003 6718 2.888834 AAGTGGAAACCATGTGTTGC 57.111 45.000 0.00 0.00 37.23 4.17
2004 6719 2.071778 AGTGGAAACCATGTGTTGCT 57.928 45.000 0.00 0.00 37.23 3.91
2005 6720 1.956477 AGTGGAAACCATGTGTTGCTC 59.044 47.619 0.00 0.00 37.23 4.26
2006 6721 1.000274 GTGGAAACCATGTGTTGCTCC 60.000 52.381 9.27 9.27 37.23 4.70
2007 6722 1.133513 TGGAAACCATGTGTTGCTCCT 60.134 47.619 14.03 0.00 35.64 3.69
2008 6723 1.541588 GGAAACCATGTGTTGCTCCTC 59.458 52.381 9.06 1.44 37.23 3.71
2009 6724 2.508526 GAAACCATGTGTTGCTCCTCT 58.491 47.619 1.05 0.00 37.23 3.69
2010 6725 1.901591 AACCATGTGTTGCTCCTCTG 58.098 50.000 0.00 0.00 35.31 3.35
2011 6726 0.037303 ACCATGTGTTGCTCCTCTGG 59.963 55.000 0.00 0.00 0.00 3.86
2012 6727 0.037303 CCATGTGTTGCTCCTCTGGT 59.963 55.000 0.00 0.00 0.00 4.00
2013 6728 1.546323 CCATGTGTTGCTCCTCTGGTT 60.546 52.381 0.00 0.00 0.00 3.67
2014 6729 1.808945 CATGTGTTGCTCCTCTGGTTC 59.191 52.381 0.00 0.00 0.00 3.62
2015 6730 0.108585 TGTGTTGCTCCTCTGGTTCC 59.891 55.000 0.00 0.00 0.00 3.62
2016 6731 0.606673 GTGTTGCTCCTCTGGTTCCC 60.607 60.000 0.00 0.00 0.00 3.97
2017 6732 1.002011 GTTGCTCCTCTGGTTCCCC 60.002 63.158 0.00 0.00 0.00 4.81
2018 6733 2.231380 TTGCTCCTCTGGTTCCCCC 61.231 63.158 0.00 0.00 0.00 5.40
2019 6734 2.285743 GCTCCTCTGGTTCCCCCT 60.286 66.667 0.00 0.00 0.00 4.79
2020 6735 2.371259 GCTCCTCTGGTTCCCCCTC 61.371 68.421 0.00 0.00 0.00 4.30
2021 6736 1.690985 CTCCTCTGGTTCCCCCTCC 60.691 68.421 0.00 0.00 0.00 4.30
2022 6737 2.692741 CCTCTGGTTCCCCCTCCC 60.693 72.222 0.00 0.00 0.00 4.30
2023 6738 2.692741 CTCTGGTTCCCCCTCCCC 60.693 72.222 0.00 0.00 0.00 4.81
2024 6739 4.364686 TCTGGTTCCCCCTCCCCC 62.365 72.222 0.00 0.00 0.00 5.40
2039 6754 2.844362 CCCCGGCCAGCTCTCATA 60.844 66.667 2.24 0.00 0.00 2.15
2040 6755 2.423446 CCCGGCCAGCTCTCATAC 59.577 66.667 2.24 0.00 0.00 2.39
2041 6756 2.136878 CCCGGCCAGCTCTCATACT 61.137 63.158 2.24 0.00 0.00 2.12
2042 6757 1.365633 CCGGCCAGCTCTCATACTC 59.634 63.158 2.24 0.00 0.00 2.59
2043 6758 1.007964 CGGCCAGCTCTCATACTCG 60.008 63.158 2.24 0.00 0.00 4.18
2044 6759 1.729470 CGGCCAGCTCTCATACTCGT 61.729 60.000 2.24 0.00 0.00 4.18
2045 6760 1.319541 GGCCAGCTCTCATACTCGTA 58.680 55.000 0.00 0.00 0.00 3.43
2046 6761 1.001158 GGCCAGCTCTCATACTCGTAC 60.001 57.143 0.00 0.00 0.00 3.67
2047 6762 1.334239 GCCAGCTCTCATACTCGTACG 60.334 57.143 9.53 9.53 0.00 3.67
2048 6763 1.941294 CCAGCTCTCATACTCGTACGT 59.059 52.381 16.05 0.00 0.00 3.57
2049 6764 2.286477 CCAGCTCTCATACTCGTACGTG 60.286 54.545 16.05 15.64 0.00 4.49
2050 6765 2.352034 CAGCTCTCATACTCGTACGTGT 59.648 50.000 24.33 24.33 0.00 4.49
2051 6766 3.008330 AGCTCTCATACTCGTACGTGTT 58.992 45.455 25.78 12.41 0.00 3.32
2052 6767 3.063725 AGCTCTCATACTCGTACGTGTTC 59.936 47.826 25.78 8.71 0.00 3.18
2053 6768 3.063725 GCTCTCATACTCGTACGTGTTCT 59.936 47.826 25.78 12.62 0.00 3.01
2054 6769 4.782822 GCTCTCATACTCGTACGTGTTCTC 60.783 50.000 25.78 7.33 0.00 2.87
2055 6770 4.248058 TCTCATACTCGTACGTGTTCTCA 58.752 43.478 25.78 10.30 0.00 3.27
2056 6771 4.092529 TCTCATACTCGTACGTGTTCTCAC 59.907 45.833 25.78 0.00 40.79 3.51
2057 6772 3.999001 TCATACTCGTACGTGTTCTCACT 59.001 43.478 25.78 4.19 41.89 3.41
2058 6773 2.682952 ACTCGTACGTGTTCTCACTG 57.317 50.000 16.65 0.00 41.89 3.66
2059 6774 1.945394 ACTCGTACGTGTTCTCACTGT 59.055 47.619 16.65 0.00 41.89 3.55
2060 6775 2.032204 ACTCGTACGTGTTCTCACTGTC 60.032 50.000 16.65 0.00 41.89 3.51
2061 6776 1.941975 TCGTACGTGTTCTCACTGTCA 59.058 47.619 16.05 0.00 41.89 3.58
2062 6777 2.041966 CGTACGTGTTCTCACTGTCAC 58.958 52.381 7.22 0.00 41.89 3.67
2063 6778 2.540157 CGTACGTGTTCTCACTGTCACA 60.540 50.000 7.22 0.00 41.89 3.58
2064 6779 2.890808 ACGTGTTCTCACTGTCACAT 57.109 45.000 0.00 0.00 41.89 3.21
2065 6780 2.473816 ACGTGTTCTCACTGTCACATG 58.526 47.619 0.00 0.00 41.89 3.21
2066 6781 2.159099 ACGTGTTCTCACTGTCACATGT 60.159 45.455 0.00 0.00 41.89 3.21
2067 6782 2.472861 CGTGTTCTCACTGTCACATGTC 59.527 50.000 0.00 0.00 41.89 3.06
2068 6783 2.802816 GTGTTCTCACTGTCACATGTCC 59.197 50.000 0.00 0.00 40.98 4.02
2069 6784 2.433970 TGTTCTCACTGTCACATGTCCA 59.566 45.455 0.00 0.00 0.00 4.02
2070 6785 2.802816 GTTCTCACTGTCACATGTCCAC 59.197 50.000 0.00 0.00 0.00 4.02
2071 6786 2.038659 TCTCACTGTCACATGTCCACA 58.961 47.619 0.00 0.71 0.00 4.17
2072 6787 2.433970 TCTCACTGTCACATGTCCACAA 59.566 45.455 0.00 0.00 0.00 3.33
2073 6788 2.545526 CTCACTGTCACATGTCCACAAC 59.454 50.000 0.00 0.00 0.00 3.32
2074 6789 2.093235 TCACTGTCACATGTCCACAACA 60.093 45.455 0.00 0.00 43.51 3.33
2082 6797 1.830279 ATGTCCACAACATGAGCCTG 58.170 50.000 0.00 0.00 47.00 4.85
2083 6798 0.764271 TGTCCACAACATGAGCCTGA 59.236 50.000 0.00 0.00 31.20 3.86
2084 6799 1.142667 TGTCCACAACATGAGCCTGAA 59.857 47.619 0.00 0.00 31.20 3.02
2085 6800 1.808945 GTCCACAACATGAGCCTGAAG 59.191 52.381 0.00 0.00 0.00 3.02
2086 6801 0.524862 CCACAACATGAGCCTGAAGC 59.475 55.000 0.00 0.00 44.25 3.86
2087 6802 0.524862 CACAACATGAGCCTGAAGCC 59.475 55.000 0.00 0.00 45.47 4.35
2088 6803 0.610232 ACAACATGAGCCTGAAGCCC 60.610 55.000 0.00 0.00 45.47 5.19
2089 6804 0.323178 CAACATGAGCCTGAAGCCCT 60.323 55.000 0.00 0.00 45.47 5.19
2090 6805 0.323178 AACATGAGCCTGAAGCCCTG 60.323 55.000 0.00 0.00 45.47 4.45
2091 6806 1.203441 ACATGAGCCTGAAGCCCTGA 61.203 55.000 0.00 0.00 45.47 3.86
2092 6807 0.464013 CATGAGCCTGAAGCCCTGAG 60.464 60.000 0.00 0.00 45.47 3.35
2093 6808 1.633915 ATGAGCCTGAAGCCCTGAGG 61.634 60.000 0.00 0.00 45.47 3.86
2094 6809 2.204059 AGCCTGAAGCCCTGAGGT 60.204 61.111 0.00 0.00 45.47 3.85
2095 6810 2.045536 GCCTGAAGCCCTGAGGTG 60.046 66.667 0.00 0.00 34.35 4.00
2096 6811 2.596851 GCCTGAAGCCCTGAGGTGA 61.597 63.158 0.00 0.00 34.35 4.02
2097 6812 1.919600 GCCTGAAGCCCTGAGGTGAT 61.920 60.000 0.00 0.00 34.35 3.06
2098 6813 1.500474 CCTGAAGCCCTGAGGTGATA 58.500 55.000 0.00 0.00 34.57 2.15
2099 6814 1.839994 CCTGAAGCCCTGAGGTGATAA 59.160 52.381 0.00 0.00 34.57 1.75
2100 6815 2.239654 CCTGAAGCCCTGAGGTGATAAA 59.760 50.000 0.00 0.00 34.57 1.40
2101 6816 3.539604 CTGAAGCCCTGAGGTGATAAAG 58.460 50.000 0.00 0.00 34.57 1.85
2102 6817 2.912956 TGAAGCCCTGAGGTGATAAAGT 59.087 45.455 0.00 0.00 34.57 2.66
2103 6818 3.330701 TGAAGCCCTGAGGTGATAAAGTT 59.669 43.478 0.00 0.00 34.57 2.66
2104 6819 4.202567 TGAAGCCCTGAGGTGATAAAGTTT 60.203 41.667 0.00 0.00 34.57 2.66
2105 6820 3.956744 AGCCCTGAGGTGATAAAGTTTC 58.043 45.455 0.00 0.00 34.57 2.78
2106 6821 3.589288 AGCCCTGAGGTGATAAAGTTTCT 59.411 43.478 0.00 0.00 34.57 2.52
2107 6822 3.942115 GCCCTGAGGTGATAAAGTTTCTC 59.058 47.826 0.00 0.00 34.57 2.87
2108 6823 4.518249 CCCTGAGGTGATAAAGTTTCTCC 58.482 47.826 0.00 0.00 0.00 3.71
2109 6824 4.019321 CCCTGAGGTGATAAAGTTTCTCCA 60.019 45.833 0.00 0.00 30.78 3.86
2110 6825 5.181748 CCTGAGGTGATAAAGTTTCTCCAG 58.818 45.833 0.00 0.00 30.78 3.86
2111 6826 5.280215 CCTGAGGTGATAAAGTTTCTCCAGT 60.280 44.000 0.00 0.00 30.78 4.00
2112 6827 6.187727 TGAGGTGATAAAGTTTCTCCAGTT 57.812 37.500 0.00 0.00 30.78 3.16
2113 6828 7.311092 TGAGGTGATAAAGTTTCTCCAGTTA 57.689 36.000 0.00 0.00 30.78 2.24
2114 6829 7.741785 TGAGGTGATAAAGTTTCTCCAGTTAA 58.258 34.615 0.00 0.00 30.78 2.01
2115 6830 7.878127 TGAGGTGATAAAGTTTCTCCAGTTAAG 59.122 37.037 0.00 0.00 30.78 1.85
2116 6831 7.746703 AGGTGATAAAGTTTCTCCAGTTAAGT 58.253 34.615 0.00 0.00 30.78 2.24
2117 6832 7.878644 AGGTGATAAAGTTTCTCCAGTTAAGTC 59.121 37.037 0.00 0.00 30.78 3.01
2118 6833 7.148623 GGTGATAAAGTTTCTCCAGTTAAGTCG 60.149 40.741 0.00 0.00 0.00 4.18
2119 6834 6.872020 TGATAAAGTTTCTCCAGTTAAGTCGG 59.128 38.462 0.00 0.00 0.00 4.79
2120 6835 4.684484 AAGTTTCTCCAGTTAAGTCGGT 57.316 40.909 0.00 0.00 0.00 4.69
2121 6836 3.991367 AGTTTCTCCAGTTAAGTCGGTG 58.009 45.455 0.00 0.00 0.00 4.94
2122 6837 3.640029 AGTTTCTCCAGTTAAGTCGGTGA 59.360 43.478 0.00 0.00 0.00 4.02
2123 6838 4.100498 AGTTTCTCCAGTTAAGTCGGTGAA 59.900 41.667 9.98 9.98 32.12 3.18
2124 6839 3.936372 TCTCCAGTTAAGTCGGTGAAG 57.064 47.619 0.00 0.00 0.00 3.02
2125 6840 3.493334 TCTCCAGTTAAGTCGGTGAAGA 58.507 45.455 0.00 0.00 0.00 2.87
2126 6841 3.893200 TCTCCAGTTAAGTCGGTGAAGAA 59.107 43.478 0.00 0.00 0.00 2.52
2127 6842 4.342951 TCTCCAGTTAAGTCGGTGAAGAAA 59.657 41.667 0.00 0.00 0.00 2.52
2128 6843 4.374399 TCCAGTTAAGTCGGTGAAGAAAC 58.626 43.478 0.00 0.00 0.00 2.78
2129 6844 4.100498 TCCAGTTAAGTCGGTGAAGAAACT 59.900 41.667 0.00 0.00 0.00 2.66
2141 6856 7.749126 GTCGGTGAAGAAACTTACAATATTTGG 59.251 37.037 0.00 0.00 34.12 3.28
2142 6857 6.526674 CGGTGAAGAAACTTACAATATTTGGC 59.473 38.462 0.00 0.00 34.12 4.52
2144 6859 8.736244 GGTGAAGAAACTTACAATATTTGGCTA 58.264 33.333 0.00 0.00 34.12 3.93
2145 6860 9.556030 GTGAAGAAACTTACAATATTTGGCTAC 57.444 33.333 0.00 0.00 34.12 3.58
2146 6861 9.515226 TGAAGAAACTTACAATATTTGGCTACT 57.485 29.630 0.00 0.00 34.12 2.57
2147 6862 9.774742 GAAGAAACTTACAATATTTGGCTACTG 57.225 33.333 0.00 0.00 34.12 2.74
2149 6864 7.393234 AGAAACTTACAATATTTGGCTACTGCA 59.607 33.333 0.00 0.00 41.91 4.41
2150 6865 6.436843 ACTTACAATATTTGGCTACTGCAC 57.563 37.500 0.00 0.00 41.91 4.57
2151 6866 6.180472 ACTTACAATATTTGGCTACTGCACT 58.820 36.000 0.00 0.00 41.91 4.40
2152 6867 4.970662 ACAATATTTGGCTACTGCACTG 57.029 40.909 0.00 0.00 41.91 3.66
2154 6869 5.009631 ACAATATTTGGCTACTGCACTGAA 58.990 37.500 0.00 0.00 41.91 3.02
2155 6870 5.476599 ACAATATTTGGCTACTGCACTGAAA 59.523 36.000 0.00 0.00 41.91 2.69
2156 6871 6.015519 ACAATATTTGGCTACTGCACTGAAAA 60.016 34.615 0.00 0.00 41.91 2.29
2157 6872 6.780457 ATATTTGGCTACTGCACTGAAAAT 57.220 33.333 0.00 0.00 41.91 1.82
2158 6873 3.921119 TTGGCTACTGCACTGAAAATG 57.079 42.857 0.00 0.00 41.91 2.32
2160 6875 2.553602 TGGCTACTGCACTGAAAATGTG 59.446 45.455 0.00 0.00 41.91 3.21
2161 6876 2.813754 GGCTACTGCACTGAAAATGTGA 59.186 45.455 0.00 0.00 41.91 3.58
2162 6877 3.441572 GGCTACTGCACTGAAAATGTGAT 59.558 43.478 0.00 0.00 41.91 3.06
2164 6879 4.855388 GCTACTGCACTGAAAATGTGATTG 59.145 41.667 0.00 0.00 37.60 2.67
2165 6880 3.645884 ACTGCACTGAAAATGTGATTGC 58.354 40.909 0.00 0.00 37.60 3.56
2168 6883 4.052608 TGCACTGAAAATGTGATTGCTTG 58.947 39.130 0.00 0.00 37.60 4.01
2170 6885 4.304110 CACTGAAAATGTGATTGCTTGCT 58.696 39.130 0.00 0.00 37.60 3.91
2171 6886 5.463286 CACTGAAAATGTGATTGCTTGCTA 58.537 37.500 0.00 0.00 37.60 3.49
2176 6891 6.602803 TGAAAATGTGATTGCTTGCTATAGGA 59.397 34.615 1.04 0.00 0.00 2.94
2177 6892 6.382869 AAATGTGATTGCTTGCTATAGGAC 57.617 37.500 1.04 0.00 0.00 3.85
2178 6893 3.808728 TGTGATTGCTTGCTATAGGACC 58.191 45.455 1.04 0.00 0.00 4.46
2179 6894 3.199727 TGTGATTGCTTGCTATAGGACCA 59.800 43.478 1.04 0.00 0.00 4.02
2180 6895 3.812053 GTGATTGCTTGCTATAGGACCAG 59.188 47.826 1.04 0.00 0.00 4.00
2181 6896 2.332063 TTGCTTGCTATAGGACCAGC 57.668 50.000 10.18 10.18 38.31 4.85
2184 6899 0.104855 CTTGCTATAGGACCAGCGCA 59.895 55.000 11.47 0.00 40.79 6.09
2186 6901 0.318441 TGCTATAGGACCAGCGCATC 59.682 55.000 11.47 3.64 40.79 3.91
2187 6902 0.318441 GCTATAGGACCAGCGCATCA 59.682 55.000 11.47 0.00 0.00 3.07
2188 6903 1.671261 GCTATAGGACCAGCGCATCAG 60.671 57.143 11.47 0.00 0.00 2.90
2190 6905 0.390860 ATAGGACCAGCGCATCAGAC 59.609 55.000 11.47 0.00 0.00 3.51
2191 6906 1.676678 TAGGACCAGCGCATCAGACC 61.677 60.000 11.47 4.74 0.00 3.85
2192 6907 2.265739 GACCAGCGCATCAGACCA 59.734 61.111 11.47 0.00 0.00 4.02
2193 6908 1.812922 GACCAGCGCATCAGACCAG 60.813 63.158 11.47 0.00 0.00 4.00
2194 6909 3.200593 CCAGCGCATCAGACCAGC 61.201 66.667 11.47 0.00 0.00 4.85
2195 6910 3.200593 CAGCGCATCAGACCAGCC 61.201 66.667 11.47 0.00 0.00 4.85
2196 6911 4.827087 AGCGCATCAGACCAGCCG 62.827 66.667 11.47 0.00 0.00 5.52
2198 6913 2.107750 CGCATCAGACCAGCCGAT 59.892 61.111 0.00 0.00 0.00 4.18
2199 6914 2.242572 CGCATCAGACCAGCCGATG 61.243 63.158 0.00 0.00 39.62 3.84
2205 7787 0.247460 CAGACCAGCCGATGAAGACA 59.753 55.000 0.00 0.00 0.00 3.41
2208 7790 0.687354 ACCAGCCGATGAAGACAAGT 59.313 50.000 0.00 0.00 0.00 3.16
2209 7791 1.081892 CCAGCCGATGAAGACAAGTG 58.918 55.000 0.00 0.00 0.00 3.16
2210 7792 1.609061 CCAGCCGATGAAGACAAGTGT 60.609 52.381 0.00 0.00 0.00 3.55
2213 7795 2.826128 AGCCGATGAAGACAAGTGTAGA 59.174 45.455 0.00 0.00 0.00 2.59
2215 7797 3.799420 GCCGATGAAGACAAGTGTAGATC 59.201 47.826 0.00 0.00 0.00 2.75
2218 7800 4.201920 CGATGAAGACAAGTGTAGATCGGA 60.202 45.833 0.00 0.00 0.00 4.55
2224 7806 4.712337 AGACAAGTGTAGATCGGAAGGATT 59.288 41.667 0.00 0.00 34.82 3.01
2225 7807 5.012328 ACAAGTGTAGATCGGAAGGATTC 57.988 43.478 0.00 0.00 46.67 2.52
2238 7820 4.152607 GAAGGATTCAACTTGCAGACAC 57.847 45.455 0.00 0.00 46.62 3.67
2241 7823 2.618241 GGATTCAACTTGCAGACACACA 59.382 45.455 0.00 0.00 0.00 3.72
2242 7824 3.304257 GGATTCAACTTGCAGACACACAG 60.304 47.826 0.00 0.00 0.00 3.66
2244 7826 2.279741 TCAACTTGCAGACACACAGAC 58.720 47.619 0.00 0.00 0.00 3.51
2245 7827 1.331756 CAACTTGCAGACACACAGACC 59.668 52.381 0.00 0.00 0.00 3.85
2246 7828 0.833287 ACTTGCAGACACACAGACCT 59.167 50.000 0.00 0.00 0.00 3.85
2247 7829 2.039418 ACTTGCAGACACACAGACCTA 58.961 47.619 0.00 0.00 0.00 3.08
2248 7830 2.036475 ACTTGCAGACACACAGACCTAG 59.964 50.000 0.00 0.00 0.00 3.02
2249 7831 1.995376 TGCAGACACACAGACCTAGA 58.005 50.000 0.00 0.00 0.00 2.43
2250 7832 1.613925 TGCAGACACACAGACCTAGAC 59.386 52.381 0.00 0.00 0.00 2.59
2251 7833 1.401670 GCAGACACACAGACCTAGACG 60.402 57.143 0.00 0.00 0.00 4.18
2252 7834 2.152016 CAGACACACAGACCTAGACGA 58.848 52.381 0.00 0.00 0.00 4.20
2253 7835 2.552743 CAGACACACAGACCTAGACGAA 59.447 50.000 0.00 0.00 0.00 3.85
2254 7836 2.553172 AGACACACAGACCTAGACGAAC 59.447 50.000 0.00 0.00 0.00 3.95
2259 7841 2.483106 CACAGACCTAGACGAACGAAGA 59.517 50.000 0.14 0.00 0.00 2.87
2260 7842 3.127203 CACAGACCTAGACGAACGAAGAT 59.873 47.826 0.14 0.00 0.00 2.40
2261 7843 3.374678 ACAGACCTAGACGAACGAAGATC 59.625 47.826 0.14 0.00 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
272 274 2.280389 CCGCCATGGATGACTCCG 60.280 66.667 18.40 7.36 45.37 4.63
303 305 2.586792 GCTCCGGTGCATCTTCCT 59.413 61.111 23.09 0.00 0.00 3.36
329 331 4.715523 CCGTCACCATTGCCCCGT 62.716 66.667 0.00 0.00 0.00 5.28
373 382 3.026431 GCGGGAGGGACATTTCCGA 62.026 63.158 4.15 0.00 43.94 4.55
424 433 2.039624 ACAGGCTGGGAGGACGAT 59.960 61.111 20.34 0.00 0.00 3.73
439 448 2.100197 CCCACGACCTCTAGATTCACA 58.900 52.381 0.00 0.00 0.00 3.58
456 465 1.745115 CGCGGCAAAAGATCTCCCA 60.745 57.895 0.00 0.00 0.00 4.37
492 506 2.499685 GTATTCGCAGCCGACCCT 59.500 61.111 0.00 0.00 44.30 4.34
501 515 1.533129 CGATCAGACACCGTATTCGCA 60.533 52.381 0.00 0.00 35.54 5.10
508 522 1.595993 CCTGTCCGATCAGACACCGT 61.596 60.000 7.71 0.00 41.78 4.83
523 537 1.075896 TTGGGGCGGAAAAACCTGT 60.076 52.632 0.00 0.00 36.31 4.00
532 546 2.139731 AAAATACGGGTTGGGGCGGA 62.140 55.000 0.00 0.00 0.00 5.54
572 586 1.975407 CAGACCCCACGTACCGTCT 60.975 63.158 5.10 5.10 38.32 4.18
574 588 2.769652 TAGCAGACCCCACGTACCGT 62.770 60.000 0.00 0.00 42.36 4.83
578 592 0.622136 TCTCTAGCAGACCCCACGTA 59.378 55.000 0.00 0.00 0.00 3.57
580 594 0.387202 CATCTCTAGCAGACCCCACG 59.613 60.000 0.00 0.00 32.26 4.94
582 596 0.031716 AGCATCTCTAGCAGACCCCA 60.032 55.000 0.00 0.00 32.26 4.96
629 643 3.300009 CTTTGTCCATTGCGACAGTTTC 58.700 45.455 7.66 0.00 43.39 2.78
650 664 2.890961 GGCGGAAGAAGTAGCGGC 60.891 66.667 0.00 0.00 0.00 6.53
665 679 2.587956 GTCGTTTTGTTTATTCCCGGC 58.412 47.619 0.00 0.00 0.00 6.13
686 700 2.359230 GTGGGCTGCTCACCTCAC 60.359 66.667 21.88 6.27 0.00 3.51
714 729 1.463553 TTGCTCACCTCTCGCTGTCA 61.464 55.000 0.00 0.00 0.00 3.58
739 765 2.813754 CGGGTGCTTTCAGAATTCAGAA 59.186 45.455 9.04 9.04 0.00 3.02
863 890 2.168313 TGGTGAAGCAAGCTGATCGATA 59.832 45.455 0.00 0.00 0.00 2.92
914 953 3.332919 TGAACTCTCTGATGCTTGAAGC 58.667 45.455 10.84 10.84 42.82 3.86
945 984 0.105593 GAGGAGATGATGCCGCTCAA 59.894 55.000 0.00 0.00 0.00 3.02
947 986 1.005156 GGAGGAGATGATGCCGCTC 60.005 63.158 0.00 0.00 0.00 5.03
957 996 4.514577 CGCCGCGTTGGAGGAGAT 62.515 66.667 4.92 0.00 42.00 2.75
1209 3684 0.973496 GCCCCTCTTCGGTCTTCTCT 60.973 60.000 0.00 0.00 0.00 3.10
1216 3691 2.685380 CCTCAGCCCCTCTTCGGT 60.685 66.667 0.00 0.00 0.00 4.69
1221 3696 3.999285 ACGGTCCTCAGCCCCTCT 61.999 66.667 0.00 0.00 0.00 3.69
1283 3765 4.249661 GAGCTAGGAGAAAACACCTCTTG 58.750 47.826 0.00 0.00 37.68 3.02
1309 3791 7.658179 TGTTGCTAGAAGTTTCTAACAGATG 57.342 36.000 0.00 0.00 37.23 2.90
1310 3792 7.173390 GGTTGTTGCTAGAAGTTTCTAACAGAT 59.827 37.037 0.00 0.00 37.23 2.90
1323 3812 1.225376 CGGCGTGGTTGTTGCTAGAA 61.225 55.000 0.00 0.00 0.00 2.10
1340 3829 0.250124 TAACCAGCCAAGTCACACGG 60.250 55.000 0.00 0.00 0.00 4.94
1342 3831 3.057526 GGAATTAACCAGCCAAGTCACAC 60.058 47.826 0.00 0.00 0.00 3.82
1345 3834 2.378547 AGGGAATTAACCAGCCAAGTCA 59.621 45.455 1.88 0.00 0.00 3.41
1346 3835 2.755103 CAGGGAATTAACCAGCCAAGTC 59.245 50.000 1.88 0.00 0.00 3.01
1563 6132 0.171903 CAAGCTGGCGGAAAATGGAG 59.828 55.000 0.00 0.00 0.00 3.86
1584 6156 7.994194 AGAAGAAGGTTTTGATTATCATCTGC 58.006 34.615 0.00 0.00 0.00 4.26
1648 6220 9.126151 AGACGGAGGTAGTATCATATTCATATG 57.874 37.037 0.00 0.00 41.10 1.78
1667 6239 6.238416 GAATGACTTATTCACCGAGACGGAG 61.238 48.000 16.99 9.14 45.73 4.63
1668 6240 4.439700 GAATGACTTATTCACCGAGACGGA 60.440 45.833 16.99 0.00 45.73 4.69
1669 6241 3.797256 GAATGACTTATTCACCGAGACGG 59.203 47.826 8.67 8.67 43.79 4.79
1670 6242 3.482472 CGAATGACTTATTCACCGAGACG 59.518 47.826 0.00 0.00 44.42 4.18
1672 6244 3.444916 GCGAATGACTTATTCACCGAGA 58.555 45.455 0.00 0.00 44.42 4.04
1674 6246 2.190161 CGCGAATGACTTATTCACCGA 58.810 47.619 0.00 0.00 44.42 4.69
1675 6247 1.924524 ACGCGAATGACTTATTCACCG 59.075 47.619 15.93 0.00 44.42 4.94
1676 6248 4.110482 ACTACGCGAATGACTTATTCACC 58.890 43.478 15.93 0.00 44.42 4.02
1677 6249 5.515626 AGAACTACGCGAATGACTTATTCAC 59.484 40.000 15.93 0.00 44.42 3.18
1678 6250 5.647589 AGAACTACGCGAATGACTTATTCA 58.352 37.500 15.93 0.00 44.42 2.57
1679 6251 6.360148 CCTAGAACTACGCGAATGACTTATTC 59.640 42.308 15.93 3.24 41.46 1.75
1680 6252 6.183360 ACCTAGAACTACGCGAATGACTTATT 60.183 38.462 15.93 0.00 0.00 1.40
1681 6253 5.298777 ACCTAGAACTACGCGAATGACTTAT 59.701 40.000 15.93 0.00 0.00 1.73
1682 6254 4.637534 ACCTAGAACTACGCGAATGACTTA 59.362 41.667 15.93 0.00 0.00 2.24
1684 6256 3.015327 ACCTAGAACTACGCGAATGACT 58.985 45.455 15.93 9.07 0.00 3.41
1685 6257 3.361414 GACCTAGAACTACGCGAATGAC 58.639 50.000 15.93 0.66 0.00 3.06
1686 6258 2.031314 CGACCTAGAACTACGCGAATGA 59.969 50.000 15.93 0.00 0.00 2.57
1689 6261 1.725641 TCGACCTAGAACTACGCGAA 58.274 50.000 15.93 0.00 0.00 4.70
1690 6262 1.596260 CATCGACCTAGAACTACGCGA 59.404 52.381 15.93 0.00 0.00 5.87
1691 6263 1.596260 TCATCGACCTAGAACTACGCG 59.404 52.381 3.53 3.53 0.00 6.01
1692 6264 3.900388 ATCATCGACCTAGAACTACGC 57.100 47.619 0.00 0.00 0.00 4.42
1693 6265 7.416022 AGTTAAATCATCGACCTAGAACTACG 58.584 38.462 0.00 0.00 0.00 3.51
1696 6268 9.357161 AGATAGTTAAATCATCGACCTAGAACT 57.643 33.333 0.00 0.00 0.00 3.01
1757 6329 9.751542 CTAGATTTCTACACGGATGTAATTTCT 57.248 33.333 0.00 0.00 40.84 2.52
1758 6330 9.530633 ACTAGATTTCTACACGGATGTAATTTC 57.469 33.333 0.00 0.00 40.84 2.17
1759 6331 9.314321 CACTAGATTTCTACACGGATGTAATTT 57.686 33.333 0.00 0.00 40.84 1.82
1760 6332 8.692710 TCACTAGATTTCTACACGGATGTAATT 58.307 33.333 0.00 0.00 40.84 1.40
1762 6334 7.634671 TCACTAGATTTCTACACGGATGTAA 57.365 36.000 0.00 0.00 40.84 2.41
1763 6335 7.818997 ATCACTAGATTTCTACACGGATGTA 57.181 36.000 0.00 0.00 40.48 2.29
1765 6337 9.776158 GTATATCACTAGATTTCTACACGGATG 57.224 37.037 0.00 0.00 35.67 3.51
1767 6339 9.570468 AAGTATATCACTAGATTTCTACACGGA 57.430 33.333 0.00 0.00 36.04 4.69
1815 6409 8.806429 TCTAGGTCATTGATTTGAGCAATTAA 57.194 30.769 6.44 0.00 44.58 1.40
1816 6410 8.677300 GTTCTAGGTCATTGATTTGAGCAATTA 58.323 33.333 6.44 0.00 44.58 1.40
1818 6412 6.888632 AGTTCTAGGTCATTGATTTGAGCAAT 59.111 34.615 6.44 0.00 44.58 3.56
1819 6413 6.240894 AGTTCTAGGTCATTGATTTGAGCAA 58.759 36.000 6.44 0.00 44.58 3.91
1820 6414 5.809001 AGTTCTAGGTCATTGATTTGAGCA 58.191 37.500 6.44 0.00 44.58 4.26
1821 6415 6.019479 CGTAGTTCTAGGTCATTGATTTGAGC 60.019 42.308 0.00 0.00 42.94 4.26
1822 6416 7.036220 ACGTAGTTCTAGGTCATTGATTTGAG 58.964 38.462 0.00 0.00 37.78 3.02
1823 6417 6.931838 ACGTAGTTCTAGGTCATTGATTTGA 58.068 36.000 0.00 0.00 37.78 2.69
1828 6422 9.793252 GTTATTTACGTAGTTCTAGGTCATTGA 57.207 33.333 8.18 0.00 37.78 2.57
1829 6423 9.798994 AGTTATTTACGTAGTTCTAGGTCATTG 57.201 33.333 8.18 0.00 37.78 2.82
1844 6438 9.674824 CCGTCTAGATGAATAAGTTATTTACGT 57.325 33.333 13.79 0.00 0.00 3.57
1845 6439 9.888878 TCCGTCTAGATGAATAAGTTATTTACG 57.111 33.333 13.79 10.09 0.00 3.18
1848 6442 8.925338 ACCTCCGTCTAGATGAATAAGTTATTT 58.075 33.333 13.79 0.00 0.00 1.40
1852 6446 7.061688 ACTACCTCCGTCTAGATGAATAAGTT 58.938 38.462 13.79 0.00 0.00 2.66
1853 6447 6.603224 ACTACCTCCGTCTAGATGAATAAGT 58.397 40.000 13.79 7.20 0.00 2.24
1856 6450 7.313740 ACTACTACCTCCGTCTAGATGAATA 57.686 40.000 13.79 0.00 0.00 1.75
1857 6451 6.190346 ACTACTACCTCCGTCTAGATGAAT 57.810 41.667 13.79 0.00 0.00 2.57
1858 6452 5.627182 ACTACTACCTCCGTCTAGATGAA 57.373 43.478 13.79 0.00 0.00 2.57
1859 6453 5.600069 TGTACTACTACCTCCGTCTAGATGA 59.400 44.000 13.79 4.26 0.00 2.92
1860 6454 5.851720 TGTACTACTACCTCCGTCTAGATG 58.148 45.833 4.85 4.85 0.00 2.90
1861 6455 5.602145 ACTGTACTACTACCTCCGTCTAGAT 59.398 44.000 0.00 0.00 0.00 1.98
1862 6456 4.959210 ACTGTACTACTACCTCCGTCTAGA 59.041 45.833 0.00 0.00 0.00 2.43
1863 6457 5.275067 ACTGTACTACTACCTCCGTCTAG 57.725 47.826 0.00 0.00 0.00 2.43
1864 6458 6.739843 GCATACTGTACTACTACCTCCGTCTA 60.740 46.154 0.00 0.00 0.00 2.59
1865 6459 5.609423 CATACTGTACTACTACCTCCGTCT 58.391 45.833 0.00 0.00 0.00 4.18
1866 6460 4.213059 GCATACTGTACTACTACCTCCGTC 59.787 50.000 0.00 0.00 0.00 4.79
1867 6461 4.133078 GCATACTGTACTACTACCTCCGT 58.867 47.826 0.00 0.00 0.00 4.69
1868 6462 4.132336 TGCATACTGTACTACTACCTCCG 58.868 47.826 0.00 0.00 0.00 4.63
1869 6463 6.005198 AGATGCATACTGTACTACTACCTCC 58.995 44.000 0.00 0.00 0.00 4.30
1870 6464 7.513371 AAGATGCATACTGTACTACTACCTC 57.487 40.000 0.00 0.00 0.00 3.85
1871 6465 7.014422 GGAAAGATGCATACTGTACTACTACCT 59.986 40.741 0.00 0.00 0.00 3.08
1872 6466 7.146648 GGAAAGATGCATACTGTACTACTACC 58.853 42.308 0.00 0.00 0.00 3.18
1873 6467 7.648510 GTGGAAAGATGCATACTGTACTACTAC 59.351 40.741 0.00 0.00 0.00 2.73
1874 6468 7.560262 AGTGGAAAGATGCATACTGTACTACTA 59.440 37.037 0.00 0.00 0.00 1.82
1875 6469 6.381420 AGTGGAAAGATGCATACTGTACTACT 59.619 38.462 0.00 0.52 0.00 2.57
1876 6470 6.574350 AGTGGAAAGATGCATACTGTACTAC 58.426 40.000 0.00 0.00 0.00 2.73
1878 6472 5.683876 AGTGGAAAGATGCATACTGTACT 57.316 39.130 0.00 0.00 0.00 2.73
1879 6473 8.338259 CAAATAGTGGAAAGATGCATACTGTAC 58.662 37.037 0.00 0.00 0.00 2.90
1881 6475 6.886459 ACAAATAGTGGAAAGATGCATACTGT 59.114 34.615 0.00 0.00 0.00 3.55
1882 6476 7.191551 CACAAATAGTGGAAAGATGCATACTG 58.808 38.462 0.00 0.00 44.69 2.74
1923 6638 4.035091 TGATGGACGAACACAACAAAGAAG 59.965 41.667 0.00 0.00 0.00 2.85
1957 6672 3.185797 CGCTTGTTTGGTAGTAACAGTCC 59.814 47.826 0.00 0.00 36.89 3.85
1966 6681 2.290641 ACTTTCAGCGCTTGTTTGGTAG 59.709 45.455 7.50 0.84 0.00 3.18
1967 6682 2.032799 CACTTTCAGCGCTTGTTTGGTA 59.967 45.455 7.50 0.00 0.00 3.25
1968 6683 1.102978 ACTTTCAGCGCTTGTTTGGT 58.897 45.000 7.50 0.00 0.00 3.67
1969 6684 1.480205 CACTTTCAGCGCTTGTTTGG 58.520 50.000 7.50 0.00 0.00 3.28
1970 6685 1.065401 TCCACTTTCAGCGCTTGTTTG 59.935 47.619 7.50 0.96 0.00 2.93
1971 6686 1.388547 TCCACTTTCAGCGCTTGTTT 58.611 45.000 7.50 0.00 0.00 2.83
1972 6687 1.388547 TTCCACTTTCAGCGCTTGTT 58.611 45.000 7.50 0.00 0.00 2.83
1973 6688 1.065551 GTTTCCACTTTCAGCGCTTGT 59.934 47.619 7.50 1.09 0.00 3.16
1974 6689 1.600413 GGTTTCCACTTTCAGCGCTTG 60.600 52.381 7.50 2.30 0.00 4.01
1975 6690 0.668535 GGTTTCCACTTTCAGCGCTT 59.331 50.000 7.50 0.00 0.00 4.68
1976 6691 0.465460 TGGTTTCCACTTTCAGCGCT 60.465 50.000 2.64 2.64 0.00 5.92
1977 6692 0.598065 ATGGTTTCCACTTTCAGCGC 59.402 50.000 0.00 0.00 35.80 5.92
1978 6693 1.608590 ACATGGTTTCCACTTTCAGCG 59.391 47.619 0.00 0.00 35.80 5.18
1979 6694 2.362077 ACACATGGTTTCCACTTTCAGC 59.638 45.455 0.00 0.00 35.80 4.26
1980 6695 4.362279 CAACACATGGTTTCCACTTTCAG 58.638 43.478 0.00 0.00 37.72 3.02
1981 6696 3.430098 GCAACACATGGTTTCCACTTTCA 60.430 43.478 0.00 0.00 37.72 2.69
1982 6697 3.123050 GCAACACATGGTTTCCACTTTC 58.877 45.455 0.00 0.00 37.72 2.62
1983 6698 2.765699 AGCAACACATGGTTTCCACTTT 59.234 40.909 0.00 0.00 37.72 2.66
1984 6699 2.362077 GAGCAACACATGGTTTCCACTT 59.638 45.455 0.00 0.00 40.59 3.16
1985 6700 1.956477 GAGCAACACATGGTTTCCACT 59.044 47.619 0.00 0.00 40.59 4.00
1986 6701 1.000274 GGAGCAACACATGGTTTCCAC 60.000 52.381 0.00 0.00 40.59 4.02
1987 6702 1.133513 AGGAGCAACACATGGTTTCCA 60.134 47.619 14.83 0.00 38.39 3.53
1988 6703 1.541588 GAGGAGCAACACATGGTTTCC 59.458 52.381 0.00 4.01 40.59 3.13
1989 6704 2.227388 CAGAGGAGCAACACATGGTTTC 59.773 50.000 0.00 0.00 40.59 2.78
1990 6705 2.233271 CAGAGGAGCAACACATGGTTT 58.767 47.619 0.00 0.00 40.59 3.27
1991 6706 1.546323 CCAGAGGAGCAACACATGGTT 60.546 52.381 0.00 0.00 40.59 3.67
1992 6707 0.037303 CCAGAGGAGCAACACATGGT 59.963 55.000 0.00 0.00 43.97 3.55
1993 6708 0.037303 ACCAGAGGAGCAACACATGG 59.963 55.000 0.00 0.00 0.00 3.66
1994 6709 1.808945 GAACCAGAGGAGCAACACATG 59.191 52.381 0.00 0.00 0.00 3.21
1995 6710 1.271597 GGAACCAGAGGAGCAACACAT 60.272 52.381 0.00 0.00 0.00 3.21
1996 6711 0.108585 GGAACCAGAGGAGCAACACA 59.891 55.000 0.00 0.00 0.00 3.72
1997 6712 2.934083 GGAACCAGAGGAGCAACAC 58.066 57.895 0.00 0.00 0.00 3.32
2022 6737 2.844362 TATGAGAGCTGGCCGGGG 60.844 66.667 15.02 0.00 0.00 5.73
2023 6738 2.093537 GAGTATGAGAGCTGGCCGGG 62.094 65.000 15.02 1.86 0.00 5.73
2024 6739 1.365633 GAGTATGAGAGCTGGCCGG 59.634 63.158 7.41 7.41 0.00 6.13
2025 6740 1.007964 CGAGTATGAGAGCTGGCCG 60.008 63.158 0.00 0.00 0.00 6.13
2026 6741 1.001158 GTACGAGTATGAGAGCTGGCC 60.001 57.143 0.00 0.00 0.00 5.36
2027 6742 1.334239 CGTACGAGTATGAGAGCTGGC 60.334 57.143 10.44 0.00 0.00 4.85
2028 6743 1.941294 ACGTACGAGTATGAGAGCTGG 59.059 52.381 24.41 0.00 0.00 4.85
2029 6744 2.352034 ACACGTACGAGTATGAGAGCTG 59.648 50.000 24.41 7.41 0.00 4.24
2030 6745 2.630158 ACACGTACGAGTATGAGAGCT 58.370 47.619 24.41 0.00 0.00 4.09
2031 6746 3.063725 AGAACACGTACGAGTATGAGAGC 59.936 47.826 24.41 4.83 0.00 4.09
2032 6747 4.329256 TGAGAACACGTACGAGTATGAGAG 59.671 45.833 24.41 2.52 0.00 3.20
2033 6748 4.092529 GTGAGAACACGTACGAGTATGAGA 59.907 45.833 24.41 1.50 37.28 3.27
2034 6749 4.332788 GTGAGAACACGTACGAGTATGAG 58.667 47.826 24.41 4.92 37.28 2.90
2035 6750 4.332186 GTGAGAACACGTACGAGTATGA 57.668 45.455 24.41 4.14 37.28 2.15
2047 6762 2.802816 GGACATGTGACAGTGAGAACAC 59.197 50.000 1.15 2.60 46.24 3.32
2048 6763 2.433970 TGGACATGTGACAGTGAGAACA 59.566 45.455 1.15 0.00 0.00 3.18
2049 6764 2.802816 GTGGACATGTGACAGTGAGAAC 59.197 50.000 1.15 0.00 0.00 3.01
2050 6765 2.433970 TGTGGACATGTGACAGTGAGAA 59.566 45.455 1.15 0.00 0.00 2.87
2051 6766 2.038659 TGTGGACATGTGACAGTGAGA 58.961 47.619 1.15 0.00 0.00 3.27
2052 6767 2.531522 TGTGGACATGTGACAGTGAG 57.468 50.000 1.15 0.00 0.00 3.51
2053 6768 2.093235 TGTTGTGGACATGTGACAGTGA 60.093 45.455 1.15 0.00 32.00 3.41
2054 6769 2.287769 TGTTGTGGACATGTGACAGTG 58.712 47.619 1.15 0.00 32.00 3.66
2055 6770 2.708216 TGTTGTGGACATGTGACAGT 57.292 45.000 1.15 0.00 32.00 3.55
2064 6779 0.764271 TCAGGCTCATGTTGTGGACA 59.236 50.000 0.00 0.00 43.71 4.02
2065 6780 1.808945 CTTCAGGCTCATGTTGTGGAC 59.191 52.381 0.00 0.00 0.00 4.02
2066 6781 1.883638 GCTTCAGGCTCATGTTGTGGA 60.884 52.381 0.00 0.00 38.06 4.02
2067 6782 0.524862 GCTTCAGGCTCATGTTGTGG 59.475 55.000 0.00 0.00 38.06 4.17
2068 6783 0.524862 GGCTTCAGGCTCATGTTGTG 59.475 55.000 0.00 0.00 41.46 3.33
2069 6784 0.610232 GGGCTTCAGGCTCATGTTGT 60.610 55.000 0.00 0.00 42.01 3.32
2070 6785 0.323178 AGGGCTTCAGGCTCATGTTG 60.323 55.000 0.00 0.00 45.61 3.33
2071 6786 0.323178 CAGGGCTTCAGGCTCATGTT 60.323 55.000 0.00 0.00 45.61 2.71
2072 6787 1.203441 TCAGGGCTTCAGGCTCATGT 61.203 55.000 0.00 0.00 45.61 3.21
2073 6788 0.464013 CTCAGGGCTTCAGGCTCATG 60.464 60.000 0.00 0.00 45.61 3.07
2074 6789 1.633915 CCTCAGGGCTTCAGGCTCAT 61.634 60.000 0.00 0.00 45.61 2.90
2075 6790 2.296365 CCTCAGGGCTTCAGGCTCA 61.296 63.158 0.00 0.00 45.61 4.26
2076 6791 2.297129 ACCTCAGGGCTTCAGGCTC 61.297 63.158 0.00 0.00 42.95 4.70
2077 6792 2.204059 ACCTCAGGGCTTCAGGCT 60.204 61.111 0.00 0.00 41.46 4.58
2078 6793 1.919600 ATCACCTCAGGGCTTCAGGC 61.920 60.000 0.00 0.00 40.90 4.85
2079 6794 1.500474 TATCACCTCAGGGCTTCAGG 58.500 55.000 0.00 0.00 35.63 3.86
2080 6795 3.054802 ACTTTATCACCTCAGGGCTTCAG 60.055 47.826 0.00 0.00 35.63 3.02
2081 6796 2.912956 ACTTTATCACCTCAGGGCTTCA 59.087 45.455 0.00 0.00 35.63 3.02
2082 6797 3.636153 ACTTTATCACCTCAGGGCTTC 57.364 47.619 0.00 0.00 35.63 3.86
2083 6798 4.043435 AGAAACTTTATCACCTCAGGGCTT 59.957 41.667 0.00 0.00 35.63 4.35
2084 6799 3.589288 AGAAACTTTATCACCTCAGGGCT 59.411 43.478 0.00 0.00 35.63 5.19
2085 6800 3.942115 GAGAAACTTTATCACCTCAGGGC 59.058 47.826 0.00 0.00 35.63 5.19
2086 6801 4.019321 TGGAGAAACTTTATCACCTCAGGG 60.019 45.833 0.00 0.00 38.88 4.45
2087 6802 5.165961 TGGAGAAACTTTATCACCTCAGG 57.834 43.478 0.00 0.00 0.00 3.86
2088 6803 5.799213 ACTGGAGAAACTTTATCACCTCAG 58.201 41.667 0.00 0.12 0.00 3.35
2089 6804 5.825593 ACTGGAGAAACTTTATCACCTCA 57.174 39.130 0.00 0.00 0.00 3.86
2090 6805 7.878644 ACTTAACTGGAGAAACTTTATCACCTC 59.121 37.037 0.00 0.00 0.00 3.85
2091 6806 7.746703 ACTTAACTGGAGAAACTTTATCACCT 58.253 34.615 0.00 0.00 0.00 4.00
2092 6807 7.148623 CGACTTAACTGGAGAAACTTTATCACC 60.149 40.741 0.00 0.00 0.00 4.02
2093 6808 7.148623 CCGACTTAACTGGAGAAACTTTATCAC 60.149 40.741 0.00 0.00 0.00 3.06
2094 6809 6.872020 CCGACTTAACTGGAGAAACTTTATCA 59.128 38.462 0.00 0.00 0.00 2.15
2095 6810 6.872547 ACCGACTTAACTGGAGAAACTTTATC 59.127 38.462 0.00 0.00 0.00 1.75
2096 6811 6.649557 CACCGACTTAACTGGAGAAACTTTAT 59.350 38.462 0.00 0.00 0.00 1.40
2097 6812 5.987347 CACCGACTTAACTGGAGAAACTTTA 59.013 40.000 0.00 0.00 0.00 1.85
2098 6813 4.814771 CACCGACTTAACTGGAGAAACTTT 59.185 41.667 0.00 0.00 0.00 2.66
2099 6814 4.100498 TCACCGACTTAACTGGAGAAACTT 59.900 41.667 0.00 0.00 0.00 2.66
2100 6815 3.640029 TCACCGACTTAACTGGAGAAACT 59.360 43.478 0.00 0.00 0.00 2.66
2101 6816 3.986277 TCACCGACTTAACTGGAGAAAC 58.014 45.455 0.00 0.00 0.00 2.78
2102 6817 4.342951 TCTTCACCGACTTAACTGGAGAAA 59.657 41.667 0.00 0.00 33.06 2.52
2103 6818 3.893200 TCTTCACCGACTTAACTGGAGAA 59.107 43.478 0.00 0.00 32.59 2.87
2104 6819 3.493334 TCTTCACCGACTTAACTGGAGA 58.507 45.455 0.00 0.00 0.00 3.71
2105 6820 3.936372 TCTTCACCGACTTAACTGGAG 57.064 47.619 0.00 0.00 0.00 3.86
2106 6821 4.100498 AGTTTCTTCACCGACTTAACTGGA 59.900 41.667 0.00 0.00 0.00 3.86
2107 6822 4.377897 AGTTTCTTCACCGACTTAACTGG 58.622 43.478 0.00 0.00 0.00 4.00
2108 6823 5.986004 AAGTTTCTTCACCGACTTAACTG 57.014 39.130 0.00 0.00 31.05 3.16
2109 6824 6.576185 TGTAAGTTTCTTCACCGACTTAACT 58.424 36.000 0.00 0.00 36.63 2.24
2110 6825 6.833342 TGTAAGTTTCTTCACCGACTTAAC 57.167 37.500 0.00 0.00 36.63 2.01
2111 6826 9.715121 ATATTGTAAGTTTCTTCACCGACTTAA 57.285 29.630 0.00 0.00 36.63 1.85
2112 6827 9.715121 AATATTGTAAGTTTCTTCACCGACTTA 57.285 29.630 0.00 0.00 34.46 2.24
2113 6828 8.617290 AATATTGTAAGTTTCTTCACCGACTT 57.383 30.769 0.00 0.00 36.42 3.01
2114 6829 8.504005 CAAATATTGTAAGTTTCTTCACCGACT 58.496 33.333 0.00 0.00 0.00 4.18
2115 6830 7.749126 CCAAATATTGTAAGTTTCTTCACCGAC 59.251 37.037 0.00 0.00 0.00 4.79
2116 6831 7.574217 GCCAAATATTGTAAGTTTCTTCACCGA 60.574 37.037 0.00 0.00 0.00 4.69
2117 6832 6.526674 GCCAAATATTGTAAGTTTCTTCACCG 59.473 38.462 0.00 0.00 0.00 4.94
2118 6833 7.602753 AGCCAAATATTGTAAGTTTCTTCACC 58.397 34.615 0.00 0.00 0.00 4.02
2119 6834 9.556030 GTAGCCAAATATTGTAAGTTTCTTCAC 57.444 33.333 0.00 0.00 0.00 3.18
2120 6835 9.515226 AGTAGCCAAATATTGTAAGTTTCTTCA 57.485 29.630 0.00 0.00 0.00 3.02
2121 6836 9.774742 CAGTAGCCAAATATTGTAAGTTTCTTC 57.225 33.333 0.00 0.00 0.00 2.87
2122 6837 8.244113 GCAGTAGCCAAATATTGTAAGTTTCTT 58.756 33.333 0.00 0.00 33.58 2.52
2123 6838 7.393234 TGCAGTAGCCAAATATTGTAAGTTTCT 59.607 33.333 0.00 0.00 41.13 2.52
2124 6839 7.484959 GTGCAGTAGCCAAATATTGTAAGTTTC 59.515 37.037 0.00 0.00 41.13 2.78
2125 6840 7.176690 AGTGCAGTAGCCAAATATTGTAAGTTT 59.823 33.333 0.00 0.00 41.13 2.66
2126 6841 6.659242 AGTGCAGTAGCCAAATATTGTAAGTT 59.341 34.615 0.00 0.00 41.13 2.66
2127 6842 6.094048 CAGTGCAGTAGCCAAATATTGTAAGT 59.906 38.462 0.00 0.00 41.13 2.24
2128 6843 6.316140 TCAGTGCAGTAGCCAAATATTGTAAG 59.684 38.462 0.00 0.00 41.13 2.34
2129 6844 6.176896 TCAGTGCAGTAGCCAAATATTGTAA 58.823 36.000 0.00 0.00 41.13 2.41
2141 6856 4.691860 ATCACATTTTCAGTGCAGTAGC 57.308 40.909 0.00 0.00 42.57 3.58
2142 6857 4.855388 GCAATCACATTTTCAGTGCAGTAG 59.145 41.667 0.00 0.00 36.93 2.57
2144 6859 3.319972 AGCAATCACATTTTCAGTGCAGT 59.680 39.130 0.00 0.00 36.93 4.40
2145 6860 3.909430 AGCAATCACATTTTCAGTGCAG 58.091 40.909 0.00 0.00 36.93 4.41
2146 6861 4.052608 CAAGCAATCACATTTTCAGTGCA 58.947 39.130 0.00 0.00 36.93 4.57
2147 6862 3.120786 GCAAGCAATCACATTTTCAGTGC 60.121 43.478 0.00 0.00 36.93 4.40
2149 6864 4.595762 AGCAAGCAATCACATTTTCAGT 57.404 36.364 0.00 0.00 0.00 3.41
2150 6865 6.916387 CCTATAGCAAGCAATCACATTTTCAG 59.084 38.462 0.00 0.00 0.00 3.02
2151 6866 6.602803 TCCTATAGCAAGCAATCACATTTTCA 59.397 34.615 0.00 0.00 0.00 2.69
2152 6867 6.914757 GTCCTATAGCAAGCAATCACATTTTC 59.085 38.462 0.00 0.00 0.00 2.29
2154 6869 5.300286 GGTCCTATAGCAAGCAATCACATTT 59.700 40.000 0.00 0.00 0.00 2.32
2155 6870 4.823989 GGTCCTATAGCAAGCAATCACATT 59.176 41.667 0.00 0.00 0.00 2.71
2156 6871 4.141413 TGGTCCTATAGCAAGCAATCACAT 60.141 41.667 0.00 0.00 31.13 3.21
2157 6872 3.199727 TGGTCCTATAGCAAGCAATCACA 59.800 43.478 0.00 0.00 31.13 3.58
2158 6873 3.808728 TGGTCCTATAGCAAGCAATCAC 58.191 45.455 0.00 0.00 31.13 3.06
2160 6875 2.810852 GCTGGTCCTATAGCAAGCAATC 59.189 50.000 2.72 0.00 39.67 2.67
2161 6876 2.808202 CGCTGGTCCTATAGCAAGCAAT 60.808 50.000 7.32 0.00 39.87 3.56
2162 6877 1.473257 CGCTGGTCCTATAGCAAGCAA 60.473 52.381 7.32 0.00 39.87 3.91
2164 6879 1.224722 GCGCTGGTCCTATAGCAAGC 61.225 60.000 0.00 0.00 39.87 4.01
2165 6880 0.104855 TGCGCTGGTCCTATAGCAAG 59.895 55.000 9.73 0.00 39.87 4.01
2168 6883 0.318441 TGATGCGCTGGTCCTATAGC 59.682 55.000 9.73 0.00 36.60 2.97
2170 6885 1.613925 GTCTGATGCGCTGGTCCTATA 59.386 52.381 9.73 0.00 0.00 1.31
2171 6886 0.390860 GTCTGATGCGCTGGTCCTAT 59.609 55.000 9.73 0.00 0.00 2.57
2176 6891 2.267006 CTGGTCTGATGCGCTGGT 59.733 61.111 9.73 0.00 0.00 4.00
2177 6892 3.200593 GCTGGTCTGATGCGCTGG 61.201 66.667 9.73 0.00 0.00 4.85
2178 6893 3.200593 GGCTGGTCTGATGCGCTG 61.201 66.667 9.73 0.00 0.00 5.18
2179 6894 4.827087 CGGCTGGTCTGATGCGCT 62.827 66.667 9.73 0.00 0.00 5.92
2180 6895 4.819761 TCGGCTGGTCTGATGCGC 62.820 66.667 0.00 0.00 0.00 6.09
2181 6896 2.107750 ATCGGCTGGTCTGATGCG 59.892 61.111 0.00 0.00 39.29 4.73
2184 6899 1.137872 GTCTTCATCGGCTGGTCTGAT 59.862 52.381 0.00 0.00 41.40 2.90
2186 6901 0.247460 TGTCTTCATCGGCTGGTCTG 59.753 55.000 0.00 0.00 0.00 3.51
2187 6902 0.976641 TTGTCTTCATCGGCTGGTCT 59.023 50.000 0.00 0.00 0.00 3.85
2188 6903 1.338200 ACTTGTCTTCATCGGCTGGTC 60.338 52.381 0.00 0.00 0.00 4.02
2190 6905 1.081892 CACTTGTCTTCATCGGCTGG 58.918 55.000 0.00 0.00 0.00 4.85
2191 6906 1.800805 ACACTTGTCTTCATCGGCTG 58.199 50.000 0.00 0.00 0.00 4.85
2192 6907 2.826128 TCTACACTTGTCTTCATCGGCT 59.174 45.455 0.00 0.00 0.00 5.52
2193 6908 3.232213 TCTACACTTGTCTTCATCGGC 57.768 47.619 0.00 0.00 0.00 5.54
2194 6909 4.038361 CGATCTACACTTGTCTTCATCGG 58.962 47.826 0.00 0.00 0.00 4.18
2195 6910 4.038361 CCGATCTACACTTGTCTTCATCG 58.962 47.826 0.00 0.00 0.00 3.84
2196 6911 5.250235 TCCGATCTACACTTGTCTTCATC 57.750 43.478 0.00 0.00 0.00 2.92
2198 6913 4.082190 CCTTCCGATCTACACTTGTCTTCA 60.082 45.833 0.00 0.00 0.00 3.02
2199 6914 4.158025 TCCTTCCGATCTACACTTGTCTTC 59.842 45.833 0.00 0.00 0.00 2.87
2205 7787 5.187967 AGTTGAATCCTTCCGATCTACACTT 59.812 40.000 0.00 0.00 0.00 3.16
2208 7790 5.419542 CAAGTTGAATCCTTCCGATCTACA 58.580 41.667 0.00 0.00 0.00 2.74
2209 7791 4.271291 GCAAGTTGAATCCTTCCGATCTAC 59.729 45.833 7.16 0.00 0.00 2.59
2210 7792 4.081142 TGCAAGTTGAATCCTTCCGATCTA 60.081 41.667 7.16 0.00 0.00 1.98
2213 7795 3.012518 CTGCAAGTTGAATCCTTCCGAT 58.987 45.455 7.16 0.00 0.00 4.18
2215 7797 2.160417 GTCTGCAAGTTGAATCCTTCCG 59.840 50.000 7.16 0.00 33.76 4.30
2218 7800 3.316308 GTGTGTCTGCAAGTTGAATCCTT 59.684 43.478 7.16 0.00 33.76 3.36
2224 7806 2.279741 GTCTGTGTGTCTGCAAGTTGA 58.720 47.619 7.16 0.00 33.76 3.18
2225 7807 1.331756 GGTCTGTGTGTCTGCAAGTTG 59.668 52.381 0.00 0.00 33.76 3.16
2226 7808 1.210478 AGGTCTGTGTGTCTGCAAGTT 59.790 47.619 0.00 0.00 33.76 2.66
2228 7810 2.297315 TCTAGGTCTGTGTGTCTGCAAG 59.703 50.000 0.00 0.00 0.00 4.01
2229 7811 2.035961 GTCTAGGTCTGTGTGTCTGCAA 59.964 50.000 0.00 0.00 0.00 4.08
2232 7814 2.152016 TCGTCTAGGTCTGTGTGTCTG 58.848 52.381 0.00 0.00 0.00 3.51
2234 7816 2.664971 CGTTCGTCTAGGTCTGTGTGTC 60.665 54.545 0.00 0.00 0.00 3.67
2235 7817 1.266175 CGTTCGTCTAGGTCTGTGTGT 59.734 52.381 0.00 0.00 0.00 3.72
2236 7818 1.534163 TCGTTCGTCTAGGTCTGTGTG 59.466 52.381 0.00 0.00 0.00 3.82
2237 7819 1.888215 TCGTTCGTCTAGGTCTGTGT 58.112 50.000 0.00 0.00 0.00 3.72
2238 7820 2.483106 TCTTCGTTCGTCTAGGTCTGTG 59.517 50.000 0.00 0.00 0.00 3.66
2241 7823 2.608546 CGATCTTCGTTCGTCTAGGTCT 59.391 50.000 0.00 0.00 34.72 3.85
2242 7824 2.286301 CCGATCTTCGTTCGTCTAGGTC 60.286 54.545 0.00 0.00 38.40 3.85
2244 7826 1.938577 TCCGATCTTCGTTCGTCTAGG 59.061 52.381 0.00 0.00 38.40 3.02
2245 7827 3.364167 GGATCCGATCTTCGTTCGTCTAG 60.364 52.174 8.29 0.00 38.40 2.43
2246 7828 2.547211 GGATCCGATCTTCGTTCGTCTA 59.453 50.000 8.29 0.00 38.40 2.59
2247 7829 1.334243 GGATCCGATCTTCGTTCGTCT 59.666 52.381 8.29 0.00 38.40 4.18
2248 7830 1.065102 TGGATCCGATCTTCGTTCGTC 59.935 52.381 7.39 0.00 38.40 4.20
2249 7831 1.100510 TGGATCCGATCTTCGTTCGT 58.899 50.000 7.39 0.00 38.40 3.85
2250 7832 2.423926 ATGGATCCGATCTTCGTTCG 57.576 50.000 7.39 0.00 38.40 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.