Multiple sequence alignment - TraesCS2D01G533200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G533200 chr2D 100.000 2276 0 0 1 2276 617956700 617958975 0.000000e+00 4204.0
1 TraesCS2D01G533200 chr2D 95.995 849 31 1 1431 2276 316324762 316325610 0.000000e+00 1376.0
2 TraesCS2D01G533200 chr2D 85.773 731 67 21 709 1425 617972748 617973455 0.000000e+00 739.0
3 TraesCS2D01G533200 chr2D 82.149 549 68 18 753 1276 587112087 587111544 5.770000e-121 444.0
4 TraesCS2D01G533200 chr1D 97.538 853 20 1 1425 2276 29926448 29925596 0.000000e+00 1458.0
5 TraesCS2D01G533200 chr1D 97.535 852 20 1 1425 2276 379471010 379470160 0.000000e+00 1456.0
6 TraesCS2D01G533200 chr1D 97.048 847 22 2 1431 2276 400172752 400173596 0.000000e+00 1423.0
7 TraesCS2D01G533200 chr1D 87.879 132 16 0 1 132 397639103 397638972 3.030000e-34 156.0
8 TraesCS2D01G533200 chr5D 97.288 848 23 0 1429 2276 434361872 434361025 0.000000e+00 1439.0
9 TraesCS2D01G533200 chr5D 80.282 213 34 5 4 215 524497819 524497614 1.090000e-33 154.0
10 TraesCS2D01G533200 chr3D 97.294 850 20 3 1428 2276 15326117 15325270 0.000000e+00 1439.0
11 TraesCS2D01G533200 chr3D 81.702 235 31 6 1 228 161718297 161718526 3.860000e-43 185.0
12 TraesCS2D01G533200 chr7D 96.213 845 31 1 1432 2276 383280833 383279990 0.000000e+00 1382.0
13 TraesCS2D01G533200 chr7D 96.009 852 30 2 1428 2276 517344040 517344890 0.000000e+00 1382.0
14 TraesCS2D01G533200 chr7D 85.034 147 21 1 2 148 576893346 576893201 5.070000e-32 148.0
15 TraesCS2D01G533200 chr7D 87.387 111 14 0 1 111 607305138 607305248 6.600000e-26 128.0
16 TraesCS2D01G533200 chr7A 92.335 848 60 4 1430 2276 210691491 210690648 0.000000e+00 1201.0
17 TraesCS2D01G533200 chr2B 89.804 510 34 10 807 1302 753952269 753952774 2.470000e-179 638.0
18 TraesCS2D01G533200 chr2B 83.526 607 54 28 709 1302 754001020 754001593 2.000000e-145 525.0
19 TraesCS2D01G533200 chr2B 83.394 548 61 22 753 1276 708863536 708862995 4.400000e-132 481.0
20 TraesCS2D01G533200 chr2B 92.256 297 19 2 994 1289 753986889 753987182 3.500000e-113 418.0
21 TraesCS2D01G533200 chr2B 89.825 285 23 3 992 1276 753974082 753974360 5.980000e-96 361.0
22 TraesCS2D01G533200 chr2B 89.691 97 9 1 1330 1425 753952765 753952861 3.070000e-24 122.0
23 TraesCS2D01G533200 chr2A 82.857 595 67 23 709 1289 748537571 748538144 3.380000e-138 501.0
24 TraesCS2D01G533200 chr2A 90.278 288 24 3 981 1268 748528057 748528340 7.680000e-100 374.0
25 TraesCS2D01G533200 chr2A 95.455 44 2 0 1333 1376 748533778 748533821 1.130000e-08 71.3
26 TraesCS2D01G533200 chr3A 83.628 226 32 2 1 226 16154424 16154644 8.240000e-50 207.0
27 TraesCS2D01G533200 chr6A 81.857 237 35 5 1 235 535980836 535981066 2.310000e-45 193.0
28 TraesCS2D01G533200 chr1B 81.116 233 35 6 1 231 431405211 431404986 6.460000e-41 178.0
29 TraesCS2D01G533200 chr5A 81.081 148 27 1 1 148 311278521 311278375 1.430000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G533200 chr2D 617956700 617958975 2275 False 4204.00 4204 100.0000 1 2276 1 chr2D.!!$F2 2275
1 TraesCS2D01G533200 chr2D 316324762 316325610 848 False 1376.00 1376 95.9950 1431 2276 1 chr2D.!!$F1 845
2 TraesCS2D01G533200 chr2D 617972748 617973455 707 False 739.00 739 85.7730 709 1425 1 chr2D.!!$F3 716
3 TraesCS2D01G533200 chr2D 587111544 587112087 543 True 444.00 444 82.1490 753 1276 1 chr2D.!!$R1 523
4 TraesCS2D01G533200 chr1D 29925596 29926448 852 True 1458.00 1458 97.5380 1425 2276 1 chr1D.!!$R1 851
5 TraesCS2D01G533200 chr1D 379470160 379471010 850 True 1456.00 1456 97.5350 1425 2276 1 chr1D.!!$R2 851
6 TraesCS2D01G533200 chr1D 400172752 400173596 844 False 1423.00 1423 97.0480 1431 2276 1 chr1D.!!$F1 845
7 TraesCS2D01G533200 chr5D 434361025 434361872 847 True 1439.00 1439 97.2880 1429 2276 1 chr5D.!!$R1 847
8 TraesCS2D01G533200 chr3D 15325270 15326117 847 True 1439.00 1439 97.2940 1428 2276 1 chr3D.!!$R1 848
9 TraesCS2D01G533200 chr7D 383279990 383280833 843 True 1382.00 1382 96.2130 1432 2276 1 chr7D.!!$R1 844
10 TraesCS2D01G533200 chr7D 517344040 517344890 850 False 1382.00 1382 96.0090 1428 2276 1 chr7D.!!$F1 848
11 TraesCS2D01G533200 chr7A 210690648 210691491 843 True 1201.00 1201 92.3350 1430 2276 1 chr7A.!!$R1 846
12 TraesCS2D01G533200 chr2B 754001020 754001593 573 False 525.00 525 83.5260 709 1302 1 chr2B.!!$F3 593
13 TraesCS2D01G533200 chr2B 708862995 708863536 541 True 481.00 481 83.3940 753 1276 1 chr2B.!!$R1 523
14 TraesCS2D01G533200 chr2B 753952269 753952861 592 False 380.00 638 89.7475 807 1425 2 chr2B.!!$F4 618
15 TraesCS2D01G533200 chr2A 748533778 748538144 4366 False 286.15 501 89.1560 709 1376 2 chr2A.!!$F2 667


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
559 560 0.034198 TTGCACACTTAGCTACGCCA 59.966 50.0 0.0 0.0 0.0 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1798 4973 1.267121 GAGGAGGTAGTTGTCTGGCA 58.733 55.0 0.0 0.0 0.0 4.92 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.955887 GACAAACTCGAAGAAGTAGCG 57.044 47.619 0.00 0.00 34.09 4.26
21 22 2.059541 ACAAACTCGAAGAAGTAGCGC 58.940 47.619 0.00 0.00 34.09 5.92
23 24 0.456312 AACTCGAAGAAGTAGCGCGG 60.456 55.000 8.83 0.00 34.09 6.46
24 25 1.136984 CTCGAAGAAGTAGCGCGGT 59.863 57.895 17.70 17.70 34.09 5.68
25 26 0.862283 CTCGAAGAAGTAGCGCGGTC 60.862 60.000 16.92 6.88 34.09 4.79
26 27 1.154093 CGAAGAAGTAGCGCGGTCA 60.154 57.895 16.92 0.00 0.00 4.02
27 28 0.525668 CGAAGAAGTAGCGCGGTCAT 60.526 55.000 16.92 0.55 0.00 3.06
28 29 1.201343 GAAGAAGTAGCGCGGTCATC 58.799 55.000 16.92 11.98 0.00 2.92
48 49 4.814294 CCCGAGCACCGCACCTAC 62.814 72.222 0.00 0.00 36.84 3.18
50 51 4.111016 CGAGCACCGCACCTACGA 62.111 66.667 0.00 0.00 34.06 3.43
51 52 2.202623 GAGCACCGCACCTACGAG 60.203 66.667 0.00 0.00 34.06 4.18
52 53 3.701604 GAGCACCGCACCTACGAGG 62.702 68.421 0.00 0.00 42.49 4.63
54 55 2.181021 CACCGCACCTACGAGGAC 59.819 66.667 7.76 0.05 37.67 3.85
55 56 2.035312 ACCGCACCTACGAGGACT 59.965 61.111 7.76 0.00 37.67 3.85
56 57 2.341101 ACCGCACCTACGAGGACTG 61.341 63.158 7.76 0.00 37.67 3.51
57 58 2.044555 CCGCACCTACGAGGACTGA 61.045 63.158 7.76 0.00 37.67 3.41
58 59 1.592400 CCGCACCTACGAGGACTGAA 61.592 60.000 7.76 0.00 37.67 3.02
59 60 0.242825 CGCACCTACGAGGACTGAAA 59.757 55.000 7.76 0.00 37.67 2.69
60 61 1.336517 CGCACCTACGAGGACTGAAAA 60.337 52.381 7.76 0.00 37.67 2.29
61 62 2.762745 GCACCTACGAGGACTGAAAAA 58.237 47.619 7.76 0.00 37.67 1.94
84 85 9.565090 AAAAACCTAACCTAAACTACTAACTGG 57.435 33.333 0.00 0.00 0.00 4.00
85 86 8.496534 AAACCTAACCTAAACTACTAACTGGA 57.503 34.615 0.00 0.00 0.00 3.86
86 87 7.715266 ACCTAACCTAAACTACTAACTGGAG 57.285 40.000 0.00 0.00 0.00 3.86
88 89 4.715527 ACCTAAACTACTAACTGGAGCG 57.284 45.455 0.00 0.00 0.00 5.03
90 91 3.698040 CCTAAACTACTAACTGGAGCGGA 59.302 47.826 0.00 0.00 0.00 5.54
91 92 3.870633 AAACTACTAACTGGAGCGGAG 57.129 47.619 0.00 0.00 0.00 4.63
93 94 0.386113 CTACTAACTGGAGCGGAGGC 59.614 60.000 0.00 0.00 40.37 4.70
95 96 1.153549 CTAACTGGAGCGGAGGCAC 60.154 63.158 0.00 0.00 43.41 5.01
105 106 2.124278 GGAGGCACCGGAATTCCC 60.124 66.667 19.01 4.42 0.00 3.97
106 107 2.124278 GAGGCACCGGAATTCCCC 60.124 66.667 19.01 13.55 0.00 4.81
107 108 2.614013 AGGCACCGGAATTCCCCT 60.614 61.111 19.01 15.60 0.00 4.79
108 109 2.124278 GGCACCGGAATTCCCCTC 60.124 66.667 19.01 5.62 0.00 4.30
109 110 2.124278 GCACCGGAATTCCCCTCC 60.124 66.667 19.01 1.73 0.00 4.30
110 111 2.595655 CACCGGAATTCCCCTCCC 59.404 66.667 19.01 0.00 0.00 4.30
111 112 2.694992 ACCGGAATTCCCCTCCCC 60.695 66.667 19.01 0.00 0.00 4.81
113 114 3.087906 CGGAATTCCCCTCCCCGT 61.088 66.667 19.01 0.00 35.83 5.28
116 117 1.223763 GAATTCCCCTCCCCGTCAC 59.776 63.158 0.00 0.00 0.00 3.67
117 118 1.229853 AATTCCCCTCCCCGTCACT 60.230 57.895 0.00 0.00 0.00 3.41
118 119 1.562672 AATTCCCCTCCCCGTCACTG 61.563 60.000 0.00 0.00 0.00 3.66
119 120 4.715130 TCCCCTCCCCGTCACTGG 62.715 72.222 0.00 0.00 0.00 4.00
140 141 2.755929 GCCAGAGCGGTAAACAGAG 58.244 57.895 0.00 0.00 36.97 3.35
141 142 0.741221 GCCAGAGCGGTAAACAGAGG 60.741 60.000 0.00 0.00 36.97 3.69
142 143 0.108138 CCAGAGCGGTAAACAGAGGG 60.108 60.000 0.00 0.00 0.00 4.30
144 145 1.221021 GAGCGGTAAACAGAGGGGG 59.779 63.158 0.00 0.00 0.00 5.40
145 146 1.229400 AGCGGTAAACAGAGGGGGA 60.229 57.895 0.00 0.00 0.00 4.81
146 147 1.221021 GCGGTAAACAGAGGGGGAG 59.779 63.158 0.00 0.00 0.00 4.30
147 148 1.905512 CGGTAAACAGAGGGGGAGG 59.094 63.158 0.00 0.00 0.00 4.30
148 149 1.623542 CGGTAAACAGAGGGGGAGGG 61.624 65.000 0.00 0.00 0.00 4.30
149 150 1.279749 GGTAAACAGAGGGGGAGGGG 61.280 65.000 0.00 0.00 0.00 4.79
150 151 1.084084 TAAACAGAGGGGGAGGGGG 59.916 63.158 0.00 0.00 0.00 5.40
165 166 4.796495 GGGGCGAATCAACGGGCT 62.796 66.667 0.00 0.00 0.00 5.19
166 167 3.202706 GGGCGAATCAACGGGCTC 61.203 66.667 0.00 0.00 0.00 4.70
167 168 3.564027 GGCGAATCAACGGGCTCG 61.564 66.667 3.27 3.27 43.02 5.03
179 180 2.200337 GGGCTCGTGGGCAAAGTTT 61.200 57.895 0.00 0.00 42.84 2.66
181 182 1.452145 GGCTCGTGGGCAAAGTTTCA 61.452 55.000 0.00 0.00 40.53 2.69
182 183 0.383949 GCTCGTGGGCAAAGTTTCAA 59.616 50.000 0.00 0.00 0.00 2.69
183 184 1.600413 GCTCGTGGGCAAAGTTTCAAG 60.600 52.381 0.00 0.00 0.00 3.02
185 186 1.946768 TCGTGGGCAAAGTTTCAAGAG 59.053 47.619 0.00 0.00 0.00 2.85
186 187 1.946768 CGTGGGCAAAGTTTCAAGAGA 59.053 47.619 0.00 0.00 0.00 3.10
187 188 2.357637 CGTGGGCAAAGTTTCAAGAGAA 59.642 45.455 0.00 0.00 0.00 2.87
188 189 3.181491 CGTGGGCAAAGTTTCAAGAGAAA 60.181 43.478 0.00 0.00 41.26 2.52
194 195 6.183360 GGGCAAAGTTTCAAGAGAAAAGTTTG 60.183 38.462 18.01 18.01 44.75 2.93
196 197 6.765089 CAAAGTTTCAAGAGAAAAGTTTGCC 58.235 36.000 13.04 0.00 44.75 4.52
200 201 6.039829 AGTTTCAAGAGAAAAGTTTGCCCTAG 59.960 38.462 0.00 0.00 44.75 3.02
201 202 5.304686 TCAAGAGAAAAGTTTGCCCTAGA 57.695 39.130 0.00 0.00 0.00 2.43
203 204 3.665190 AGAGAAAAGTTTGCCCTAGACG 58.335 45.455 0.00 0.00 0.00 4.18
205 206 1.199327 GAAAAGTTTGCCCTAGACGCC 59.801 52.381 0.00 0.00 0.00 5.68
207 208 1.272807 AAGTTTGCCCTAGACGCCTA 58.727 50.000 0.00 0.00 0.00 3.93
208 209 0.824759 AGTTTGCCCTAGACGCCTAG 59.175 55.000 0.00 0.00 41.58 3.02
216 217 1.618487 CTAGACGCCTAGGGTTAGGG 58.382 60.000 11.72 0.00 45.66 3.53
217 218 1.144503 CTAGACGCCTAGGGTTAGGGA 59.855 57.143 11.72 0.00 45.66 4.20
218 219 0.337428 AGACGCCTAGGGTTAGGGAA 59.663 55.000 11.72 0.00 45.66 3.97
221 222 0.398098 CGCCTAGGGTTAGGGAAGGA 60.398 60.000 11.72 0.00 45.66 3.36
222 223 1.889174 GCCTAGGGTTAGGGAAGGAA 58.111 55.000 11.72 0.00 45.66 3.36
223 224 2.202707 GCCTAGGGTTAGGGAAGGAAA 58.797 52.381 11.72 0.00 45.66 3.13
224 225 2.579400 GCCTAGGGTTAGGGAAGGAAAA 59.421 50.000 11.72 0.00 45.66 2.29
225 226 3.624205 GCCTAGGGTTAGGGAAGGAAAAC 60.624 52.174 11.72 0.00 45.66 2.43
226 227 2.873094 AGGGTTAGGGAAGGAAAACG 57.127 50.000 0.00 0.00 0.00 3.60
227 228 2.341695 AGGGTTAGGGAAGGAAAACGA 58.658 47.619 0.00 0.00 0.00 3.85
229 230 2.303890 GGGTTAGGGAAGGAAAACGAGA 59.696 50.000 0.00 0.00 0.00 4.04
230 231 3.244665 GGGTTAGGGAAGGAAAACGAGAA 60.245 47.826 0.00 0.00 0.00 2.87
232 233 4.262765 GGTTAGGGAAGGAAAACGAGAAGA 60.263 45.833 0.00 0.00 0.00 2.87
234 235 4.009370 AGGGAAGGAAAACGAGAAGAAG 57.991 45.455 0.00 0.00 0.00 2.85
235 236 2.484651 GGGAAGGAAAACGAGAAGAAGC 59.515 50.000 0.00 0.00 0.00 3.86
236 237 2.484651 GGAAGGAAAACGAGAAGAAGCC 59.515 50.000 0.00 0.00 0.00 4.35
237 238 1.797025 AGGAAAACGAGAAGAAGCCG 58.203 50.000 0.00 0.00 0.00 5.52
238 239 0.796927 GGAAAACGAGAAGAAGCCGG 59.203 55.000 0.00 0.00 0.00 6.13
239 240 0.796927 GAAAACGAGAAGAAGCCGGG 59.203 55.000 2.18 0.00 0.00 5.73
240 241 0.395312 AAAACGAGAAGAAGCCGGGA 59.605 50.000 2.18 0.00 0.00 5.14
242 243 0.613777 AACGAGAAGAAGCCGGGAAT 59.386 50.000 2.18 0.00 0.00 3.01
243 244 0.613777 ACGAGAAGAAGCCGGGAATT 59.386 50.000 2.18 0.00 0.00 2.17
244 245 1.003233 ACGAGAAGAAGCCGGGAATTT 59.997 47.619 2.18 0.00 0.00 1.82
245 246 1.398390 CGAGAAGAAGCCGGGAATTTG 59.602 52.381 2.18 0.00 0.00 2.32
247 248 3.606687 GAGAAGAAGCCGGGAATTTGTA 58.393 45.455 2.18 0.00 0.00 2.41
249 250 4.010349 AGAAGAAGCCGGGAATTTGTAAG 58.990 43.478 2.18 0.00 0.00 2.34
250 251 3.434940 AGAAGCCGGGAATTTGTAAGT 57.565 42.857 2.18 0.00 0.00 2.24
251 252 3.344515 AGAAGCCGGGAATTTGTAAGTC 58.655 45.455 2.18 0.00 0.00 3.01
252 253 3.009143 AGAAGCCGGGAATTTGTAAGTCT 59.991 43.478 2.18 0.00 0.00 3.24
253 254 4.224370 AGAAGCCGGGAATTTGTAAGTCTA 59.776 41.667 2.18 0.00 0.00 2.59
254 255 4.772886 AGCCGGGAATTTGTAAGTCTAT 57.227 40.909 2.18 0.00 0.00 1.98
255 256 5.881923 AGCCGGGAATTTGTAAGTCTATA 57.118 39.130 2.18 0.00 0.00 1.31
256 257 6.243216 AGCCGGGAATTTGTAAGTCTATAA 57.757 37.500 2.18 0.00 0.00 0.98
257 258 6.655930 AGCCGGGAATTTGTAAGTCTATAAA 58.344 36.000 2.18 0.00 0.00 1.40
261 262 9.550406 CCGGGAATTTGTAAGTCTATAAACATA 57.450 33.333 0.00 0.00 0.00 2.29
279 280 7.745620 AAACATAACTTCGGAAATGAAGAGT 57.254 32.000 10.22 1.21 46.64 3.24
280 281 7.745620 AACATAACTTCGGAAATGAAGAGTT 57.254 32.000 10.22 1.99 46.64 3.01
283 284 7.876068 ACATAACTTCGGAAATGAAGAGTTACA 59.124 33.333 10.22 0.00 46.64 2.41
284 285 8.717821 CATAACTTCGGAAATGAAGAGTTACAA 58.282 33.333 10.22 0.00 46.64 2.41
285 286 6.787085 ACTTCGGAAATGAAGAGTTACAAG 57.213 37.500 10.22 0.00 46.64 3.16
286 287 6.522054 ACTTCGGAAATGAAGAGTTACAAGA 58.478 36.000 10.22 0.00 46.64 3.02
287 288 6.990349 ACTTCGGAAATGAAGAGTTACAAGAA 59.010 34.615 10.22 0.00 46.64 2.52
288 289 7.497909 ACTTCGGAAATGAAGAGTTACAAGAAA 59.502 33.333 10.22 0.00 46.64 2.52
289 290 7.795482 TCGGAAATGAAGAGTTACAAGAAAA 57.205 32.000 0.00 0.00 0.00 2.29
290 291 8.391075 TCGGAAATGAAGAGTTACAAGAAAAT 57.609 30.769 0.00 0.00 0.00 1.82
292 293 9.463443 CGGAAATGAAGAGTTACAAGAAAATTT 57.537 29.630 0.00 0.00 0.00 1.82
369 370 9.898152 AAACAAAGGGAATTTTAAATGTGAAGA 57.102 25.926 0.00 0.00 0.00 2.87
371 372 9.325198 ACAAAGGGAATTTTAAATGTGAAGAAC 57.675 29.630 0.00 0.00 0.00 3.01
372 373 9.546428 CAAAGGGAATTTTAAATGTGAAGAACT 57.454 29.630 0.00 0.00 0.00 3.01
373 374 9.546428 AAAGGGAATTTTAAATGTGAAGAACTG 57.454 29.630 0.00 0.00 0.00 3.16
374 375 8.477419 AGGGAATTTTAAATGTGAAGAACTGA 57.523 30.769 0.00 0.00 0.00 3.41
375 376 8.579863 AGGGAATTTTAAATGTGAAGAACTGAG 58.420 33.333 0.00 0.00 0.00 3.35
376 377 8.576442 GGGAATTTTAAATGTGAAGAACTGAGA 58.424 33.333 0.00 0.00 0.00 3.27
383 384 6.814506 AATGTGAAGAACTGAGATTTGAGG 57.185 37.500 0.00 0.00 0.00 3.86
384 385 5.551305 TGTGAAGAACTGAGATTTGAGGA 57.449 39.130 0.00 0.00 0.00 3.71
387 388 7.000472 TGTGAAGAACTGAGATTTGAGGAAAT 59.000 34.615 0.00 0.00 34.29 2.17
388 389 8.156820 TGTGAAGAACTGAGATTTGAGGAAATA 58.843 33.333 0.00 0.00 31.58 1.40
389 390 9.003658 GTGAAGAACTGAGATTTGAGGAAATAA 57.996 33.333 0.00 0.00 31.58 1.40
390 391 9.573166 TGAAGAACTGAGATTTGAGGAAATAAA 57.427 29.630 0.00 0.00 31.58 1.40
393 394 9.525826 AGAACTGAGATTTGAGGAAATAAATGT 57.474 29.630 0.00 0.00 31.58 2.71
458 459 8.169977 TGATAGCTATCCAATTTCACATTTCC 57.830 34.615 27.08 1.34 31.71 3.13
460 461 9.507329 GATAGCTATCCAATTTCACATTTCCTA 57.493 33.333 21.18 0.00 0.00 2.94
520 521 9.942526 AGTATTTTCATTTCCCCATTCTATTCT 57.057 29.630 0.00 0.00 0.00 2.40
523 524 8.434589 TTTTCATTTCCCCATTCTATTCTTGT 57.565 30.769 0.00 0.00 0.00 3.16
524 525 8.434589 TTTCATTTCCCCATTCTATTCTTGTT 57.565 30.769 0.00 0.00 0.00 2.83
525 526 7.645058 TCATTTCCCCATTCTATTCTTGTTC 57.355 36.000 0.00 0.00 0.00 3.18
526 527 6.607198 TCATTTCCCCATTCTATTCTTGTTCC 59.393 38.462 0.00 0.00 0.00 3.62
527 528 5.796502 TTCCCCATTCTATTCTTGTTCCT 57.203 39.130 0.00 0.00 0.00 3.36
528 529 5.796502 TCCCCATTCTATTCTTGTTCCTT 57.203 39.130 0.00 0.00 0.00 3.36
529 530 6.152638 TCCCCATTCTATTCTTGTTCCTTT 57.847 37.500 0.00 0.00 0.00 3.11
530 531 6.561294 TCCCCATTCTATTCTTGTTCCTTTT 58.439 36.000 0.00 0.00 0.00 2.27
531 532 6.663523 TCCCCATTCTATTCTTGTTCCTTTTC 59.336 38.462 0.00 0.00 0.00 2.29
532 533 6.437162 CCCCATTCTATTCTTGTTCCTTTTCA 59.563 38.462 0.00 0.00 0.00 2.69
533 534 7.039082 CCCCATTCTATTCTTGTTCCTTTTCAA 60.039 37.037 0.00 0.00 0.00 2.69
534 535 7.814587 CCCATTCTATTCTTGTTCCTTTTCAAC 59.185 37.037 0.00 0.00 0.00 3.18
535 536 8.579863 CCATTCTATTCTTGTTCCTTTTCAACT 58.420 33.333 0.00 0.00 0.00 3.16
536 537 9.971922 CATTCTATTCTTGTTCCTTTTCAACTT 57.028 29.630 0.00 0.00 0.00 2.66
543 544 8.419076 TCTTGTTCCTTTTCAACTTTATTTGC 57.581 30.769 0.00 0.00 0.00 3.68
544 545 8.037758 TCTTGTTCCTTTTCAACTTTATTTGCA 58.962 29.630 0.00 0.00 0.00 4.08
545 546 7.532682 TGTTCCTTTTCAACTTTATTTGCAC 57.467 32.000 0.00 0.00 0.00 4.57
546 547 7.099764 TGTTCCTTTTCAACTTTATTTGCACA 58.900 30.769 0.00 0.00 0.00 4.57
547 548 7.064016 TGTTCCTTTTCAACTTTATTTGCACAC 59.936 33.333 0.00 0.00 0.00 3.82
550 551 8.470805 TCCTTTTCAACTTTATTTGCACACTTA 58.529 29.630 0.00 0.00 0.00 2.24
551 552 8.755018 CCTTTTCAACTTTATTTGCACACTTAG 58.245 33.333 0.00 0.00 0.00 2.18
552 553 7.692908 TTTCAACTTTATTTGCACACTTAGC 57.307 32.000 0.00 0.00 0.00 3.09
553 554 6.633500 TCAACTTTATTTGCACACTTAGCT 57.367 33.333 0.00 0.00 0.00 3.32
554 555 7.737972 TCAACTTTATTTGCACACTTAGCTA 57.262 32.000 0.00 0.00 0.00 3.32
555 556 7.581476 TCAACTTTATTTGCACACTTAGCTAC 58.419 34.615 0.00 0.00 0.00 3.58
556 557 6.165659 ACTTTATTTGCACACTTAGCTACG 57.834 37.500 0.00 0.00 0.00 3.51
557 558 4.593597 TTATTTGCACACTTAGCTACGC 57.406 40.909 0.00 0.00 0.00 4.42
559 560 0.034198 TTGCACACTTAGCTACGCCA 59.966 50.000 0.00 0.00 0.00 5.69
561 562 0.652592 GCACACTTAGCTACGCCATG 59.347 55.000 0.00 0.00 0.00 3.66
562 563 2.007049 GCACACTTAGCTACGCCATGT 61.007 52.381 0.00 0.00 0.00 3.21
564 565 0.652592 CACTTAGCTACGCCATGTGC 59.347 55.000 0.00 0.00 0.00 4.57
565 566 0.249120 ACTTAGCTACGCCATGTGCA 59.751 50.000 0.00 0.00 41.33 4.57
566 567 1.338674 ACTTAGCTACGCCATGTGCAA 60.339 47.619 0.00 0.00 41.33 4.08
568 569 1.814793 TAGCTACGCCATGTGCAAAA 58.185 45.000 0.00 0.00 41.33 2.44
569 570 0.240945 AGCTACGCCATGTGCAAAAC 59.759 50.000 0.00 0.00 41.33 2.43
572 573 0.312416 TACGCCATGTGCAAAACCAC 59.688 50.000 0.00 0.00 41.33 4.16
573 574 1.664333 CGCCATGTGCAAAACCACC 60.664 57.895 0.00 0.00 41.33 4.61
574 575 1.747774 GCCATGTGCAAAACCACCT 59.252 52.632 0.00 0.00 40.77 4.00
575 576 0.319813 GCCATGTGCAAAACCACCTC 60.320 55.000 0.00 0.00 40.77 3.85
576 577 1.331214 CCATGTGCAAAACCACCTCT 58.669 50.000 0.00 0.00 34.85 3.69
578 579 2.228822 CCATGTGCAAAACCACCTCTAC 59.771 50.000 0.00 0.00 34.85 2.59
580 581 0.872388 GTGCAAAACCACCTCTACGG 59.128 55.000 0.00 0.00 39.35 4.02
582 583 1.693062 TGCAAAACCACCTCTACGGTA 59.307 47.619 0.00 0.00 46.94 4.02
583 584 2.104451 TGCAAAACCACCTCTACGGTAA 59.896 45.455 0.00 0.00 46.94 2.85
584 585 2.481568 GCAAAACCACCTCTACGGTAAC 59.518 50.000 0.00 0.00 46.94 2.50
585 586 3.804759 GCAAAACCACCTCTACGGTAACT 60.805 47.826 0.00 0.00 46.94 2.24
586 587 4.383173 CAAAACCACCTCTACGGTAACTT 58.617 43.478 0.00 0.00 46.94 2.66
587 588 3.949842 AACCACCTCTACGGTAACTTC 57.050 47.619 0.00 0.00 46.94 3.01
588 589 2.880443 ACCACCTCTACGGTAACTTCA 58.120 47.619 0.00 0.00 46.94 3.02
589 590 3.233507 ACCACCTCTACGGTAACTTCAA 58.766 45.455 0.00 0.00 46.94 2.69
590 591 3.642848 ACCACCTCTACGGTAACTTCAAA 59.357 43.478 0.00 0.00 46.94 2.69
591 592 3.992427 CCACCTCTACGGTAACTTCAAAC 59.008 47.826 0.00 0.00 46.94 2.93
594 595 5.699458 CACCTCTACGGTAACTTCAAACAAT 59.301 40.000 0.00 0.00 46.94 2.71
595 596 6.204108 CACCTCTACGGTAACTTCAAACAATT 59.796 38.462 0.00 0.00 46.94 2.32
596 597 6.426025 ACCTCTACGGTAACTTCAAACAATTC 59.574 38.462 0.00 0.00 46.73 2.17
597 598 6.649557 CCTCTACGGTAACTTCAAACAATTCT 59.350 38.462 0.00 0.00 0.00 2.40
599 600 9.199982 CTCTACGGTAACTTCAAACAATTCTAA 57.800 33.333 0.00 0.00 0.00 2.10
600 601 8.981647 TCTACGGTAACTTCAAACAATTCTAAC 58.018 33.333 0.00 0.00 0.00 2.34
602 603 8.161699 ACGGTAACTTCAAACAATTCTAACAT 57.838 30.769 0.00 0.00 0.00 2.71
609 610 9.480053 ACTTCAAACAATTCTAACATTTGATGG 57.520 29.630 12.59 6.48 38.64 3.51
662 663 2.905415 AAAGGAATCAGGACCATGCA 57.095 45.000 0.00 0.00 0.00 3.96
663 664 3.393426 AAAGGAATCAGGACCATGCAT 57.607 42.857 0.00 0.00 0.00 3.96
665 666 3.784511 AGGAATCAGGACCATGCATAG 57.215 47.619 0.00 0.00 0.00 2.23
666 667 3.051581 AGGAATCAGGACCATGCATAGT 58.948 45.455 0.00 0.00 0.00 2.12
667 668 3.461085 AGGAATCAGGACCATGCATAGTT 59.539 43.478 0.00 0.00 0.00 2.24
668 669 3.567164 GGAATCAGGACCATGCATAGTTG 59.433 47.826 0.00 0.00 0.00 3.16
670 671 3.548745 TCAGGACCATGCATAGTTGAG 57.451 47.619 0.00 0.00 0.00 3.02
671 672 2.171237 TCAGGACCATGCATAGTTGAGG 59.829 50.000 0.00 0.00 0.00 3.86
672 673 1.492176 AGGACCATGCATAGTTGAGGG 59.508 52.381 0.00 0.00 0.00 4.30
673 674 1.477558 GGACCATGCATAGTTGAGGGG 60.478 57.143 0.00 0.00 0.00 4.79
674 675 0.106519 ACCATGCATAGTTGAGGGGC 60.107 55.000 0.00 0.00 0.00 5.80
675 676 0.825010 CCATGCATAGTTGAGGGGCC 60.825 60.000 0.00 0.00 0.00 5.80
676 677 0.106569 CATGCATAGTTGAGGGGCCA 60.107 55.000 4.39 0.00 0.00 5.36
677 678 0.855598 ATGCATAGTTGAGGGGCCAT 59.144 50.000 4.39 0.00 0.00 4.40
678 679 1.517238 TGCATAGTTGAGGGGCCATA 58.483 50.000 4.39 0.00 0.00 2.74
679 680 1.849692 TGCATAGTTGAGGGGCCATAA 59.150 47.619 4.39 0.00 0.00 1.90
680 681 2.158623 TGCATAGTTGAGGGGCCATAAG 60.159 50.000 4.39 0.00 0.00 1.73
682 683 3.072476 GCATAGTTGAGGGGCCATAAGTA 59.928 47.826 4.39 4.81 0.00 2.24
683 684 4.642429 CATAGTTGAGGGGCCATAAGTAC 58.358 47.826 4.39 0.00 0.00 2.73
684 685 2.846950 AGTTGAGGGGCCATAAGTACT 58.153 47.619 4.39 0.00 0.00 2.73
685 686 3.190439 AGTTGAGGGGCCATAAGTACTT 58.810 45.455 13.68 13.68 0.00 2.24
686 687 3.591977 AGTTGAGGGGCCATAAGTACTTT 59.408 43.478 14.49 0.00 0.00 2.66
688 689 4.668138 TGAGGGGCCATAAGTACTTTTT 57.332 40.909 14.49 0.00 0.00 1.94
722 3808 1.886886 AAAAACGATAGGTGTGGCGT 58.113 45.000 0.00 0.00 43.77 5.68
748 3834 2.136298 AGCAGAGTAGCAGCAGAGTA 57.864 50.000 0.00 0.00 36.85 2.59
772 3861 1.111116 CGGAAGCACCCGGTATCCTA 61.111 60.000 0.00 0.00 45.43 2.94
786 3876 4.381292 CGGTATCCTAGAAAACCAACGTCT 60.381 45.833 0.00 0.00 32.04 4.18
805 3895 0.463654 TGCGACCACTGTTTTGCTCT 60.464 50.000 0.00 0.00 0.00 4.09
814 3904 2.972713 ACTGTTTTGCTCTAGACCTCCA 59.027 45.455 0.00 0.00 0.00 3.86
815 3905 3.007398 ACTGTTTTGCTCTAGACCTCCAG 59.993 47.826 0.00 0.00 0.00 3.86
853 3958 1.141881 CTCGTCCCAATCCCACTCG 59.858 63.158 0.00 0.00 0.00 4.18
919 4056 4.352893 TCATTCCATACTCCACACTCAGA 58.647 43.478 0.00 0.00 0.00 3.27
1077 4233 2.673523 CTCAAGGACCAGGCTGGG 59.326 66.667 35.34 18.45 43.37 4.45
1107 4263 1.516423 GAACTACGCCCTCAGGTCC 59.484 63.158 0.00 0.00 34.57 4.46
1108 4264 1.229082 AACTACGCCCTCAGGTCCA 60.229 57.895 0.00 0.00 34.57 4.02
1109 4265 0.617820 AACTACGCCCTCAGGTCCAT 60.618 55.000 0.00 0.00 34.57 3.41
1122 4278 3.488569 TCCATCATCCACCGGGCC 61.489 66.667 6.32 0.00 0.00 5.80
1234 4390 4.806339 AGAAGGCCGAGGAGGGGG 62.806 72.222 0.00 0.00 41.48 5.40
1289 4445 1.990563 CAATTAGCAGCTGCAACTTGC 59.009 47.619 38.24 12.83 45.16 4.01
1298 4473 0.168348 CTGCAACTTGCTGCTAGCTG 59.832 55.000 17.23 16.92 45.31 4.24
1299 4474 0.250424 TGCAACTTGCTGCTAGCTGA 60.250 50.000 24.19 7.59 45.31 4.26
1300 4475 0.447011 GCAACTTGCTGCTAGCTGAG 59.553 55.000 24.19 15.55 42.97 3.35
1301 4476 1.085091 CAACTTGCTGCTAGCTGAGG 58.915 55.000 24.19 14.42 42.97 3.86
1302 4477 0.979665 AACTTGCTGCTAGCTGAGGA 59.020 50.000 24.19 8.96 42.97 3.71
1303 4478 0.536260 ACTTGCTGCTAGCTGAGGAG 59.464 55.000 24.19 18.02 46.16 3.69
1304 4479 0.179078 CTTGCTGCTAGCTGAGGAGG 60.179 60.000 24.19 8.42 43.67 4.30
1305 4480 1.620739 TTGCTGCTAGCTGAGGAGGG 61.621 60.000 24.19 2.29 43.67 4.30
1306 4481 2.806009 GCTGCTAGCTGAGGAGGGG 61.806 68.421 24.19 1.34 43.67 4.79
1307 4482 2.765807 TGCTAGCTGAGGAGGGGC 60.766 66.667 17.23 0.00 0.00 5.80
1308 4483 2.445654 GCTAGCTGAGGAGGGGCT 60.446 66.667 7.70 0.00 39.74 5.19
1309 4484 2.806009 GCTAGCTGAGGAGGGGCTG 61.806 68.421 7.70 0.00 37.50 4.85
1310 4485 1.075674 CTAGCTGAGGAGGGGCTGA 60.076 63.158 0.00 0.00 37.50 4.26
1311 4486 1.075674 TAGCTGAGGAGGGGCTGAG 60.076 63.158 0.00 0.00 37.50 3.35
1312 4487 2.595954 TAGCTGAGGAGGGGCTGAGG 62.596 65.000 0.00 0.00 37.50 3.86
1313 4488 2.366167 CTGAGGAGGGGCTGAGGA 59.634 66.667 0.00 0.00 0.00 3.71
1314 4489 2.039624 TGAGGAGGGGCTGAGGAC 59.960 66.667 0.00 0.00 0.00 3.85
1315 4490 3.151022 GAGGAGGGGCTGAGGACG 61.151 72.222 0.00 0.00 0.00 4.79
1316 4491 4.787280 AGGAGGGGCTGAGGACGG 62.787 72.222 0.00 0.00 0.00 4.79
1318 4493 3.775654 GAGGGGCTGAGGACGGTG 61.776 72.222 0.00 0.00 0.00 4.94
1319 4494 4.316823 AGGGGCTGAGGACGGTGA 62.317 66.667 0.00 0.00 0.00 4.02
1320 4495 4.083862 GGGGCTGAGGACGGTGAC 62.084 72.222 0.00 0.00 0.00 3.67
1333 4508 2.823628 GGTGACGTACCTCAACTGC 58.176 57.895 2.97 0.00 46.51 4.40
1334 4509 0.317479 GGTGACGTACCTCAACTGCT 59.683 55.000 2.97 0.00 46.51 4.24
1345 4520 0.243907 TCAACTGCTAGGCGTGTCTC 59.756 55.000 0.00 0.00 0.00 3.36
1379 4554 0.540365 ACCATGGCCTGAAACCTGTG 60.540 55.000 13.04 0.00 0.00 3.66
1391 4566 2.113139 CCTGTGTGGCTTCCCGTT 59.887 61.111 0.00 0.00 0.00 4.44
1397 4572 0.953471 TGTGGCTTCCCGTTGAATCG 60.953 55.000 0.00 0.00 31.06 3.34
1401 4576 1.376683 CTTCCCGTTGAATCGCCCA 60.377 57.895 0.00 0.00 31.06 5.36
1418 4593 3.383185 CGCCCATTGTAAAATACCACCAT 59.617 43.478 0.00 0.00 0.00 3.55
1419 4594 4.692228 GCCCATTGTAAAATACCACCATG 58.308 43.478 0.00 0.00 0.00 3.66
1729 4904 2.745884 CGCCGCCATCTTCCACAA 60.746 61.111 0.00 0.00 0.00 3.33
1798 4973 0.530650 GCCATCGACGTCACCATGAT 60.531 55.000 17.16 6.72 0.00 2.45
2179 5359 3.873812 GGGAATGGCGTCCGGGAT 61.874 66.667 0.00 0.00 38.72 3.85
2256 5436 4.003788 CGCCACCTCCGAACCAGT 62.004 66.667 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.059541 GCGCTACTTCTTCGAGTTTGT 58.940 47.619 0.00 0.00 0.00 2.83
2 3 1.057847 CGCGCTACTTCTTCGAGTTTG 59.942 52.381 5.56 0.00 0.00 2.93
5 6 1.136984 CCGCGCTACTTCTTCGAGT 59.863 57.895 5.56 0.00 0.00 4.18
7 8 1.136147 GACCGCGCTACTTCTTCGA 59.864 57.895 5.56 0.00 0.00 3.71
8 9 0.525668 ATGACCGCGCTACTTCTTCG 60.526 55.000 5.56 0.00 0.00 3.79
10 11 0.179108 GGATGACCGCGCTACTTCTT 60.179 55.000 5.56 0.00 0.00 2.52
11 12 1.437986 GGATGACCGCGCTACTTCT 59.562 57.895 5.56 0.00 0.00 2.85
12 13 4.014065 GGATGACCGCGCTACTTC 57.986 61.111 5.56 4.44 0.00 3.01
31 32 4.814294 GTAGGTGCGGTGCTCGGG 62.814 72.222 2.61 0.00 39.69 5.14
33 34 4.111016 TCGTAGGTGCGGTGCTCG 62.111 66.667 0.00 0.00 42.76 5.03
35 36 3.760035 CCTCGTAGGTGCGGTGCT 61.760 66.667 0.00 0.00 0.00 4.40
36 37 3.755628 TCCTCGTAGGTGCGGTGC 61.756 66.667 1.60 0.00 36.53 5.01
37 38 2.181021 GTCCTCGTAGGTGCGGTG 59.819 66.667 1.60 0.00 36.53 4.94
38 39 2.035312 AGTCCTCGTAGGTGCGGT 59.965 61.111 1.60 0.00 36.53 5.68
39 40 1.592400 TTCAGTCCTCGTAGGTGCGG 61.592 60.000 1.60 0.00 36.53 5.69
40 41 0.242825 TTTCAGTCCTCGTAGGTGCG 59.757 55.000 1.60 0.00 36.53 5.34
41 42 2.450609 TTTTCAGTCCTCGTAGGTGC 57.549 50.000 1.60 0.00 36.53 5.01
58 59 9.565090 CCAGTTAGTAGTTTAGGTTAGGTTTTT 57.435 33.333 0.00 0.00 0.00 1.94
59 60 8.937835 TCCAGTTAGTAGTTTAGGTTAGGTTTT 58.062 33.333 0.00 0.00 0.00 2.43
60 61 8.496534 TCCAGTTAGTAGTTTAGGTTAGGTTT 57.503 34.615 0.00 0.00 0.00 3.27
61 62 7.310299 GCTCCAGTTAGTAGTTTAGGTTAGGTT 60.310 40.741 0.00 0.00 0.00 3.50
63 64 6.571605 GCTCCAGTTAGTAGTTTAGGTTAGG 58.428 44.000 0.00 0.00 0.00 2.69
64 65 6.264088 CGCTCCAGTTAGTAGTTTAGGTTAG 58.736 44.000 0.00 0.00 0.00 2.34
65 66 5.126061 CCGCTCCAGTTAGTAGTTTAGGTTA 59.874 44.000 0.00 0.00 0.00 2.85
66 67 4.081807 CCGCTCCAGTTAGTAGTTTAGGTT 60.082 45.833 0.00 0.00 0.00 3.50
67 68 3.446516 CCGCTCCAGTTAGTAGTTTAGGT 59.553 47.826 0.00 0.00 0.00 3.08
68 69 3.698040 TCCGCTCCAGTTAGTAGTTTAGG 59.302 47.826 0.00 0.00 0.00 2.69
69 70 4.202030 CCTCCGCTCCAGTTAGTAGTTTAG 60.202 50.000 0.00 0.00 0.00 1.85
70 71 3.698040 CCTCCGCTCCAGTTAGTAGTTTA 59.302 47.826 0.00 0.00 0.00 2.01
71 72 2.496470 CCTCCGCTCCAGTTAGTAGTTT 59.504 50.000 0.00 0.00 0.00 2.66
72 73 2.100989 CCTCCGCTCCAGTTAGTAGTT 58.899 52.381 0.00 0.00 0.00 2.24
73 74 1.765230 CCTCCGCTCCAGTTAGTAGT 58.235 55.000 0.00 0.00 0.00 2.73
75 76 0.323999 TGCCTCCGCTCCAGTTAGTA 60.324 55.000 0.00 0.00 35.36 1.82
76 77 1.609501 TGCCTCCGCTCCAGTTAGT 60.610 57.895 0.00 0.00 35.36 2.24
77 78 1.153549 GTGCCTCCGCTCCAGTTAG 60.154 63.158 0.00 0.00 35.36 2.34
79 80 4.021925 GGTGCCTCCGCTCCAGTT 62.022 66.667 0.00 0.00 46.07 3.16
88 89 2.124278 GGGAATTCCGGTGCCTCC 60.124 66.667 18.30 3.65 36.71 4.30
90 91 2.614013 AGGGGAATTCCGGTGCCT 60.614 61.111 18.30 15.30 36.71 4.75
91 92 2.124278 GAGGGGAATTCCGGTGCC 60.124 66.667 18.30 13.27 36.71 5.01
93 94 2.595655 GGGAGGGGAATTCCGGTG 59.404 66.667 18.30 0.00 35.48 4.94
95 96 3.873812 CGGGGAGGGGAATTCCGG 61.874 72.222 18.30 0.00 37.35 5.14
96 97 3.087906 ACGGGGAGGGGAATTCCG 61.088 66.667 18.30 8.12 45.42 4.30
97 98 1.999002 TGACGGGGAGGGGAATTCC 60.999 63.158 16.74 16.74 0.00 3.01
98 99 1.223763 GTGACGGGGAGGGGAATTC 59.776 63.158 0.00 0.00 0.00 2.17
99 100 1.229853 AGTGACGGGGAGGGGAATT 60.230 57.895 0.00 0.00 0.00 2.17
100 101 1.995626 CAGTGACGGGGAGGGGAAT 60.996 63.158 0.00 0.00 0.00 3.01
101 102 2.606519 CAGTGACGGGGAGGGGAA 60.607 66.667 0.00 0.00 0.00 3.97
102 103 4.715130 CCAGTGACGGGGAGGGGA 62.715 72.222 0.00 0.00 0.00 4.81
122 123 0.741221 CCTCTGTTTACCGCTCTGGC 60.741 60.000 0.00 0.00 43.94 4.85
123 124 0.108138 CCCTCTGTTTACCGCTCTGG 60.108 60.000 0.00 0.00 46.41 3.86
124 125 0.108138 CCCCTCTGTTTACCGCTCTG 60.108 60.000 0.00 0.00 0.00 3.35
125 126 1.265454 CCCCCTCTGTTTACCGCTCT 61.265 60.000 0.00 0.00 0.00 4.09
126 127 1.221021 CCCCCTCTGTTTACCGCTC 59.779 63.158 0.00 0.00 0.00 5.03
127 128 1.229400 TCCCCCTCTGTTTACCGCT 60.229 57.895 0.00 0.00 0.00 5.52
128 129 1.221021 CTCCCCCTCTGTTTACCGC 59.779 63.158 0.00 0.00 0.00 5.68
129 130 1.623542 CCCTCCCCCTCTGTTTACCG 61.624 65.000 0.00 0.00 0.00 4.02
130 131 1.279749 CCCCTCCCCCTCTGTTTACC 61.280 65.000 0.00 0.00 0.00 2.85
131 132 1.279749 CCCCCTCCCCCTCTGTTTAC 61.280 65.000 0.00 0.00 0.00 2.01
132 133 1.084084 CCCCCTCCCCCTCTGTTTA 59.916 63.158 0.00 0.00 0.00 2.01
133 134 2.204306 CCCCCTCCCCCTCTGTTT 60.204 66.667 0.00 0.00 0.00 2.83
148 149 4.796495 AGCCCGTTGATTCGCCCC 62.796 66.667 0.00 0.00 0.00 5.80
149 150 3.202706 GAGCCCGTTGATTCGCCC 61.203 66.667 0.00 0.00 0.00 6.13
150 151 3.564027 CGAGCCCGTTGATTCGCC 61.564 66.667 0.00 0.00 0.00 5.54
161 162 2.142357 GAAACTTTGCCCACGAGCCC 62.142 60.000 0.00 0.00 0.00 5.19
163 164 0.383949 TTGAAACTTTGCCCACGAGC 59.616 50.000 0.00 0.00 0.00 5.03
164 165 1.946768 TCTTGAAACTTTGCCCACGAG 59.053 47.619 0.00 0.00 0.00 4.18
165 166 1.946768 CTCTTGAAACTTTGCCCACGA 59.053 47.619 0.00 0.00 0.00 4.35
166 167 1.946768 TCTCTTGAAACTTTGCCCACG 59.053 47.619 0.00 0.00 0.00 4.94
167 168 4.385358 TTTCTCTTGAAACTTTGCCCAC 57.615 40.909 0.00 0.00 37.27 4.61
169 170 5.011090 ACTTTTCTCTTGAAACTTTGCCC 57.989 39.130 0.00 0.00 41.34 5.36
170 171 6.673076 GCAAACTTTTCTCTTGAAACTTTGCC 60.673 38.462 20.94 11.89 45.94 4.52
172 173 6.183360 GGGCAAACTTTTCTCTTGAAACTTTG 60.183 38.462 12.11 12.11 41.34 2.77
174 175 5.187772 AGGGCAAACTTTTCTCTTGAAACTT 59.812 36.000 0.00 0.00 41.34 2.66
175 176 4.711846 AGGGCAAACTTTTCTCTTGAAACT 59.288 37.500 0.00 0.00 41.34 2.66
177 178 6.039382 GTCTAGGGCAAACTTTTCTCTTGAAA 59.961 38.462 0.00 0.00 40.08 2.69
179 180 5.063880 GTCTAGGGCAAACTTTTCTCTTGA 58.936 41.667 0.00 0.00 0.00 3.02
181 182 4.065789 CGTCTAGGGCAAACTTTTCTCTT 58.934 43.478 0.00 0.00 0.00 2.85
182 183 3.665190 CGTCTAGGGCAAACTTTTCTCT 58.335 45.455 0.00 0.00 0.00 3.10
183 184 2.159824 GCGTCTAGGGCAAACTTTTCTC 59.840 50.000 2.35 0.00 0.00 2.87
185 186 1.199327 GGCGTCTAGGGCAAACTTTTC 59.801 52.381 8.60 0.00 0.00 2.29
186 187 1.202891 AGGCGTCTAGGGCAAACTTTT 60.203 47.619 0.00 0.00 34.40 2.27
187 188 0.400594 AGGCGTCTAGGGCAAACTTT 59.599 50.000 0.00 0.00 34.40 2.66
188 189 1.207329 CTAGGCGTCTAGGGCAAACTT 59.793 52.381 16.51 0.00 39.36 2.66
200 201 0.751452 CTTCCCTAACCCTAGGCGTC 59.249 60.000 2.05 0.00 43.25 5.19
201 202 0.690077 CCTTCCCTAACCCTAGGCGT 60.690 60.000 2.05 0.00 43.25 5.68
203 204 1.889174 TTCCTTCCCTAACCCTAGGC 58.111 55.000 2.05 0.00 43.25 3.93
205 206 3.516700 TCGTTTTCCTTCCCTAACCCTAG 59.483 47.826 0.00 0.00 0.00 3.02
207 208 2.305052 CTCGTTTTCCTTCCCTAACCCT 59.695 50.000 0.00 0.00 0.00 4.34
208 209 2.303890 TCTCGTTTTCCTTCCCTAACCC 59.696 50.000 0.00 0.00 0.00 4.11
209 210 3.690475 TCTCGTTTTCCTTCCCTAACC 57.310 47.619 0.00 0.00 0.00 2.85
210 211 4.891260 TCTTCTCGTTTTCCTTCCCTAAC 58.109 43.478 0.00 0.00 0.00 2.34
213 214 3.807561 GCTTCTTCTCGTTTTCCTTCCCT 60.808 47.826 0.00 0.00 0.00 4.20
214 215 2.484651 GCTTCTTCTCGTTTTCCTTCCC 59.515 50.000 0.00 0.00 0.00 3.97
215 216 2.484651 GGCTTCTTCTCGTTTTCCTTCC 59.515 50.000 0.00 0.00 0.00 3.46
216 217 2.157863 CGGCTTCTTCTCGTTTTCCTTC 59.842 50.000 0.00 0.00 0.00 3.46
217 218 2.143925 CGGCTTCTTCTCGTTTTCCTT 58.856 47.619 0.00 0.00 0.00 3.36
218 219 1.608283 CCGGCTTCTTCTCGTTTTCCT 60.608 52.381 0.00 0.00 0.00 3.36
221 222 0.395312 TCCCGGCTTCTTCTCGTTTT 59.605 50.000 0.00 0.00 0.00 2.43
222 223 0.395312 TTCCCGGCTTCTTCTCGTTT 59.605 50.000 0.00 0.00 0.00 3.60
223 224 0.613777 ATTCCCGGCTTCTTCTCGTT 59.386 50.000 0.00 0.00 0.00 3.85
224 225 0.613777 AATTCCCGGCTTCTTCTCGT 59.386 50.000 0.00 0.00 0.00 4.18
225 226 1.398390 CAAATTCCCGGCTTCTTCTCG 59.602 52.381 0.00 0.00 0.00 4.04
226 227 2.437413 ACAAATTCCCGGCTTCTTCTC 58.563 47.619 0.00 0.00 0.00 2.87
227 228 2.586648 ACAAATTCCCGGCTTCTTCT 57.413 45.000 0.00 0.00 0.00 2.85
229 230 3.756963 GACTTACAAATTCCCGGCTTCTT 59.243 43.478 0.00 0.00 0.00 2.52
230 231 3.009143 AGACTTACAAATTCCCGGCTTCT 59.991 43.478 0.00 0.00 0.00 2.85
232 233 3.434940 AGACTTACAAATTCCCGGCTT 57.565 42.857 0.00 0.00 0.00 4.35
234 235 6.316890 TGTTTATAGACTTACAAATTCCCGGC 59.683 38.462 0.00 0.00 0.00 6.13
235 236 7.852971 TGTTTATAGACTTACAAATTCCCGG 57.147 36.000 0.00 0.00 0.00 5.73
253 254 9.449719 ACTCTTCATTTCCGAAGTTATGTTTAT 57.550 29.630 0.00 0.00 42.53 1.40
254 255 8.842358 ACTCTTCATTTCCGAAGTTATGTTTA 57.158 30.769 0.00 0.00 42.53 2.01
255 256 7.745620 ACTCTTCATTTCCGAAGTTATGTTT 57.254 32.000 0.00 0.00 42.53 2.83
256 257 7.745620 AACTCTTCATTTCCGAAGTTATGTT 57.254 32.000 0.00 0.00 42.53 2.71
257 258 7.876068 TGTAACTCTTCATTTCCGAAGTTATGT 59.124 33.333 0.00 0.00 42.53 2.29
261 262 6.990349 TCTTGTAACTCTTCATTTCCGAAGTT 59.010 34.615 0.00 0.00 42.53 2.66
262 263 6.522054 TCTTGTAACTCTTCATTTCCGAAGT 58.478 36.000 0.00 0.00 42.53 3.01
263 264 7.421530 TTCTTGTAACTCTTCATTTCCGAAG 57.578 36.000 0.00 0.00 43.17 3.79
265 266 7.795482 TTTTCTTGTAACTCTTCATTTCCGA 57.205 32.000 0.00 0.00 0.00 4.55
343 344 9.898152 TCTTCACATTTAAAATTCCCTTTGTTT 57.102 25.926 0.00 0.00 0.00 2.83
344 345 9.898152 TTCTTCACATTTAAAATTCCCTTTGTT 57.102 25.926 0.00 0.00 0.00 2.83
345 346 9.325198 GTTCTTCACATTTAAAATTCCCTTTGT 57.675 29.630 0.00 0.00 0.00 2.83
346 347 9.546428 AGTTCTTCACATTTAAAATTCCCTTTG 57.454 29.630 0.00 0.00 0.00 2.77
347 348 9.546428 CAGTTCTTCACATTTAAAATTCCCTTT 57.454 29.630 0.00 0.00 0.00 3.11
348 349 8.923270 TCAGTTCTTCACATTTAAAATTCCCTT 58.077 29.630 0.00 0.00 0.00 3.95
349 350 8.477419 TCAGTTCTTCACATTTAAAATTCCCT 57.523 30.769 0.00 0.00 0.00 4.20
358 359 8.156820 TCCTCAAATCTCAGTTCTTCACATTTA 58.843 33.333 0.00 0.00 0.00 1.40
360 361 6.537355 TCCTCAAATCTCAGTTCTTCACATT 58.463 36.000 0.00 0.00 0.00 2.71
362 363 5.551305 TCCTCAAATCTCAGTTCTTCACA 57.449 39.130 0.00 0.00 0.00 3.58
363 364 6.867662 TTTCCTCAAATCTCAGTTCTTCAC 57.132 37.500 0.00 0.00 0.00 3.18
364 365 9.573166 TTTATTTCCTCAAATCTCAGTTCTTCA 57.427 29.630 0.00 0.00 33.95 3.02
367 368 9.525826 ACATTTATTTCCTCAAATCTCAGTTCT 57.474 29.630 0.00 0.00 33.95 3.01
432 433 8.800332 GGAAATGTGAAATTGGATAGCTATCAT 58.200 33.333 30.03 16.32 34.40 2.45
433 434 8.000709 AGGAAATGTGAAATTGGATAGCTATCA 58.999 33.333 30.03 14.84 34.40 2.15
434 435 8.401490 AGGAAATGTGAAATTGGATAGCTATC 57.599 34.615 23.23 23.23 0.00 2.08
435 436 9.866655 TTAGGAAATGTGAAATTGGATAGCTAT 57.133 29.630 5.76 5.76 0.00 2.97
437 438 8.593945 TTTAGGAAATGTGAAATTGGATAGCT 57.406 30.769 0.00 0.00 0.00 3.32
438 439 9.822185 ATTTTAGGAAATGTGAAATTGGATAGC 57.178 29.630 0.00 0.00 34.26 2.97
484 485 8.768397 GGGGAAATGAAAATACTTTTAGGGAAT 58.232 33.333 0.00 0.00 31.94 3.01
485 486 7.735321 TGGGGAAATGAAAATACTTTTAGGGAA 59.265 33.333 0.00 0.00 31.94 3.97
486 487 7.249715 TGGGGAAATGAAAATACTTTTAGGGA 58.750 34.615 0.00 0.00 31.94 4.20
487 488 7.489239 TGGGGAAATGAAAATACTTTTAGGG 57.511 36.000 0.00 0.00 31.94 3.53
494 495 9.942526 AGAATAGAATGGGGAAATGAAAATACT 57.057 29.630 0.00 0.00 0.00 2.12
497 498 9.050154 ACAAGAATAGAATGGGGAAATGAAAAT 57.950 29.630 0.00 0.00 0.00 1.82
499 500 8.434589 AACAAGAATAGAATGGGGAAATGAAA 57.565 30.769 0.00 0.00 0.00 2.69
501 502 6.607198 GGAACAAGAATAGAATGGGGAAATGA 59.393 38.462 0.00 0.00 0.00 2.57
502 503 6.608808 AGGAACAAGAATAGAATGGGGAAATG 59.391 38.462 0.00 0.00 0.00 2.32
503 504 6.745857 AGGAACAAGAATAGAATGGGGAAAT 58.254 36.000 0.00 0.00 0.00 2.17
504 505 6.152638 AGGAACAAGAATAGAATGGGGAAA 57.847 37.500 0.00 0.00 0.00 3.13
505 506 5.796502 AGGAACAAGAATAGAATGGGGAA 57.203 39.130 0.00 0.00 0.00 3.97
506 507 5.796502 AAGGAACAAGAATAGAATGGGGA 57.203 39.130 0.00 0.00 0.00 4.81
507 508 6.437162 TGAAAAGGAACAAGAATAGAATGGGG 59.563 38.462 0.00 0.00 0.00 4.96
508 509 7.466746 TGAAAAGGAACAAGAATAGAATGGG 57.533 36.000 0.00 0.00 0.00 4.00
510 511 9.971922 AAGTTGAAAAGGAACAAGAATAGAATG 57.028 29.630 0.00 0.00 0.00 2.67
517 518 8.878769 GCAAATAAAGTTGAAAAGGAACAAGAA 58.121 29.630 0.00 0.00 0.00 2.52
518 519 8.037758 TGCAAATAAAGTTGAAAAGGAACAAGA 58.962 29.630 0.00 0.00 0.00 3.02
519 520 8.116136 GTGCAAATAAAGTTGAAAAGGAACAAG 58.884 33.333 0.00 0.00 0.00 3.16
520 521 7.604164 TGTGCAAATAAAGTTGAAAAGGAACAA 59.396 29.630 0.00 0.00 0.00 2.83
521 522 7.064016 GTGTGCAAATAAAGTTGAAAAGGAACA 59.936 33.333 0.00 0.00 0.00 3.18
522 523 7.277760 AGTGTGCAAATAAAGTTGAAAAGGAAC 59.722 33.333 0.00 0.00 0.00 3.62
523 524 7.327214 AGTGTGCAAATAAAGTTGAAAAGGAA 58.673 30.769 0.00 0.00 0.00 3.36
524 525 6.872920 AGTGTGCAAATAAAGTTGAAAAGGA 58.127 32.000 0.00 0.00 0.00 3.36
525 526 7.538303 AAGTGTGCAAATAAAGTTGAAAAGG 57.462 32.000 0.00 0.00 0.00 3.11
526 527 8.268738 GCTAAGTGTGCAAATAAAGTTGAAAAG 58.731 33.333 0.00 0.00 0.00 2.27
527 528 7.978975 AGCTAAGTGTGCAAATAAAGTTGAAAA 59.021 29.630 0.00 0.00 0.00 2.29
528 529 7.488322 AGCTAAGTGTGCAAATAAAGTTGAAA 58.512 30.769 0.00 0.00 0.00 2.69
529 530 7.038154 AGCTAAGTGTGCAAATAAAGTTGAA 57.962 32.000 0.00 0.00 0.00 2.69
530 531 6.633500 AGCTAAGTGTGCAAATAAAGTTGA 57.367 33.333 0.00 0.00 0.00 3.18
531 532 6.519761 CGTAGCTAAGTGTGCAAATAAAGTTG 59.480 38.462 0.00 0.00 0.00 3.16
532 533 6.599437 CGTAGCTAAGTGTGCAAATAAAGTT 58.401 36.000 0.00 0.00 0.00 2.66
533 534 6.165659 CGTAGCTAAGTGTGCAAATAAAGT 57.834 37.500 0.00 0.00 0.00 2.66
556 557 0.319813 GAGGTGGTTTTGCACATGGC 60.320 55.000 0.00 0.00 45.13 4.40
557 558 1.331214 AGAGGTGGTTTTGCACATGG 58.669 50.000 0.00 0.00 0.00 3.66
559 560 2.151202 CGTAGAGGTGGTTTTGCACAT 58.849 47.619 0.00 0.00 0.00 3.21
561 562 0.872388 CCGTAGAGGTGGTTTTGCAC 59.128 55.000 0.00 0.00 34.51 4.57
562 563 3.315765 CCGTAGAGGTGGTTTTGCA 57.684 52.632 0.00 0.00 34.51 4.08
573 574 7.653767 AGAATTGTTTGAAGTTACCGTAGAG 57.346 36.000 0.00 0.00 0.00 2.43
574 575 8.981647 GTTAGAATTGTTTGAAGTTACCGTAGA 58.018 33.333 0.00 0.00 0.00 2.59
575 576 8.767085 TGTTAGAATTGTTTGAAGTTACCGTAG 58.233 33.333 0.00 0.00 0.00 3.51
576 577 8.659925 TGTTAGAATTGTTTGAAGTTACCGTA 57.340 30.769 0.00 0.00 0.00 4.02
578 579 9.458374 AAATGTTAGAATTGTTTGAAGTTACCG 57.542 29.630 0.00 0.00 0.00 4.02
583 584 9.480053 CCATCAAATGTTAGAATTGTTTGAAGT 57.520 29.630 3.37 0.00 40.75 3.01
584 585 9.695526 TCCATCAAATGTTAGAATTGTTTGAAG 57.304 29.630 3.37 0.00 40.75 3.02
642 643 3.173953 TGCATGGTCCTGATTCCTTTT 57.826 42.857 0.00 0.00 0.00 2.27
643 644 2.905415 TGCATGGTCCTGATTCCTTT 57.095 45.000 0.00 0.00 0.00 3.11
645 646 3.051581 ACTATGCATGGTCCTGATTCCT 58.948 45.455 10.30 0.00 0.00 3.36
647 648 4.454678 TCAACTATGCATGGTCCTGATTC 58.545 43.478 16.73 0.00 0.00 2.52
648 649 4.458397 CTCAACTATGCATGGTCCTGATT 58.542 43.478 16.73 0.00 0.00 2.57
650 651 2.171237 CCTCAACTATGCATGGTCCTGA 59.829 50.000 16.73 15.46 0.00 3.86
652 653 1.492176 CCCTCAACTATGCATGGTCCT 59.508 52.381 16.73 0.00 0.00 3.85
653 654 1.477558 CCCCTCAACTATGCATGGTCC 60.478 57.143 16.73 0.00 0.00 4.46
654 655 1.972872 CCCCTCAACTATGCATGGTC 58.027 55.000 16.73 0.00 0.00 4.02
655 656 0.106519 GCCCCTCAACTATGCATGGT 60.107 55.000 10.30 10.30 0.00 3.55
656 657 0.825010 GGCCCCTCAACTATGCATGG 60.825 60.000 10.16 9.41 0.00 3.66
657 658 0.106569 TGGCCCCTCAACTATGCATG 60.107 55.000 10.16 1.82 0.00 4.06
658 659 0.855598 ATGGCCCCTCAACTATGCAT 59.144 50.000 3.79 3.79 0.00 3.96
659 660 1.517238 TATGGCCCCTCAACTATGCA 58.483 50.000 0.00 0.00 0.00 3.96
660 661 2.158608 ACTTATGGCCCCTCAACTATGC 60.159 50.000 0.00 0.00 0.00 3.14
661 662 3.864789 ACTTATGGCCCCTCAACTATG 57.135 47.619 0.00 0.00 0.00 2.23
662 663 4.567857 AGTACTTATGGCCCCTCAACTAT 58.432 43.478 0.00 0.00 0.00 2.12
663 664 4.003584 AGTACTTATGGCCCCTCAACTA 57.996 45.455 0.00 0.00 0.00 2.24
665 666 3.646736 AAGTACTTATGGCCCCTCAAC 57.353 47.619 6.26 0.00 0.00 3.18
666 667 4.668138 AAAAGTACTTATGGCCCCTCAA 57.332 40.909 8.92 0.00 0.00 3.02
667 668 4.668138 AAAAAGTACTTATGGCCCCTCA 57.332 40.909 8.92 0.00 0.00 3.86
704 705 1.533731 CAACGCCACACCTATCGTTTT 59.466 47.619 0.00 0.00 42.32 2.43
705 706 1.153353 CAACGCCACACCTATCGTTT 58.847 50.000 0.00 0.00 42.32 3.60
706 707 0.319083 TCAACGCCACACCTATCGTT 59.681 50.000 0.00 0.00 44.62 3.85
707 708 0.319083 TTCAACGCCACACCTATCGT 59.681 50.000 0.00 0.00 36.67 3.73
722 3808 2.146342 GCTGCTACTCTGCTTGTTCAA 58.854 47.619 0.00 0.00 36.79 2.69
772 3861 3.372795 TCGCAGACGTTGGTTTTCT 57.627 47.368 0.00 0.00 41.18 2.52
786 3876 2.021722 GAGCAAAACAGTGGTCGCA 58.978 52.632 5.43 0.00 36.39 5.10
805 3895 1.621377 GAGGGAGCCTGGAGGTCTA 59.379 63.158 0.00 0.00 42.87 2.59
814 3904 3.406498 AGGTTATATACAGGAGGGAGCCT 59.594 47.826 0.00 0.00 39.37 4.58
815 3905 3.770388 GAGGTTATATACAGGAGGGAGCC 59.230 52.174 0.00 0.00 0.00 4.70
853 3958 2.771089 TGCTTGTGTTGATGAGAGGAC 58.229 47.619 0.00 0.00 0.00 3.85
919 4056 2.503356 CCTGGAGATTGGTAGCTGAAGT 59.497 50.000 0.00 0.00 0.00 3.01
1077 4233 0.872021 CGTAGTTCCATCGGCAGAGC 60.872 60.000 0.00 0.00 0.00 4.09
1086 4242 0.617820 ACCTGAGGGCGTAGTTCCAT 60.618 55.000 2.38 0.00 35.63 3.41
1234 4390 3.735181 GGTACATCACCGTCCTCAC 57.265 57.895 0.00 0.00 37.63 3.51
1289 4445 2.806009 GCCCCTCCTCAGCTAGCAG 61.806 68.421 18.83 9.54 0.00 4.24
1298 4473 3.151022 CGTCCTCAGCCCCTCCTC 61.151 72.222 0.00 0.00 0.00 3.71
1299 4474 4.787280 CCGTCCTCAGCCCCTCCT 62.787 72.222 0.00 0.00 0.00 3.69
1301 4476 3.775654 CACCGTCCTCAGCCCCTC 61.776 72.222 0.00 0.00 0.00 4.30
1302 4477 4.316823 TCACCGTCCTCAGCCCCT 62.317 66.667 0.00 0.00 0.00 4.79
1303 4478 4.083862 GTCACCGTCCTCAGCCCC 62.084 72.222 0.00 0.00 0.00 5.80
1304 4479 4.436998 CGTCACCGTCCTCAGCCC 62.437 72.222 0.00 0.00 0.00 5.19
1305 4480 2.338015 TACGTCACCGTCCTCAGCC 61.338 63.158 0.00 0.00 46.28 4.85
1306 4481 1.154073 GTACGTCACCGTCCTCAGC 60.154 63.158 0.00 0.00 46.28 4.26
1307 4482 1.505353 GGTACGTCACCGTCCTCAG 59.495 63.158 0.00 0.00 46.28 3.35
1308 4483 3.672293 GGTACGTCACCGTCCTCA 58.328 61.111 0.00 0.00 46.28 3.86
1316 4491 2.415625 CCTAGCAGTTGAGGTACGTCAC 60.416 54.545 17.44 12.46 0.00 3.67
1317 4492 1.816835 CCTAGCAGTTGAGGTACGTCA 59.183 52.381 14.05 14.05 0.00 4.35
1318 4493 1.469423 GCCTAGCAGTTGAGGTACGTC 60.469 57.143 8.63 8.63 35.08 4.34
1319 4494 0.531200 GCCTAGCAGTTGAGGTACGT 59.469 55.000 0.00 0.00 35.08 3.57
1320 4495 0.525668 CGCCTAGCAGTTGAGGTACG 60.526 60.000 0.00 0.00 35.08 3.67
1321 4496 0.531200 ACGCCTAGCAGTTGAGGTAC 59.469 55.000 0.00 0.00 35.08 3.34
1322 4497 0.530744 CACGCCTAGCAGTTGAGGTA 59.469 55.000 0.00 0.00 35.08 3.08
1323 4498 1.293498 CACGCCTAGCAGTTGAGGT 59.707 57.895 0.00 0.00 35.08 3.85
1324 4499 0.737715 GACACGCCTAGCAGTTGAGG 60.738 60.000 0.00 0.00 35.78 3.86
1325 4500 0.244994 AGACACGCCTAGCAGTTGAG 59.755 55.000 0.00 0.00 0.00 3.02
1326 4501 0.243907 GAGACACGCCTAGCAGTTGA 59.756 55.000 0.00 0.00 0.00 3.18
1327 4502 0.244994 AGAGACACGCCTAGCAGTTG 59.755 55.000 0.00 0.00 0.00 3.16
1328 4503 0.244994 CAGAGACACGCCTAGCAGTT 59.755 55.000 0.00 0.00 0.00 3.16
1329 4504 0.896019 ACAGAGACACGCCTAGCAGT 60.896 55.000 0.00 0.00 0.00 4.40
1330 4505 0.244994 AACAGAGACACGCCTAGCAG 59.755 55.000 0.00 0.00 0.00 4.24
1331 4506 0.679505 AAACAGAGACACGCCTAGCA 59.320 50.000 0.00 0.00 0.00 3.49
1332 4507 1.071605 CAAACAGAGACACGCCTAGC 58.928 55.000 0.00 0.00 0.00 3.42
1333 4508 1.071605 GCAAACAGAGACACGCCTAG 58.928 55.000 0.00 0.00 0.00 3.02
1334 4509 0.679505 AGCAAACAGAGACACGCCTA 59.320 50.000 0.00 0.00 0.00 3.93
1345 4520 3.737127 TGGTTGTTGCAGCAAACAG 57.263 47.368 27.56 0.00 40.67 3.16
1379 4554 1.794222 CGATTCAACGGGAAGCCAC 59.206 57.895 2.43 0.00 38.70 5.01
1391 4566 4.950475 TGGTATTTTACAATGGGCGATTCA 59.050 37.500 0.00 0.00 0.00 2.57
1397 4572 4.404073 TCATGGTGGTATTTTACAATGGGC 59.596 41.667 0.00 0.00 0.00 5.36
1483 4658 9.765795 CCTCGAGAATAATTAATAAAGTGACCT 57.234 33.333 15.71 0.00 0.00 3.85
1729 4904 8.865090 AGATTCAATATAATCTGAAGACGGACT 58.135 33.333 0.75 0.00 43.09 3.85
1798 4973 1.267121 GAGGAGGTAGTTGTCTGGCA 58.733 55.000 0.00 0.00 0.00 4.92
1952 5127 1.982395 TCTGGCCGTGTCTCCGATT 60.982 57.895 0.00 0.00 0.00 3.34
2202 5382 3.680786 GAAACCCTTGGCCGCCAC 61.681 66.667 13.00 0.00 30.78 5.01
2203 5383 4.986708 GGAAACCCTTGGCCGCCA 62.987 66.667 8.43 8.43 0.00 5.69
2256 5436 1.580942 GCGCCTGCTGATTTTGTGA 59.419 52.632 0.00 0.00 38.39 3.58



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.