Multiple sequence alignment - TraesCS2D01G532400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G532400 chr2D 100.000 3960 0 0 1 3960 617730227 617734186 0.000000e+00 7313.0
1 TraesCS2D01G532400 chr2D 92.208 3016 165 25 531 3510 617887162 617890143 0.000000e+00 4204.0
2 TraesCS2D01G532400 chr2D 90.560 2913 230 18 627 3517 617546407 617549296 0.000000e+00 3814.0
3 TraesCS2D01G532400 chr2D 89.145 2911 243 29 478 3322 617909986 617907083 0.000000e+00 3557.0
4 TraesCS2D01G532400 chr2D 90.564 2713 199 24 332 3009 617538501 617541191 0.000000e+00 3539.0
5 TraesCS2D01G532400 chr2D 89.418 2561 221 20 483 3009 617633645 617636189 0.000000e+00 3182.0
6 TraesCS2D01G532400 chr2D 82.574 505 62 6 483 974 617759953 617760444 4.730000e-114 422.0
7 TraesCS2D01G532400 chr2D 90.041 241 18 2 3594 3830 617549297 617549535 1.380000e-79 307.0
8 TraesCS2D01G532400 chr2D 88.757 169 18 1 1 168 131286712 131286544 5.190000e-49 206.0
9 TraesCS2D01G532400 chr2D 83.838 99 8 2 3671 3761 617906766 617906668 1.960000e-13 87.9
10 TraesCS2D01G532400 chr2A 89.960 2968 231 26 582 3513 748437450 748440386 0.000000e+00 3768.0
11 TraesCS2D01G532400 chr2A 91.386 2403 173 11 627 3009 746620353 746622741 0.000000e+00 3260.0
12 TraesCS2D01G532400 chr2A 88.574 2573 249 21 480 3031 748503762 748501214 0.000000e+00 3081.0
13 TraesCS2D01G532400 chr2A 90.211 2370 208 9 728 3076 748285196 748287562 0.000000e+00 3070.0
14 TraesCS2D01G532400 chr2A 88.803 2081 179 12 1468 3517 748400735 748402792 0.000000e+00 2503.0
15 TraesCS2D01G532400 chr2A 89.219 1920 161 18 556 2450 748203915 748205813 0.000000e+00 2357.0
16 TraesCS2D01G532400 chr2A 89.956 1145 90 9 2097 3219 748220973 748222114 0.000000e+00 1454.0
17 TraesCS2D01G532400 chr2A 87.017 1009 99 12 2311 3315 748453581 748452601 0.000000e+00 1109.0
18 TraesCS2D01G532400 chr2A 86.667 360 36 3 3594 3948 748402793 748403145 4.800000e-104 388.0
19 TraesCS2D01G532400 chr2A 83.832 167 17 5 3595 3752 747677524 747677359 2.470000e-32 150.0
20 TraesCS2D01G532400 chr2B 90.780 2397 193 13 634 3009 753792772 753795161 0.000000e+00 3177.0
21 TraesCS2D01G532400 chr2B 90.052 2322 188 14 1172 3471 753808140 753805840 0.000000e+00 2968.0
22 TraesCS2D01G532400 chr2B 83.240 179 19 3 3594 3761 753629242 753629064 1.910000e-33 154.0
23 TraesCS2D01G532400 chr2B 91.579 95 7 1 3505 3598 547862212 547862118 3.210000e-26 130.0
24 TraesCS2D01G532400 chr7B 86.667 555 53 9 3185 3737 7811067 7810532 2.630000e-166 595.0
25 TraesCS2D01G532400 chr6D 89.941 169 16 1 1 168 107534747 107534915 2.400000e-52 217.0
26 TraesCS2D01G532400 chr6D 95.294 85 3 1 3512 3595 429715278 429715362 2.480000e-27 134.0
27 TraesCS2D01G532400 chr7D 87.151 179 19 3 1 178 71621189 71621364 2.410000e-47 200.0
28 TraesCS2D01G532400 chr7D 87.574 169 18 3 6 171 68921027 68921195 4.040000e-45 193.0
29 TraesCS2D01G532400 chr5B 88.623 167 16 2 1 166 22030149 22029985 2.410000e-47 200.0
30 TraesCS2D01G532400 chr5B 88.462 104 9 3 3496 3597 711237982 711237880 5.370000e-24 122.0
31 TraesCS2D01G532400 chr3B 87.574 169 20 1 1 168 767955577 767955409 1.120000e-45 195.0
32 TraesCS2D01G532400 chr3B 86.982 169 21 1 1 168 768058941 768058773 5.220000e-44 189.0
33 TraesCS2D01G532400 chr3B 86.982 169 21 1 1 168 768154110 768153942 5.220000e-44 189.0
34 TraesCS2D01G532400 chr3B 91.579 95 7 1 3509 3602 485411931 485412025 3.210000e-26 130.0
35 TraesCS2D01G532400 chr3B 89.109 101 9 2 3504 3602 66572362 66572262 1.490000e-24 124.0
36 TraesCS2D01G532400 chr1D 87.135 171 21 1 1 170 433297470 433297300 4.040000e-45 193.0
37 TraesCS2D01G532400 chr1B 92.708 96 4 3 3504 3597 12307447 12307541 6.900000e-28 135.0
38 TraesCS2D01G532400 chr6B 92.391 92 6 1 3505 3595 610024719 610024810 3.210000e-26 130.0
39 TraesCS2D01G532400 chr4B 87.736 106 11 2 3508 3611 116875155 116875050 5.370000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G532400 chr2D 617730227 617734186 3959 False 7313.00 7313 100.0000 1 3960 1 chr2D.!!$F3 3959
1 TraesCS2D01G532400 chr2D 617887162 617890143 2981 False 4204.00 4204 92.2080 531 3510 1 chr2D.!!$F5 2979
2 TraesCS2D01G532400 chr2D 617538501 617541191 2690 False 3539.00 3539 90.5640 332 3009 1 chr2D.!!$F1 2677
3 TraesCS2D01G532400 chr2D 617633645 617636189 2544 False 3182.00 3182 89.4180 483 3009 1 chr2D.!!$F2 2526
4 TraesCS2D01G532400 chr2D 617546407 617549535 3128 False 2060.50 3814 90.3005 627 3830 2 chr2D.!!$F6 3203
5 TraesCS2D01G532400 chr2D 617906668 617909986 3318 True 1822.45 3557 86.4915 478 3761 2 chr2D.!!$R2 3283
6 TraesCS2D01G532400 chr2A 748437450 748440386 2936 False 3768.00 3768 89.9600 582 3513 1 chr2A.!!$F5 2931
7 TraesCS2D01G532400 chr2A 746620353 746622741 2388 False 3260.00 3260 91.3860 627 3009 1 chr2A.!!$F1 2382
8 TraesCS2D01G532400 chr2A 748501214 748503762 2548 True 3081.00 3081 88.5740 480 3031 1 chr2A.!!$R3 2551
9 TraesCS2D01G532400 chr2A 748285196 748287562 2366 False 3070.00 3070 90.2110 728 3076 1 chr2A.!!$F4 2348
10 TraesCS2D01G532400 chr2A 748203915 748205813 1898 False 2357.00 2357 89.2190 556 2450 1 chr2A.!!$F2 1894
11 TraesCS2D01G532400 chr2A 748220973 748222114 1141 False 1454.00 1454 89.9560 2097 3219 1 chr2A.!!$F3 1122
12 TraesCS2D01G532400 chr2A 748400735 748403145 2410 False 1445.50 2503 87.7350 1468 3948 2 chr2A.!!$F6 2480
13 TraesCS2D01G532400 chr2A 748452601 748453581 980 True 1109.00 1109 87.0170 2311 3315 1 chr2A.!!$R2 1004
14 TraesCS2D01G532400 chr2B 753792772 753795161 2389 False 3177.00 3177 90.7800 634 3009 1 chr2B.!!$F1 2375
15 TraesCS2D01G532400 chr2B 753805840 753808140 2300 True 2968.00 2968 90.0520 1172 3471 1 chr2B.!!$R3 2299
16 TraesCS2D01G532400 chr7B 7810532 7811067 535 True 595.00 595 86.6670 3185 3737 1 chr7B.!!$R1 552

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
292 293 0.031111 ATTCATCTCCCCACTCCCGA 60.031 55.000 0.0 0.0 0.00 5.14 F
347 348 0.526524 GATTCCAGACTCGTCAGCCG 60.527 60.000 0.0 0.0 38.13 5.52 F
515 537 1.153147 GGTTCCCCGAGAGATTGGC 60.153 63.158 0.0 0.0 0.00 4.52 F
2317 2387 0.606401 AAATGTCACTCAGCGGGGTG 60.606 55.000 11.0 11.0 35.06 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2275 2345 5.818887 TCCATGAAAAGACTCAATCCATCA 58.181 37.500 0.00 0.0 0.0 3.07 R
2317 2387 7.270047 TGTTGTACATAATAGTAGTGGGCTTC 58.730 38.462 0.00 0.0 0.0 3.86 R
2545 2615 6.604396 ACATTGCAGAAATCATGGTATTGAGA 59.396 34.615 0.00 0.0 0.0 3.27 R
3770 4118 0.034337 AATCACAACGGCGGTACAGT 59.966 50.000 13.24 0.0 0.0 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.590195 CCGCTGGCATGATCTAAAGC 59.410 55.000 0.00 0.00 0.00 3.51
20 21 0.234106 CGCTGGCATGATCTAAAGCG 59.766 55.000 0.00 12.06 46.09 4.68
21 22 0.040603 GCTGGCATGATCTAAAGCGC 60.041 55.000 0.00 0.00 0.00 5.92
22 23 0.234106 CTGGCATGATCTAAAGCGCG 59.766 55.000 0.00 0.00 0.00 6.86
23 24 1.082496 GGCATGATCTAAAGCGCGC 60.082 57.895 26.66 26.66 0.00 6.86
24 25 1.502163 GGCATGATCTAAAGCGCGCT 61.502 55.000 31.32 31.32 0.00 5.92
25 26 0.305922 GCATGATCTAAAGCGCGCTT 59.694 50.000 38.88 38.88 37.98 4.68
26 27 1.918974 GCATGATCTAAAGCGCGCTTG 60.919 52.381 43.43 31.83 36.26 4.01
27 28 0.940126 ATGATCTAAAGCGCGCTTGG 59.060 50.000 43.43 35.20 36.26 3.61
28 29 0.391130 TGATCTAAAGCGCGCTTGGT 60.391 50.000 43.43 31.59 36.26 3.67
29 30 0.301987 GATCTAAAGCGCGCTTGGTC 59.698 55.000 43.43 32.49 36.26 4.02
30 31 0.391130 ATCTAAAGCGCGCTTGGTCA 60.391 50.000 43.43 27.89 36.26 4.02
31 32 0.391130 TCTAAAGCGCGCTTGGTCAT 60.391 50.000 43.43 30.14 36.26 3.06
32 33 0.247814 CTAAAGCGCGCTTGGTCATG 60.248 55.000 43.43 25.08 36.26 3.07
33 34 0.672091 TAAAGCGCGCTTGGTCATGA 60.672 50.000 43.43 20.95 36.26 3.07
34 35 1.514678 AAAGCGCGCTTGGTCATGAA 61.515 50.000 43.43 0.00 36.26 2.57
35 36 1.514678 AAGCGCGCTTGGTCATGAAA 61.515 50.000 42.62 0.00 34.60 2.69
36 37 1.137404 GCGCGCTTGGTCATGAAAT 59.863 52.632 26.67 0.00 0.00 2.17
37 38 4.887029 AAGCGCGCTTGGTCATGAAATG 62.887 50.000 42.62 0.00 39.34 2.32
38 39 0.523968 CGCGCTTGGTCATGAAATGG 60.524 55.000 5.56 0.00 46.73 3.16
39 40 0.179129 GCGCTTGGTCATGAAATGGG 60.179 55.000 0.00 1.38 46.73 4.00
40 41 1.176527 CGCTTGGTCATGAAATGGGT 58.823 50.000 0.00 0.00 46.73 4.51
41 42 1.133025 CGCTTGGTCATGAAATGGGTC 59.867 52.381 0.00 0.00 46.73 4.46
42 43 1.133025 GCTTGGTCATGAAATGGGTCG 59.867 52.381 0.00 0.00 46.73 4.79
43 44 2.710377 CTTGGTCATGAAATGGGTCGA 58.290 47.619 0.00 0.00 46.73 4.20
44 45 3.282021 CTTGGTCATGAAATGGGTCGAT 58.718 45.455 0.00 0.00 46.73 3.59
45 46 2.917933 TGGTCATGAAATGGGTCGATC 58.082 47.619 0.00 0.00 46.73 3.69
46 47 2.222027 GGTCATGAAATGGGTCGATCC 58.778 52.381 8.12 8.12 46.73 3.36
47 48 1.867233 GTCATGAAATGGGTCGATCCG 59.133 52.381 10.84 0.00 46.73 4.18
48 49 1.484653 TCATGAAATGGGTCGATCCGT 59.515 47.619 10.84 6.99 46.73 4.69
49 50 2.093181 TCATGAAATGGGTCGATCCGTT 60.093 45.455 16.74 16.74 46.73 4.44
50 51 1.732941 TGAAATGGGTCGATCCGTTG 58.267 50.000 22.76 0.00 36.26 4.10
51 52 1.014352 GAAATGGGTCGATCCGTTGG 58.986 55.000 22.76 0.00 36.26 3.77
52 53 0.393808 AAATGGGTCGATCCGTTGGG 60.394 55.000 22.76 0.00 36.26 4.12
53 54 2.886730 AATGGGTCGATCCGTTGGGC 62.887 60.000 21.49 0.00 34.93 5.36
54 55 4.090588 GGGTCGATCCGTTGGGCA 62.091 66.667 0.00 0.00 37.00 5.36
55 56 2.818274 GGTCGATCCGTTGGGCAC 60.818 66.667 0.00 0.00 0.00 5.01
56 57 2.047655 GTCGATCCGTTGGGCACA 60.048 61.111 0.00 0.00 0.00 4.57
57 58 2.047655 TCGATCCGTTGGGCACAC 60.048 61.111 0.00 0.00 0.00 3.82
58 59 2.047274 CGATCCGTTGGGCACACT 60.047 61.111 0.00 0.00 0.00 3.55
59 60 2.390599 CGATCCGTTGGGCACACTG 61.391 63.158 0.00 0.00 0.00 3.66
60 61 2.672996 ATCCGTTGGGCACACTGC 60.673 61.111 0.00 0.00 44.08 4.40
69 70 2.904866 GCACACTGCCGACCCAAA 60.905 61.111 0.00 0.00 37.42 3.28
70 71 2.268076 GCACACTGCCGACCCAAAT 61.268 57.895 0.00 0.00 37.42 2.32
71 72 1.805428 GCACACTGCCGACCCAAATT 61.805 55.000 0.00 0.00 37.42 1.82
72 73 0.673437 CACACTGCCGACCCAAATTT 59.327 50.000 0.00 0.00 0.00 1.82
73 74 1.883275 CACACTGCCGACCCAAATTTA 59.117 47.619 0.00 0.00 0.00 1.40
74 75 2.294791 CACACTGCCGACCCAAATTTAA 59.705 45.455 0.00 0.00 0.00 1.52
75 76 2.959707 ACACTGCCGACCCAAATTTAAA 59.040 40.909 0.00 0.00 0.00 1.52
76 77 3.385111 ACACTGCCGACCCAAATTTAAAA 59.615 39.130 0.00 0.00 0.00 1.52
77 78 4.141914 ACACTGCCGACCCAAATTTAAAAA 60.142 37.500 0.00 0.00 0.00 1.94
78 79 4.447389 CACTGCCGACCCAAATTTAAAAAG 59.553 41.667 0.00 0.00 0.00 2.27
79 80 3.993736 CTGCCGACCCAAATTTAAAAAGG 59.006 43.478 0.00 0.00 0.00 3.11
80 81 3.244249 TGCCGACCCAAATTTAAAAAGGG 60.244 43.478 16.96 16.96 45.20 3.95
81 82 3.331150 CCGACCCAAATTTAAAAAGGGC 58.669 45.455 17.98 12.02 43.47 5.19
82 83 2.990514 CGACCCAAATTTAAAAAGGGCG 59.009 45.455 17.98 17.32 43.47 6.13
83 84 3.331150 GACCCAAATTTAAAAAGGGCGG 58.669 45.455 17.98 5.68 43.47 6.13
84 85 2.973406 ACCCAAATTTAAAAAGGGCGGA 59.027 40.909 17.98 0.00 43.47 5.54
85 86 3.244284 ACCCAAATTTAAAAAGGGCGGAC 60.244 43.478 17.98 0.00 43.47 4.79
86 87 3.244249 CCCAAATTTAAAAAGGGCGGACA 60.244 43.478 9.27 0.00 31.81 4.02
87 88 3.993736 CCAAATTTAAAAAGGGCGGACAG 59.006 43.478 0.00 0.00 0.00 3.51
120 121 4.041617 CCCAAACGGGCAAAAAGC 57.958 55.556 0.00 0.00 44.65 3.51
134 135 4.458708 GCAAAAAGCAAACAAAAACGTCA 58.541 34.783 0.00 0.00 44.79 4.35
135 136 5.085390 GCAAAAAGCAAACAAAAACGTCAT 58.915 33.333 0.00 0.00 44.79 3.06
136 137 5.224925 GCAAAAAGCAAACAAAAACGTCATC 59.775 36.000 0.00 0.00 44.79 2.92
137 138 6.533185 CAAAAAGCAAACAAAAACGTCATCT 58.467 32.000 0.00 0.00 0.00 2.90
138 139 5.701029 AAAGCAAACAAAAACGTCATCTG 57.299 34.783 0.00 0.00 0.00 2.90
139 140 4.370364 AGCAAACAAAAACGTCATCTGT 57.630 36.364 0.00 0.00 0.00 3.41
140 141 4.743493 AGCAAACAAAAACGTCATCTGTT 58.257 34.783 0.00 0.00 0.00 3.16
141 142 5.167845 AGCAAACAAAAACGTCATCTGTTT 58.832 33.333 10.46 10.46 40.01 2.83
143 144 5.784321 CAAACAAAAACGTCATCTGTTTGG 58.216 37.500 23.85 8.55 46.67 3.28
144 145 4.040445 ACAAAAACGTCATCTGTTTGGG 57.960 40.909 0.00 0.00 39.36 4.12
145 146 3.445805 ACAAAAACGTCATCTGTTTGGGT 59.554 39.130 0.00 0.00 39.36 4.51
146 147 3.982576 AAAACGTCATCTGTTTGGGTC 57.017 42.857 0.00 0.00 39.36 4.46
147 148 1.508632 AACGTCATCTGTTTGGGTCG 58.491 50.000 0.00 0.00 0.00 4.79
148 149 0.320421 ACGTCATCTGTTTGGGTCGG 60.320 55.000 0.00 0.00 0.00 4.79
149 150 1.635663 CGTCATCTGTTTGGGTCGGC 61.636 60.000 0.00 0.00 0.00 5.54
150 151 1.002624 TCATCTGTTTGGGTCGGCC 60.003 57.895 0.00 0.00 0.00 6.13
160 161 4.324991 GGTCGGCCCGTTGGAGTT 62.325 66.667 1.63 0.00 0.00 3.01
161 162 3.047877 GTCGGCCCGTTGGAGTTG 61.048 66.667 1.63 0.00 0.00 3.16
164 165 3.056328 GGCCCGTTGGAGTTGCTC 61.056 66.667 0.00 0.00 0.00 4.26
165 166 2.032681 GCCCGTTGGAGTTGCTCT 59.967 61.111 0.00 0.00 0.00 4.09
166 167 1.295423 GCCCGTTGGAGTTGCTCTA 59.705 57.895 0.00 0.00 0.00 2.43
167 168 0.321298 GCCCGTTGGAGTTGCTCTAA 60.321 55.000 0.00 0.00 0.00 2.10
168 169 1.679032 GCCCGTTGGAGTTGCTCTAAT 60.679 52.381 0.00 0.00 33.81 1.73
169 170 2.419574 GCCCGTTGGAGTTGCTCTAATA 60.420 50.000 0.00 0.00 33.81 0.98
170 171 3.458189 CCCGTTGGAGTTGCTCTAATAG 58.542 50.000 0.00 0.00 33.81 1.73
171 172 3.132289 CCCGTTGGAGTTGCTCTAATAGA 59.868 47.826 0.00 0.00 33.81 1.98
172 173 4.202264 CCCGTTGGAGTTGCTCTAATAGAT 60.202 45.833 0.00 0.00 33.81 1.98
173 174 4.985409 CCGTTGGAGTTGCTCTAATAGATC 59.015 45.833 0.00 0.00 33.81 2.75
174 175 5.221342 CCGTTGGAGTTGCTCTAATAGATCT 60.221 44.000 0.00 0.00 33.81 2.75
175 176 5.689514 CGTTGGAGTTGCTCTAATAGATCTG 59.310 44.000 5.18 0.00 33.81 2.90
176 177 5.798125 TGGAGTTGCTCTAATAGATCTGG 57.202 43.478 5.18 0.00 0.00 3.86
177 178 5.458595 TGGAGTTGCTCTAATAGATCTGGA 58.541 41.667 5.18 0.00 0.00 3.86
178 179 5.303078 TGGAGTTGCTCTAATAGATCTGGAC 59.697 44.000 5.18 0.00 0.00 4.02
179 180 5.279256 GGAGTTGCTCTAATAGATCTGGACC 60.279 48.000 5.18 0.00 0.00 4.46
180 181 5.463154 AGTTGCTCTAATAGATCTGGACCT 58.537 41.667 5.18 0.00 0.00 3.85
181 182 5.902431 AGTTGCTCTAATAGATCTGGACCTT 59.098 40.000 5.18 0.00 0.00 3.50
182 183 6.385467 AGTTGCTCTAATAGATCTGGACCTTT 59.615 38.462 5.18 0.00 0.00 3.11
183 184 6.814954 TGCTCTAATAGATCTGGACCTTTT 57.185 37.500 5.18 0.00 0.00 2.27
184 185 7.200434 TGCTCTAATAGATCTGGACCTTTTT 57.800 36.000 5.18 0.00 0.00 1.94
185 186 7.050377 TGCTCTAATAGATCTGGACCTTTTTG 58.950 38.462 5.18 0.00 0.00 2.44
186 187 7.051000 GCTCTAATAGATCTGGACCTTTTTGT 58.949 38.462 5.18 0.00 0.00 2.83
187 188 7.554476 GCTCTAATAGATCTGGACCTTTTTGTT 59.446 37.037 5.18 0.00 0.00 2.83
188 189 9.454859 CTCTAATAGATCTGGACCTTTTTGTTT 57.545 33.333 5.18 0.00 0.00 2.83
189 190 9.807921 TCTAATAGATCTGGACCTTTTTGTTTT 57.192 29.630 5.18 0.00 0.00 2.43
218 219 9.791801 TTATATAAAGCTTGCCATACTGAATCA 57.208 29.630 0.00 0.00 0.00 2.57
219 220 8.696043 ATATAAAGCTTGCCATACTGAATCAA 57.304 30.769 0.00 0.00 0.00 2.57
220 221 4.978083 AAGCTTGCCATACTGAATCAAG 57.022 40.909 0.00 0.00 37.70 3.02
221 222 4.226427 AGCTTGCCATACTGAATCAAGA 57.774 40.909 4.67 0.00 37.03 3.02
222 223 4.592942 AGCTTGCCATACTGAATCAAGAA 58.407 39.130 4.67 0.00 37.03 2.52
223 224 4.639310 AGCTTGCCATACTGAATCAAGAAG 59.361 41.667 4.67 0.00 37.03 2.85
224 225 4.397417 GCTTGCCATACTGAATCAAGAAGT 59.603 41.667 4.67 0.00 37.03 3.01
225 226 5.105997 GCTTGCCATACTGAATCAAGAAGTT 60.106 40.000 4.67 0.00 37.03 2.66
226 227 6.500684 TTGCCATACTGAATCAAGAAGTTC 57.499 37.500 0.00 0.00 0.00 3.01
227 228 4.943705 TGCCATACTGAATCAAGAAGTTCC 59.056 41.667 0.00 0.00 0.00 3.62
228 229 5.189180 GCCATACTGAATCAAGAAGTTCCT 58.811 41.667 0.00 0.00 0.00 3.36
229 230 5.065731 GCCATACTGAATCAAGAAGTTCCTG 59.934 44.000 0.00 0.00 0.00 3.86
230 231 6.176183 CCATACTGAATCAAGAAGTTCCTGT 58.824 40.000 0.00 0.00 0.00 4.00
231 232 6.314896 CCATACTGAATCAAGAAGTTCCTGTC 59.685 42.308 0.00 0.00 0.00 3.51
232 233 5.559148 ACTGAATCAAGAAGTTCCTGTCT 57.441 39.130 0.00 0.00 0.00 3.41
233 234 6.672266 ACTGAATCAAGAAGTTCCTGTCTA 57.328 37.500 0.00 0.00 0.00 2.59
234 235 6.459923 ACTGAATCAAGAAGTTCCTGTCTAC 58.540 40.000 0.00 0.00 0.00 2.59
235 236 6.268847 ACTGAATCAAGAAGTTCCTGTCTACT 59.731 38.462 0.00 0.00 0.00 2.57
236 237 6.459066 TGAATCAAGAAGTTCCTGTCTACTG 58.541 40.000 0.00 0.00 0.00 2.74
237 238 6.042093 TGAATCAAGAAGTTCCTGTCTACTGT 59.958 38.462 0.00 0.00 0.00 3.55
238 239 5.455056 TCAAGAAGTTCCTGTCTACTGTC 57.545 43.478 0.00 0.00 0.00 3.51
239 240 5.141182 TCAAGAAGTTCCTGTCTACTGTCT 58.859 41.667 0.00 0.00 0.00 3.41
240 241 6.304624 TCAAGAAGTTCCTGTCTACTGTCTA 58.695 40.000 0.00 0.00 0.00 2.59
241 242 6.207025 TCAAGAAGTTCCTGTCTACTGTCTAC 59.793 42.308 0.00 0.00 0.00 2.59
242 243 5.632118 AGAAGTTCCTGTCTACTGTCTACA 58.368 41.667 0.00 0.00 0.00 2.74
257 258 6.474140 CTGTCTACAGTCTAGACTAGAGGA 57.526 45.833 24.75 16.41 43.15 3.71
258 259 6.870895 TGTCTACAGTCTAGACTAGAGGAA 57.129 41.667 24.75 12.84 43.15 3.36
259 260 6.880484 TGTCTACAGTCTAGACTAGAGGAAG 58.120 44.000 24.75 13.06 43.15 3.46
260 261 6.126997 TGTCTACAGTCTAGACTAGAGGAAGG 60.127 46.154 24.75 12.36 43.15 3.46
261 262 6.098695 GTCTACAGTCTAGACTAGAGGAAGGA 59.901 46.154 24.75 6.96 40.20 3.36
262 263 5.987019 ACAGTCTAGACTAGAGGAAGGAT 57.013 43.478 24.75 0.00 40.20 3.24
263 264 5.937111 ACAGTCTAGACTAGAGGAAGGATC 58.063 45.833 24.75 0.00 40.20 3.36
264 265 5.163131 ACAGTCTAGACTAGAGGAAGGATCC 60.163 48.000 24.75 2.48 42.27 3.36
265 266 4.979039 AGTCTAGACTAGAGGAAGGATCCA 59.021 45.833 24.04 0.00 43.53 3.41
266 267 5.433712 AGTCTAGACTAGAGGAAGGATCCAA 59.566 44.000 24.04 0.00 43.53 3.53
267 268 6.636336 AGTCTAGACTAGAGGAAGGATCCAAC 60.636 46.154 24.04 7.09 43.53 3.77
268 269 9.742883 AGTCTAGACTAGAGGAAGGATCCAACG 62.743 48.148 24.04 0.00 43.53 4.10
272 273 4.225497 GGAAGGATCCAACGGCAG 57.775 61.111 15.82 0.00 45.79 4.85
273 274 1.602237 GGAAGGATCCAACGGCAGA 59.398 57.895 15.82 0.00 45.79 4.26
274 275 0.181350 GGAAGGATCCAACGGCAGAT 59.819 55.000 15.82 0.00 45.79 2.90
275 276 1.408822 GGAAGGATCCAACGGCAGATT 60.409 52.381 15.82 0.00 45.79 2.40
276 277 1.943340 GAAGGATCCAACGGCAGATTC 59.057 52.381 15.82 1.53 0.00 2.52
277 278 0.911769 AGGATCCAACGGCAGATTCA 59.088 50.000 15.82 0.00 0.00 2.57
278 279 1.492176 AGGATCCAACGGCAGATTCAT 59.508 47.619 15.82 0.00 0.00 2.57
279 280 1.876156 GGATCCAACGGCAGATTCATC 59.124 52.381 6.95 0.00 0.00 2.92
280 281 2.486191 GGATCCAACGGCAGATTCATCT 60.486 50.000 6.95 0.00 37.72 2.90
281 282 2.315925 TCCAACGGCAGATTCATCTC 57.684 50.000 0.00 0.00 34.22 2.75
282 283 1.134401 TCCAACGGCAGATTCATCTCC 60.134 52.381 0.00 0.00 34.22 3.71
283 284 1.303309 CAACGGCAGATTCATCTCCC 58.697 55.000 0.00 0.00 34.22 4.30
284 285 0.181350 AACGGCAGATTCATCTCCCC 59.819 55.000 0.00 0.00 30.64 4.81
285 286 0.982852 ACGGCAGATTCATCTCCCCA 60.983 55.000 0.00 0.00 30.64 4.96
286 287 0.533755 CGGCAGATTCATCTCCCCAC 60.534 60.000 0.00 0.00 30.64 4.61
287 288 0.842635 GGCAGATTCATCTCCCCACT 59.157 55.000 0.00 0.00 34.22 4.00
288 289 1.202746 GGCAGATTCATCTCCCCACTC 60.203 57.143 0.00 0.00 34.22 3.51
289 290 1.202746 GCAGATTCATCTCCCCACTCC 60.203 57.143 0.00 0.00 34.22 3.85
290 291 1.419387 CAGATTCATCTCCCCACTCCC 59.581 57.143 0.00 0.00 34.22 4.30
291 292 0.394565 GATTCATCTCCCCACTCCCG 59.605 60.000 0.00 0.00 0.00 5.14
292 293 0.031111 ATTCATCTCCCCACTCCCGA 60.031 55.000 0.00 0.00 0.00 5.14
293 294 0.687757 TTCATCTCCCCACTCCCGAG 60.688 60.000 0.00 0.00 0.00 4.63
294 295 2.444895 ATCTCCCCACTCCCGAGC 60.445 66.667 0.00 0.00 0.00 5.03
295 296 3.015332 ATCTCCCCACTCCCGAGCT 62.015 63.158 0.00 0.00 0.00 4.09
296 297 2.937959 ATCTCCCCACTCCCGAGCTC 62.938 65.000 2.73 2.73 0.00 4.09
297 298 4.779733 TCCCCACTCCCGAGCTCC 62.780 72.222 8.47 0.00 0.00 4.70
300 301 3.522731 CCACTCCCGAGCTCCGAG 61.523 72.222 19.24 19.24 41.76 4.63
301 302 2.752238 CACTCCCGAGCTCCGAGT 60.752 66.667 20.32 20.32 41.76 4.18
302 303 2.752238 ACTCCCGAGCTCCGAGTG 60.752 66.667 23.62 10.38 41.76 3.51
303 304 3.522731 CTCCCGAGCTCCGAGTGG 61.523 72.222 8.47 2.60 41.76 4.00
307 308 4.803426 CGAGCTCCGAGTGGCCAC 62.803 72.222 29.22 29.22 41.76 5.01
308 309 4.459089 GAGCTCCGAGTGGCCACC 62.459 72.222 32.29 21.53 34.14 4.61
314 315 3.775654 CGAGTGGCCACCCCTCTC 61.776 72.222 32.29 20.84 46.20 3.20
315 316 3.403558 GAGTGGCCACCCCTCTCC 61.404 72.222 32.29 4.74 44.72 3.71
316 317 4.270153 AGTGGCCACCCCTCTCCA 62.270 66.667 32.29 0.00 31.94 3.86
317 318 3.721706 GTGGCCACCCCTCTCCAG 61.722 72.222 26.31 0.00 0.00 3.86
318 319 4.270153 TGGCCACCCCTCTCCAGT 62.270 66.667 0.00 0.00 0.00 4.00
319 320 3.403558 GGCCACCCCTCTCCAGTC 61.404 72.222 0.00 0.00 0.00 3.51
320 321 2.607750 GCCACCCCTCTCCAGTCA 60.608 66.667 0.00 0.00 0.00 3.41
321 322 2.960688 GCCACCCCTCTCCAGTCAC 61.961 68.421 0.00 0.00 0.00 3.67
322 323 2.650116 CCACCCCTCTCCAGTCACG 61.650 68.421 0.00 0.00 0.00 4.35
323 324 1.606601 CACCCCTCTCCAGTCACGA 60.607 63.158 0.00 0.00 0.00 4.35
324 325 0.972983 CACCCCTCTCCAGTCACGAT 60.973 60.000 0.00 0.00 0.00 3.73
325 326 0.684805 ACCCCTCTCCAGTCACGATC 60.685 60.000 0.00 0.00 0.00 3.69
326 327 1.395826 CCCCTCTCCAGTCACGATCC 61.396 65.000 0.00 0.00 0.00 3.36
327 328 0.684479 CCCTCTCCAGTCACGATCCA 60.684 60.000 0.00 0.00 0.00 3.41
328 329 0.743688 CCTCTCCAGTCACGATCCAG 59.256 60.000 0.00 0.00 0.00 3.86
329 330 1.683319 CCTCTCCAGTCACGATCCAGA 60.683 57.143 0.00 0.00 0.00 3.86
330 331 2.305928 CTCTCCAGTCACGATCCAGAT 58.694 52.381 0.00 0.00 0.00 2.90
331 332 2.692557 CTCTCCAGTCACGATCCAGATT 59.307 50.000 0.00 0.00 0.00 2.40
332 333 2.690497 TCTCCAGTCACGATCCAGATTC 59.310 50.000 0.00 0.00 0.00 2.52
333 334 1.757118 TCCAGTCACGATCCAGATTCC 59.243 52.381 0.00 0.00 0.00 3.01
334 335 1.482182 CCAGTCACGATCCAGATTCCA 59.518 52.381 0.00 0.00 0.00 3.53
335 336 2.482664 CCAGTCACGATCCAGATTCCAG 60.483 54.545 0.00 0.00 0.00 3.86
336 337 2.428530 CAGTCACGATCCAGATTCCAGA 59.571 50.000 0.00 0.00 0.00 3.86
337 338 2.428890 AGTCACGATCCAGATTCCAGAC 59.571 50.000 0.00 0.00 0.00 3.51
338 339 2.428890 GTCACGATCCAGATTCCAGACT 59.571 50.000 0.00 0.00 0.00 3.24
339 340 2.690497 TCACGATCCAGATTCCAGACTC 59.310 50.000 0.00 0.00 0.00 3.36
340 341 1.678627 ACGATCCAGATTCCAGACTCG 59.321 52.381 0.00 0.00 0.00 4.18
341 342 1.678627 CGATCCAGATTCCAGACTCGT 59.321 52.381 0.00 0.00 0.00 4.18
342 343 2.287308 CGATCCAGATTCCAGACTCGTC 60.287 54.545 0.00 0.00 0.00 4.20
343 344 2.215942 TCCAGATTCCAGACTCGTCA 57.784 50.000 0.00 0.00 0.00 4.35
344 345 2.095461 TCCAGATTCCAGACTCGTCAG 58.905 52.381 0.00 0.00 0.00 3.51
345 346 1.470632 CCAGATTCCAGACTCGTCAGC 60.471 57.143 0.00 0.00 0.00 4.26
346 347 0.820871 AGATTCCAGACTCGTCAGCC 59.179 55.000 0.00 0.00 0.00 4.85
347 348 0.526524 GATTCCAGACTCGTCAGCCG 60.527 60.000 0.00 0.00 38.13 5.52
348 349 2.564553 ATTCCAGACTCGTCAGCCGC 62.565 60.000 0.00 0.00 36.19 6.53
349 350 4.803426 CCAGACTCGTCAGCCGCC 62.803 72.222 0.00 0.00 36.19 6.13
389 390 4.087892 CAGGCCCACTGGTCCTCG 62.088 72.222 0.00 0.00 43.70 4.63
390 391 4.640690 AGGCCCACTGGTCCTCGT 62.641 66.667 0.00 0.00 36.69 4.18
391 392 4.083862 GGCCCACTGGTCCTCGTC 62.084 72.222 0.00 0.00 0.00 4.20
392 393 4.436998 GCCCACTGGTCCTCGTCG 62.437 72.222 0.00 0.00 0.00 5.12
424 429 2.358737 CTGTTCCCGCGCTTTCCT 60.359 61.111 5.56 0.00 0.00 3.36
455 460 3.855853 GCTCGGGGCCTCCTCTTC 61.856 72.222 0.84 0.00 34.27 2.87
458 463 3.391382 CGGGGCCTCCTCTTCGTT 61.391 66.667 0.84 0.00 0.00 3.85
461 466 2.815647 GGCCTCCTCTTCGTTGCG 60.816 66.667 0.00 0.00 0.00 4.85
463 468 2.657237 CCTCCTCTTCGTTGCGGT 59.343 61.111 0.00 0.00 0.00 5.68
471 476 1.498865 CTTCGTTGCGGTTGCTGAGT 61.499 55.000 0.00 0.00 43.34 3.41
475 480 4.908687 TGCGGTTGCTGAGTGCGT 62.909 61.111 0.00 0.00 46.63 5.24
515 537 1.153147 GGTTCCCCGAGAGATTGGC 60.153 63.158 0.00 0.00 0.00 4.52
549 571 2.178521 CGAGCGTCGCAGGTTACT 59.821 61.111 21.09 0.00 31.14 2.24
607 643 3.071206 TGTCGGCCTCTCCAGAGC 61.071 66.667 0.00 0.00 40.75 4.09
608 644 3.844090 GTCGGCCTCTCCAGAGCC 61.844 72.222 0.00 3.07 40.75 4.70
609 645 4.382541 TCGGCCTCTCCAGAGCCA 62.383 66.667 0.00 3.28 40.75 4.75
661 698 2.045926 GGAGACGGCCAGCAATGT 60.046 61.111 2.24 0.00 0.00 2.71
1107 1156 3.779183 TCATCTCCTTCAGCAATCTCCTT 59.221 43.478 0.00 0.00 0.00 3.36
2008 2057 5.166398 CCAAGGAATTGATTTCTGAAGCAC 58.834 41.667 0.00 0.00 34.56 4.40
2317 2387 0.606401 AAATGTCACTCAGCGGGGTG 60.606 55.000 11.00 11.00 35.06 4.61
2545 2615 6.873605 TGAACGTGAAGATTGATGTCATAACT 59.126 34.615 0.00 0.00 0.00 2.24
2632 2703 5.546110 TGCTACTATATCAGCCATTGGGTTA 59.454 40.000 4.22 0.00 36.95 2.85
2647 2718 2.706723 TGGGTTAGTGCCTTCTGTTGTA 59.293 45.455 0.00 0.00 0.00 2.41
2655 2726 5.621193 AGTGCCTTCTGTTGTAACTTACAT 58.379 37.500 2.41 0.00 38.68 2.29
2687 2758 8.188139 TGATAACGAATTTCATTAAAGAAGGGC 58.812 33.333 0.00 0.00 0.00 5.19
2692 2763 6.183360 CGAATTTCATTAAAGAAGGGCTGCTA 60.183 38.462 0.00 0.00 0.00 3.49
2734 2805 1.583556 TAGCAATGGAGAAGGCTGGA 58.416 50.000 0.00 0.00 37.17 3.86
2753 2824 2.508526 GATGTGCTCCAAACTCCAGTT 58.491 47.619 0.00 0.00 40.50 3.16
2801 2872 1.953686 TGGAAAAAGGTGCAGCTGTAC 59.046 47.619 24.98 24.98 0.00 2.90
2825 2896 3.443681 GGCTGCAACTTATCTGGCTAAAA 59.556 43.478 0.50 0.00 0.00 1.52
2897 2968 3.177228 TCTCTCTTCTCAAGGAAAGGGG 58.823 50.000 0.00 0.00 33.07 4.79
2903 2974 5.101529 TCTTCTCAAGGAAAGGGGAACTAT 58.898 41.667 0.00 0.00 33.07 2.12
3042 3115 0.680921 ACAGAATGACATTGCCCCCG 60.681 55.000 5.14 0.00 39.69 5.73
3160 3262 7.690454 TGAGGATCATATGAGTTTCCCTTTA 57.310 36.000 16.85 7.16 42.56 1.85
3280 3392 1.447643 CCTGCCTCTGGGAATACCG 59.552 63.158 0.00 0.00 44.64 4.02
3288 3400 1.134907 TCTGGGAATACCGAAACTCGC 60.135 52.381 0.00 0.00 44.64 5.03
3362 3480 5.445939 GGAGTGCAACACAAACACGATATAG 60.446 44.000 0.00 0.00 41.43 1.31
3409 3734 7.877097 GTGATATCTTTCAGTAATGCCTCTCAT 59.123 37.037 3.98 0.00 36.87 2.90
3426 3751 6.763610 GCCTCTCATAACAGTAGTGCTATTTT 59.236 38.462 0.00 0.00 0.00 1.82
3463 3796 4.330074 AGTGTTAAGTGCGCTGTATTCATC 59.670 41.667 9.73 0.00 0.00 2.92
3483 3816 1.610624 CGGGTGCAGACTGGTAAACAT 60.611 52.381 4.26 0.00 0.00 2.71
3517 3851 6.811665 TGTGTTGTCATCTAAAATCTACTCCG 59.188 38.462 0.00 0.00 0.00 4.63
3521 3855 5.213675 GTCATCTAAAATCTACTCCGTCCG 58.786 45.833 0.00 0.00 0.00 4.79
3531 3865 0.750850 ACTCCGTCCGTCCCATAATG 59.249 55.000 0.00 0.00 0.00 1.90
3533 3867 1.958579 CTCCGTCCGTCCCATAATGTA 59.041 52.381 0.00 0.00 0.00 2.29
3534 3868 2.363038 CTCCGTCCGTCCCATAATGTAA 59.637 50.000 0.00 0.00 0.00 2.41
3537 3871 3.006537 CCGTCCGTCCCATAATGTAAGAT 59.993 47.826 0.00 0.00 0.00 2.40
3606 3941 2.820037 GGAGTAGTTGCCAGCGCC 60.820 66.667 2.29 0.00 0.00 6.53
3623 3958 1.128692 CGCCAGTGCACTTTAGTTAGC 59.871 52.381 18.94 10.31 37.32 3.09
3638 3973 9.155975 ACTTTAGTTAGCAATCTGATGTTACTG 57.844 33.333 0.00 0.00 0.00 2.74
3641 3976 5.939883 AGTTAGCAATCTGATGTTACTGCAA 59.060 36.000 12.32 4.07 32.21 4.08
3770 4118 3.713003 TCTCTGCTCCAGGATCAGTTTA 58.287 45.455 18.11 4.52 29.28 2.01
3771 4119 3.449018 TCTCTGCTCCAGGATCAGTTTAC 59.551 47.826 18.11 0.00 29.28 2.01
3785 4133 1.069049 AGTTTACTGTACCGCCGTTGT 59.931 47.619 0.00 0.00 0.00 3.32
3826 4174 2.708216 TACCATGGTGCATTCGATGT 57.292 45.000 28.17 0.00 0.00 3.06
3842 4190 4.646960 TCGATGTCGTTGTGCAATTATTG 58.353 39.130 0.00 0.00 40.80 1.90
3848 4196 5.457148 TGTCGTTGTGCAATTATTGTGAAAC 59.543 36.000 6.81 7.50 37.35 2.78
3853 4201 6.841443 TGTGCAATTATTGTGAAACCAAAG 57.159 33.333 6.81 0.00 34.36 2.77
3866 4214 8.300495 TGTGAAACCAAAGTTTAGACAAAAAC 57.700 30.769 0.00 0.00 46.25 2.43
3875 4223 6.759497 AGTTTAGACAAAAACTTCTGCAGT 57.241 33.333 14.67 0.00 45.20 4.40
3881 4229 3.629398 ACAAAAACTTCTGCAGTCTGGAG 59.371 43.478 14.88 14.88 37.15 3.86
3888 4236 1.075536 TCTGCAGTCTGGAGGTGACTA 59.924 52.381 20.01 0.00 44.43 2.59
3889 4237 1.203523 CTGCAGTCTGGAGGTGACTAC 59.796 57.143 13.33 0.00 44.43 2.73
3890 4238 0.533032 GCAGTCTGGAGGTGACTACC 59.467 60.000 1.14 0.00 42.46 3.18
3940 4288 1.360192 GTGCTGCAACTGGTGAACC 59.640 57.895 2.77 0.00 0.00 3.62
3941 4289 1.827789 TGCTGCAACTGGTGAACCC 60.828 57.895 0.00 0.00 34.29 4.11
3950 4298 3.798794 TGGTGAACCCAGAAGTGTG 57.201 52.632 0.00 0.00 38.72 3.82
3951 4299 0.182537 TGGTGAACCCAGAAGTGTGG 59.817 55.000 0.00 0.00 38.72 4.17
3952 4300 0.472471 GGTGAACCCAGAAGTGTGGA 59.528 55.000 0.00 0.00 40.44 4.02
3953 4301 1.133915 GGTGAACCCAGAAGTGTGGAA 60.134 52.381 0.00 0.00 40.44 3.53
3954 4302 2.650322 GTGAACCCAGAAGTGTGGAAA 58.350 47.619 0.00 0.00 40.44 3.13
3955 4303 3.222603 GTGAACCCAGAAGTGTGGAAAT 58.777 45.455 0.00 0.00 40.44 2.17
3956 4304 3.636764 GTGAACCCAGAAGTGTGGAAATT 59.363 43.478 0.00 0.00 40.44 1.82
3957 4305 4.099419 GTGAACCCAGAAGTGTGGAAATTT 59.901 41.667 0.00 0.00 40.44 1.82
3958 4306 4.714308 TGAACCCAGAAGTGTGGAAATTTT 59.286 37.500 0.00 0.00 40.44 1.82
3959 4307 4.937201 ACCCAGAAGTGTGGAAATTTTC 57.063 40.909 0.24 0.24 40.44 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.590195 GCTTTAGATCATGCCAGCGG 59.410 55.000 0.00 0.00 0.00 5.52
2 3 0.040603 GCGCTTTAGATCATGCCAGC 60.041 55.000 0.00 0.00 0.00 4.85
3 4 0.234106 CGCGCTTTAGATCATGCCAG 59.766 55.000 5.56 0.00 0.00 4.85
4 5 1.775039 GCGCGCTTTAGATCATGCCA 61.775 55.000 26.67 0.00 0.00 4.92
5 6 1.082496 GCGCGCTTTAGATCATGCC 60.082 57.895 26.67 0.00 0.00 4.40
6 7 0.305922 AAGCGCGCTTTAGATCATGC 59.694 50.000 38.88 1.26 31.29 4.06
7 8 1.333524 CCAAGCGCGCTTTAGATCATG 60.334 52.381 41.48 27.94 33.42 3.07
8 9 0.940126 CCAAGCGCGCTTTAGATCAT 59.060 50.000 41.48 18.23 33.42 2.45
9 10 0.391130 ACCAAGCGCGCTTTAGATCA 60.391 50.000 41.48 0.00 33.42 2.92
10 11 0.301987 GACCAAGCGCGCTTTAGATC 59.698 55.000 41.48 29.38 33.42 2.75
11 12 0.391130 TGACCAAGCGCGCTTTAGAT 60.391 50.000 41.48 26.52 33.42 1.98
12 13 0.391130 ATGACCAAGCGCGCTTTAGA 60.391 50.000 41.48 25.53 33.42 2.10
15 16 1.514678 TTCATGACCAAGCGCGCTTT 61.515 50.000 41.48 29.60 33.42 3.51
17 18 1.308069 ATTTCATGACCAAGCGCGCT 61.308 50.000 31.32 31.32 0.00 5.92
18 19 1.135699 CATTTCATGACCAAGCGCGC 61.136 55.000 26.66 26.66 0.00 6.86
19 20 0.523968 CCATTTCATGACCAAGCGCG 60.524 55.000 0.00 0.00 0.00 6.86
20 21 0.179129 CCCATTTCATGACCAAGCGC 60.179 55.000 0.00 0.00 0.00 5.92
21 22 1.133025 GACCCATTTCATGACCAAGCG 59.867 52.381 0.00 0.00 0.00 4.68
22 23 1.133025 CGACCCATTTCATGACCAAGC 59.867 52.381 0.00 0.00 0.00 4.01
23 24 2.710377 TCGACCCATTTCATGACCAAG 58.290 47.619 0.00 0.00 0.00 3.61
24 25 2.869101 TCGACCCATTTCATGACCAA 57.131 45.000 0.00 0.00 0.00 3.67
25 26 2.421388 GGATCGACCCATTTCATGACCA 60.421 50.000 0.00 0.00 0.00 4.02
26 27 2.222027 GGATCGACCCATTTCATGACC 58.778 52.381 0.00 0.00 0.00 4.02
27 28 1.867233 CGGATCGACCCATTTCATGAC 59.133 52.381 0.00 0.00 34.64 3.06
28 29 1.484653 ACGGATCGACCCATTTCATGA 59.515 47.619 0.00 0.00 34.64 3.07
29 30 1.953559 ACGGATCGACCCATTTCATG 58.046 50.000 0.00 0.00 34.64 3.07
30 31 2.288666 CAACGGATCGACCCATTTCAT 58.711 47.619 0.00 0.00 34.64 2.57
31 32 1.677518 CCAACGGATCGACCCATTTCA 60.678 52.381 0.00 0.00 34.64 2.69
32 33 1.014352 CCAACGGATCGACCCATTTC 58.986 55.000 0.00 0.00 34.64 2.17
33 34 0.393808 CCCAACGGATCGACCCATTT 60.394 55.000 0.00 0.00 34.64 2.32
34 35 1.223487 CCCAACGGATCGACCCATT 59.777 57.895 0.00 0.00 34.64 3.16
35 36 2.908015 CCCAACGGATCGACCCAT 59.092 61.111 0.00 0.00 34.64 4.00
36 37 4.090588 GCCCAACGGATCGACCCA 62.091 66.667 0.00 0.00 34.64 4.51
37 38 4.090588 TGCCCAACGGATCGACCC 62.091 66.667 0.00 0.00 34.64 4.46
38 39 2.818274 GTGCCCAACGGATCGACC 60.818 66.667 0.00 0.00 0.00 4.79
39 40 2.047655 TGTGCCCAACGGATCGAC 60.048 61.111 0.00 0.00 0.00 4.20
40 41 2.047655 GTGTGCCCAACGGATCGA 60.048 61.111 0.00 0.00 0.00 3.59
41 42 2.047274 AGTGTGCCCAACGGATCG 60.047 61.111 0.00 0.00 0.00 3.69
42 43 2.690778 GCAGTGTGCCCAACGGATC 61.691 63.158 0.00 0.00 37.42 3.36
43 44 2.672996 GCAGTGTGCCCAACGGAT 60.673 61.111 0.00 0.00 37.42 4.18
52 53 1.805428 AATTTGGGTCGGCAGTGTGC 61.805 55.000 0.00 0.00 44.08 4.57
53 54 0.673437 AAATTTGGGTCGGCAGTGTG 59.327 50.000 0.00 0.00 0.00 3.82
54 55 2.279935 TAAATTTGGGTCGGCAGTGT 57.720 45.000 0.00 0.00 0.00 3.55
55 56 3.651803 TTTAAATTTGGGTCGGCAGTG 57.348 42.857 0.00 0.00 0.00 3.66
56 57 4.502431 CCTTTTTAAATTTGGGTCGGCAGT 60.502 41.667 0.00 0.00 0.00 4.40
57 58 3.993736 CCTTTTTAAATTTGGGTCGGCAG 59.006 43.478 0.00 0.00 0.00 4.85
58 59 3.244249 CCCTTTTTAAATTTGGGTCGGCA 60.244 43.478 0.00 0.00 33.49 5.69
59 60 3.331150 CCCTTTTTAAATTTGGGTCGGC 58.669 45.455 0.00 0.00 33.49 5.54
60 61 3.331150 GCCCTTTTTAAATTTGGGTCGG 58.669 45.455 16.84 2.59 39.97 4.79
61 62 2.990514 CGCCCTTTTTAAATTTGGGTCG 59.009 45.455 16.84 16.03 39.97 4.79
62 63 3.007074 TCCGCCCTTTTTAAATTTGGGTC 59.993 43.478 16.84 10.95 39.97 4.46
63 64 2.973406 TCCGCCCTTTTTAAATTTGGGT 59.027 40.909 16.84 0.00 39.97 4.51
64 65 3.244249 TGTCCGCCCTTTTTAAATTTGGG 60.244 43.478 13.32 13.32 40.74 4.12
65 66 3.993736 CTGTCCGCCCTTTTTAAATTTGG 59.006 43.478 0.00 0.00 0.00 3.28
66 67 3.431912 GCTGTCCGCCCTTTTTAAATTTG 59.568 43.478 0.00 0.00 0.00 2.32
67 68 3.659786 GCTGTCCGCCCTTTTTAAATTT 58.340 40.909 0.00 0.00 0.00 1.82
68 69 2.352323 CGCTGTCCGCCCTTTTTAAATT 60.352 45.455 0.00 0.00 34.21 1.82
69 70 1.201414 CGCTGTCCGCCCTTTTTAAAT 59.799 47.619 0.00 0.00 34.21 1.40
70 71 0.594110 CGCTGTCCGCCCTTTTTAAA 59.406 50.000 0.00 0.00 34.21 1.52
71 72 1.238625 CCGCTGTCCGCCCTTTTTAA 61.239 55.000 0.00 0.00 35.03 1.52
72 73 1.673009 CCGCTGTCCGCCCTTTTTA 60.673 57.895 0.00 0.00 35.03 1.52
73 74 2.983592 CCGCTGTCCGCCCTTTTT 60.984 61.111 0.00 0.00 35.03 1.94
104 105 1.063321 GTTTGCTTTTTGCCCGTTTGG 59.937 47.619 0.00 0.00 42.00 3.28
105 106 1.734465 TGTTTGCTTTTTGCCCGTTTG 59.266 42.857 0.00 0.00 42.00 2.93
106 107 2.100605 TGTTTGCTTTTTGCCCGTTT 57.899 40.000 0.00 0.00 42.00 3.60
107 108 2.100605 TTGTTTGCTTTTTGCCCGTT 57.899 40.000 0.00 0.00 42.00 4.44
108 109 2.100605 TTTGTTTGCTTTTTGCCCGT 57.899 40.000 0.00 0.00 42.00 5.28
109 110 3.167425 GTTTTTGTTTGCTTTTTGCCCG 58.833 40.909 0.00 0.00 42.00 6.13
110 111 3.167425 CGTTTTTGTTTGCTTTTTGCCC 58.833 40.909 0.00 0.00 42.00 5.36
111 112 3.816091 ACGTTTTTGTTTGCTTTTTGCC 58.184 36.364 0.00 0.00 42.00 4.52
112 113 4.458708 TGACGTTTTTGTTTGCTTTTTGC 58.541 34.783 0.00 0.00 43.25 3.68
113 114 6.462323 CAGATGACGTTTTTGTTTGCTTTTTG 59.538 34.615 0.00 0.00 0.00 2.44
114 115 6.147000 ACAGATGACGTTTTTGTTTGCTTTTT 59.853 30.769 0.00 0.00 0.00 1.94
115 116 5.637387 ACAGATGACGTTTTTGTTTGCTTTT 59.363 32.000 0.00 0.00 0.00 2.27
116 117 5.167845 ACAGATGACGTTTTTGTTTGCTTT 58.832 33.333 0.00 0.00 0.00 3.51
117 118 4.743493 ACAGATGACGTTTTTGTTTGCTT 58.257 34.783 0.00 0.00 0.00 3.91
118 119 4.370364 ACAGATGACGTTTTTGTTTGCT 57.630 36.364 0.00 0.00 0.00 3.91
119 120 5.247340 CAAACAGATGACGTTTTTGTTTGC 58.753 37.500 23.18 0.00 46.29 3.68
121 122 4.867608 CCCAAACAGATGACGTTTTTGTTT 59.132 37.500 12.40 12.40 41.23 2.83
122 123 4.081917 ACCCAAACAGATGACGTTTTTGTT 60.082 37.500 0.00 0.00 34.40 2.83
123 124 3.445805 ACCCAAACAGATGACGTTTTTGT 59.554 39.130 0.00 0.00 34.40 2.83
124 125 4.040445 ACCCAAACAGATGACGTTTTTG 57.960 40.909 0.00 0.00 34.40 2.44
125 126 3.242936 CGACCCAAACAGATGACGTTTTT 60.243 43.478 0.00 0.00 34.40 1.94
126 127 2.289547 CGACCCAAACAGATGACGTTTT 59.710 45.455 0.00 0.00 34.40 2.43
127 128 1.871039 CGACCCAAACAGATGACGTTT 59.129 47.619 0.00 0.00 37.04 3.60
128 129 1.508632 CGACCCAAACAGATGACGTT 58.491 50.000 0.00 0.00 0.00 3.99
129 130 0.320421 CCGACCCAAACAGATGACGT 60.320 55.000 0.00 0.00 0.00 4.34
130 131 1.635663 GCCGACCCAAACAGATGACG 61.636 60.000 0.00 0.00 0.00 4.35
131 132 1.305930 GGCCGACCCAAACAGATGAC 61.306 60.000 0.00 0.00 0.00 3.06
132 133 1.002624 GGCCGACCCAAACAGATGA 60.003 57.895 0.00 0.00 0.00 2.92
133 134 3.590824 GGCCGACCCAAACAGATG 58.409 61.111 0.00 0.00 0.00 2.90
143 144 4.324991 AACTCCAACGGGCCGACC 62.325 66.667 35.78 0.00 0.00 4.79
144 145 3.047877 CAACTCCAACGGGCCGAC 61.048 66.667 35.78 0.00 0.00 4.79
147 148 2.180159 TAGAGCAACTCCAACGGGCC 62.180 60.000 0.00 0.00 0.00 5.80
148 149 0.321298 TTAGAGCAACTCCAACGGGC 60.321 55.000 0.00 0.00 0.00 6.13
149 150 2.403252 ATTAGAGCAACTCCAACGGG 57.597 50.000 0.00 0.00 0.00 5.28
150 151 4.386867 TCTATTAGAGCAACTCCAACGG 57.613 45.455 0.00 0.00 0.00 4.44
151 152 5.689514 CAGATCTATTAGAGCAACTCCAACG 59.310 44.000 11.29 0.00 31.99 4.10
152 153 5.988561 CCAGATCTATTAGAGCAACTCCAAC 59.011 44.000 11.29 0.00 31.99 3.77
153 154 5.899547 TCCAGATCTATTAGAGCAACTCCAA 59.100 40.000 11.29 0.00 31.99 3.53
154 155 5.303078 GTCCAGATCTATTAGAGCAACTCCA 59.697 44.000 11.29 0.00 31.99 3.86
155 156 5.279256 GGTCCAGATCTATTAGAGCAACTCC 60.279 48.000 11.29 5.04 31.99 3.85
156 157 5.538433 AGGTCCAGATCTATTAGAGCAACTC 59.462 44.000 11.29 0.00 31.99 3.01
157 158 5.463154 AGGTCCAGATCTATTAGAGCAACT 58.537 41.667 11.29 0.00 31.99 3.16
158 159 5.799827 AGGTCCAGATCTATTAGAGCAAC 57.200 43.478 11.29 6.25 31.99 4.17
159 160 6.814954 AAAGGTCCAGATCTATTAGAGCAA 57.185 37.500 11.29 0.00 31.99 3.91
160 161 6.814954 AAAAGGTCCAGATCTATTAGAGCA 57.185 37.500 11.29 0.00 31.99 4.26
161 162 7.051000 ACAAAAAGGTCCAGATCTATTAGAGC 58.949 38.462 0.00 0.56 0.00 4.09
162 163 9.454859 AAACAAAAAGGTCCAGATCTATTAGAG 57.545 33.333 0.00 0.00 0.00 2.43
163 164 9.807921 AAAACAAAAAGGTCCAGATCTATTAGA 57.192 29.630 0.00 0.00 0.00 2.10
192 193 9.791801 TGATTCAGTATGGCAAGCTTTATATAA 57.208 29.630 0.00 0.00 36.16 0.98
193 194 9.791801 TTGATTCAGTATGGCAAGCTTTATATA 57.208 29.630 0.00 0.00 36.16 0.86
194 195 8.696043 TTGATTCAGTATGGCAAGCTTTATAT 57.304 30.769 0.00 0.00 36.16 0.86
195 196 7.992608 TCTTGATTCAGTATGGCAAGCTTTATA 59.007 33.333 0.00 0.00 38.80 0.98
196 197 6.830324 TCTTGATTCAGTATGGCAAGCTTTAT 59.170 34.615 0.00 0.00 38.80 1.40
197 198 6.179756 TCTTGATTCAGTATGGCAAGCTTTA 58.820 36.000 0.00 0.00 38.80 1.85
198 199 5.012239 TCTTGATTCAGTATGGCAAGCTTT 58.988 37.500 0.00 0.00 38.80 3.51
199 200 4.592942 TCTTGATTCAGTATGGCAAGCTT 58.407 39.130 0.00 0.00 38.80 3.74
200 201 4.226427 TCTTGATTCAGTATGGCAAGCT 57.774 40.909 0.00 0.00 38.80 3.74
201 202 4.397417 ACTTCTTGATTCAGTATGGCAAGC 59.603 41.667 0.00 0.00 38.80 4.01
202 203 6.404074 GGAACTTCTTGATTCAGTATGGCAAG 60.404 42.308 0.00 0.00 39.61 4.01
203 204 5.415701 GGAACTTCTTGATTCAGTATGGCAA 59.584 40.000 0.00 0.00 36.16 4.52
204 205 4.943705 GGAACTTCTTGATTCAGTATGGCA 59.056 41.667 0.00 0.00 36.16 4.92
205 206 5.065731 CAGGAACTTCTTGATTCAGTATGGC 59.934 44.000 0.00 0.00 34.60 4.40
206 207 6.176183 ACAGGAACTTCTTGATTCAGTATGG 58.824 40.000 7.84 0.00 34.60 2.74
207 208 7.102346 AGACAGGAACTTCTTGATTCAGTATG 58.898 38.462 7.84 0.00 34.60 2.39
208 209 7.251321 AGACAGGAACTTCTTGATTCAGTAT 57.749 36.000 7.84 0.00 34.60 2.12
209 210 6.672266 AGACAGGAACTTCTTGATTCAGTA 57.328 37.500 7.84 0.00 34.60 2.74
210 211 5.559148 AGACAGGAACTTCTTGATTCAGT 57.441 39.130 7.84 0.00 34.60 3.41
211 212 6.589523 CAGTAGACAGGAACTTCTTGATTCAG 59.410 42.308 7.84 0.00 34.60 3.02
212 213 6.042093 ACAGTAGACAGGAACTTCTTGATTCA 59.958 38.462 7.84 0.00 34.60 2.57
213 214 6.459923 ACAGTAGACAGGAACTTCTTGATTC 58.540 40.000 7.84 0.00 34.60 2.52
214 215 6.268847 AGACAGTAGACAGGAACTTCTTGATT 59.731 38.462 7.84 0.00 34.60 2.57
215 216 5.777732 AGACAGTAGACAGGAACTTCTTGAT 59.222 40.000 7.84 0.00 34.60 2.57
216 217 5.141182 AGACAGTAGACAGGAACTTCTTGA 58.859 41.667 7.84 0.00 34.60 3.02
217 218 5.461032 AGACAGTAGACAGGAACTTCTTG 57.539 43.478 0.00 0.00 34.60 3.02
218 219 6.069331 TGTAGACAGTAGACAGGAACTTCTT 58.931 40.000 0.00 0.00 34.60 2.52
219 220 5.632118 TGTAGACAGTAGACAGGAACTTCT 58.368 41.667 0.00 0.00 34.60 2.85
220 221 5.945155 CTGTAGACAGTAGACAGGAACTTC 58.055 45.833 1.28 0.00 39.09 3.01
221 222 5.968528 CTGTAGACAGTAGACAGGAACTT 57.031 43.478 1.28 0.00 39.09 2.66
235 236 6.126997 CCTTCCTCTAGTCTAGACTGTAGACA 60.127 46.154 31.47 12.46 44.66 3.41
236 237 6.098695 TCCTTCCTCTAGTCTAGACTGTAGAC 59.901 46.154 31.47 3.38 42.52 2.59
237 238 6.203813 TCCTTCCTCTAGTCTAGACTGTAGA 58.796 44.000 31.47 24.99 42.52 2.59
238 239 6.488769 TCCTTCCTCTAGTCTAGACTGTAG 57.511 45.833 31.47 25.56 42.52 2.74
239 240 6.043474 GGATCCTTCCTCTAGTCTAGACTGTA 59.957 46.154 31.47 19.15 39.46 2.74
240 241 5.163131 GGATCCTTCCTCTAGTCTAGACTGT 60.163 48.000 31.47 12.34 39.46 3.55
241 242 5.163141 TGGATCCTTCCTCTAGTCTAGACTG 60.163 48.000 31.47 21.42 43.07 3.51
242 243 4.979039 TGGATCCTTCCTCTAGTCTAGACT 59.021 45.833 27.72 27.72 43.07 3.24
243 244 5.313280 TGGATCCTTCCTCTAGTCTAGAC 57.687 47.826 15.41 15.41 43.07 2.59
244 245 5.687970 CGTTGGATCCTTCCTCTAGTCTAGA 60.688 48.000 14.23 9.28 43.07 2.43
245 246 4.517453 CGTTGGATCCTTCCTCTAGTCTAG 59.483 50.000 14.23 0.00 43.07 2.43
246 247 4.462133 CGTTGGATCCTTCCTCTAGTCTA 58.538 47.826 14.23 0.00 43.07 2.59
247 248 3.292460 CGTTGGATCCTTCCTCTAGTCT 58.708 50.000 14.23 0.00 43.07 3.24
248 249 2.362717 CCGTTGGATCCTTCCTCTAGTC 59.637 54.545 14.23 0.00 43.07 2.59
249 250 2.389715 CCGTTGGATCCTTCCTCTAGT 58.610 52.381 14.23 0.00 43.07 2.57
250 251 1.069358 GCCGTTGGATCCTTCCTCTAG 59.931 57.143 14.23 0.00 43.07 2.43
251 252 1.120530 GCCGTTGGATCCTTCCTCTA 58.879 55.000 14.23 0.00 43.07 2.43
252 253 0.909610 TGCCGTTGGATCCTTCCTCT 60.910 55.000 14.23 0.00 43.07 3.69
253 254 0.462759 CTGCCGTTGGATCCTTCCTC 60.463 60.000 14.23 0.21 43.07 3.71
254 255 0.909610 TCTGCCGTTGGATCCTTCCT 60.910 55.000 14.23 0.00 43.07 3.36
255 256 0.181350 ATCTGCCGTTGGATCCTTCC 59.819 55.000 14.23 0.00 42.94 3.46
256 257 1.943340 GAATCTGCCGTTGGATCCTTC 59.057 52.381 14.23 5.02 0.00 3.46
257 258 1.281867 TGAATCTGCCGTTGGATCCTT 59.718 47.619 14.23 0.00 0.00 3.36
258 259 0.911769 TGAATCTGCCGTTGGATCCT 59.088 50.000 14.23 0.00 0.00 3.24
259 260 1.876156 GATGAATCTGCCGTTGGATCC 59.124 52.381 4.20 4.20 0.00 3.36
260 261 2.805099 GAGATGAATCTGCCGTTGGATC 59.195 50.000 0.00 0.00 37.25 3.36
261 262 2.486191 GGAGATGAATCTGCCGTTGGAT 60.486 50.000 0.00 0.00 39.08 3.41
262 263 1.134401 GGAGATGAATCTGCCGTTGGA 60.134 52.381 0.00 0.00 39.08 3.53
263 264 1.303309 GGAGATGAATCTGCCGTTGG 58.697 55.000 0.00 0.00 39.08 3.77
269 270 1.202746 GGAGTGGGGAGATGAATCTGC 60.203 57.143 3.39 3.39 43.57 4.26
270 271 1.419387 GGGAGTGGGGAGATGAATCTG 59.581 57.143 0.00 0.00 37.25 2.90
271 272 1.813102 GGGAGTGGGGAGATGAATCT 58.187 55.000 0.00 0.00 40.50 2.40
272 273 0.394565 CGGGAGTGGGGAGATGAATC 59.605 60.000 0.00 0.00 0.00 2.52
273 274 0.031111 TCGGGAGTGGGGAGATGAAT 60.031 55.000 0.00 0.00 0.00 2.57
274 275 0.687757 CTCGGGAGTGGGGAGATGAA 60.688 60.000 0.00 0.00 0.00 2.57
275 276 1.075970 CTCGGGAGTGGGGAGATGA 60.076 63.158 0.00 0.00 0.00 2.92
276 277 2.801631 GCTCGGGAGTGGGGAGATG 61.802 68.421 0.00 0.00 0.00 2.90
277 278 2.444895 GCTCGGGAGTGGGGAGAT 60.445 66.667 0.00 0.00 0.00 2.75
278 279 3.663815 GAGCTCGGGAGTGGGGAGA 62.664 68.421 0.00 0.00 0.00 3.71
279 280 3.151022 GAGCTCGGGAGTGGGGAG 61.151 72.222 0.00 0.00 0.00 4.30
280 281 4.779733 GGAGCTCGGGAGTGGGGA 62.780 72.222 7.83 0.00 0.00 4.81
283 284 3.522731 CTCGGAGCTCGGGAGTGG 61.523 72.222 19.94 0.00 43.26 4.00
284 285 2.752238 ACTCGGAGCTCGGGAGTG 60.752 66.667 28.17 16.08 43.26 3.51
285 286 2.752238 CACTCGGAGCTCGGGAGT 60.752 66.667 25.14 25.14 43.26 3.85
286 287 3.522731 CCACTCGGAGCTCGGGAG 61.523 72.222 24.09 24.09 43.26 4.30
290 291 4.803426 GTGGCCACTCGGAGCTCG 62.803 72.222 29.12 3.33 40.90 5.03
291 292 4.459089 GGTGGCCACTCGGAGCTC 62.459 72.222 33.91 12.20 0.00 4.09
299 300 4.270153 TGGAGAGGGGTGGCCACT 62.270 66.667 33.91 16.27 41.79 4.00
300 301 3.721706 CTGGAGAGGGGTGGCCAC 61.722 72.222 28.57 28.57 0.00 5.01
301 302 4.270153 ACTGGAGAGGGGTGGCCA 62.270 66.667 0.00 0.00 0.00 5.36
302 303 3.403558 GACTGGAGAGGGGTGGCC 61.404 72.222 0.00 0.00 0.00 5.36
303 304 2.607750 TGACTGGAGAGGGGTGGC 60.608 66.667 0.00 0.00 0.00 5.01
304 305 2.650116 CGTGACTGGAGAGGGGTGG 61.650 68.421 0.00 0.00 0.00 4.61
305 306 0.972983 ATCGTGACTGGAGAGGGGTG 60.973 60.000 0.00 0.00 0.00 4.61
306 307 0.684805 GATCGTGACTGGAGAGGGGT 60.685 60.000 0.00 0.00 0.00 4.95
307 308 1.395826 GGATCGTGACTGGAGAGGGG 61.396 65.000 0.00 0.00 0.00 4.79
308 309 0.684479 TGGATCGTGACTGGAGAGGG 60.684 60.000 0.00 0.00 0.00 4.30
309 310 0.743688 CTGGATCGTGACTGGAGAGG 59.256 60.000 0.00 0.00 0.00 3.69
310 311 1.756430 TCTGGATCGTGACTGGAGAG 58.244 55.000 0.00 0.00 0.00 3.20
311 312 2.443958 ATCTGGATCGTGACTGGAGA 57.556 50.000 0.00 0.00 0.00 3.71
312 313 2.223923 GGAATCTGGATCGTGACTGGAG 60.224 54.545 0.00 0.00 0.00 3.86
313 314 1.757118 GGAATCTGGATCGTGACTGGA 59.243 52.381 0.00 0.00 0.00 3.86
314 315 1.482182 TGGAATCTGGATCGTGACTGG 59.518 52.381 0.00 0.00 0.00 4.00
315 316 2.428530 TCTGGAATCTGGATCGTGACTG 59.571 50.000 0.00 0.00 0.00 3.51
316 317 2.428890 GTCTGGAATCTGGATCGTGACT 59.571 50.000 0.00 0.00 0.00 3.41
317 318 2.428890 AGTCTGGAATCTGGATCGTGAC 59.571 50.000 0.00 0.00 0.00 3.67
318 319 2.690497 GAGTCTGGAATCTGGATCGTGA 59.310 50.000 0.00 0.00 0.00 4.35
319 320 2.542618 CGAGTCTGGAATCTGGATCGTG 60.543 54.545 0.00 0.00 0.00 4.35
320 321 1.678627 CGAGTCTGGAATCTGGATCGT 59.321 52.381 0.00 0.00 0.00 3.73
321 322 1.678627 ACGAGTCTGGAATCTGGATCG 59.321 52.381 0.00 0.00 35.21 3.69
322 323 2.690497 TGACGAGTCTGGAATCTGGATC 59.310 50.000 4.78 0.00 0.00 3.36
323 324 2.692557 CTGACGAGTCTGGAATCTGGAT 59.307 50.000 4.78 0.00 0.00 3.41
324 325 2.095461 CTGACGAGTCTGGAATCTGGA 58.905 52.381 4.78 0.00 0.00 3.86
325 326 1.470632 GCTGACGAGTCTGGAATCTGG 60.471 57.143 11.17 0.00 0.00 3.86
326 327 1.470632 GGCTGACGAGTCTGGAATCTG 60.471 57.143 11.17 0.00 0.00 2.90
327 328 0.820871 GGCTGACGAGTCTGGAATCT 59.179 55.000 11.17 0.00 0.00 2.40
328 329 3.354131 GGCTGACGAGTCTGGAATC 57.646 57.895 11.17 0.00 0.00 2.52
378 379 2.176055 CGTCGACGAGGACCAGTG 59.824 66.667 33.35 0.00 43.02 3.66
381 382 2.745100 CTCCGTCGACGAGGACCA 60.745 66.667 37.65 13.39 43.02 4.02
409 414 2.047179 AGAGGAAAGCGCGGGAAC 60.047 61.111 8.83 0.00 0.00 3.62
410 415 2.264794 GAGAGGAAAGCGCGGGAA 59.735 61.111 8.83 0.00 0.00 3.97
439 444 3.532155 CGAAGAGGAGGCCCCGAG 61.532 72.222 0.00 0.00 40.87 4.63
440 445 3.899545 AACGAAGAGGAGGCCCCGA 62.900 63.158 0.00 0.00 40.87 5.14
441 446 3.391382 AACGAAGAGGAGGCCCCG 61.391 66.667 0.00 0.00 40.87 5.73
442 447 2.269241 CAACGAAGAGGAGGCCCC 59.731 66.667 0.00 0.00 0.00 5.80
443 448 2.436824 GCAACGAAGAGGAGGCCC 60.437 66.667 0.00 0.00 0.00 5.80
444 449 2.815647 CGCAACGAAGAGGAGGCC 60.816 66.667 0.00 0.00 0.00 5.19
445 450 2.815647 CCGCAACGAAGAGGAGGC 60.816 66.667 0.00 0.00 0.00 4.70
446 451 1.004918 AACCGCAACGAAGAGGAGG 60.005 57.895 8.36 0.00 0.00 4.30
447 452 1.901650 GCAACCGCAACGAAGAGGAG 61.902 60.000 8.36 2.79 38.36 3.69
448 453 1.959226 GCAACCGCAACGAAGAGGA 60.959 57.895 8.36 0.00 38.36 3.71
454 459 2.108157 ACTCAGCAACCGCAACGA 59.892 55.556 0.00 0.00 42.27 3.85
455 460 2.249309 CACTCAGCAACCGCAACG 59.751 61.111 0.00 0.00 42.27 4.10
458 463 4.908687 ACGCACTCAGCAACCGCA 62.909 61.111 0.00 0.00 46.13 5.69
461 466 2.551270 CGAACGCACTCAGCAACC 59.449 61.111 0.00 0.00 46.13 3.77
463 468 3.345808 GCCGAACGCACTCAGCAA 61.346 61.111 0.00 0.00 46.13 3.91
546 568 3.506096 CCGCGCTCGAGTGGAGTA 61.506 66.667 26.24 0.00 45.03 2.59
572 600 4.760047 GTGCGTGCGTCCCCTGAT 62.760 66.667 0.00 0.00 0.00 2.90
590 622 3.071206 GCTCTGGAGAGGCCGACA 61.071 66.667 5.82 0.00 42.29 4.35
607 643 2.187946 GGTGCCACGGATCTCTGG 59.812 66.667 5.16 5.16 0.00 3.86
608 644 1.153489 CAGGTGCCACGGATCTCTG 60.153 63.158 0.00 0.00 0.00 3.35
609 645 2.362369 CCAGGTGCCACGGATCTCT 61.362 63.158 0.00 0.00 0.00 3.10
683 720 1.280421 CCTTGAAGGAGGAGGTGAAGG 59.720 57.143 4.95 0.00 37.67 3.46
2275 2345 5.818887 TCCATGAAAAGACTCAATCCATCA 58.181 37.500 0.00 0.00 0.00 3.07
2317 2387 7.270047 TGTTGTACATAATAGTAGTGGGCTTC 58.730 38.462 0.00 0.00 0.00 3.86
2545 2615 6.604396 ACATTGCAGAAATCATGGTATTGAGA 59.396 34.615 0.00 0.00 0.00 3.27
2632 2703 5.031066 TGTAAGTTACAACAGAAGGCACT 57.969 39.130 13.36 0.00 36.21 4.40
2677 2748 2.169352 CTCTGCTAGCAGCCCTTCTTTA 59.831 50.000 35.21 16.71 41.51 1.85
2734 2805 2.664402 AACTGGAGTTTGGAGCACAT 57.336 45.000 0.00 0.00 33.93 3.21
2753 2824 4.756642 CACTCTGACCACTTGATTTAGCAA 59.243 41.667 0.00 0.00 0.00 3.91
2796 2867 3.620374 CAGATAAGTTGCAGCCTGTACAG 59.380 47.826 16.34 16.34 0.00 2.74
2801 2872 0.737219 GCCAGATAAGTTGCAGCCTG 59.263 55.000 0.00 0.00 0.00 4.85
2873 2944 5.606329 CCCCTTTCCTTGAGAAGAGAGATAT 59.394 44.000 0.00 0.00 35.40 1.63
2897 2968 5.979517 GCAATTTTACATGCTCCCATAGTTC 59.020 40.000 0.00 0.00 39.46 3.01
2903 2974 6.171369 CGGAAGCAATTTTACATGCTCCCA 62.171 45.833 3.96 0.00 46.42 4.37
3127 3223 2.477104 TATGATCCTCAGGCCACAGA 57.523 50.000 5.01 0.00 0.00 3.41
3160 3262 5.473504 AGTTACGCCTTCTTCATCACAAAAT 59.526 36.000 0.00 0.00 0.00 1.82
3315 3433 6.328148 TCCTTGTCCTTGGTAAAGAGTAAAGA 59.672 38.462 5.93 0.00 35.19 2.52
3319 3437 5.011738 CACTCCTTGTCCTTGGTAAAGAGTA 59.988 44.000 0.00 0.00 35.19 2.59
3322 3440 3.496160 GCACTCCTTGTCCTTGGTAAAGA 60.496 47.826 5.93 0.00 35.19 2.52
3323 3441 2.814336 GCACTCCTTGTCCTTGGTAAAG 59.186 50.000 0.00 0.00 0.00 1.85
3324 3442 2.173782 TGCACTCCTTGTCCTTGGTAAA 59.826 45.455 0.00 0.00 0.00 2.01
3325 3443 1.771854 TGCACTCCTTGTCCTTGGTAA 59.228 47.619 0.00 0.00 0.00 2.85
3326 3444 1.429930 TGCACTCCTTGTCCTTGGTA 58.570 50.000 0.00 0.00 0.00 3.25
3390 3715 6.820656 ACTGTTATGAGAGGCATTACTGAAAG 59.179 38.462 0.00 0.00 37.54 2.62
3426 3751 7.222999 CGCACTTAACACTTTCCCAAAAATAAA 59.777 33.333 0.00 0.00 0.00 1.40
3429 3754 5.047188 CGCACTTAACACTTTCCCAAAAAT 58.953 37.500 0.00 0.00 0.00 1.82
3463 3796 0.250124 TGTTTACCAGTCTGCACCCG 60.250 55.000 0.00 0.00 0.00 5.28
3517 3851 4.957296 ACATCTTACATTATGGGACGGAC 58.043 43.478 0.00 0.00 0.00 4.79
3567 3902 3.895656 CCTCCGTCCCATAATGTAAGAGA 59.104 47.826 0.00 0.00 0.00 3.10
3568 3903 3.006967 CCCTCCGTCCCATAATGTAAGAG 59.993 52.174 0.00 0.00 0.00 2.85
3606 3941 5.409520 TCAGATTGCTAACTAAAGTGCACTG 59.590 40.000 22.49 10.86 35.01 3.66
3623 3958 3.693085 AGCCTTGCAGTAACATCAGATTG 59.307 43.478 0.00 0.00 0.00 2.67
3770 4118 0.034337 AATCACAACGGCGGTACAGT 59.966 50.000 13.24 0.00 0.00 3.55
3771 4119 0.719465 GAATCACAACGGCGGTACAG 59.281 55.000 13.24 0.00 0.00 2.74
3826 4174 4.979197 GGTTTCACAATAATTGCACAACGA 59.021 37.500 0.00 0.00 0.00 3.85
3842 4190 8.528917 AGTTTTTGTCTAAACTTTGGTTTCAC 57.471 30.769 0.00 0.00 43.85 3.18
3853 4201 6.688813 CAGACTGCAGAAGTTTTTGTCTAAAC 59.311 38.462 23.35 0.00 40.07 2.01
3860 4208 3.004106 CCTCCAGACTGCAGAAGTTTTTG 59.996 47.826 23.35 2.55 40.07 2.44
3864 4212 1.071385 CACCTCCAGACTGCAGAAGTT 59.929 52.381 23.35 0.00 40.07 2.66
3866 4214 0.972134 TCACCTCCAGACTGCAGAAG 59.028 55.000 23.35 9.25 0.00 2.85
3881 4229 3.391382 AGCCGCCAGGTAGTCACC 61.391 66.667 0.00 0.00 46.19 4.02
3903 4251 4.379174 GCCTCTTTCGGCTTGTCA 57.621 55.556 0.00 0.00 46.63 3.58
3912 4260 2.260869 TTGCAGCACCGCCTCTTTC 61.261 57.895 0.00 0.00 0.00 2.62
3913 4261 2.203337 TTGCAGCACCGCCTCTTT 60.203 55.556 0.00 0.00 0.00 2.52
3915 4263 3.946201 AGTTGCAGCACCGCCTCT 61.946 61.111 2.55 0.00 0.00 3.69
3924 4272 1.827789 TGGGTTCACCAGTTGCAGC 60.828 57.895 0.00 0.00 46.80 5.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.