Multiple sequence alignment - TraesCS2D01G532300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G532300 chr2D 100.000 4337 0 0 1 4337 617632812 617637148 0.000000e+00 8010.0
1 TraesCS2D01G532300 chr2D 94.201 2535 147 0 1362 3896 617760443 617762977 0.000000e+00 3868.0
2 TraesCS2D01G532300 chr2D 91.455 2715 199 13 667 3378 617886975 617889659 0.000000e+00 3698.0
3 TraesCS2D01G532300 chr2D 90.906 2606 209 14 817 3414 617538642 617541227 0.000000e+00 3474.0
4 TraesCS2D01G532300 chr2D 90.998 2566 194 16 834 3376 617909981 617907430 0.000000e+00 3424.0
5 TraesCS2D01G532300 chr2D 91.705 2411 184 8 970 3378 617546408 617548804 0.000000e+00 3330.0
6 TraesCS2D01G532300 chr2D 89.418 2561 221 16 834 3378 617730709 617733235 0.000000e+00 3182.0
7 TraesCS2D01G532300 chr2D 94.253 696 12 5 636 1325 617759771 617760444 0.000000e+00 1038.0
8 TraesCS2D01G532300 chr2D 95.272 423 19 1 29 450 141553636 141554058 0.000000e+00 669.0
9 TraesCS2D01G532300 chr2D 95.070 426 20 1 24 448 511380816 511381241 0.000000e+00 669.0
10 TraesCS2D01G532300 chr2D 95.059 425 19 2 24 446 415582228 415581804 0.000000e+00 667.0
11 TraesCS2D01G532300 chr2D 91.732 254 17 3 4086 4337 617763035 617763286 2.480000e-92 350.0
12 TraesCS2D01G532300 chr2D 86.405 331 29 6 3499 3814 617413661 617413332 8.930000e-92 348.0
13 TraesCS2D01G532300 chr2D 85.388 219 31 1 3120 3337 617414025 617413807 4.360000e-55 226.0
14 TraesCS2D01G532300 chr2D 87.013 77 9 1 4167 4242 617413295 617413219 7.730000e-13 86.1
15 TraesCS2D01G532300 chr2D 97.500 40 1 0 3469 3508 617541224 617541263 7.780000e-08 69.4
16 TraesCS2D01G532300 chr2A 92.555 2928 195 4 970 3896 746620354 746623259 0.000000e+00 4178.0
17 TraesCS2D01G532300 chr2A 95.064 2492 120 3 890 3378 748437415 748439906 0.000000e+00 3917.0
18 TraesCS2D01G532300 chr2A 94.701 1038 46 3 2820 3856 748209749 748210778 0.000000e+00 1604.0
19 TraesCS2D01G532300 chr2A 90.215 511 32 9 3380 3888 748452801 748452307 0.000000e+00 651.0
20 TraesCS2D01G532300 chr2A 93.069 404 27 1 3383 3786 748464674 748464272 1.340000e-164 590.0
21 TraesCS2D01G532300 chr2A 97.619 294 6 1 602 894 748436120 748436413 1.800000e-138 503.0
22 TraesCS2D01G532300 chr2A 95.142 247 5 1 4098 4337 748210784 748211030 2.450000e-102 383.0
23 TraesCS2D01G532300 chr2A 91.700 253 19 1 4085 4337 748452282 748452032 2.480000e-92 350.0
24 TraesCS2D01G532300 chr2A 89.764 254 23 3 4085 4337 746623276 746623527 5.410000e-84 322.0
25 TraesCS2D01G532300 chr2A 93.143 175 11 1 3915 4088 469790208 469790034 5.570000e-64 255.0
26 TraesCS2D01G532300 chr2B 91.063 2954 240 8 971 3923 753931337 753928407 0.000000e+00 3971.0
27 TraesCS2D01G532300 chr2B 91.269 2932 215 18 976 3898 753792772 753795671 0.000000e+00 3958.0
28 TraesCS2D01G532300 chr2B 91.495 2140 172 5 1523 3660 753786113 753788244 0.000000e+00 2935.0
29 TraesCS2D01G532300 chr2B 92.652 871 53 9 3027 3896 753935066 753934206 0.000000e+00 1243.0
30 TraesCS2D01G532300 chr2B 96.443 253 9 0 4085 4337 753928408 753928156 6.710000e-113 418.0
31 TraesCS2D01G532300 chr2B 91.304 253 22 0 4085 4337 753934149 753933897 3.210000e-91 346.0
32 TraesCS2D01G532300 chr2B 88.583 254 16 4 4086 4337 753795732 753795974 3.280000e-76 296.0
33 TraesCS2D01G532300 chr2B 90.761 184 15 2 3907 4090 519599038 519598857 1.200000e-60 244.0
34 TraesCS2D01G532300 chr2B 95.349 43 2 0 4295 4337 753788234 753788276 7.780000e-08 69.4
35 TraesCS2D01G532300 chr3D 95.059 425 21 0 24 448 56036773 56037197 0.000000e+00 669.0
36 TraesCS2D01G532300 chr3D 94.872 429 18 4 24 450 300306290 300306716 0.000000e+00 667.0
37 TraesCS2D01G532300 chr3D 93.529 170 11 0 3919 4088 105119473 105119304 2.000000e-63 254.0
38 TraesCS2D01G532300 chr1D 95.070 426 20 1 24 448 218233623 218233198 0.000000e+00 669.0
39 TraesCS2D01G532300 chr7D 95.035 423 21 0 27 449 127857106 127856684 0.000000e+00 665.0
40 TraesCS2D01G532300 chr5D 95.047 424 20 1 27 449 444603095 444602672 0.000000e+00 665.0
41 TraesCS2D01G532300 chr5D 94.836 426 19 3 27 451 94182160 94181737 0.000000e+00 662.0
42 TraesCS2D01G532300 chr5D 92.571 175 13 0 3920 4094 13287939 13287765 7.200000e-63 252.0
43 TraesCS2D01G532300 chr6D 93.642 173 11 0 3914 4086 409753430 409753258 4.300000e-65 259.0
44 TraesCS2D01G532300 chrUn 94.578 166 9 0 3921 4086 407971182 407971347 1.550000e-64 257.0
45 TraesCS2D01G532300 chr3B 94.578 166 9 0 3921 4086 63001343 63001508 1.550000e-64 257.0
46 TraesCS2D01G532300 chr6A 91.351 185 16 0 3903 4087 5441075 5441259 2.000000e-63 254.0
47 TraesCS2D01G532300 chr1B 92.179 179 12 2 3909 4086 125755464 125755287 7.200000e-63 252.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G532300 chr2D 617632812 617637148 4336 False 8010.000000 8010 100.000000 1 4337 1 chr2D.!!$F4 4336
1 TraesCS2D01G532300 chr2D 617886975 617889659 2684 False 3698.000000 3698 91.455000 667 3378 1 chr2D.!!$F6 2711
2 TraesCS2D01G532300 chr2D 617907430 617909981 2551 True 3424.000000 3424 90.998000 834 3376 1 chr2D.!!$R2 2542
3 TraesCS2D01G532300 chr2D 617546408 617548804 2396 False 3330.000000 3330 91.705000 970 3378 1 chr2D.!!$F3 2408
4 TraesCS2D01G532300 chr2D 617730709 617733235 2526 False 3182.000000 3182 89.418000 834 3378 1 chr2D.!!$F5 2544
5 TraesCS2D01G532300 chr2D 617538642 617541263 2621 False 1771.700000 3474 94.203000 817 3508 2 chr2D.!!$F7 2691
6 TraesCS2D01G532300 chr2D 617759771 617763286 3515 False 1752.000000 3868 93.395333 636 4337 3 chr2D.!!$F8 3701
7 TraesCS2D01G532300 chr2D 617413219 617414025 806 True 220.033333 348 86.268667 3120 4242 3 chr2D.!!$R3 1122
8 TraesCS2D01G532300 chr2A 746620354 746623527 3173 False 2250.000000 4178 91.159500 970 4337 2 chr2A.!!$F1 3367
9 TraesCS2D01G532300 chr2A 748436120 748439906 3786 False 2210.000000 3917 96.341500 602 3378 2 chr2A.!!$F3 2776
10 TraesCS2D01G532300 chr2A 748209749 748211030 1281 False 993.500000 1604 94.921500 2820 4337 2 chr2A.!!$F2 1517
11 TraesCS2D01G532300 chr2A 748452032 748452801 769 True 500.500000 651 90.957500 3380 4337 2 chr2A.!!$R3 957
12 TraesCS2D01G532300 chr2B 753792772 753795974 3202 False 2127.000000 3958 89.926000 976 4337 2 chr2B.!!$F2 3361
13 TraesCS2D01G532300 chr2B 753786113 753788276 2163 False 1502.200000 2935 93.422000 1523 4337 2 chr2B.!!$F1 2814
14 TraesCS2D01G532300 chr2B 753928156 753935066 6910 True 1494.500000 3971 92.865500 971 4337 4 chr2B.!!$R2 3366

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
213 214 0.038890 AGCCTTGCCCTTCTTCTTCC 59.961 55.000 0.00 0.00 0.00 3.46 F
531 532 0.097674 CGTGTAGAGTAACCGACCGG 59.902 60.000 6.94 6.94 42.03 5.28 F
615 616 1.594331 GCCTACGATTGGATTGGACC 58.406 55.000 0.00 0.00 0.00 4.46 F
1618 4390 1.661341 AGCGTGCAATCTCTTCCATC 58.339 50.000 0.00 0.00 0.00 3.51 F
2480 5252 2.014128 CATTGTGGGTATTGGTCGTCC 58.986 52.381 0.00 0.00 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1229 4001 1.061812 AGGTAGATGAGGGTGGAGCAT 60.062 52.381 0.00 0.0 0.00 3.79 R
2221 4993 0.321919 TTGTCCAGAGCAGCATCCAC 60.322 55.000 0.00 0.0 0.00 4.02 R
2466 5238 2.202974 GGCGGACGACCAATACCC 60.203 66.667 4.48 0.0 35.59 3.69 R
2770 5543 1.990799 CCACTTTCGCTCATCGTACA 58.009 50.000 0.00 0.0 39.67 2.90 R
4276 7152 0.175760 TACAGCGCTGATCCTTCACC 59.824 55.000 42.03 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 4.753877 GGCGGTCGGCGAAAAAGC 62.754 66.667 12.92 14.56 44.92 3.51
50 51 3.419759 GCGAAAAAGCCGGCGAGA 61.420 61.111 23.20 0.00 0.00 4.04
52 53 1.154469 CGAAAAAGCCGGCGAGAAC 60.154 57.895 23.20 13.03 0.00 3.01
54 55 0.110192 GAAAAAGCCGGCGAGAACAG 60.110 55.000 23.20 0.00 0.00 3.16
55 56 0.534203 AAAAAGCCGGCGAGAACAGA 60.534 50.000 23.20 0.00 0.00 3.41
56 57 1.228657 AAAAGCCGGCGAGAACAGAC 61.229 55.000 23.20 0.00 0.00 3.51
57 58 2.377628 AAAGCCGGCGAGAACAGACA 62.378 55.000 23.20 0.00 0.00 3.41
60 61 1.970917 GCCGGCGAGAACAGACATTG 61.971 60.000 12.58 0.00 0.00 2.82
62 63 0.716108 CGGCGAGAACAGACATTGAC 59.284 55.000 0.00 0.00 0.00 3.18
63 64 0.716108 GGCGAGAACAGACATTGACG 59.284 55.000 0.00 0.00 0.00 4.35
64 65 0.716108 GCGAGAACAGACATTGACGG 59.284 55.000 0.00 0.00 0.00 4.79
65 66 0.716108 CGAGAACAGACATTGACGGC 59.284 55.000 0.00 0.00 0.00 5.68
68 69 1.344438 AGAACAGACATTGACGGCTGA 59.656 47.619 0.00 0.00 32.86 4.26
69 70 1.728971 GAACAGACATTGACGGCTGAG 59.271 52.381 0.00 0.00 32.86 3.35
70 71 0.969149 ACAGACATTGACGGCTGAGA 59.031 50.000 0.00 0.00 32.86 3.27
71 72 1.337260 ACAGACATTGACGGCTGAGAC 60.337 52.381 0.00 0.00 32.86 3.36
72 73 0.247736 AGACATTGACGGCTGAGACC 59.752 55.000 0.00 0.00 0.00 3.85
73 74 0.741221 GACATTGACGGCTGAGACCC 60.741 60.000 0.00 0.00 0.00 4.46
82 83 4.803426 CTGAGACCCGCGTCCAGC 62.803 72.222 4.92 0.00 40.12 4.85
89 90 4.215742 CCGCGTCCAGCCGGATTA 62.216 66.667 5.05 0.00 45.33 1.75
90 91 2.960129 CGCGTCCAGCCGGATTAC 60.960 66.667 5.05 0.00 45.33 1.89
92 93 2.897207 CGTCCAGCCGGATTACCA 59.103 61.111 5.05 0.00 45.33 3.25
93 94 1.445942 CGTCCAGCCGGATTACCAT 59.554 57.895 5.05 0.00 45.33 3.55
95 96 0.600255 GTCCAGCCGGATTACCATCG 60.600 60.000 5.05 0.00 45.33 3.84
96 97 1.046472 TCCAGCCGGATTACCATCGT 61.046 55.000 5.05 0.00 35.91 3.73
99 100 0.677842 AGCCGGATTACCATCGTACC 59.322 55.000 5.05 0.00 35.59 3.34
100 101 0.320160 GCCGGATTACCATCGTACCC 60.320 60.000 5.05 0.00 35.59 3.69
103 104 1.000506 CGGATTACCATCGTACCCCTG 59.999 57.143 0.00 0.00 35.59 4.45
104 105 1.346722 GGATTACCATCGTACCCCTGG 59.653 57.143 2.33 2.33 35.97 4.45
105 106 1.346722 GATTACCATCGTACCCCTGGG 59.653 57.143 5.50 5.50 42.03 4.45
127 128 2.848694 GGGTAGGCCTATATAAACCCCC 59.151 54.545 23.88 18.69 40.62 5.40
128 129 3.534192 GGTAGGCCTATATAAACCCCCA 58.466 50.000 17.38 0.00 0.00 4.96
129 130 3.522343 GGTAGGCCTATATAAACCCCCAG 59.478 52.174 17.38 0.00 0.00 4.45
153 154 1.856629 CCCATGCAAAGGGTTGATCT 58.143 50.000 17.30 0.00 41.61 2.75
154 155 1.753073 CCCATGCAAAGGGTTGATCTC 59.247 52.381 17.30 0.00 41.61 2.75
155 156 2.622452 CCCATGCAAAGGGTTGATCTCT 60.622 50.000 17.30 0.00 41.61 3.10
156 157 3.094572 CCATGCAAAGGGTTGATCTCTT 58.905 45.455 0.00 0.00 38.72 2.85
157 158 4.272489 CCATGCAAAGGGTTGATCTCTTA 58.728 43.478 0.00 0.00 35.54 2.10
158 159 4.337555 CCATGCAAAGGGTTGATCTCTTAG 59.662 45.833 0.00 0.00 35.54 2.18
160 161 4.836825 TGCAAAGGGTTGATCTCTTAGAG 58.163 43.478 2.23 2.23 35.54 2.43
161 162 4.287067 TGCAAAGGGTTGATCTCTTAGAGT 59.713 41.667 9.25 0.00 35.54 3.24
163 164 5.707764 GCAAAGGGTTGATCTCTTAGAGTTT 59.292 40.000 9.25 0.00 35.54 2.66
164 165 6.207614 GCAAAGGGTTGATCTCTTAGAGTTTT 59.792 38.462 9.25 0.00 35.54 2.43
165 166 7.390718 GCAAAGGGTTGATCTCTTAGAGTTTTA 59.609 37.037 9.25 0.00 35.54 1.52
166 167 8.940952 CAAAGGGTTGATCTCTTAGAGTTTTAG 58.059 37.037 9.25 0.00 35.54 1.85
168 169 7.842982 AGGGTTGATCTCTTAGAGTTTTAGAC 58.157 38.462 9.25 2.72 0.00 2.59
171 172 7.546316 GGTTGATCTCTTAGAGTTTTAGACACC 59.454 40.741 9.25 3.08 0.00 4.16
172 173 7.776618 TGATCTCTTAGAGTTTTAGACACCA 57.223 36.000 9.25 0.00 0.00 4.17
173 174 7.603651 TGATCTCTTAGAGTTTTAGACACCAC 58.396 38.462 9.25 0.00 0.00 4.16
174 175 6.010294 TCTCTTAGAGTTTTAGACACCACG 57.990 41.667 9.25 0.00 0.00 4.94
176 177 6.712095 TCTCTTAGAGTTTTAGACACCACGTA 59.288 38.462 9.25 0.00 0.00 3.57
179 180 5.373981 AGAGTTTTAGACACCACGTAGAG 57.626 43.478 0.00 0.00 0.00 2.43
180 181 4.217983 AGAGTTTTAGACACCACGTAGAGG 59.782 45.833 0.00 0.00 46.17 3.69
181 182 3.257624 AGTTTTAGACACCACGTAGAGGG 59.742 47.826 0.00 0.00 44.58 4.30
182 183 2.885135 TTAGACACCACGTAGAGGGA 57.115 50.000 0.00 0.00 44.58 4.20
185 186 1.075050 AGACACCACGTAGAGGGAAGA 59.925 52.381 0.00 0.00 44.58 2.87
186 187 1.473278 GACACCACGTAGAGGGAAGAG 59.527 57.143 0.00 0.00 44.58 2.85
188 189 0.702902 ACCACGTAGAGGGAAGAGGA 59.297 55.000 0.00 0.00 44.58 3.71
189 190 1.341187 ACCACGTAGAGGGAAGAGGAG 60.341 57.143 0.00 0.00 44.58 3.69
191 192 2.294074 CACGTAGAGGGAAGAGGAGAG 58.706 57.143 0.00 0.00 0.00 3.20
192 193 1.314730 CGTAGAGGGAAGAGGAGAGC 58.685 60.000 0.00 0.00 0.00 4.09
194 195 2.105134 CGTAGAGGGAAGAGGAGAGCTA 59.895 54.545 0.00 0.00 0.00 3.32
195 196 3.751518 GTAGAGGGAAGAGGAGAGCTAG 58.248 54.545 0.00 0.00 0.00 3.42
196 197 1.133482 AGAGGGAAGAGGAGAGCTAGC 60.133 57.143 6.62 6.62 0.00 3.42
197 198 0.105709 AGGGAAGAGGAGAGCTAGCC 60.106 60.000 12.13 2.81 0.00 3.93
198 199 0.105709 GGGAAGAGGAGAGCTAGCCT 60.106 60.000 12.13 8.35 37.18 4.58
200 201 1.412343 GGAAGAGGAGAGCTAGCCTTG 59.588 57.143 12.13 0.00 33.84 3.61
202 203 1.048160 AGAGGAGAGCTAGCCTTGCC 61.048 60.000 12.13 8.23 33.84 4.52
203 204 2.038814 GAGGAGAGCTAGCCTTGCCC 62.039 65.000 12.13 6.13 33.84 5.36
204 205 2.069430 GGAGAGCTAGCCTTGCCCT 61.069 63.158 12.13 0.00 0.00 5.19
205 206 1.631071 GGAGAGCTAGCCTTGCCCTT 61.631 60.000 12.13 0.00 0.00 3.95
206 207 0.179059 GAGAGCTAGCCTTGCCCTTC 60.179 60.000 12.13 0.00 0.00 3.46
209 210 0.254462 AGCTAGCCTTGCCCTTCTTC 59.746 55.000 12.13 0.00 0.00 2.87
210 211 0.254462 GCTAGCCTTGCCCTTCTTCT 59.746 55.000 2.29 0.00 0.00 2.85
211 212 1.340502 GCTAGCCTTGCCCTTCTTCTT 60.341 52.381 2.29 0.00 0.00 2.52
212 213 2.637947 CTAGCCTTGCCCTTCTTCTTC 58.362 52.381 0.00 0.00 0.00 2.87
213 214 0.038890 AGCCTTGCCCTTCTTCTTCC 59.961 55.000 0.00 0.00 0.00 3.46
214 215 0.038890 GCCTTGCCCTTCTTCTTCCT 59.961 55.000 0.00 0.00 0.00 3.36
215 216 1.952839 GCCTTGCCCTTCTTCTTCCTC 60.953 57.143 0.00 0.00 0.00 3.71
217 218 2.840651 CCTTGCCCTTCTTCTTCCTCTA 59.159 50.000 0.00 0.00 0.00 2.43
219 220 1.834263 TGCCCTTCTTCTTCCTCTAGC 59.166 52.381 0.00 0.00 0.00 3.42
220 221 1.140052 GCCCTTCTTCTTCCTCTAGCC 59.860 57.143 0.00 0.00 0.00 3.93
221 222 2.472029 CCCTTCTTCTTCCTCTAGCCA 58.528 52.381 0.00 0.00 0.00 4.75
222 223 2.840651 CCCTTCTTCTTCCTCTAGCCAA 59.159 50.000 0.00 0.00 0.00 4.52
223 224 3.264450 CCCTTCTTCTTCCTCTAGCCAAA 59.736 47.826 0.00 0.00 0.00 3.28
225 226 4.263068 CCTTCTTCTTCCTCTAGCCAAACA 60.263 45.833 0.00 0.00 0.00 2.83
226 227 4.543590 TCTTCTTCCTCTAGCCAAACAG 57.456 45.455 0.00 0.00 0.00 3.16
227 228 2.770164 TCTTCCTCTAGCCAAACAGC 57.230 50.000 0.00 0.00 0.00 4.40
230 231 1.644509 TCCTCTAGCCAAACAGCTCA 58.355 50.000 0.00 0.00 43.67 4.26
231 232 1.977854 TCCTCTAGCCAAACAGCTCAA 59.022 47.619 0.00 0.00 43.67 3.02
232 233 2.027745 TCCTCTAGCCAAACAGCTCAAG 60.028 50.000 0.00 0.00 43.67 3.02
233 234 2.354259 CTCTAGCCAAACAGCTCAAGG 58.646 52.381 0.00 0.00 43.67 3.61
234 235 1.977854 TCTAGCCAAACAGCTCAAGGA 59.022 47.619 0.00 0.00 43.67 3.36
246 247 2.307934 CTCAAGGAGCCTCTTGTAGC 57.692 55.000 13.95 0.00 43.25 3.58
247 248 1.830477 CTCAAGGAGCCTCTTGTAGCT 59.170 52.381 13.95 0.00 43.25 3.32
249 250 2.761208 TCAAGGAGCCTCTTGTAGCTAC 59.239 50.000 17.30 17.30 43.25 3.58
250 251 2.838637 AGGAGCCTCTTGTAGCTACT 57.161 50.000 23.84 2.22 45.74 2.57
252 253 3.172229 GGAGCCTCTTGTAGCTACTTG 57.828 52.381 23.84 15.92 40.11 3.16
253 254 2.498078 GGAGCCTCTTGTAGCTACTTGT 59.502 50.000 23.84 2.74 40.11 3.16
254 255 3.516615 GAGCCTCTTGTAGCTACTTGTG 58.483 50.000 23.84 15.67 40.11 3.33
255 256 2.900546 AGCCTCTTGTAGCTACTTGTGT 59.099 45.455 23.84 1.24 37.64 3.72
258 259 4.799586 GCCTCTTGTAGCTACTTGTGTTGA 60.800 45.833 23.84 10.39 0.00 3.18
259 260 5.482908 CCTCTTGTAGCTACTTGTGTTGAT 58.517 41.667 23.84 0.00 0.00 2.57
260 261 5.578727 CCTCTTGTAGCTACTTGTGTTGATC 59.421 44.000 23.84 0.00 0.00 2.92
261 262 6.346477 TCTTGTAGCTACTTGTGTTGATCT 57.654 37.500 23.84 0.00 0.00 2.75
263 264 7.539436 TCTTGTAGCTACTTGTGTTGATCTAG 58.461 38.462 23.84 0.77 0.00 2.43
266 267 5.984695 AGCTACTTGTGTTGATCTAGTGA 57.015 39.130 0.00 0.00 0.00 3.41
268 269 6.568869 AGCTACTTGTGTTGATCTAGTGATC 58.431 40.000 0.00 0.00 46.89 2.92
278 279 3.832276 GATCTAGTGATCATGCGGAGAC 58.168 50.000 0.00 0.00 46.20 3.36
279 280 1.957177 TCTAGTGATCATGCGGAGACC 59.043 52.381 0.00 0.00 0.00 3.85
291 292 4.154347 GAGACCCCGCAGAGCAGG 62.154 72.222 0.00 0.00 0.00 4.85
292 293 4.704103 AGACCCCGCAGAGCAGGA 62.704 66.667 2.47 0.00 0.00 3.86
293 294 4.459089 GACCCCGCAGAGCAGGAC 62.459 72.222 2.47 0.00 0.00 3.85
295 296 2.759973 CCCCGCAGAGCAGGACTA 60.760 66.667 0.00 0.00 0.00 2.59
296 297 2.790791 CCCCGCAGAGCAGGACTAG 61.791 68.421 0.00 0.00 0.00 2.57
297 298 2.790791 CCCGCAGAGCAGGACTAGG 61.791 68.421 0.00 0.00 0.00 3.02
299 300 2.790791 CGCAGAGCAGGACTAGGGG 61.791 68.421 0.00 0.00 0.00 4.79
300 301 1.687493 GCAGAGCAGGACTAGGGGT 60.687 63.158 0.00 0.00 0.00 4.95
301 302 1.965754 GCAGAGCAGGACTAGGGGTG 61.966 65.000 0.00 0.00 0.00 4.61
302 303 0.616111 CAGAGCAGGACTAGGGGTGT 60.616 60.000 0.00 0.00 0.00 4.16
303 304 0.117340 AGAGCAGGACTAGGGGTGTT 59.883 55.000 0.00 0.00 0.00 3.32
304 305 1.361543 AGAGCAGGACTAGGGGTGTTA 59.638 52.381 0.00 0.00 0.00 2.41
305 306 2.022918 AGAGCAGGACTAGGGGTGTTAT 60.023 50.000 0.00 0.00 0.00 1.89
306 307 2.365941 GAGCAGGACTAGGGGTGTTATC 59.634 54.545 0.00 0.00 0.00 1.75
308 309 2.365941 GCAGGACTAGGGGTGTTATCTC 59.634 54.545 0.00 0.00 0.00 2.75
309 310 2.966516 CAGGACTAGGGGTGTTATCTCC 59.033 54.545 0.00 0.00 0.00 3.71
311 312 2.699321 GGACTAGGGGTGTTATCTCCAC 59.301 54.545 0.00 0.00 0.00 4.02
312 313 2.361438 GACTAGGGGTGTTATCTCCACG 59.639 54.545 0.00 0.00 35.94 4.94
329 330 3.787001 GGAGAGCCCCGAACCTGG 61.787 72.222 0.00 0.00 0.00 4.45
337 338 2.680066 CCCGAACCTGGGTAAGACT 58.320 57.895 0.00 0.00 44.76 3.24
338 339 0.535797 CCCGAACCTGGGTAAGACTC 59.464 60.000 0.00 0.00 44.76 3.36
339 340 0.172803 CCGAACCTGGGTAAGACTCG 59.827 60.000 0.00 4.42 32.57 4.18
340 341 0.458025 CGAACCTGGGTAAGACTCGC 60.458 60.000 0.00 0.00 0.00 5.03
341 342 0.108281 GAACCTGGGTAAGACTCGCC 60.108 60.000 0.00 0.00 0.00 5.54
342 343 1.885163 AACCTGGGTAAGACTCGCCG 61.885 60.000 0.00 0.00 0.00 6.46
344 345 3.718210 CTGGGTAAGACTCGCCGGC 62.718 68.421 19.07 19.07 0.00 6.13
346 347 4.125695 GGTAAGACTCGCCGGCGT 62.126 66.667 44.16 29.95 40.74 5.68
347 348 2.879462 GTAAGACTCGCCGGCGTG 60.879 66.667 44.16 42.04 40.74 5.34
348 349 4.789075 TAAGACTCGCCGGCGTGC 62.789 66.667 44.16 33.98 40.74 5.34
356 357 4.166011 GCCGGCGTGCATGTCTTC 62.166 66.667 12.58 0.00 0.00 2.87
357 358 3.853330 CCGGCGTGCATGTCTTCG 61.853 66.667 9.20 7.41 0.00 3.79
358 359 4.505217 CGGCGTGCATGTCTTCGC 62.505 66.667 9.20 8.80 46.42 4.70
361 362 2.680913 GCGTGCATGTCTTCGCCTT 61.681 57.895 7.93 0.00 42.33 4.35
363 364 1.290203 CGTGCATGTCTTCGCCTTAT 58.710 50.000 0.00 0.00 0.00 1.73
364 365 1.258982 CGTGCATGTCTTCGCCTTATC 59.741 52.381 0.00 0.00 0.00 1.75
365 366 1.599542 GTGCATGTCTTCGCCTTATCC 59.400 52.381 0.00 0.00 0.00 2.59
366 367 1.230324 GCATGTCTTCGCCTTATCCC 58.770 55.000 0.00 0.00 0.00 3.85
367 368 1.502231 CATGTCTTCGCCTTATCCCG 58.498 55.000 0.00 0.00 0.00 5.14
368 369 1.120530 ATGTCTTCGCCTTATCCCGT 58.879 50.000 0.00 0.00 0.00 5.28
370 371 1.276989 TGTCTTCGCCTTATCCCGTTT 59.723 47.619 0.00 0.00 0.00 3.60
371 372 1.931841 GTCTTCGCCTTATCCCGTTTC 59.068 52.381 0.00 0.00 0.00 2.78
373 374 0.614294 TTCGCCTTATCCCGTTTCCA 59.386 50.000 0.00 0.00 0.00 3.53
374 375 0.177141 TCGCCTTATCCCGTTTCCAG 59.823 55.000 0.00 0.00 0.00 3.86
375 376 0.177141 CGCCTTATCCCGTTTCCAGA 59.823 55.000 0.00 0.00 0.00 3.86
376 377 1.664873 GCCTTATCCCGTTTCCAGAC 58.335 55.000 0.00 0.00 0.00 3.51
377 378 1.065709 GCCTTATCCCGTTTCCAGACA 60.066 52.381 0.00 0.00 0.00 3.41
378 379 2.629051 CCTTATCCCGTTTCCAGACAC 58.371 52.381 0.00 0.00 0.00 3.67
379 380 2.629051 CTTATCCCGTTTCCAGACACC 58.371 52.381 0.00 0.00 0.00 4.16
382 383 3.047877 CCGTTTCCAGACACCGGC 61.048 66.667 0.00 0.00 0.00 6.13
383 384 3.411351 CGTTTCCAGACACCGGCG 61.411 66.667 0.00 0.00 0.00 6.46
386 387 1.375396 TTTCCAGACACCGGCGATG 60.375 57.895 9.30 2.86 0.00 3.84
387 388 3.950794 TTCCAGACACCGGCGATGC 62.951 63.158 9.30 0.00 0.00 3.91
409 410 3.136443 CCTTACTGGCTCCCACAATGATA 59.864 47.826 0.00 0.00 0.00 2.15
411 412 3.287867 ACTGGCTCCCACAATGATAAG 57.712 47.619 0.00 0.00 0.00 1.73
412 413 1.952296 CTGGCTCCCACAATGATAAGC 59.048 52.381 0.00 0.00 0.00 3.09
413 414 1.322442 GGCTCCCACAATGATAAGCC 58.678 55.000 0.00 0.00 42.17 4.35
415 416 2.590821 GCTCCCACAATGATAAGCCAT 58.409 47.619 0.00 0.00 0.00 4.40
416 417 2.555757 GCTCCCACAATGATAAGCCATC 59.444 50.000 0.00 0.00 0.00 3.51
417 418 3.152341 CTCCCACAATGATAAGCCATCC 58.848 50.000 0.00 0.00 32.09 3.51
420 421 2.951642 CCACAATGATAAGCCATCCGTT 59.048 45.455 0.00 0.00 32.09 4.44
421 422 3.243168 CCACAATGATAAGCCATCCGTTG 60.243 47.826 0.00 0.00 35.74 4.10
432 433 0.235665 CATCCGTTGGCATATGTCGC 59.764 55.000 2.28 0.00 0.00 5.19
434 435 1.087202 TCCGTTGGCATATGTCGCAC 61.087 55.000 2.28 1.18 0.00 5.34
435 436 1.351707 CGTTGGCATATGTCGCACC 59.648 57.895 2.28 0.00 0.00 5.01
436 437 1.089481 CGTTGGCATATGTCGCACCT 61.089 55.000 2.28 0.00 0.00 4.00
437 438 1.804746 CGTTGGCATATGTCGCACCTA 60.805 52.381 2.28 0.00 0.00 3.08
438 439 1.597663 GTTGGCATATGTCGCACCTAC 59.402 52.381 2.28 0.00 0.00 3.18
439 440 0.105964 TGGCATATGTCGCACCTACC 59.894 55.000 2.28 0.00 0.00 3.18
440 441 0.105964 GGCATATGTCGCACCTACCA 59.894 55.000 4.29 0.00 0.00 3.25
441 442 1.217882 GCATATGTCGCACCTACCAC 58.782 55.000 4.29 0.00 0.00 4.16
442 443 1.865865 CATATGTCGCACCTACCACC 58.134 55.000 0.00 0.00 0.00 4.61
443 444 0.756903 ATATGTCGCACCTACCACCC 59.243 55.000 0.00 0.00 0.00 4.61
444 445 1.669049 TATGTCGCACCTACCACCCG 61.669 60.000 0.00 0.00 0.00 5.28
445 446 3.376078 GTCGCACCTACCACCCGA 61.376 66.667 0.00 0.00 0.00 5.14
447 448 3.687102 CGCACCTACCACCCGACA 61.687 66.667 0.00 0.00 0.00 4.35
448 449 2.047560 GCACCTACCACCCGACAC 60.048 66.667 0.00 0.00 0.00 3.67
450 451 1.292223 CACCTACCACCCGACACTG 59.708 63.158 0.00 0.00 0.00 3.66
451 452 2.264794 CCTACCACCCGACACTGC 59.735 66.667 0.00 0.00 0.00 4.40
452 453 2.579657 CCTACCACCCGACACTGCA 61.580 63.158 0.00 0.00 0.00 4.41
454 455 0.670546 CTACCACCCGACACTGCAAG 60.671 60.000 0.00 0.00 42.29 4.01
455 456 2.107041 TACCACCCGACACTGCAAGG 62.107 60.000 0.00 0.00 39.30 3.61
456 457 3.357079 CACCCGACACTGCAAGGC 61.357 66.667 0.00 0.00 39.30 4.35
458 459 3.052082 CCCGACACTGCAAGGCTG 61.052 66.667 0.00 0.00 39.30 4.85
459 460 3.052082 CCGACACTGCAAGGCTGG 61.052 66.667 0.00 0.00 39.30 4.85
460 461 3.052082 CGACACTGCAAGGCTGGG 61.052 66.667 0.00 0.00 39.30 4.45
461 462 3.368571 GACACTGCAAGGCTGGGC 61.369 66.667 4.59 4.59 39.30 5.36
473 474 2.438434 CTGGGCCAGGCGGTAAAG 60.438 66.667 26.34 0.00 33.28 1.85
474 475 3.995506 CTGGGCCAGGCGGTAAAGG 62.996 68.421 26.34 0.00 33.28 3.11
475 476 3.723922 GGGCCAGGCGGTAAAGGA 61.724 66.667 4.39 0.00 33.28 3.36
476 477 2.124695 GGCCAGGCGGTAAAGGAG 60.125 66.667 5.00 0.00 33.28 3.69
477 478 2.124695 GCCAGGCGGTAAAGGAGG 60.125 66.667 0.00 0.00 33.28 4.30
478 479 2.124695 CCAGGCGGTAAAGGAGGC 60.125 66.667 0.00 0.00 0.00 4.70
479 480 2.124695 CAGGCGGTAAAGGAGGCC 60.125 66.667 0.00 0.00 45.91 5.19
480 481 3.408853 AGGCGGTAAAGGAGGCCC 61.409 66.667 0.00 0.00 46.75 5.80
481 482 4.851179 GGCGGTAAAGGAGGCCCG 62.851 72.222 0.00 0.00 43.22 6.13
483 484 4.090588 CGGTAAAGGAGGCCCGCA 62.091 66.667 0.00 0.00 37.58 5.69
484 485 2.437895 GGTAAAGGAGGCCCGCAC 60.438 66.667 0.00 0.00 37.58 5.34
485 486 2.349755 GTAAAGGAGGCCCGCACA 59.650 61.111 0.00 0.00 37.58 4.57
486 487 1.077716 GTAAAGGAGGCCCGCACAT 60.078 57.895 0.00 0.00 37.58 3.21
487 488 1.095807 GTAAAGGAGGCCCGCACATC 61.096 60.000 0.00 0.00 37.58 3.06
489 490 2.215451 AAAGGAGGCCCGCACATCAT 62.215 55.000 0.00 0.00 37.58 2.45
490 491 2.592861 GGAGGCCCGCACATCATC 60.593 66.667 0.00 0.00 0.00 2.92
491 492 2.592861 GAGGCCCGCACATCATCC 60.593 66.667 0.00 0.00 0.00 3.51
495 496 2.475466 GCCCGCACATCATCCACTG 61.475 63.158 0.00 0.00 0.00 3.66
496 497 1.221566 CCCGCACATCATCCACTGA 59.778 57.895 0.00 0.00 38.53 3.41
497 498 0.392863 CCCGCACATCATCCACTGAA 60.393 55.000 0.00 0.00 37.44 3.02
498 499 1.012086 CCGCACATCATCCACTGAAG 58.988 55.000 0.00 0.00 37.44 3.02
499 500 0.376152 CGCACATCATCCACTGAAGC 59.624 55.000 0.00 0.00 37.44 3.86
502 503 2.429478 CACATCATCCACTGAAGCACA 58.571 47.619 0.00 0.00 37.44 4.57
503 504 2.161012 CACATCATCCACTGAAGCACAC 59.839 50.000 0.00 0.00 37.44 3.82
504 505 2.224597 ACATCATCCACTGAAGCACACA 60.225 45.455 0.00 0.00 37.44 3.72
505 506 2.636647 TCATCCACTGAAGCACACAA 57.363 45.000 0.00 0.00 0.00 3.33
506 507 2.497138 TCATCCACTGAAGCACACAAG 58.503 47.619 0.00 0.00 0.00 3.16
507 508 1.068748 CATCCACTGAAGCACACAAGC 60.069 52.381 0.00 0.00 0.00 4.01
508 509 0.107263 TCCACTGAAGCACACAAGCA 60.107 50.000 0.00 0.00 36.85 3.91
510 511 2.153645 CCACTGAAGCACACAAGCATA 58.846 47.619 0.00 0.00 36.85 3.14
511 512 2.553602 CCACTGAAGCACACAAGCATAA 59.446 45.455 0.00 0.00 36.85 1.90
512 513 3.558505 CACTGAAGCACACAAGCATAAC 58.441 45.455 0.00 0.00 36.85 1.89
513 514 2.224079 ACTGAAGCACACAAGCATAACG 59.776 45.455 0.00 0.00 36.85 3.18
514 515 2.217750 TGAAGCACACAAGCATAACGT 58.782 42.857 0.00 0.00 36.85 3.99
515 516 2.032117 TGAAGCACACAAGCATAACGTG 60.032 45.455 0.00 0.00 36.85 4.49
516 517 1.593196 AGCACACAAGCATAACGTGT 58.407 45.000 0.00 0.00 44.45 4.49
517 518 2.761559 AGCACACAAGCATAACGTGTA 58.238 42.857 0.00 0.00 41.79 2.90
518 519 2.736721 AGCACACAAGCATAACGTGTAG 59.263 45.455 0.00 0.00 41.79 2.74
519 520 2.734606 GCACACAAGCATAACGTGTAGA 59.265 45.455 0.00 0.00 41.79 2.59
520 521 3.181530 GCACACAAGCATAACGTGTAGAG 60.182 47.826 0.00 0.00 41.79 2.43
521 522 3.987868 CACACAAGCATAACGTGTAGAGT 59.012 43.478 0.00 0.00 41.79 3.24
522 523 5.158494 CACACAAGCATAACGTGTAGAGTA 58.842 41.667 0.00 0.00 41.79 2.59
523 524 5.631929 CACACAAGCATAACGTGTAGAGTAA 59.368 40.000 0.00 0.00 41.79 2.24
524 525 5.632347 ACACAAGCATAACGTGTAGAGTAAC 59.368 40.000 0.00 0.00 41.90 2.50
527 528 3.691118 AGCATAACGTGTAGAGTAACCGA 59.309 43.478 0.00 0.00 0.00 4.69
529 530 2.997485 AACGTGTAGAGTAACCGACC 57.003 50.000 0.00 0.00 0.00 4.79
530 531 0.798776 ACGTGTAGAGTAACCGACCG 59.201 55.000 0.00 0.00 0.00 4.79
531 532 0.097674 CGTGTAGAGTAACCGACCGG 59.902 60.000 6.94 6.94 42.03 5.28
543 544 2.849880 CCGACCGGTTTTATACGAGA 57.150 50.000 9.42 0.00 0.00 4.04
544 545 3.149436 CCGACCGGTTTTATACGAGAA 57.851 47.619 9.42 0.00 0.00 2.87
546 547 4.114794 CCGACCGGTTTTATACGAGAAAT 58.885 43.478 9.42 0.00 0.00 2.17
547 548 4.026310 CCGACCGGTTTTATACGAGAAATG 60.026 45.833 9.42 0.00 0.00 2.32
550 551 6.019318 CGACCGGTTTTATACGAGAAATGAAT 60.019 38.462 9.42 0.00 0.00 2.57
553 554 9.165035 ACCGGTTTTATACGAGAAATGAATAAA 57.835 29.630 0.00 0.00 0.00 1.40
554 555 9.991388 CCGGTTTTATACGAGAAATGAATAAAA 57.009 29.630 0.00 0.00 32.45 1.52
615 616 1.594331 GCCTACGATTGGATTGGACC 58.406 55.000 0.00 0.00 0.00 4.46
706 712 2.798148 ATTCGTCAACCGCCTCCCAC 62.798 60.000 0.00 0.00 36.19 4.61
1229 4001 2.404566 TTTCTTGCCGCACTAGCCCA 62.405 55.000 0.00 0.00 37.52 5.36
1587 4359 2.502213 ACGGCTGTTTTAAACAAGGC 57.498 45.000 11.80 15.03 41.61 4.35
1618 4390 1.661341 AGCGTGCAATCTCTTCCATC 58.339 50.000 0.00 0.00 0.00 3.51
1648 4420 4.105697 TCCAACTGGGAGTTCAACCTAATT 59.894 41.667 0.00 0.00 42.15 1.40
1864 4636 2.263077 GTGTTCTACCAGATGCTGTCG 58.737 52.381 0.00 0.00 0.00 4.35
2221 4993 2.896685 TCACTTTGCAAAATGGGTAGGG 59.103 45.455 19.53 4.41 0.00 3.53
2274 5046 2.820197 GGTCAATCAAGGAGTTTCACCC 59.180 50.000 0.00 0.00 0.00 4.61
2317 5089 2.303022 CTGGTTCTGGGTTCTTGCTCTA 59.697 50.000 0.00 0.00 0.00 2.43
2388 5160 5.138276 AGAGGTCTGTGTTCTAACAGTGTA 58.862 41.667 0.00 0.00 46.33 2.90
2416 5188 9.042450 TCTTCTATCCTGTAATAAACAACCTGA 57.958 33.333 0.00 0.00 37.74 3.86
2439 5211 3.829026 GCAAAGAAGGAAAGGTGAAGGAT 59.171 43.478 0.00 0.00 0.00 3.24
2466 5238 7.025365 CACAGGATATGTTTGACTTCATTGTG 58.975 38.462 0.00 0.00 41.41 3.33
2478 5250 3.244770 ACTTCATTGTGGGTATTGGTCGT 60.245 43.478 0.00 0.00 0.00 4.34
2480 5252 2.014128 CATTGTGGGTATTGGTCGTCC 58.986 52.381 0.00 0.00 0.00 4.79
2490 5262 2.107041 TTGGTCGTCCGCCTGATGTT 62.107 55.000 0.00 0.00 36.30 2.71
2862 5635 2.624316 ACAATTGCACTGATGAAGCG 57.376 45.000 5.05 0.00 0.00 4.68
2937 5710 7.414222 AACAATCAATACCATGATTTCTGCT 57.586 32.000 0.00 0.00 45.39 4.24
3207 5980 4.404507 TCTCGCTAAACTTGATGCAAAC 57.595 40.909 0.00 0.00 0.00 2.93
3237 6010 6.128145 TGTCACTTGAAGTTTCAACGATTTCA 60.128 34.615 0.00 0.00 41.88 2.69
3871 6705 6.238320 GCCTCTCTCAACAATAGTGCTAATTG 60.238 42.308 0.00 5.16 0.00 2.32
3876 6712 7.816640 TCTCAACAATAGTGCTAATTGTTTCC 58.183 34.615 16.70 0.00 43.47 3.13
3926 6798 9.220767 ACTGTGTTTTCATCTAAAATCTACTCC 57.779 33.333 0.00 0.00 39.22 3.85
3927 6799 8.561738 TGTGTTTTCATCTAAAATCTACTCCC 57.438 34.615 0.00 0.00 39.22 4.30
3928 6800 8.383175 TGTGTTTTCATCTAAAATCTACTCCCT 58.617 33.333 0.00 0.00 39.22 4.20
3929 6801 8.884726 GTGTTTTCATCTAAAATCTACTCCCTC 58.115 37.037 0.00 0.00 39.22 4.30
3930 6802 8.047310 TGTTTTCATCTAAAATCTACTCCCTCC 58.953 37.037 0.00 0.00 39.22 4.30
3931 6803 6.406692 TTCATCTAAAATCTACTCCCTCCG 57.593 41.667 0.00 0.00 0.00 4.63
3932 6804 5.455872 TCATCTAAAATCTACTCCCTCCGT 58.544 41.667 0.00 0.00 0.00 4.69
3933 6805 5.897824 TCATCTAAAATCTACTCCCTCCGTT 59.102 40.000 0.00 0.00 0.00 4.44
3934 6806 5.848833 TCTAAAATCTACTCCCTCCGTTC 57.151 43.478 0.00 0.00 0.00 3.95
3935 6807 3.908643 AAAATCTACTCCCTCCGTTCC 57.091 47.619 0.00 0.00 0.00 3.62
3936 6808 1.790818 AATCTACTCCCTCCGTTCCC 58.209 55.000 0.00 0.00 0.00 3.97
3937 6809 0.635009 ATCTACTCCCTCCGTTCCCA 59.365 55.000 0.00 0.00 0.00 4.37
3938 6810 0.410663 TCTACTCCCTCCGTTCCCAA 59.589 55.000 0.00 0.00 0.00 4.12
3939 6811 1.203212 TCTACTCCCTCCGTTCCCAAA 60.203 52.381 0.00 0.00 0.00 3.28
3940 6812 1.838077 CTACTCCCTCCGTTCCCAAAT 59.162 52.381 0.00 0.00 0.00 2.32
3941 6813 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3942 6814 2.488836 ACTCCCTCCGTTCCCAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
3943 6815 3.660959 ACTCCCTCCGTTCCCAAATATA 58.339 45.455 0.00 0.00 0.00 0.86
3944 6816 4.042174 ACTCCCTCCGTTCCCAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
3945 6817 4.102681 ACTCCCTCCGTTCCCAAATATAAG 59.897 45.833 0.00 0.00 0.00 1.73
3946 6818 4.042174 TCCCTCCGTTCCCAAATATAAGT 58.958 43.478 0.00 0.00 0.00 2.24
3947 6819 4.102054 TCCCTCCGTTCCCAAATATAAGTC 59.898 45.833 0.00 0.00 0.00 3.01
3948 6820 4.102681 CCCTCCGTTCCCAAATATAAGTCT 59.897 45.833 0.00 0.00 0.00 3.24
3949 6821 5.397559 CCCTCCGTTCCCAAATATAAGTCTT 60.398 44.000 0.00 0.00 0.00 3.01
3950 6822 6.120220 CCTCCGTTCCCAAATATAAGTCTTT 58.880 40.000 0.00 0.00 0.00 2.52
3951 6823 6.260271 CCTCCGTTCCCAAATATAAGTCTTTC 59.740 42.308 0.00 0.00 0.00 2.62
3952 6824 6.954232 TCCGTTCCCAAATATAAGTCTTTCT 58.046 36.000 0.00 0.00 0.00 2.52
3953 6825 8.081517 TCCGTTCCCAAATATAAGTCTTTCTA 57.918 34.615 0.00 0.00 0.00 2.10
3954 6826 8.202137 TCCGTTCCCAAATATAAGTCTTTCTAG 58.798 37.037 0.00 0.00 0.00 2.43
3955 6827 8.202137 CCGTTCCCAAATATAAGTCTTTCTAGA 58.798 37.037 0.00 0.00 0.00 2.43
3956 6828 9.250624 CGTTCCCAAATATAAGTCTTTCTAGAG 57.749 37.037 0.00 0.00 0.00 2.43
3969 6841 8.600449 AGTCTTTCTAGAGATTTCAACAAGTG 57.400 34.615 0.00 0.00 0.00 3.16
3970 6842 8.424918 AGTCTTTCTAGAGATTTCAACAAGTGA 58.575 33.333 0.00 0.00 0.00 3.41
3971 6843 9.213799 GTCTTTCTAGAGATTTCAACAAGTGAT 57.786 33.333 0.00 0.00 35.70 3.06
3972 6844 9.784531 TCTTTCTAGAGATTTCAACAAGTGATT 57.215 29.630 0.00 0.00 35.70 2.57
3979 6851 8.554528 AGAGATTTCAACAAGTGATTATATGCG 58.445 33.333 0.00 0.00 35.70 4.73
3980 6852 7.642669 AGATTTCAACAAGTGATTATATGCGG 58.357 34.615 0.00 0.00 35.70 5.69
3981 6853 6.993786 TTTCAACAAGTGATTATATGCGGA 57.006 33.333 0.00 0.00 35.70 5.54
3982 6854 6.993786 TTCAACAAGTGATTATATGCGGAA 57.006 33.333 0.00 0.00 35.70 4.30
3983 6855 6.358118 TCAACAAGTGATTATATGCGGAAC 57.642 37.500 0.00 0.00 0.00 3.62
3984 6856 5.877564 TCAACAAGTGATTATATGCGGAACA 59.122 36.000 0.00 0.00 0.00 3.18
3985 6857 6.372937 TCAACAAGTGATTATATGCGGAACAA 59.627 34.615 0.00 0.00 0.00 2.83
3986 6858 6.751514 ACAAGTGATTATATGCGGAACAAA 57.248 33.333 0.00 0.00 0.00 2.83
3987 6859 7.151999 ACAAGTGATTATATGCGGAACAAAA 57.848 32.000 0.00 0.00 0.00 2.44
3988 6860 7.771183 ACAAGTGATTATATGCGGAACAAAAT 58.229 30.769 0.00 0.00 0.00 1.82
3989 6861 7.701924 ACAAGTGATTATATGCGGAACAAAATG 59.298 33.333 0.00 0.00 0.00 2.32
3990 6862 7.566760 AGTGATTATATGCGGAACAAAATGA 57.433 32.000 0.00 0.00 0.00 2.57
3991 6863 7.642669 AGTGATTATATGCGGAACAAAATGAG 58.357 34.615 0.00 0.00 0.00 2.90
3992 6864 7.283127 AGTGATTATATGCGGAACAAAATGAGT 59.717 33.333 0.00 0.00 0.00 3.41
3993 6865 7.376866 GTGATTATATGCGGAACAAAATGAGTG 59.623 37.037 0.00 0.00 0.00 3.51
3994 6866 6.993786 TTATATGCGGAACAAAATGAGTGA 57.006 33.333 0.00 0.00 0.00 3.41
3995 6867 5.895636 ATATGCGGAACAAAATGAGTGAA 57.104 34.783 0.00 0.00 0.00 3.18
3996 6868 4.789012 ATGCGGAACAAAATGAGTGAAT 57.211 36.364 0.00 0.00 0.00 2.57
3997 6869 4.159377 TGCGGAACAAAATGAGTGAATC 57.841 40.909 0.00 0.00 0.00 2.52
3998 6870 3.820467 TGCGGAACAAAATGAGTGAATCT 59.180 39.130 0.00 0.00 0.00 2.40
3999 6871 5.000591 TGCGGAACAAAATGAGTGAATCTA 58.999 37.500 0.00 0.00 0.00 1.98
4000 6872 5.106712 TGCGGAACAAAATGAGTGAATCTAC 60.107 40.000 0.00 0.00 0.00 2.59
4001 6873 5.106712 GCGGAACAAAATGAGTGAATCTACA 60.107 40.000 0.00 0.00 0.00 2.74
4002 6874 6.403636 GCGGAACAAAATGAGTGAATCTACAT 60.404 38.462 0.00 0.00 0.00 2.29
4003 6875 7.530010 CGGAACAAAATGAGTGAATCTACATT 58.470 34.615 0.00 0.00 34.99 2.71
4004 6876 7.693951 CGGAACAAAATGAGTGAATCTACATTC 59.306 37.037 0.00 0.00 39.24 2.67
4005 6877 8.734386 GGAACAAAATGAGTGAATCTACATTCT 58.266 33.333 0.00 0.00 39.49 2.40
4041 6913 5.838529 CATACATCCGTATGTTGTAGTCCA 58.161 41.667 0.00 0.00 46.70 4.02
4042 6914 6.455647 CATACATCCGTATGTTGTAGTCCAT 58.544 40.000 0.00 0.00 46.70 3.41
4043 6915 5.353394 ACATCCGTATGTTGTAGTCCATT 57.647 39.130 0.00 0.00 44.07 3.16
4044 6916 5.741011 ACATCCGTATGTTGTAGTCCATTT 58.259 37.500 0.00 0.00 44.07 2.32
4045 6917 6.880484 ACATCCGTATGTTGTAGTCCATTTA 58.120 36.000 0.00 0.00 44.07 1.40
4046 6918 7.332557 ACATCCGTATGTTGTAGTCCATTTAA 58.667 34.615 0.00 0.00 44.07 1.52
4047 6919 7.825270 ACATCCGTATGTTGTAGTCCATTTAAA 59.175 33.333 0.00 0.00 44.07 1.52
4048 6920 8.670135 CATCCGTATGTTGTAGTCCATTTAAAA 58.330 33.333 0.00 0.00 0.00 1.52
4049 6921 8.795842 TCCGTATGTTGTAGTCCATTTAAAAT 57.204 30.769 0.00 0.00 0.00 1.82
4050 6922 8.670135 TCCGTATGTTGTAGTCCATTTAAAATG 58.330 33.333 0.00 0.00 0.00 2.32
4051 6923 8.455682 CCGTATGTTGTAGTCCATTTAAAATGT 58.544 33.333 0.00 0.00 0.00 2.71
4052 6924 9.485591 CGTATGTTGTAGTCCATTTAAAATGTC 57.514 33.333 0.00 0.00 0.00 3.06
4062 6934 8.870116 AGTCCATTTAAAATGTCTAAAAAGGCT 58.130 29.630 0.00 0.00 0.00 4.58
4063 6935 9.489084 GTCCATTTAAAATGTCTAAAAAGGCTT 57.511 29.630 0.00 0.00 0.00 4.35
4080 6952 8.712228 AAAAGGCTTATATTTAGGAATGGAGG 57.288 34.615 0.00 0.00 0.00 4.30
4081 6953 6.394345 AGGCTTATATTTAGGAATGGAGGG 57.606 41.667 0.00 0.00 0.00 4.30
4082 6954 6.098446 AGGCTTATATTTAGGAATGGAGGGA 58.902 40.000 0.00 0.00 0.00 4.20
4083 6955 6.216456 AGGCTTATATTTAGGAATGGAGGGAG 59.784 42.308 0.00 0.00 0.00 4.30
4096 6968 2.663196 GGGAGTAGTTGCCTGCGT 59.337 61.111 0.00 0.00 33.76 5.24
4099 6971 1.356938 GGAGTAGTTGCCTGCGTTAC 58.643 55.000 0.00 0.00 0.00 2.50
4133 7007 6.815641 AGTTAGTAATCTGATGTTCTGTGCTG 59.184 38.462 0.00 0.00 0.00 4.41
4243 7119 8.730427 CGGTAAGAAATATTTGCGTTTATTCAC 58.270 33.333 5.17 0.00 0.00 3.18
4276 7152 7.551585 ACTAACTGACTAATCATGAACAGAGG 58.448 38.462 17.39 11.55 33.22 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.439472 CTTTTTCGCCGACCGCCG 62.439 66.667 0.00 0.00 36.73 6.46
25 26 4.753877 GCTTTTTCGCCGACCGCC 62.754 66.667 0.00 0.00 36.73 6.13
32 33 4.460873 CTCGCCGGCTTTTTCGCC 62.461 66.667 26.68 0.00 46.68 5.54
33 34 2.961669 TTCTCGCCGGCTTTTTCGC 61.962 57.895 26.68 0.00 0.00 4.70
34 35 1.154469 GTTCTCGCCGGCTTTTTCG 60.154 57.895 26.68 7.77 0.00 3.46
35 36 0.110192 CTGTTCTCGCCGGCTTTTTC 60.110 55.000 26.68 12.51 0.00 2.29
36 37 0.534203 TCTGTTCTCGCCGGCTTTTT 60.534 50.000 26.68 0.00 0.00 1.94
37 38 1.070786 TCTGTTCTCGCCGGCTTTT 59.929 52.632 26.68 0.00 0.00 2.27
38 39 1.668151 GTCTGTTCTCGCCGGCTTT 60.668 57.895 26.68 0.00 0.00 3.51
39 40 2.048127 GTCTGTTCTCGCCGGCTT 60.048 61.111 26.68 0.00 0.00 4.35
42 43 0.389817 TCAATGTCTGTTCTCGCCGG 60.390 55.000 0.00 0.00 0.00 6.13
43 44 0.716108 GTCAATGTCTGTTCTCGCCG 59.284 55.000 0.00 0.00 0.00 6.46
45 46 0.716108 CCGTCAATGTCTGTTCTCGC 59.284 55.000 0.00 0.00 0.00 5.03
46 47 0.716108 GCCGTCAATGTCTGTTCTCG 59.284 55.000 0.00 0.00 0.00 4.04
49 50 1.728971 CTCAGCCGTCAATGTCTGTTC 59.271 52.381 0.00 0.00 0.00 3.18
50 51 1.344438 TCTCAGCCGTCAATGTCTGTT 59.656 47.619 0.00 0.00 0.00 3.16
52 53 1.354040 GTCTCAGCCGTCAATGTCTG 58.646 55.000 0.00 0.00 0.00 3.51
54 55 0.741221 GGGTCTCAGCCGTCAATGTC 60.741 60.000 0.00 0.00 0.00 3.06
55 56 1.296715 GGGTCTCAGCCGTCAATGT 59.703 57.895 0.00 0.00 0.00 2.71
56 57 4.208632 GGGTCTCAGCCGTCAATG 57.791 61.111 0.00 0.00 0.00 2.82
64 65 4.803426 CTGGACGCGGGTCTCAGC 62.803 72.222 28.74 14.74 42.97 4.26
65 66 4.803426 GCTGGACGCGGGTCTCAG 62.803 72.222 29.71 29.71 42.97 3.35
78 79 0.677288 TACGATGGTAATCCGGCTGG 59.323 55.000 4.71 4.71 36.30 4.85
80 81 0.677842 GGTACGATGGTAATCCGGCT 59.322 55.000 0.00 0.00 36.30 5.52
82 83 0.319405 GGGGTACGATGGTAATCCGG 59.681 60.000 0.00 0.00 36.30 5.14
83 84 1.000506 CAGGGGTACGATGGTAATCCG 59.999 57.143 0.00 0.00 36.30 4.18
84 85 1.346722 CCAGGGGTACGATGGTAATCC 59.653 57.143 0.00 0.00 0.00 3.01
85 86 1.346722 CCCAGGGGTACGATGGTAATC 59.653 57.143 0.00 0.00 31.85 1.75
86 87 1.430992 CCCAGGGGTACGATGGTAAT 58.569 55.000 0.00 0.00 31.85 1.89
87 88 0.691748 CCCCAGGGGTACGATGGTAA 60.692 60.000 18.09 0.00 38.25 2.85
89 90 2.366435 CCCCAGGGGTACGATGGT 60.366 66.667 18.09 0.00 38.25 3.55
104 105 2.848694 GGGTTTATATAGGCCTACCCCC 59.151 54.545 23.88 17.51 39.42 5.40
106 107 2.848694 GGGGGTTTATATAGGCCTACCC 59.151 54.545 25.63 25.63 43.59 3.69
107 108 3.522343 CTGGGGGTTTATATAGGCCTACC 59.478 52.174 16.61 13.48 0.00 3.18
108 109 3.522343 CCTGGGGGTTTATATAGGCCTAC 59.478 52.174 16.61 3.08 0.00 3.18
109 110 3.507166 CCCTGGGGGTTTATATAGGCCTA 60.507 52.174 16.60 16.60 38.25 3.93
110 111 2.644151 CCTGGGGGTTTATATAGGCCT 58.356 52.381 11.78 11.78 0.00 5.19
111 112 1.639108 CCCTGGGGGTTTATATAGGCC 59.361 57.143 4.27 0.00 38.25 5.19
113 114 2.041216 GTGCCCTGGGGGTTTATATAGG 59.959 54.545 16.03 0.00 46.51 2.57
114 115 2.041216 GGTGCCCTGGGGGTTTATATAG 59.959 54.545 16.03 0.00 46.51 1.31
115 116 2.067386 GGTGCCCTGGGGGTTTATATA 58.933 52.381 16.03 0.00 46.51 0.86
117 118 1.290720 GGGTGCCCTGGGGGTTTATA 61.291 60.000 16.03 0.00 46.51 0.98
119 120 3.269632 GGGTGCCCTGGGGGTTTA 61.270 66.667 16.03 0.00 46.51 2.01
135 136 2.731572 AGAGATCAACCCTTTGCATGG 58.268 47.619 0.00 0.00 32.17 3.66
136 137 5.188434 TCTAAGAGATCAACCCTTTGCATG 58.812 41.667 0.00 0.00 32.17 4.06
137 138 5.045286 ACTCTAAGAGATCAACCCTTTGCAT 60.045 40.000 0.00 0.00 33.32 3.96
138 139 4.287067 ACTCTAAGAGATCAACCCTTTGCA 59.713 41.667 0.00 0.00 33.32 4.08
139 140 4.837972 ACTCTAAGAGATCAACCCTTTGC 58.162 43.478 0.00 0.00 33.32 3.68
140 141 7.751768 AAAACTCTAAGAGATCAACCCTTTG 57.248 36.000 0.00 0.00 33.32 2.77
141 142 8.881262 TCTAAAACTCTAAGAGATCAACCCTTT 58.119 33.333 0.00 0.00 33.32 3.11
142 143 8.315482 GTCTAAAACTCTAAGAGATCAACCCTT 58.685 37.037 0.00 0.00 33.32 3.95
143 144 7.455008 TGTCTAAAACTCTAAGAGATCAACCCT 59.545 37.037 0.00 0.00 33.32 4.34
144 145 7.546316 GTGTCTAAAACTCTAAGAGATCAACCC 59.454 40.741 0.00 0.00 33.32 4.11
145 146 7.546316 GGTGTCTAAAACTCTAAGAGATCAACC 59.454 40.741 0.00 0.00 33.32 3.77
146 147 8.088981 TGGTGTCTAAAACTCTAAGAGATCAAC 58.911 37.037 0.00 0.00 33.32 3.18
147 148 8.088981 GTGGTGTCTAAAACTCTAAGAGATCAA 58.911 37.037 0.00 0.00 33.32 2.57
148 149 7.575155 CGTGGTGTCTAAAACTCTAAGAGATCA 60.575 40.741 0.00 0.00 33.32 2.92
150 151 6.208994 ACGTGGTGTCTAAAACTCTAAGAGAT 59.791 38.462 0.00 0.00 33.32 2.75
152 153 5.770417 ACGTGGTGTCTAAAACTCTAAGAG 58.230 41.667 0.00 0.00 35.52 2.85
153 154 5.779529 ACGTGGTGTCTAAAACTCTAAGA 57.220 39.130 0.00 0.00 0.00 2.10
154 155 6.906659 TCTACGTGGTGTCTAAAACTCTAAG 58.093 40.000 0.00 0.00 0.00 2.18
155 156 6.072286 CCTCTACGTGGTGTCTAAAACTCTAA 60.072 42.308 0.00 0.00 0.00 2.10
156 157 5.413833 CCTCTACGTGGTGTCTAAAACTCTA 59.586 44.000 0.00 0.00 0.00 2.43
157 158 4.217983 CCTCTACGTGGTGTCTAAAACTCT 59.782 45.833 0.00 0.00 0.00 3.24
158 159 4.483311 CCTCTACGTGGTGTCTAAAACTC 58.517 47.826 0.00 0.00 0.00 3.01
160 161 3.256631 TCCCTCTACGTGGTGTCTAAAAC 59.743 47.826 0.00 0.00 0.00 2.43
161 162 3.499338 TCCCTCTACGTGGTGTCTAAAA 58.501 45.455 0.00 0.00 0.00 1.52
163 164 2.885135 TCCCTCTACGTGGTGTCTAA 57.115 50.000 0.00 0.00 0.00 2.10
164 165 2.306805 TCTTCCCTCTACGTGGTGTCTA 59.693 50.000 0.00 0.00 0.00 2.59
165 166 1.075050 TCTTCCCTCTACGTGGTGTCT 59.925 52.381 0.00 0.00 0.00 3.41
166 167 1.473278 CTCTTCCCTCTACGTGGTGTC 59.527 57.143 0.00 0.00 0.00 3.67
168 169 0.818296 CCTCTTCCCTCTACGTGGTG 59.182 60.000 0.00 0.00 0.00 4.17
171 172 2.294074 CTCTCCTCTTCCCTCTACGTG 58.706 57.143 0.00 0.00 0.00 4.49
172 173 1.409101 GCTCTCCTCTTCCCTCTACGT 60.409 57.143 0.00 0.00 0.00 3.57
173 174 1.133915 AGCTCTCCTCTTCCCTCTACG 60.134 57.143 0.00 0.00 0.00 3.51
174 175 2.748209 AGCTCTCCTCTTCCCTCTAC 57.252 55.000 0.00 0.00 0.00 2.59
176 177 1.133482 GCTAGCTCTCCTCTTCCCTCT 60.133 57.143 7.70 0.00 0.00 3.69
179 180 0.105709 AGGCTAGCTCTCCTCTTCCC 60.106 60.000 15.72 0.00 0.00 3.97
180 181 1.412343 CAAGGCTAGCTCTCCTCTTCC 59.588 57.143 15.72 0.00 0.00 3.46
181 182 1.202521 GCAAGGCTAGCTCTCCTCTTC 60.203 57.143 15.72 0.00 0.00 2.87
182 183 0.829990 GCAAGGCTAGCTCTCCTCTT 59.170 55.000 15.72 5.24 0.00 2.85
185 186 2.069430 GGGCAAGGCTAGCTCTCCT 61.069 63.158 15.72 0.00 0.00 3.69
186 187 1.631071 AAGGGCAAGGCTAGCTCTCC 61.631 60.000 15.72 10.54 43.32 3.71
188 189 0.620121 AGAAGGGCAAGGCTAGCTCT 60.620 55.000 15.72 7.30 46.87 4.09
189 190 0.254462 AAGAAGGGCAAGGCTAGCTC 59.746 55.000 15.72 4.82 0.00 4.09
191 192 0.254462 AGAAGAAGGGCAAGGCTAGC 59.746 55.000 6.04 6.04 0.00 3.42
192 193 2.637947 GAAGAAGAAGGGCAAGGCTAG 58.362 52.381 0.00 0.00 0.00 3.42
194 195 0.038890 GGAAGAAGAAGGGCAAGGCT 59.961 55.000 0.00 0.00 0.00 4.58
195 196 0.038890 AGGAAGAAGAAGGGCAAGGC 59.961 55.000 0.00 0.00 0.00 4.35
196 197 1.632920 AGAGGAAGAAGAAGGGCAAGG 59.367 52.381 0.00 0.00 0.00 3.61
197 198 3.681313 GCTAGAGGAAGAAGAAGGGCAAG 60.681 52.174 0.00 0.00 0.00 4.01
198 199 2.237392 GCTAGAGGAAGAAGAAGGGCAA 59.763 50.000 0.00 0.00 0.00 4.52
200 201 1.140052 GGCTAGAGGAAGAAGAAGGGC 59.860 57.143 0.00 0.00 0.00 5.19
202 203 4.257731 GTTTGGCTAGAGGAAGAAGAAGG 58.742 47.826 0.00 0.00 0.00 3.46
203 204 4.899502 TGTTTGGCTAGAGGAAGAAGAAG 58.100 43.478 0.00 0.00 0.00 2.85
204 205 4.804261 GCTGTTTGGCTAGAGGAAGAAGAA 60.804 45.833 0.00 0.00 0.00 2.52
205 206 3.307059 GCTGTTTGGCTAGAGGAAGAAGA 60.307 47.826 0.00 0.00 0.00 2.87
206 207 3.006247 GCTGTTTGGCTAGAGGAAGAAG 58.994 50.000 0.00 0.00 0.00 2.85
209 210 2.027745 TGAGCTGTTTGGCTAGAGGAAG 60.028 50.000 0.00 0.00 43.20 3.46
210 211 1.977854 TGAGCTGTTTGGCTAGAGGAA 59.022 47.619 0.00 0.00 43.20 3.36
211 212 1.644509 TGAGCTGTTTGGCTAGAGGA 58.355 50.000 0.00 0.00 43.20 3.71
212 213 2.354259 CTTGAGCTGTTTGGCTAGAGG 58.646 52.381 0.00 0.00 43.20 3.69
213 214 2.027745 TCCTTGAGCTGTTTGGCTAGAG 60.028 50.000 0.00 0.00 43.20 2.43
214 215 1.977854 TCCTTGAGCTGTTTGGCTAGA 59.022 47.619 0.00 0.00 43.20 2.43
215 216 2.354259 CTCCTTGAGCTGTTTGGCTAG 58.646 52.381 0.00 0.00 43.20 3.42
217 218 3.336122 CTCCTTGAGCTGTTTGGCT 57.664 52.632 0.00 0.00 46.11 4.75
227 228 1.830477 AGCTACAAGAGGCTCCTTGAG 59.170 52.381 24.04 18.57 44.66 3.02
230 231 3.108847 AGTAGCTACAAGAGGCTCCTT 57.891 47.619 25.28 2.04 39.65 3.36
231 232 2.763448 CAAGTAGCTACAAGAGGCTCCT 59.237 50.000 25.28 2.25 39.65 3.69
232 233 2.498078 ACAAGTAGCTACAAGAGGCTCC 59.502 50.000 25.28 0.00 39.65 4.70
233 234 3.056465 ACACAAGTAGCTACAAGAGGCTC 60.056 47.826 25.28 6.34 39.65 4.70
234 235 2.900546 ACACAAGTAGCTACAAGAGGCT 59.099 45.455 25.28 0.00 41.92 4.58
236 237 4.883083 TCAACACAAGTAGCTACAAGAGG 58.117 43.478 25.28 15.38 0.00 3.69
237 238 6.393990 AGATCAACACAAGTAGCTACAAGAG 58.606 40.000 25.28 16.67 0.00 2.85
238 239 6.346477 AGATCAACACAAGTAGCTACAAGA 57.654 37.500 25.28 11.76 0.00 3.02
239 240 7.274468 CACTAGATCAACACAAGTAGCTACAAG 59.726 40.741 25.28 18.29 0.00 3.16
240 241 7.039993 TCACTAGATCAACACAAGTAGCTACAA 60.040 37.037 25.28 1.39 0.00 2.41
241 242 6.433093 TCACTAGATCAACACAAGTAGCTACA 59.567 38.462 25.28 2.66 0.00 2.74
242 243 6.853720 TCACTAGATCAACACAAGTAGCTAC 58.146 40.000 16.43 16.43 0.00 3.58
243 244 7.646548 ATCACTAGATCAACACAAGTAGCTA 57.353 36.000 0.00 0.00 0.00 3.32
258 259 2.560542 GGTCTCCGCATGATCACTAGAT 59.439 50.000 0.00 0.00 37.13 1.98
259 260 1.957177 GGTCTCCGCATGATCACTAGA 59.043 52.381 0.00 0.00 0.00 2.43
260 261 1.000283 GGGTCTCCGCATGATCACTAG 60.000 57.143 0.00 0.00 0.00 2.57
261 262 1.040646 GGGTCTCCGCATGATCACTA 58.959 55.000 0.00 0.00 0.00 2.74
263 264 1.227674 GGGGTCTCCGCATGATCAC 60.228 63.158 0.00 0.00 36.42 3.06
273 274 4.154347 CTGCTCTGCGGGGTCTCC 62.154 72.222 0.00 0.00 0.00 3.71
282 283 1.687493 ACCCCTAGTCCTGCTCTGC 60.687 63.158 0.00 0.00 0.00 4.26
283 284 0.616111 ACACCCCTAGTCCTGCTCTG 60.616 60.000 0.00 0.00 0.00 3.35
284 285 0.117340 AACACCCCTAGTCCTGCTCT 59.883 55.000 0.00 0.00 0.00 4.09
285 286 1.861982 TAACACCCCTAGTCCTGCTC 58.138 55.000 0.00 0.00 0.00 4.26
286 287 2.022918 AGATAACACCCCTAGTCCTGCT 60.023 50.000 0.00 0.00 0.00 4.24
287 288 2.365941 GAGATAACACCCCTAGTCCTGC 59.634 54.545 0.00 0.00 0.00 4.85
289 290 2.590611 TGGAGATAACACCCCTAGTCCT 59.409 50.000 0.00 0.00 0.00 3.85
291 292 2.361438 CGTGGAGATAACACCCCTAGTC 59.639 54.545 0.00 0.00 35.46 2.59
292 293 2.385803 CGTGGAGATAACACCCCTAGT 58.614 52.381 0.00 0.00 35.46 2.57
293 294 1.687123 CCGTGGAGATAACACCCCTAG 59.313 57.143 0.00 0.00 35.46 3.02
294 295 1.288633 TCCGTGGAGATAACACCCCTA 59.711 52.381 0.00 0.00 35.46 3.53
295 296 0.042131 TCCGTGGAGATAACACCCCT 59.958 55.000 0.00 0.00 35.46 4.79
296 297 0.464452 CTCCGTGGAGATAACACCCC 59.536 60.000 10.50 0.00 44.53 4.95
297 298 1.481871 TCTCCGTGGAGATAACACCC 58.518 55.000 14.57 0.00 45.26 4.61
312 313 3.787001 CCAGGTTCGGGGCTCTCC 61.787 72.222 0.00 0.00 0.00 3.71
321 322 0.458025 GCGAGTCTTACCCAGGTTCG 60.458 60.000 0.00 0.00 34.06 3.95
322 323 0.108281 GGCGAGTCTTACCCAGGTTC 60.108 60.000 0.00 0.00 0.00 3.62
323 324 1.885163 CGGCGAGTCTTACCCAGGTT 61.885 60.000 0.00 0.00 0.00 3.50
325 326 2.494918 CGGCGAGTCTTACCCAGG 59.505 66.667 0.00 0.00 0.00 4.45
326 327 2.494918 CCGGCGAGTCTTACCCAG 59.505 66.667 9.30 0.00 0.00 4.45
327 328 3.766691 GCCGGCGAGTCTTACCCA 61.767 66.667 12.58 0.00 0.00 4.51
328 329 4.867599 CGCCGGCGAGTCTTACCC 62.868 72.222 44.86 0.00 42.83 3.69
339 340 4.166011 GAAGACATGCACGCCGGC 62.166 66.667 19.07 19.07 0.00 6.13
340 341 3.853330 CGAAGACATGCACGCCGG 61.853 66.667 0.00 0.00 0.00 6.13
341 342 4.505217 GCGAAGACATGCACGCCG 62.505 66.667 5.89 8.38 44.27 6.46
344 345 1.258982 GATAAGGCGAAGACATGCACG 59.741 52.381 0.00 0.00 39.87 5.34
346 347 1.475034 GGGATAAGGCGAAGACATGCA 60.475 52.381 0.00 0.00 39.87 3.96
347 348 1.230324 GGGATAAGGCGAAGACATGC 58.770 55.000 0.00 0.00 39.87 4.06
348 349 1.202533 ACGGGATAAGGCGAAGACATG 60.203 52.381 0.00 0.00 39.87 3.21
349 350 1.120530 ACGGGATAAGGCGAAGACAT 58.879 50.000 0.00 0.00 39.87 3.06
351 352 1.931841 GAAACGGGATAAGGCGAAGAC 59.068 52.381 0.00 0.00 0.00 3.01
352 353 1.134610 GGAAACGGGATAAGGCGAAGA 60.135 52.381 0.00 0.00 0.00 2.87
353 354 1.296727 GGAAACGGGATAAGGCGAAG 58.703 55.000 0.00 0.00 0.00 3.79
356 357 0.177141 TCTGGAAACGGGATAAGGCG 59.823 55.000 0.00 0.00 37.31 5.52
357 358 1.065709 TGTCTGGAAACGGGATAAGGC 60.066 52.381 0.00 0.00 37.31 4.35
358 359 2.629051 GTGTCTGGAAACGGGATAAGG 58.371 52.381 0.00 0.00 37.31 2.69
359 360 2.629051 GGTGTCTGGAAACGGGATAAG 58.371 52.381 0.00 0.00 37.31 1.73
361 362 0.533491 CGGTGTCTGGAAACGGGATA 59.467 55.000 0.00 0.00 37.31 2.59
363 364 2.738480 CGGTGTCTGGAAACGGGA 59.262 61.111 0.00 0.00 37.31 5.14
364 365 2.358247 CCGGTGTCTGGAAACGGG 60.358 66.667 0.00 3.64 40.79 5.28
365 366 3.047877 GCCGGTGTCTGGAAACGG 61.048 66.667 1.90 0.00 46.78 4.44
366 367 3.411351 CGCCGGTGTCTGGAAACG 61.411 66.667 6.91 0.00 0.00 3.60
367 368 1.375523 ATCGCCGGTGTCTGGAAAC 60.376 57.895 16.01 0.00 0.00 2.78
368 369 1.375396 CATCGCCGGTGTCTGGAAA 60.375 57.895 16.01 0.00 0.00 3.13
370 371 4.451150 GCATCGCCGGTGTCTGGA 62.451 66.667 16.01 0.00 0.00 3.86
387 388 1.281867 TCATTGTGGGAGCCAGTAAGG 59.718 52.381 0.00 0.00 41.84 2.69
388 389 2.787473 TCATTGTGGGAGCCAGTAAG 57.213 50.000 0.00 0.00 32.34 2.34
389 390 4.780815 CTTATCATTGTGGGAGCCAGTAA 58.219 43.478 0.00 0.00 32.34 2.24
390 391 3.433598 GCTTATCATTGTGGGAGCCAGTA 60.434 47.826 0.00 0.00 32.34 2.74
391 392 2.684927 GCTTATCATTGTGGGAGCCAGT 60.685 50.000 0.00 0.00 32.34 4.00
392 393 1.952296 GCTTATCATTGTGGGAGCCAG 59.048 52.381 0.00 0.00 32.34 4.85
394 395 1.322442 GGCTTATCATTGTGGGAGCC 58.678 55.000 0.00 0.00 42.35 4.70
395 396 2.057137 TGGCTTATCATTGTGGGAGC 57.943 50.000 0.00 0.00 0.00 4.70
397 398 2.487086 CGGATGGCTTATCATTGTGGGA 60.487 50.000 4.36 0.00 37.54 4.37
399 400 2.575532 ACGGATGGCTTATCATTGTGG 58.424 47.619 4.36 0.00 37.54 4.17
400 401 3.243168 CCAACGGATGGCTTATCATTGTG 60.243 47.826 0.00 0.00 43.80 3.33
401 402 2.951642 CCAACGGATGGCTTATCATTGT 59.048 45.455 0.00 3.91 43.80 2.71
402 403 3.631145 CCAACGGATGGCTTATCATTG 57.369 47.619 0.00 7.07 43.80 2.82
413 414 0.235665 GCGACATATGCCAACGGATG 59.764 55.000 1.58 0.00 0.00 3.51
415 416 1.087202 GTGCGACATATGCCAACGGA 61.087 55.000 1.58 2.69 0.00 4.69
416 417 1.351707 GTGCGACATATGCCAACGG 59.648 57.895 1.58 0.00 0.00 4.44
417 418 1.089481 AGGTGCGACATATGCCAACG 61.089 55.000 1.58 5.35 0.00 4.10
420 421 0.105964 GGTAGGTGCGACATATGCCA 59.894 55.000 1.58 0.00 0.00 4.92
421 422 0.105964 TGGTAGGTGCGACATATGCC 59.894 55.000 1.58 0.00 0.00 4.40
422 423 1.217882 GTGGTAGGTGCGACATATGC 58.782 55.000 1.58 0.00 0.00 3.14
423 424 1.540363 GGGTGGTAGGTGCGACATATG 60.540 57.143 0.00 0.00 0.00 1.78
424 425 0.756903 GGGTGGTAGGTGCGACATAT 59.243 55.000 0.00 0.00 0.00 1.78
426 427 2.987125 GGGTGGTAGGTGCGACAT 59.013 61.111 0.00 0.00 0.00 3.06
427 428 3.687102 CGGGTGGTAGGTGCGACA 61.687 66.667 0.00 0.00 0.00 4.35
428 429 3.376078 TCGGGTGGTAGGTGCGAC 61.376 66.667 0.00 0.00 0.00 5.19
429 430 3.376078 GTCGGGTGGTAGGTGCGA 61.376 66.667 0.00 0.00 0.00 5.10
430 431 3.687102 TGTCGGGTGGTAGGTGCG 61.687 66.667 0.00 0.00 0.00 5.34
432 433 1.292223 CAGTGTCGGGTGGTAGGTG 59.708 63.158 0.00 0.00 0.00 4.00
434 435 2.107041 TTGCAGTGTCGGGTGGTAGG 62.107 60.000 0.00 0.00 0.00 3.18
435 436 0.670546 CTTGCAGTGTCGGGTGGTAG 60.671 60.000 0.00 0.00 0.00 3.18
436 437 1.369692 CTTGCAGTGTCGGGTGGTA 59.630 57.895 0.00 0.00 0.00 3.25
437 438 2.111043 CTTGCAGTGTCGGGTGGT 59.889 61.111 0.00 0.00 0.00 4.16
438 439 2.669569 CCTTGCAGTGTCGGGTGG 60.670 66.667 0.00 0.00 0.00 4.61
439 440 3.357079 GCCTTGCAGTGTCGGGTG 61.357 66.667 0.00 0.00 0.00 4.61
440 441 3.560251 AGCCTTGCAGTGTCGGGT 61.560 61.111 0.00 0.00 0.00 5.28
441 442 3.052082 CAGCCTTGCAGTGTCGGG 61.052 66.667 0.00 0.00 0.00 5.14
442 443 3.052082 CCAGCCTTGCAGTGTCGG 61.052 66.667 0.00 0.00 0.00 4.79
443 444 3.052082 CCCAGCCTTGCAGTGTCG 61.052 66.667 0.00 0.00 0.00 4.35
444 445 3.368571 GCCCAGCCTTGCAGTGTC 61.369 66.667 0.00 0.00 0.00 3.67
445 446 4.982701 GGCCCAGCCTTGCAGTGT 62.983 66.667 0.00 0.00 46.69 3.55
455 456 4.733542 TTTACCGCCTGGCCCAGC 62.734 66.667 14.12 1.15 39.70 4.85
456 457 2.438434 CTTTACCGCCTGGCCCAG 60.438 66.667 14.12 2.91 39.70 4.45
458 459 3.699134 CTCCTTTACCGCCTGGCCC 62.699 68.421 14.12 0.00 39.70 5.80
459 460 2.124695 CTCCTTTACCGCCTGGCC 60.125 66.667 14.12 0.00 39.70 5.36
460 461 2.124695 CCTCCTTTACCGCCTGGC 60.125 66.667 9.11 9.11 39.70 4.85
461 462 2.124695 GCCTCCTTTACCGCCTGG 60.125 66.667 0.00 0.00 42.84 4.45
462 463 2.124695 GGCCTCCTTTACCGCCTG 60.125 66.667 0.00 0.00 38.41 4.85
463 464 3.408853 GGGCCTCCTTTACCGCCT 61.409 66.667 0.84 0.00 41.35 5.52
464 465 4.851179 CGGGCCTCCTTTACCGCC 62.851 72.222 0.84 0.00 39.85 6.13
467 468 2.437895 GTGCGGGCCTCCTTTACC 60.438 66.667 0.84 0.00 0.00 2.85
468 469 1.077716 ATGTGCGGGCCTCCTTTAC 60.078 57.895 0.84 0.00 0.00 2.01
469 470 1.223487 GATGTGCGGGCCTCCTTTA 59.777 57.895 0.84 0.00 0.00 1.85
470 471 2.044946 GATGTGCGGGCCTCCTTT 60.045 61.111 0.84 0.00 0.00 3.11
471 472 2.615227 GATGATGTGCGGGCCTCCTT 62.615 60.000 0.84 0.00 0.00 3.36
473 474 2.592861 GATGATGTGCGGGCCTCC 60.593 66.667 0.84 0.00 0.00 4.30
474 475 2.592861 GGATGATGTGCGGGCCTC 60.593 66.667 0.84 0.00 0.00 4.70
475 476 3.410628 TGGATGATGTGCGGGCCT 61.411 61.111 0.84 0.00 0.00 5.19
476 477 3.211963 GTGGATGATGTGCGGGCC 61.212 66.667 0.00 0.00 0.00 5.80
477 478 2.124570 AGTGGATGATGTGCGGGC 60.125 61.111 0.00 0.00 0.00 6.13
478 479 0.392863 TTCAGTGGATGATGTGCGGG 60.393 55.000 0.00 0.00 37.89 6.13
479 480 1.012086 CTTCAGTGGATGATGTGCGG 58.988 55.000 0.00 0.00 37.89 5.69
480 481 0.376152 GCTTCAGTGGATGATGTGCG 59.624 55.000 0.00 0.00 37.89 5.34
481 482 1.131883 GTGCTTCAGTGGATGATGTGC 59.868 52.381 0.00 0.00 37.89 4.57
482 483 2.161012 GTGTGCTTCAGTGGATGATGTG 59.839 50.000 0.00 0.00 37.89 3.21
483 484 2.224597 TGTGTGCTTCAGTGGATGATGT 60.225 45.455 0.00 0.00 37.89 3.06
484 485 2.429478 TGTGTGCTTCAGTGGATGATG 58.571 47.619 0.00 0.00 37.89 3.07
485 486 2.865119 TGTGTGCTTCAGTGGATGAT 57.135 45.000 0.00 0.00 37.89 2.45
486 487 2.497138 CTTGTGTGCTTCAGTGGATGA 58.503 47.619 0.00 0.00 35.62 2.92
487 488 1.068748 GCTTGTGTGCTTCAGTGGATG 60.069 52.381 0.00 0.00 0.00 3.51
489 490 0.107263 TGCTTGTGTGCTTCAGTGGA 60.107 50.000 0.00 0.00 0.00 4.02
490 491 0.956633 ATGCTTGTGTGCTTCAGTGG 59.043 50.000 0.00 0.00 0.00 4.00
491 492 3.558505 GTTATGCTTGTGTGCTTCAGTG 58.441 45.455 0.00 0.00 0.00 3.66
495 496 2.032030 ACACGTTATGCTTGTGTGCTTC 60.032 45.455 0.00 0.00 44.59 3.86
496 497 1.946768 ACACGTTATGCTTGTGTGCTT 59.053 42.857 0.00 0.00 44.59 3.91
497 498 1.593196 ACACGTTATGCTTGTGTGCT 58.407 45.000 0.00 0.00 44.59 4.40
498 499 2.734606 TCTACACGTTATGCTTGTGTGC 59.265 45.455 7.43 0.00 45.70 4.57
499 500 3.987868 ACTCTACACGTTATGCTTGTGTG 59.012 43.478 7.43 0.00 45.70 3.82
502 503 5.166398 GGTTACTCTACACGTTATGCTTGT 58.834 41.667 0.00 0.00 33.89 3.16
503 504 4.264614 CGGTTACTCTACACGTTATGCTTG 59.735 45.833 0.00 0.00 0.00 4.01
504 505 4.156556 TCGGTTACTCTACACGTTATGCTT 59.843 41.667 0.00 0.00 0.00 3.91
505 506 3.691118 TCGGTTACTCTACACGTTATGCT 59.309 43.478 0.00 0.00 0.00 3.79
506 507 3.788163 GTCGGTTACTCTACACGTTATGC 59.212 47.826 0.00 0.00 0.00 3.14
507 508 4.346129 GGTCGGTTACTCTACACGTTATG 58.654 47.826 0.00 0.00 0.00 1.90
508 509 3.063997 CGGTCGGTTACTCTACACGTTAT 59.936 47.826 0.00 0.00 0.00 1.89
510 511 1.197721 CGGTCGGTTACTCTACACGTT 59.802 52.381 0.00 0.00 0.00 3.99
511 512 0.798776 CGGTCGGTTACTCTACACGT 59.201 55.000 0.00 0.00 0.00 4.49
512 513 0.097674 CCGGTCGGTTACTCTACACG 59.902 60.000 0.55 0.00 0.00 4.49
524 525 2.849880 TCTCGTATAAAACCGGTCGG 57.150 50.000 8.04 7.97 42.03 4.79
527 528 8.721019 TTATTCATTTCTCGTATAAAACCGGT 57.279 30.769 0.00 0.00 0.00 5.28
579 580 1.034356 GGCGGTACCCAAACACTTTT 58.966 50.000 6.25 0.00 0.00 2.27
580 581 0.184211 AGGCGGTACCCAAACACTTT 59.816 50.000 6.25 0.00 40.58 2.66
582 583 0.322648 GTAGGCGGTACCCAAACACT 59.677 55.000 6.25 0.00 40.58 3.55
583 584 1.015607 CGTAGGCGGTACCCAAACAC 61.016 60.000 6.25 0.00 40.58 3.32
585 586 0.176449 ATCGTAGGCGGTACCCAAAC 59.824 55.000 6.25 0.00 40.58 2.93
587 588 0.176219 CAATCGTAGGCGGTACCCAA 59.824 55.000 6.25 0.00 40.58 4.12
588 589 1.678598 CCAATCGTAGGCGGTACCCA 61.679 60.000 6.25 0.00 40.58 4.51
589 590 1.068585 CCAATCGTAGGCGGTACCC 59.931 63.158 6.25 0.00 40.58 3.69
590 591 0.677842 ATCCAATCGTAGGCGGTACC 59.322 55.000 0.16 0.16 38.89 3.34
591 592 2.132762 CAATCCAATCGTAGGCGGTAC 58.867 52.381 0.00 0.00 38.89 3.34
592 593 1.069513 CCAATCCAATCGTAGGCGGTA 59.930 52.381 0.00 0.00 38.89 4.02
593 594 0.179056 CCAATCCAATCGTAGGCGGT 60.179 55.000 0.00 0.00 38.89 5.68
594 595 0.105964 TCCAATCCAATCGTAGGCGG 59.894 55.000 0.00 0.00 38.89 6.13
596 597 1.134220 TGGTCCAATCCAATCGTAGGC 60.134 52.381 0.00 0.00 34.24 3.93
597 598 3.206150 CTTGGTCCAATCCAATCGTAGG 58.794 50.000 4.34 0.00 44.94 3.18
598 599 3.118408 TCCTTGGTCCAATCCAATCGTAG 60.118 47.826 4.34 0.00 44.94 3.51
600 601 1.633432 TCCTTGGTCCAATCCAATCGT 59.367 47.619 4.34 0.00 44.94 3.73
615 616 4.097741 TGGATTTATGCCGTTGAATCCTTG 59.902 41.667 13.32 0.00 44.94 3.61
1229 4001 1.061812 AGGTAGATGAGGGTGGAGCAT 60.062 52.381 0.00 0.00 0.00 3.79
1587 4359 1.136690 TGCACGCTTTGTCTACTTCG 58.863 50.000 0.00 0.00 0.00 3.79
1618 4390 3.054875 TGAACTCCCAGTTGGATCATCTG 60.055 47.826 0.00 0.00 44.07 2.90
1648 4420 7.491372 GTCGATAATTGAGTTGTAGATCACCAA 59.509 37.037 0.00 0.00 0.00 3.67
1864 4636 4.335315 TGAATCCATAAATGAGTTCCACGC 59.665 41.667 0.00 0.00 0.00 5.34
2221 4993 0.321919 TTGTCCAGAGCAGCATCCAC 60.322 55.000 0.00 0.00 0.00 4.02
2274 5046 3.494251 GGCATTGGTAAACAGCTTTGTTG 59.506 43.478 0.00 0.00 31.64 3.33
2317 5089 4.686191 TGGCTTTCACAAAATCACCATT 57.314 36.364 0.00 0.00 0.00 3.16
2410 5182 3.225940 CCTTTCCTTCTTTGCTCAGGTT 58.774 45.455 0.00 0.00 0.00 3.50
2416 5188 3.117512 TCCTTCACCTTTCCTTCTTTGCT 60.118 43.478 0.00 0.00 0.00 3.91
2439 5211 4.650734 TGAAGTCAAACATATCCTGTGCA 58.349 39.130 0.00 0.00 38.39 4.57
2466 5238 2.202974 GGCGGACGACCAATACCC 60.203 66.667 4.48 0.00 35.59 3.69
2478 5250 5.538849 TGTACATAATAACATCAGGCGGA 57.461 39.130 0.00 0.00 0.00 5.54
2480 5252 7.798516 GTGAATTGTACATAATAACATCAGGCG 59.201 37.037 0.00 0.00 0.00 5.52
2490 5262 9.506018 CCATCCATCAGTGAATTGTACATAATA 57.494 33.333 0.00 0.00 0.00 0.98
2770 5543 1.990799 CCACTTTCGCTCATCGTACA 58.009 50.000 0.00 0.00 39.67 2.90
2862 5635 6.955963 CACGTAATTTGTTGAACAGCTCTATC 59.044 38.462 0.00 0.00 0.00 2.08
2917 5690 8.701908 AACATAGCAGAAATCATGGTATTGAT 57.298 30.769 0.00 0.00 38.85 2.57
3207 5980 5.514279 GTTGAAACTTCAAGTGACAGATGG 58.486 41.667 5.13 0.00 46.80 3.51
3237 6010 8.683445 TCCCCTGAGAAGAGAGATACTATTAAT 58.317 37.037 0.00 0.00 29.65 1.40
3579 6390 2.280797 GCACTCCTTGGTCACGCA 60.281 61.111 0.00 0.00 0.00 5.24
3921 6793 1.961133 ATTTGGGAACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3922 6794 1.961133 TATTTGGGAACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
3923 6795 4.102681 ACTTATATTTGGGAACGGAGGGAG 59.897 45.833 0.00 0.00 0.00 4.30
3924 6796 4.042174 ACTTATATTTGGGAACGGAGGGA 58.958 43.478 0.00 0.00 0.00 4.20
3925 6797 4.102681 AGACTTATATTTGGGAACGGAGGG 59.897 45.833 0.00 0.00 0.00 4.30
3926 6798 5.291905 AGACTTATATTTGGGAACGGAGG 57.708 43.478 0.00 0.00 0.00 4.30
3927 6799 7.048512 AGAAAGACTTATATTTGGGAACGGAG 58.951 38.462 0.00 0.00 0.00 4.63
3928 6800 6.954232 AGAAAGACTTATATTTGGGAACGGA 58.046 36.000 0.00 0.00 0.00 4.69
3929 6801 8.202137 TCTAGAAAGACTTATATTTGGGAACGG 58.798 37.037 0.00 0.00 0.00 4.44
3930 6802 9.250624 CTCTAGAAAGACTTATATTTGGGAACG 57.749 37.037 0.00 0.00 0.00 3.95
3943 6815 9.050601 CACTTGTTGAAATCTCTAGAAAGACTT 57.949 33.333 0.00 0.00 0.00 3.01
3944 6816 8.424918 TCACTTGTTGAAATCTCTAGAAAGACT 58.575 33.333 0.00 0.00 0.00 3.24
3945 6817 8.594881 TCACTTGTTGAAATCTCTAGAAAGAC 57.405 34.615 0.00 0.00 0.00 3.01
3946 6818 9.784531 AATCACTTGTTGAAATCTCTAGAAAGA 57.215 29.630 0.00 0.00 37.92 2.52
3953 6825 8.554528 CGCATATAATCACTTGTTGAAATCTCT 58.445 33.333 0.00 0.00 37.92 3.10
3954 6826 7.800380 CCGCATATAATCACTTGTTGAAATCTC 59.200 37.037 0.00 0.00 37.92 2.75
3955 6827 7.498900 TCCGCATATAATCACTTGTTGAAATCT 59.501 33.333 0.00 0.00 37.92 2.40
3956 6828 7.639039 TCCGCATATAATCACTTGTTGAAATC 58.361 34.615 0.00 0.00 37.92 2.17
3957 6829 7.566760 TCCGCATATAATCACTTGTTGAAAT 57.433 32.000 0.00 0.00 37.92 2.17
3958 6830 6.993786 TCCGCATATAATCACTTGTTGAAA 57.006 33.333 0.00 0.00 37.92 2.69
3959 6831 6.372937 TGTTCCGCATATAATCACTTGTTGAA 59.627 34.615 0.00 0.00 37.92 2.69
3960 6832 5.877564 TGTTCCGCATATAATCACTTGTTGA 59.122 36.000 0.00 0.00 39.11 3.18
3961 6833 6.117911 TGTTCCGCATATAATCACTTGTTG 57.882 37.500 0.00 0.00 0.00 3.33
3962 6834 6.751514 TTGTTCCGCATATAATCACTTGTT 57.248 33.333 0.00 0.00 0.00 2.83
3963 6835 6.751514 TTTGTTCCGCATATAATCACTTGT 57.248 33.333 0.00 0.00 0.00 3.16
3964 6836 7.914871 TCATTTTGTTCCGCATATAATCACTTG 59.085 33.333 0.00 0.00 0.00 3.16
3965 6837 7.995289 TCATTTTGTTCCGCATATAATCACTT 58.005 30.769 0.00 0.00 0.00 3.16
3966 6838 7.283127 ACTCATTTTGTTCCGCATATAATCACT 59.717 33.333 0.00 0.00 0.00 3.41
3967 6839 7.376866 CACTCATTTTGTTCCGCATATAATCAC 59.623 37.037 0.00 0.00 0.00 3.06
3968 6840 7.281999 TCACTCATTTTGTTCCGCATATAATCA 59.718 33.333 0.00 0.00 0.00 2.57
3969 6841 7.639039 TCACTCATTTTGTTCCGCATATAATC 58.361 34.615 0.00 0.00 0.00 1.75
3970 6842 7.566760 TCACTCATTTTGTTCCGCATATAAT 57.433 32.000 0.00 0.00 0.00 1.28
3971 6843 6.993786 TCACTCATTTTGTTCCGCATATAA 57.006 33.333 0.00 0.00 0.00 0.98
3972 6844 6.993786 TTCACTCATTTTGTTCCGCATATA 57.006 33.333 0.00 0.00 0.00 0.86
3973 6845 5.895636 TTCACTCATTTTGTTCCGCATAT 57.104 34.783 0.00 0.00 0.00 1.78
3974 6846 5.647658 AGATTCACTCATTTTGTTCCGCATA 59.352 36.000 0.00 0.00 0.00 3.14
3975 6847 4.460382 AGATTCACTCATTTTGTTCCGCAT 59.540 37.500 0.00 0.00 0.00 4.73
3976 6848 3.820467 AGATTCACTCATTTTGTTCCGCA 59.180 39.130 0.00 0.00 0.00 5.69
3977 6849 4.425577 AGATTCACTCATTTTGTTCCGC 57.574 40.909 0.00 0.00 0.00 5.54
3978 6850 6.480524 TGTAGATTCACTCATTTTGTTCCG 57.519 37.500 0.00 0.00 0.00 4.30
3979 6851 8.734386 AGAATGTAGATTCACTCATTTTGTTCC 58.266 33.333 14.46 0.00 40.59 3.62
4019 6891 6.665992 ATGGACTACAACATACGGATGTAT 57.334 37.500 15.10 8.21 45.93 2.29
4020 6892 6.474140 AATGGACTACAACATACGGATGTA 57.526 37.500 15.10 0.00 45.93 2.29
4022 6894 7.780008 TTAAATGGACTACAACATACGGATG 57.220 36.000 5.94 5.94 39.16 3.51
4023 6895 8.795842 TTTTAAATGGACTACAACATACGGAT 57.204 30.769 0.00 0.00 0.00 4.18
4024 6896 8.670135 CATTTTAAATGGACTACAACATACGGA 58.330 33.333 9.63 0.00 0.00 4.69
4025 6897 8.455682 ACATTTTAAATGGACTACAACATACGG 58.544 33.333 20.00 0.00 0.00 4.02
4026 6898 9.485591 GACATTTTAAATGGACTACAACATACG 57.514 33.333 20.00 0.00 0.00 3.06
4036 6908 8.870116 AGCCTTTTTAGACATTTTAAATGGACT 58.130 29.630 20.00 18.70 0.00 3.85
4037 6909 9.489084 AAGCCTTTTTAGACATTTTAAATGGAC 57.511 29.630 20.00 13.63 0.00 4.02
4054 6926 9.147732 CCTCCATTCCTAAATATAAGCCTTTTT 57.852 33.333 0.00 0.00 0.00 1.94
4055 6927 7.730332 CCCTCCATTCCTAAATATAAGCCTTTT 59.270 37.037 0.00 0.00 0.00 2.27
4056 6928 7.075009 TCCCTCCATTCCTAAATATAAGCCTTT 59.925 37.037 0.00 0.00 0.00 3.11
4057 6929 6.566480 TCCCTCCATTCCTAAATATAAGCCTT 59.434 38.462 0.00 0.00 0.00 4.35
4058 6930 6.098446 TCCCTCCATTCCTAAATATAAGCCT 58.902 40.000 0.00 0.00 0.00 4.58
4059 6931 6.012421 ACTCCCTCCATTCCTAAATATAAGCC 60.012 42.308 0.00 0.00 0.00 4.35
4060 6932 7.021998 ACTCCCTCCATTCCTAAATATAAGC 57.978 40.000 0.00 0.00 0.00 3.09
4061 6933 9.327731 ACTACTCCCTCCATTCCTAAATATAAG 57.672 37.037 0.00 0.00 0.00 1.73
4062 6934 9.684702 AACTACTCCCTCCATTCCTAAATATAA 57.315 33.333 0.00 0.00 0.00 0.98
4063 6935 9.101325 CAACTACTCCCTCCATTCCTAAATATA 57.899 37.037 0.00 0.00 0.00 0.86
4064 6936 7.474936 GCAACTACTCCCTCCATTCCTAAATAT 60.475 40.741 0.00 0.00 0.00 1.28
4065 6937 6.183361 GCAACTACTCCCTCCATTCCTAAATA 60.183 42.308 0.00 0.00 0.00 1.40
4066 6938 5.398012 GCAACTACTCCCTCCATTCCTAAAT 60.398 44.000 0.00 0.00 0.00 1.40
4067 6939 4.080526 GCAACTACTCCCTCCATTCCTAAA 60.081 45.833 0.00 0.00 0.00 1.85
4068 6940 3.454812 GCAACTACTCCCTCCATTCCTAA 59.545 47.826 0.00 0.00 0.00 2.69
4069 6941 3.039011 GCAACTACTCCCTCCATTCCTA 58.961 50.000 0.00 0.00 0.00 2.94
4070 6942 1.840635 GCAACTACTCCCTCCATTCCT 59.159 52.381 0.00 0.00 0.00 3.36
4071 6943 1.134068 GGCAACTACTCCCTCCATTCC 60.134 57.143 0.00 0.00 0.00 3.01
4072 6944 2.333688 GGCAACTACTCCCTCCATTC 57.666 55.000 0.00 0.00 0.00 2.67
4099 6971 8.709386 ACATCAGATTACTAACTAAAGTGCAG 57.291 34.615 0.00 0.00 0.00 4.41
4133 7007 5.094134 GCTTCTCATCTTCAAAACATGCTC 58.906 41.667 0.00 0.00 0.00 4.26
4276 7152 0.175760 TACAGCGCTGATCCTTCACC 59.824 55.000 42.03 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.