AutoCloner

Multiple sequence alignment - TraesCS2D01G532200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G532200	chr2D	100.000	2882	0	0	1	2882	617546874	617549755	0.000000e+00	5323.0
1	TraesCS2D01G532200	chr2D	90.990	2597	201	14	3	2584	617887729	617890307	0.000000e+00	3469.0
2	TraesCS2D01G532200	chr2D	90.552	2445	185	19	1	2423	617731323	617733743	0.000000e+00	3193.0
3	TraesCS2D01G532200	chr2D	90.531	2334	178	19	1	2296	617909360	617907032	0.000000e+00	3046.0
4	TraesCS2D01G532200	chr2D	92.913	1933	133	3	1	1931	617760529	617762459	0.000000e+00	2808.0
5	TraesCS2D01G532200	chr2D	92.602	1933	141	1	1	1931	617539259	617541191	0.000000e+00	2776.0
6	TraesCS2D01G532200	chr2D	92.543	1931	140	3	3	1931	617634261	617636189	0.000000e+00	2765.0
7	TraesCS2D01G532200	chr2D	90.041	241	18	2	2424	2662	617733820	617734056	1.000000e-79	307.0
8	TraesCS2D01G532200	chr2D	87.162	148	8	5	2730	2870	617890604	617890747	1.070000e-34	158.0
9	TraesCS2D01G532200	chr2A	91.194	2589	199	16	3	2583	748437975	748440542	0.000000e+00	3491.0
10	TraesCS2D01G532200	chr2A	91.674	2306	168	12	370	2659	748400734	748403031	0.000000e+00	3173.0
11	TraesCS2D01G532200	chr2A	93.068	1933	130	3	1	1931	746620811	746622741	0.000000e+00	2824.0
12	TraesCS2D01G532200	chr2A	91.958	2002	156	3	1	2000	748285564	748287562	0.000000e+00	2800.0
13	TraesCS2D01G532200	chr2A	92.328	1147	80	6	999	2142	748220973	748222114	0.000000e+00	1624.0
14	TraesCS2D01G532200	chr2A	95.858	169	6	1	2712	2880	748416332	748416499	3.660000e-69	272.0
15	TraesCS2D01G532200	chr2A	80.952	294	30	15	2301	2585	747677636	747677360	2.910000e-50	209.0
16	TraesCS2D01G532200	chr2A	88.889	63	6	1	2730	2791	748440880	748440942	3.080000e-10	76.8
17	TraesCS2D01G532200	chr2A	93.182	44	3	0	2423	2466	748464188	748464145	6.670000e-07	65.8
18	TraesCS2D01G532200	chr2A	100.000	29	0	0	2437	2465	748210784	748210812	1.000000e-03	54.7
19	TraesCS2D01G532200	chr2B	91.634	2307	182	8	76	2377	753808140	753805840	0.000000e+00	3181.0
20	TraesCS2D01G532200	chr7B	90.506	316	29	1	2108	2423	7811067	7810753	1.600000e-112	416.0
21	TraesCS2D01G532200	chr7B	85.811	148	17	2	2424	2571	7810675	7810532	1.380000e-33	154.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G532200	chr2D	617546874	617549755	2881	False	5323.0	5323	100.0000	1	2882	1	chr2D.!!$F2	2881
1	TraesCS2D01G532200	chr2D	617907032	617909360	2328	True	3046.0	3046	90.5310	1	2296	1	chr2D.!!$R1	2295
2	TraesCS2D01G532200	chr2D	617760529	617762459	1930	False	2808.0	2808	92.9130	1	1931	1	chr2D.!!$F4	1930
3	TraesCS2D01G532200	chr2D	617539259	617541191	1932	False	2776.0	2776	92.6020	1	1931	1	chr2D.!!$F1	1930
4	TraesCS2D01G532200	chr2D	617634261	617636189	1928	False	2765.0	2765	92.5430	3	1931	1	chr2D.!!$F3	1928
5	TraesCS2D01G532200	chr2D	617887729	617890747	3018	False	1813.5	3469	89.0760	3	2870	2	chr2D.!!$F6	2867
6	TraesCS2D01G532200	chr2D	617731323	617734056	2733	False	1750.0	3193	90.2965	1	2662	2	chr2D.!!$F5	2661
7	TraesCS2D01G532200	chr2A	748400734	748403031	2297	False	3173.0	3173	91.6740	370	2659	1	chr2A.!!$F5	2289
8	TraesCS2D01G532200	chr2A	746620811	746622741	1930	False	2824.0	2824	93.0680	1	1931	1	chr2A.!!$F1	1930
9	TraesCS2D01G532200	chr2A	748285564	748287562	1998	False	2800.0	2800	91.9580	1	2000	1	chr2A.!!$F4	1999
10	TraesCS2D01G532200	chr2A	748437975	748440942	2967	False	1783.9	3491	90.0415	3	2791	2	chr2A.!!$F7	2788
11	TraesCS2D01G532200	chr2A	748220973	748222114	1141	False	1624.0	1624	92.3280	999	2142	1	chr2A.!!$F3	1143
12	TraesCS2D01G532200	chr2B	753805840	753808140	2300	True	3181.0	3181	91.6340	76	2377	1	chr2B.!!$R1	2301
13	TraesCS2D01G532200	chr7B	7810532	7811067	535	True	285.0	416	88.1585	2108	2571	2	chr7B.!!$R1	463

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
372	373	0.984995	GTGGAAGGAGGCAGTTAGGT	59.015	55.0	0.0	0.0	0.0	3.08	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2247	2313	1.606668	TCGTGTTTGTCTTGCAATCCC	59.393	47.619	0.0	0.0	36.89	3.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
372	373	0.984995	GTGGAAGGAGGCAGTTAGGT	59.015	55.000	0.00	0.00	0.00	3.08
381	382	4.783227	AGGAGGCAGTTAGGTTATTCAAGA	59.217	41.667	0.00	0.00	0.00	3.02
400	401	4.725790	AGAAAATGATAAGGCTTGGTGC	57.274	40.909	10.69	0.00	41.94	5.01
612	613	7.171508	TCAATTCGATGCTACAGAATGGTATTC	59.828	37.037	0.00	0.00	43.62	1.75
914	917	7.150783	AGGAATTGATTTCTGAAGCAGTTAC	57.849	36.000	0.00	5.32	32.29	2.50
923	926	4.017808	TCTGAAGCAGTTACTAGAGGTCC	58.982	47.826	0.00	0.00	32.61	4.46
1234	1238	3.421919	TCATGGAAATGTCACTCAGCA	57.578	42.857	0.00	0.00	0.00	4.41
1389	1393	7.593825	ACAACATAGTTCTTAATGGACTTTGC	58.406	34.615	0.00	0.00	0.00	3.68
1472	1476	7.849515	CGTGAAGATTGATGTCATAACATTCAG	59.150	37.037	0.00	0.00	46.20	3.02
1886	1891	1.487976	TGAGATGTTGGGCTGAGGATC	59.512	52.381	0.00	0.00	0.00	3.36
2061	2097	6.569179	TTAAAATAACAAGCCTGTGGTCTC	57.431	37.500	0.00	0.00	35.37	3.36
2062	2098	2.789409	ATAACAAGCCTGTGGTCTCC	57.211	50.000	0.00	0.00	35.37	3.71
2078	2114	4.142160	TGGTCTCCGAGTCATATGAGTTTG	60.142	45.833	14.26	9.95	0.00	2.93
2177	2224	7.397192	AGAGTATCCAAATTTGTGGCAAAGTAT	59.603	33.333	16.73	0.00	38.68	2.12
2247	2313	2.686405	TGCAATATGAAGGCTTGAGCAG	59.314	45.455	3.46	0.00	44.36	4.24
2251	2317	0.924823	ATGAAGGCTTGAGCAGGGAT	59.075	50.000	3.46	0.00	44.36	3.85
2311	2378	9.912634	AACAACTGTGATATTTTTGAGTAATGG	57.087	29.630	0.00	0.00	0.00	3.16
2544	2711	8.801299	TGTAAAAATACATTGCAATCTCTCCAA	58.199	29.630	9.53	0.00	0.00	3.53
2585	2883	9.694520	CTTGATTCACTGTCTATGTTATTTTCG	57.305	33.333	0.00	0.00	0.00	3.46
2662	3003	1.439353	ATGGTGCATTCGATGGCGTC	61.439	55.000	0.00	0.00	38.98	5.19
2663	3004	1.815421	GGTGCATTCGATGGCGTCT	60.815	57.895	5.00	0.00	38.98	4.18
2664	3005	1.638467	GTGCATTCGATGGCGTCTC	59.362	57.895	5.00	0.00	38.98	3.36
2665	3006	1.083806	GTGCATTCGATGGCGTCTCA	61.084	55.000	5.00	0.00	38.98	3.27
2666	3007	0.179076	TGCATTCGATGGCGTCTCAT	60.179	50.000	5.00	0.00	38.98	2.90
2667	3008	0.940126	GCATTCGATGGCGTCTCATT	59.060	50.000	5.00	0.00	38.98	2.57
2668	3009	1.333524	GCATTCGATGGCGTCTCATTG	60.334	52.381	5.00	0.08	38.98	2.82
2670	3011	1.640428	TTCGATGGCGTCTCATTGTC	58.360	50.000	5.00	0.00	38.98	3.18
2671	3012	0.530288	TCGATGGCGTCTCATTGTCA	59.470	50.000	5.00	0.00	38.98	3.58
2673	3014	1.009829	GATGGCGTCTCATTGTCACC	58.990	55.000	0.00	0.00	0.00	4.02
2674	3015	0.324614	ATGGCGTCTCATTGTCACCA	59.675	50.000	0.00	0.00	0.00	4.17
2675	3016	0.320683	TGGCGTCTCATTGTCACCAG	60.321	55.000	0.00	0.00	0.00	4.00
2677	3018	1.071605	GCGTCTCATTGTCACCAGTC	58.928	55.000	0.00	0.00	0.00	3.51
2679	3020	2.061773	CGTCTCATTGTCACCAGTCAC	58.938	52.381	0.00	0.00	0.00	3.67
2680	3021	2.417719	GTCTCATTGTCACCAGTCACC	58.582	52.381	0.00	0.00	0.00	4.02
2681	3022	1.000843	TCTCATTGTCACCAGTCACCG	59.999	52.381	0.00	0.00	0.00	4.94
2682	3023	0.034756	TCATTGTCACCAGTCACCGG	59.965	55.000	0.00	0.00	0.00	5.28
2683	3024	0.034756	CATTGTCACCAGTCACCGGA	59.965	55.000	9.46	0.00	0.00	5.14
2684	3025	0.762418	ATTGTCACCAGTCACCGGAA	59.238	50.000	9.46	0.00	0.00	4.30
2685	3026	0.105964	TTGTCACCAGTCACCGGAAG	59.894	55.000	9.46	0.00	0.00	3.46
2686	3027	0.757561	TGTCACCAGTCACCGGAAGA	60.758	55.000	9.46	2.03	0.00	2.87
2687	3028	0.038159	GTCACCAGTCACCGGAAGAG	60.038	60.000	9.46	0.00	0.00	2.85
2688	3029	1.374758	CACCAGTCACCGGAAGAGC	60.375	63.158	9.46	1.03	0.00	4.09
2689	3030	2.125912	CCAGTCACCGGAAGAGCG	60.126	66.667	9.46	0.00	0.00	5.03
2691	3032	1.734477	CAGTCACCGGAAGAGCGTG	60.734	63.158	9.46	0.00	0.00	5.34
2692	3033	1.901948	AGTCACCGGAAGAGCGTGA	60.902	57.895	9.46	0.00	34.23	4.35
2693	3034	1.444553	GTCACCGGAAGAGCGTGAG	60.445	63.158	9.46	0.00	37.21	3.51
2694	3035	1.602605	TCACCGGAAGAGCGTGAGA	60.603	57.895	9.46	0.00	32.85	3.27
2696	3037	0.803768	CACCGGAAGAGCGTGAGATG	60.804	60.000	9.46	0.00	0.00	2.90
2698	3039	1.513158	CGGAAGAGCGTGAGATGGT	59.487	57.895	0.00	0.00	0.00	3.55
2700	3041	1.086634	GGAAGAGCGTGAGATGGTGC	61.087	60.000	0.00	0.00	0.00	5.01
2702	3043	1.135139	GAAGAGCGTGAGATGGTGCTA	59.865	52.381	0.00	0.00	37.91	3.49
2703	3044	1.186200	AGAGCGTGAGATGGTGCTAA	58.814	50.000	0.00	0.00	37.91	3.09
2704	3045	1.550524	AGAGCGTGAGATGGTGCTAAA	59.449	47.619	0.00	0.00	37.91	1.85
2705	3046	2.169352	AGAGCGTGAGATGGTGCTAAAT	59.831	45.455	0.00	0.00	37.91	1.40
2706	3047	2.541762	GAGCGTGAGATGGTGCTAAATC	59.458	50.000	0.00	0.00	37.91	2.17
2707	3048	2.093500	AGCGTGAGATGGTGCTAAATCA	60.093	45.455	0.00	0.00	35.56	2.57
2708	3049	2.677836	GCGTGAGATGGTGCTAAATCAA	59.322	45.455	0.00	0.00	0.00	2.57
2710	3051	4.728882	GCGTGAGATGGTGCTAAATCAAAG	60.729	45.833	0.00	0.00	0.00	2.77
2712	3053	5.122239	CGTGAGATGGTGCTAAATCAAAGAA	59.878	40.000	0.00	0.00	0.00	2.52
2714	3055	7.025963	GTGAGATGGTGCTAAATCAAAGAAAG	58.974	38.462	0.00	0.00	0.00	2.62
2715	3056	6.716628	TGAGATGGTGCTAAATCAAAGAAAGT	59.283	34.615	0.00	0.00	0.00	2.66
2717	3058	6.716628	AGATGGTGCTAAATCAAAGAAAGTCA	59.283	34.615	0.00	0.00	0.00	3.41
2719	3060	6.738114	TGGTGCTAAATCAAAGAAAGTCAAG	58.262	36.000	0.00	0.00	0.00	3.02
2720	3061	5.631096	GGTGCTAAATCAAAGAAAGTCAAGC	59.369	40.000	0.00	0.00	0.00	4.01
2721	3062	5.631096	GTGCTAAATCAAAGAAAGTCAAGCC	59.369	40.000	0.00	0.00	0.00	4.35
2725	3066	3.025322	TCAAAGAAAGTCAAGCCCCAA	57.975	42.857	0.00	0.00	0.00	4.12
2726	3067	2.958355	TCAAAGAAAGTCAAGCCCCAAG	59.042	45.455	0.00	0.00	0.00	3.61
2727	3068	1.332195	AAGAAAGTCAAGCCCCAAGC	58.668	50.000	0.00	0.00	44.25	4.01
2740	3097	2.110967	CCAAGCCTGATGAGTGCGG	61.111	63.158	0.00	0.00	0.00	5.69
2746	3103	1.804372	GCCTGATGAGTGCGGAGTTAG	60.804	57.143	0.00	0.00	0.00	2.34
2752	3109	1.202582	TGAGTGCGGAGTTAGAAGAGC	59.797	52.381	0.00	0.00	0.00	4.09
2809	3173	4.803908	GCGAGCAAGGGAAGGGGG	62.804	72.222	0.00	0.00	0.00	5.40
2827	3191	3.701454	AGGAGCTTCCTCGTCCAC	58.299	61.111	0.00	0.00	45.66	4.02
2855	3219	2.202479	GCCAGCGGCGACATTTTC	60.202	61.111	12.98	0.00	39.62	2.29
2857	3221	1.135315	CCAGCGGCGACATTTTCTG	59.865	57.895	12.98	6.24	0.00	3.02
2870	3234	5.050159	CGACATTTTCTGACATTGACTGACA	60.050	40.000	0.00	0.00	0.00	3.58
2871	3235	6.309712	ACATTTTCTGACATTGACTGACAG	57.690	37.500	0.00	0.00	45.40	3.51
2877	3241	5.739752	CTGACATTGACTGACAGAAACAA	57.260	39.130	10.08	12.18	46.48	2.83
2878	3242	6.122850	CTGACATTGACTGACAGAAACAAA	57.877	37.500	10.08	0.00	46.48	2.83
2879	3243	6.507958	TGACATTGACTGACAGAAACAAAA	57.492	33.333	10.08	0.00	0.00	2.44
2880	3244	6.554419	TGACATTGACTGACAGAAACAAAAG	58.446	36.000	10.08	11.06	0.00	2.27
2881	3245	5.894807	ACATTGACTGACAGAAACAAAAGG	58.105	37.500	10.08	8.84	0.00	3.11

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
372	373	9.034800	ACCAAGCCTTATCATTTTCTTGAATAA	57.965	29.630	0.00	0.00	34.49	1.40
400	401	3.004839	CCACATGACGGTATCTGGTAGAG	59.995	52.174	0.00	0.00	0.00	2.43
612	613	3.659786	TGAAAACACGGTGATCAGGTAG	58.340	45.455	16.29	0.00	0.00	3.18
948	951	3.244284	TGCACAGGTCGTTTATTACAGGT	60.244	43.478	0.00	0.00	0.00	4.00
1389	1393	5.006844	TGCTTCATCAGTGCAATTGTTTTTG	59.993	36.000	7.40	1.64	33.48	2.44
1472	1476	8.755696	TTTAAACATTGCAGAAATCATGGTAC	57.244	30.769	0.00	0.00	0.00	3.34
1515	1520	2.562738	AGTAGCAAACAAATCCTTGGCC	59.437	45.455	0.00	0.00	36.82	5.36
1886	1891	6.971184	ACGAAGTTCCAAGTAATACTGTATCG	59.029	38.462	0.00	1.40	37.78	2.92
1977	1986	8.624367	AATGGATGAATTTTCTGCATTTTGAA	57.376	26.923	0.00	0.00	29.48	2.69
1978	1987	8.624367	AAATGGATGAATTTTCTGCATTTTGA	57.376	26.923	12.12	0.00	35.31	2.69
2005	2014	4.281435	TGACATCAAACATCAGGCAACAAT	59.719	37.500	0.00	0.00	41.41	2.71
2061	2097	3.126831	GAGGCAAACTCATATGACTCGG	58.873	50.000	0.00	0.00	41.54	4.63
2177	2224	1.685224	CCAGAGGTAGGCAGCCAAA	59.315	57.895	15.80	0.00	0.00	3.28
2247	2313	1.606668	TCGTGTTTGTCTTGCAATCCC	59.393	47.619	0.00	0.00	36.89	3.85
2251	2317	9.767684	CTATTTTATATCGTGTTTGTCTTGCAA	57.232	29.630	0.00	0.00	34.87	4.08
2303	2370	4.464069	ACTGTTGAGAGAGCCATTACTC	57.536	45.455	0.00	0.00	36.91	2.59
2311	2378	4.647424	ATAGCACTACTGTTGAGAGAGC	57.353	45.455	0.00	0.00	0.00	4.09
2511	2672	6.324561	TGCAATGTATTTTTACAGTCAGCA	57.675	33.333	0.00	0.00	32.97	4.41
2512	2673	7.756722	AGATTGCAATGTATTTTTACAGTCAGC	59.243	33.333	18.59	0.00	32.97	4.26
2513	2674	9.282247	GAGATTGCAATGTATTTTTACAGTCAG	57.718	33.333	18.59	0.00	32.97	3.51
2514	2675	9.013229	AGAGATTGCAATGTATTTTTACAGTCA	57.987	29.630	18.59	0.00	32.97	3.41
2544	2711	9.347240	CAGTGAATCAAGGTCAATATTTCCTAT	57.653	33.333	8.76	0.00	0.00	2.57
2556	2723	8.723942	AATAACATAGACAGTGAATCAAGGTC	57.276	34.615	0.00	7.27	0.00	3.85
2662	3003	1.432514	CGGTGACTGGTGACAATGAG	58.567	55.000	0.00	0.00	42.06	2.90
2663	3004	0.034756	CCGGTGACTGGTGACAATGA	59.965	55.000	1.22	0.00	42.06	2.57
2664	3005	0.034756	TCCGGTGACTGGTGACAATG	59.965	55.000	10.78	0.00	42.06	2.82
2665	3006	0.762418	TTCCGGTGACTGGTGACAAT	59.238	50.000	10.78	0.00	42.06	2.71
2666	3007	0.105964	CTTCCGGTGACTGGTGACAA	59.894	55.000	10.78	0.00	42.06	3.18
2667	3008	0.757561	TCTTCCGGTGACTGGTGACA	60.758	55.000	10.78	0.00	39.59	3.58
2668	3009	0.038159	CTCTTCCGGTGACTGGTGAC	60.038	60.000	10.78	0.00	0.00	3.67
2670	3011	1.374758	GCTCTTCCGGTGACTGGTG	60.375	63.158	10.78	5.18	0.00	4.17
2671	3012	2.932234	CGCTCTTCCGGTGACTGGT	61.932	63.158	10.78	0.00	0.00	4.00
2673	3014	1.734477	CACGCTCTTCCGGTGACTG	60.734	63.158	0.00	0.00	0.00	3.51
2674	3015	1.867919	CTCACGCTCTTCCGGTGACT	61.868	60.000	0.00	0.00	0.00	3.41
2675	3016	1.444553	CTCACGCTCTTCCGGTGAC	60.445	63.158	0.00	0.00	0.00	3.67
2677	3018	0.803768	CATCTCACGCTCTTCCGGTG	60.804	60.000	0.00	0.00	0.00	4.94
2679	3020	1.227089	CCATCTCACGCTCTTCCGG	60.227	63.158	0.00	0.00	0.00	5.14
2680	3021	0.803768	CACCATCTCACGCTCTTCCG	60.804	60.000	0.00	0.00	0.00	4.30
2681	3022	1.086634	GCACCATCTCACGCTCTTCC	61.087	60.000	0.00	0.00	0.00	3.46
2682	3023	0.108424	AGCACCATCTCACGCTCTTC	60.108	55.000	0.00	0.00	0.00	2.87
2683	3024	1.186200	TAGCACCATCTCACGCTCTT	58.814	50.000	0.00	0.00	35.93	2.85
2684	3025	1.186200	TTAGCACCATCTCACGCTCT	58.814	50.000	0.00	0.00	35.93	4.09
2685	3026	2.010145	TTTAGCACCATCTCACGCTC	57.990	50.000	0.00	0.00	35.93	5.03
2686	3027	2.093500	TGATTTAGCACCATCTCACGCT	60.093	45.455	0.00	0.00	38.51	5.07
2687	3028	2.279741	TGATTTAGCACCATCTCACGC	58.720	47.619	0.00	0.00	0.00	5.34
2688	3029	4.631377	TCTTTGATTTAGCACCATCTCACG	59.369	41.667	0.00	0.00	0.00	4.35
2689	3030	6.500684	TTCTTTGATTTAGCACCATCTCAC	57.499	37.500	0.00	0.00	0.00	3.51
2691	3032	7.094634	TGACTTTCTTTGATTTAGCACCATCTC	60.095	37.037	0.00	0.00	0.00	2.75
2692	3033	6.716628	TGACTTTCTTTGATTTAGCACCATCT	59.283	34.615	0.00	0.00	0.00	2.90
2693	3034	6.913170	TGACTTTCTTTGATTTAGCACCATC	58.087	36.000	0.00	0.00	0.00	3.51
2694	3035	6.899393	TGACTTTCTTTGATTTAGCACCAT	57.101	33.333	0.00	0.00	0.00	3.55
2696	3037	5.631096	GCTTGACTTTCTTTGATTTAGCACC	59.369	40.000	0.00	0.00	0.00	5.01
2698	3039	5.278957	GGGCTTGACTTTCTTTGATTTAGCA	60.279	40.000	0.00	0.00	0.00	3.49
2700	3041	5.243730	TGGGGCTTGACTTTCTTTGATTTAG	59.756	40.000	0.00	0.00	0.00	1.85
2702	3043	3.966665	TGGGGCTTGACTTTCTTTGATTT	59.033	39.130	0.00	0.00	0.00	2.17
2703	3044	3.575805	TGGGGCTTGACTTTCTTTGATT	58.424	40.909	0.00	0.00	0.00	2.57
2704	3045	3.243359	TGGGGCTTGACTTTCTTTGAT	57.757	42.857	0.00	0.00	0.00	2.57
2705	3046	2.746279	TGGGGCTTGACTTTCTTTGA	57.254	45.000	0.00	0.00	0.00	2.69
2706	3047	2.546584	GCTTGGGGCTTGACTTTCTTTG	60.547	50.000	0.00	0.00	38.06	2.77
2707	3048	1.688735	GCTTGGGGCTTGACTTTCTTT	59.311	47.619	0.00	0.00	38.06	2.52
2708	3049	1.332195	GCTTGGGGCTTGACTTTCTT	58.668	50.000	0.00	0.00	38.06	2.52
2710	3051	0.540597	AGGCTTGGGGCTTGACTTTC	60.541	55.000	0.00	0.00	46.62	2.62
2712	3053	3.265601	AGGCTTGGGGCTTGACTT	58.734	55.556	0.00	0.00	46.62	3.01
2717	3058	1.305623	CTCATCAGGCTTGGGGCTT	59.694	57.895	0.00	0.00	46.62	4.35
2719	3060	1.751927	CACTCATCAGGCTTGGGGC	60.752	63.158	0.00	0.00	40.90	5.80
2720	3061	1.751927	GCACTCATCAGGCTTGGGG	60.752	63.158	0.00	0.00	0.00	4.96
2721	3062	2.110967	CGCACTCATCAGGCTTGGG	61.111	63.158	0.00	0.00	0.00	4.12
2725	3066	1.548357	AACTCCGCACTCATCAGGCT	61.548	55.000	0.00	0.00	0.00	4.58
2726	3067	0.175760	TAACTCCGCACTCATCAGGC	59.824	55.000	0.00	0.00	0.00	4.85
2727	3068	1.751351	TCTAACTCCGCACTCATCAGG	59.249	52.381	0.00	0.00	0.00	3.86
2740	3097	4.810191	TTCCTTCCTGCTCTTCTAACTC	57.190	45.455	0.00	0.00	0.00	3.01
2746	3103	4.583871	TCTCATTTTCCTTCCTGCTCTTC	58.416	43.478	0.00	0.00	0.00	2.87
2752	3109	4.677250	GCAAGCATCTCATTTTCCTTCCTG	60.677	45.833	0.00	0.00	0.00	3.86
2791	3149	3.721706	CCCCTTCCCTTGCTCGCT	61.722	66.667	0.00	0.00	0.00	4.93
2799	3157	2.849071	GAAGCTCCTCCCCCTTCCCT	62.849	65.000	0.00	0.00	31.16	4.20
2838	3202	2.202479	GAAAATGTCGCCGCTGGC	60.202	61.111	9.20	9.20	46.75	4.85
2839	3203	1.135315	CAGAAAATGTCGCCGCTGG	59.865	57.895	0.00	0.00	0.00	4.85
2840	3204	0.179215	GTCAGAAAATGTCGCCGCTG	60.179	55.000	0.00	0.00	0.00	5.18
2841	3205	0.602638	TGTCAGAAAATGTCGCCGCT	60.603	50.000	0.00	0.00	0.00	5.52
2842	3206	0.447801	ATGTCAGAAAATGTCGCCGC	59.552	50.000	0.00	0.00	0.00	6.53
2855	3219	5.739752	TTGTTTCTGTCAGTCAATGTCAG	57.260	39.130	0.00	0.00	43.80	3.51
2857	3221	5.973565	CCTTTTGTTTCTGTCAGTCAATGTC	59.026	40.000	0.00	0.00	0.00	3.06

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.