Multiple sequence alignment - TraesCS2D01G532100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G532100 chr2D 100.000 4319 0 0 1 4319 617537824 617542142 0.000000e+00 7976.0
1 TraesCS2D01G532100 chr2D 92.868 2566 156 15 819 3368 617887105 617889659 0.000000e+00 3699.0
2 TraesCS2D01G532100 chr2D 91.840 2647 185 11 750 3366 617910075 617907430 0.000000e+00 3663.0
3 TraesCS2D01G532100 chr2D 90.906 2606 209 14 819 3404 617633628 617636225 0.000000e+00 3474.0
4 TraesCS2D01G532100 chr2D 90.249 2646 220 22 732 3368 617546188 617548804 0.000000e+00 3422.0
5 TraesCS2D01G532100 chr2D 97.934 242 4 1 3689 3930 617902048 617901808 6.680000e-113 418.0
6 TraesCS2D01G532100 chr2D 80.930 215 38 3 397 611 617902960 617902749 2.670000e-37 167.0
7 TraesCS2D01G532100 chr2D 85.443 158 16 4 4006 4163 617763713 617763863 1.610000e-34 158.0
8 TraesCS2D01G532100 chr2D 95.789 95 4 0 3621 3715 617763361 617763455 2.080000e-33 154.0
9 TraesCS2D01G532100 chr2D 88.060 67 4 4 3686 3752 617906453 617906391 4.630000e-10 76.8
10 TraesCS2D01G532100 chr2D 84.615 78 9 2 3529 3606 617906567 617906641 1.670000e-09 75.0
11 TraesCS2D01G532100 chr2D 97.500 40 1 0 3401 3440 617636280 617636319 7.750000e-08 69.4
12 TraesCS2D01G532100 chr2A 92.816 2436 164 5 969 3404 746620353 746622777 0.000000e+00 3518.0
13 TraesCS2D01G532100 chr2A 92.323 2449 174 3 934 3368 748437458 748439906 0.000000e+00 3469.0
14 TraesCS2D01G532100 chr2A 89.752 2576 210 30 799 3368 748284968 748287495 0.000000e+00 3245.0
15 TraesCS2D01G532100 chr2A 88.767 2644 254 12 745 3368 748503856 748501236 0.000000e+00 3197.0
16 TraesCS2D01G532100 chr2A 91.544 1963 142 5 849 2809 748203873 748205813 0.000000e+00 2684.0
17 TraesCS2D01G532100 chr2A 97.455 393 9 1 3927 4319 748222758 748223149 0.000000e+00 669.0
18 TraesCS2D01G532100 chr2A 82.430 683 61 17 179 815 748203211 748203880 3.800000e-150 542.0
19 TraesCS2D01G532100 chr2A 88.767 365 13 2 3617 3981 748463885 748463549 5.160000e-114 422.0
20 TraesCS2D01G532100 chr2A 95.455 242 6 2 3689 3930 748451933 748451697 8.760000e-102 381.0
21 TraesCS2D01G532100 chr2A 98.500 200 3 0 3618 3817 748222545 748222744 1.910000e-93 353.0
22 TraesCS2D01G532100 chr2A 93.074 231 14 2 3748 3978 748288652 748288880 1.920000e-88 337.0
23 TraesCS2D01G532100 chr2A 89.695 262 15 8 3689 3946 746623626 746623879 1.500000e-84 324.0
24 TraesCS2D01G532100 chr2A 95.531 179 2 2 3435 3607 748222423 748222245 9.140000e-72 281.0
25 TraesCS2D01G532100 chr2A 90.062 161 10 3 4006 4162 748460282 748460124 2.040000e-48 204.0
26 TraesCS2D01G532100 chr2A 92.742 124 9 0 4006 4129 748289183 748289306 3.430000e-41 180.0
27 TraesCS2D01G532100 chr2A 91.935 124 10 0 4006 4129 748451171 748451048 1.600000e-39 174.0
28 TraesCS2D01G532100 chr2A 90.226 133 7 3 3623 3753 748288468 748288596 7.430000e-38 169.0
29 TraesCS2D01G532100 chr2A 87.611 113 5 4 3834 3946 748451677 748451574 5.870000e-24 122.0
30 TraesCS2D01G532100 chr2A 90.789 76 6 1 3617 3691 748211109 748211184 2.750000e-17 100.0
31 TraesCS2D01G532100 chr2A 97.500 40 1 0 3401 3440 746622832 746622871 7.750000e-08 69.4
32 TraesCS2D01G532100 chr2A 97.500 40 1 0 3401 3440 748210392 748210431 7.750000e-08 69.4
33 TraesCS2D01G532100 chr2A 97.500 40 1 0 3401 3440 748452712 748452673 7.750000e-08 69.4
34 TraesCS2D01G532100 chr2A 97.500 40 1 0 3401 3440 748464589 748464550 7.750000e-08 69.4
35 TraesCS2D01G532100 chr2B 92.547 2415 177 3 976 3390 753792772 753795183 0.000000e+00 3459.0
36 TraesCS2D01G532100 chr2B 88.731 2680 243 21 732 3404 753931543 753928916 0.000000e+00 3221.0
37 TraesCS2D01G532100 chr2B 91.484 364 24 3 3617 3978 753796046 753796404 1.080000e-135 494.0
38 TraesCS2D01G532100 chr2B 91.413 361 15 5 3621 3981 753933822 753933478 8.400000e-132 481.0
39 TraesCS2D01G532100 chr2B 94.667 225 8 2 3748 3968 753788568 753788792 3.200000e-91 346.0
40 TraesCS2D01G532100 chr2B 88.205 195 18 4 344 535 753785827 753786019 1.210000e-55 228.0
41 TraesCS2D01G532100 chr2B 87.879 198 19 4 344 538 753808426 753808231 1.210000e-55 228.0
42 TraesCS2D01G532100 chr2B 86.124 209 22 7 397 603 753940089 753939886 7.270000e-53 219.0
43 TraesCS2D01G532100 chr2B 96.694 121 3 1 4042 4162 753933063 753932944 2.630000e-47 200.0
44 TraesCS2D01G532100 chr2B 89.474 152 9 3 744 889 753938936 753938786 7.380000e-43 185.0
45 TraesCS2D01G532100 chr2B 91.870 123 10 0 4007 4129 753789293 753789415 5.740000e-39 172.0
46 TraesCS2D01G532100 chr2B 97.500 40 1 0 3401 3440 753795245 753795284 7.750000e-08 69.4
47 TraesCS2D01G532100 chr2B 97.500 40 1 0 3401 3440 753934624 753934585 7.750000e-08 69.4
48 TraesCS2D01G532100 chr2B 95.122 41 1 1 3401 3440 753788052 753788092 3.610000e-06 63.9
49 TraesCS2D01G532100 chr3A 87.943 141 12 5 425 562 25368113 25367975 1.240000e-35 161.0
50 TraesCS2D01G532100 chr3A 90.000 120 9 3 441 559 8598684 8598801 7.480000e-33 152.0
51 TraesCS2D01G532100 chr7B 89.147 129 10 3 732 857 726150060 726150187 1.610000e-34 158.0
52 TraesCS2D01G532100 chr7B 91.379 58 4 1 4196 4252 50625282 50625339 1.290000e-10 78.7
53 TraesCS2D01G532100 chr6B 90.000 120 9 3 444 562 566524727 566524610 7.480000e-33 152.0
54 TraesCS2D01G532100 chr1D 85.616 146 20 1 397 541 9877864 9878009 7.480000e-33 152.0
55 TraesCS2D01G532100 chr3B 82.609 69 8 3 4213 4281 809338026 809338090 1.680000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G532100 chr2D 617537824 617542142 4318 False 7976.000000 7976 100.000000 1 4319 1 chr2D.!!$F1 4318
1 TraesCS2D01G532100 chr2D 617887105 617889659 2554 False 3699.000000 3699 92.868000 819 3368 1 chr2D.!!$F3 2549
2 TraesCS2D01G532100 chr2D 617546188 617548804 2616 False 3422.000000 3422 90.249000 732 3368 1 chr2D.!!$F2 2636
3 TraesCS2D01G532100 chr2D 617633628 617636319 2691 False 1771.700000 3474 94.203000 819 3440 2 chr2D.!!$F5 2621
4 TraesCS2D01G532100 chr2D 617901808 617910075 8267 True 1081.200000 3663 89.691000 397 3930 4 chr2D.!!$R1 3533
5 TraesCS2D01G532100 chr2A 748437458 748439906 2448 False 3469.000000 3469 92.323000 934 3368 1 chr2A.!!$F1 2434
6 TraesCS2D01G532100 chr2A 748501236 748503856 2620 True 3197.000000 3197 88.767000 745 3368 1 chr2A.!!$R2 2623
7 TraesCS2D01G532100 chr2A 748203211 748205813 2602 False 1613.000000 2684 86.987000 179 2809 2 chr2A.!!$F3 2630
8 TraesCS2D01G532100 chr2A 746620353 746623879 3526 False 1303.800000 3518 93.337000 969 3946 3 chr2A.!!$F2 2977
9 TraesCS2D01G532100 chr2A 748284968 748289306 4338 False 982.750000 3245 91.448500 799 4129 4 chr2A.!!$F6 3330
10 TraesCS2D01G532100 chr2A 748222545 748223149 604 False 511.000000 669 97.977500 3618 4319 2 chr2A.!!$F5 701
11 TraesCS2D01G532100 chr2A 748460124 748464589 4465 True 231.800000 422 92.109667 3401 4162 3 chr2A.!!$R4 761
12 TraesCS2D01G532100 chr2B 753928916 753934624 5708 True 992.850000 3221 93.584500 732 4162 4 chr2B.!!$R2 3430
13 TraesCS2D01G532100 chr2B 753785827 753796404 10577 False 690.328571 3459 93.056429 344 4129 7 chr2B.!!$F1 3785
14 TraesCS2D01G532100 chr2B 753938786 753940089 1303 True 202.000000 219 87.799000 397 889 2 chr2B.!!$R3 492

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
34 35 0.036164 TGAACATGACCCAGAACCCG 59.964 55.0 0.00 0.0 0.0 5.28 F
35 36 0.323629 GAACATGACCCAGAACCCGA 59.676 55.0 0.00 0.0 0.0 5.14 F
42 43 0.326618 ACCCAGAACCCGATCTCCAT 60.327 55.0 0.00 0.0 0.0 3.41 F
1689 8987 0.465460 GCAAATCCGGAGCCATGGTA 60.465 55.0 14.67 0.0 0.0 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1434 8732 0.465278 GCCCCTTGAGGAGATTGCTC 60.465 60.000 0.00 0.00 38.24 4.26 R
1566 8864 5.007724 CGCTTTGTCTACTTCACCTTCTTTT 59.992 40.000 0.00 0.00 0.00 2.27 R
1737 9035 6.040504 TCAGGCTAGTATATGTCATGACGTTT 59.959 38.462 24.93 19.17 0.00 3.60 R
3510 11012 0.107165 GCCCAATAGTCACCACCCTC 60.107 60.000 0.00 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.066291 ACACTTCAACACACCTGAACA 57.934 42.857 0.00 0.00 0.00 3.18
21 22 3.620488 ACACTTCAACACACCTGAACAT 58.380 40.909 0.00 0.00 0.00 2.71
22 23 3.378112 ACACTTCAACACACCTGAACATG 59.622 43.478 0.00 0.00 0.00 3.21
23 24 3.627123 CACTTCAACACACCTGAACATGA 59.373 43.478 0.00 0.00 0.00 3.07
24 25 3.627577 ACTTCAACACACCTGAACATGAC 59.372 43.478 0.00 0.00 0.00 3.06
25 26 2.571212 TCAACACACCTGAACATGACC 58.429 47.619 0.00 0.00 0.00 4.02
26 27 1.608590 CAACACACCTGAACATGACCC 59.391 52.381 0.00 0.00 0.00 4.46
27 28 0.843309 ACACACCTGAACATGACCCA 59.157 50.000 0.00 0.00 0.00 4.51
28 29 1.202806 ACACACCTGAACATGACCCAG 60.203 52.381 0.00 3.29 0.00 4.45
29 30 1.072173 CACACCTGAACATGACCCAGA 59.928 52.381 0.00 0.00 0.00 3.86
30 31 1.774254 ACACCTGAACATGACCCAGAA 59.226 47.619 0.00 0.00 0.00 3.02
31 32 2.154462 CACCTGAACATGACCCAGAAC 58.846 52.381 0.00 0.00 0.00 3.01
32 33 1.073923 ACCTGAACATGACCCAGAACC 59.926 52.381 0.00 0.00 0.00 3.62
33 34 1.614317 CCTGAACATGACCCAGAACCC 60.614 57.143 0.00 0.00 0.00 4.11
34 35 0.036164 TGAACATGACCCAGAACCCG 59.964 55.000 0.00 0.00 0.00 5.28
35 36 0.323629 GAACATGACCCAGAACCCGA 59.676 55.000 0.00 0.00 0.00 5.14
36 37 0.991920 AACATGACCCAGAACCCGAT 59.008 50.000 0.00 0.00 0.00 4.18
37 38 0.541863 ACATGACCCAGAACCCGATC 59.458 55.000 0.00 0.00 0.00 3.69
38 39 0.833287 CATGACCCAGAACCCGATCT 59.167 55.000 0.00 0.00 0.00 2.75
39 40 1.123928 ATGACCCAGAACCCGATCTC 58.876 55.000 0.00 0.00 0.00 2.75
40 41 0.976073 TGACCCAGAACCCGATCTCC 60.976 60.000 0.00 0.00 0.00 3.71
41 42 0.976073 GACCCAGAACCCGATCTCCA 60.976 60.000 0.00 0.00 0.00 3.86
42 43 0.326618 ACCCAGAACCCGATCTCCAT 60.327 55.000 0.00 0.00 0.00 3.41
43 44 0.839946 CCCAGAACCCGATCTCCATT 59.160 55.000 0.00 0.00 0.00 3.16
44 45 2.047061 CCCAGAACCCGATCTCCATTA 58.953 52.381 0.00 0.00 0.00 1.90
45 46 2.438021 CCCAGAACCCGATCTCCATTAA 59.562 50.000 0.00 0.00 0.00 1.40
46 47 3.073062 CCCAGAACCCGATCTCCATTAAT 59.927 47.826 0.00 0.00 0.00 1.40
47 48 4.286032 CCCAGAACCCGATCTCCATTAATA 59.714 45.833 0.00 0.00 0.00 0.98
48 49 5.045578 CCCAGAACCCGATCTCCATTAATAT 60.046 44.000 0.00 0.00 0.00 1.28
49 50 6.109359 CCAGAACCCGATCTCCATTAATATC 58.891 44.000 0.00 0.00 0.00 1.63
50 51 6.070538 CCAGAACCCGATCTCCATTAATATCT 60.071 42.308 0.00 0.00 0.00 1.98
51 52 6.815641 CAGAACCCGATCTCCATTAATATCTG 59.184 42.308 0.00 0.00 0.00 2.90
52 53 6.498651 AGAACCCGATCTCCATTAATATCTGT 59.501 38.462 0.00 0.00 0.00 3.41
53 54 6.287589 ACCCGATCTCCATTAATATCTGTC 57.712 41.667 0.00 0.00 0.00 3.51
54 55 6.019748 ACCCGATCTCCATTAATATCTGTCT 58.980 40.000 0.00 0.00 0.00 3.41
55 56 6.071108 ACCCGATCTCCATTAATATCTGTCTG 60.071 42.308 0.00 0.00 0.00 3.51
56 57 6.153510 CCCGATCTCCATTAATATCTGTCTGA 59.846 42.308 0.00 0.00 0.00 3.27
57 58 7.310052 CCCGATCTCCATTAATATCTGTCTGAA 60.310 40.741 0.00 0.00 0.00 3.02
58 59 7.758980 CCGATCTCCATTAATATCTGTCTGAAG 59.241 40.741 0.00 0.00 0.00 3.02
59 60 7.758980 CGATCTCCATTAATATCTGTCTGAAGG 59.241 40.741 0.00 0.00 0.00 3.46
60 61 7.921041 TCTCCATTAATATCTGTCTGAAGGT 57.079 36.000 0.00 0.00 0.00 3.50
61 62 7.957002 TCTCCATTAATATCTGTCTGAAGGTC 58.043 38.462 0.00 0.00 0.00 3.85
62 63 7.786943 TCTCCATTAATATCTGTCTGAAGGTCT 59.213 37.037 0.00 0.00 0.00 3.85
63 64 7.957002 TCCATTAATATCTGTCTGAAGGTCTC 58.043 38.462 0.00 0.00 0.00 3.36
64 65 7.015682 TCCATTAATATCTGTCTGAAGGTCTCC 59.984 40.741 0.00 0.00 0.00 3.71
65 66 7.016072 CCATTAATATCTGTCTGAAGGTCTCCT 59.984 40.741 0.00 0.00 33.87 3.69
76 77 2.246091 AGGTCTCCTTCCTCCTTCTG 57.754 55.000 0.00 0.00 0.00 3.02
77 78 1.435168 AGGTCTCCTTCCTCCTTCTGT 59.565 52.381 0.00 0.00 0.00 3.41
78 79 1.828595 GGTCTCCTTCCTCCTTCTGTC 59.171 57.143 0.00 0.00 0.00 3.51
79 80 2.530701 GTCTCCTTCCTCCTTCTGTCA 58.469 52.381 0.00 0.00 0.00 3.58
80 81 2.900546 GTCTCCTTCCTCCTTCTGTCAA 59.099 50.000 0.00 0.00 0.00 3.18
81 82 3.325135 GTCTCCTTCCTCCTTCTGTCAAA 59.675 47.826 0.00 0.00 0.00 2.69
82 83 4.019771 GTCTCCTTCCTCCTTCTGTCAAAT 60.020 45.833 0.00 0.00 0.00 2.32
83 84 4.019860 TCTCCTTCCTCCTTCTGTCAAATG 60.020 45.833 0.00 0.00 0.00 2.32
84 85 3.909995 TCCTTCCTCCTTCTGTCAAATGA 59.090 43.478 0.00 0.00 0.00 2.57
85 86 4.350816 TCCTTCCTCCTTCTGTCAAATGAA 59.649 41.667 0.00 0.00 0.00 2.57
86 87 4.699257 CCTTCCTCCTTCTGTCAAATGAAG 59.301 45.833 0.00 0.00 39.32 3.02
87 88 4.982241 TCCTCCTTCTGTCAAATGAAGT 57.018 40.909 0.00 0.00 38.30 3.01
88 89 5.310409 TCCTCCTTCTGTCAAATGAAGTT 57.690 39.130 0.00 0.00 38.30 2.66
89 90 5.065914 TCCTCCTTCTGTCAAATGAAGTTG 58.934 41.667 0.00 0.00 38.30 3.16
90 91 5.065914 CCTCCTTCTGTCAAATGAAGTTGA 58.934 41.667 0.00 0.00 38.30 3.18
91 92 5.532406 CCTCCTTCTGTCAAATGAAGTTGAA 59.468 40.000 0.00 0.00 39.18 2.69
92 93 6.377327 TCCTTCTGTCAAATGAAGTTGAAC 57.623 37.500 0.00 0.00 39.18 3.18
93 94 5.885352 TCCTTCTGTCAAATGAAGTTGAACA 59.115 36.000 0.00 0.00 39.18 3.18
94 95 6.547141 TCCTTCTGTCAAATGAAGTTGAACAT 59.453 34.615 0.00 0.00 39.18 2.71
95 96 6.639686 CCTTCTGTCAAATGAAGTTGAACATG 59.360 38.462 0.00 0.00 39.18 3.21
96 97 6.075762 TCTGTCAAATGAAGTTGAACATGG 57.924 37.500 0.00 0.00 39.18 3.66
97 98 5.827267 TCTGTCAAATGAAGTTGAACATGGA 59.173 36.000 0.00 0.00 39.18 3.41
98 99 6.320926 TCTGTCAAATGAAGTTGAACATGGAA 59.679 34.615 0.00 0.00 39.18 3.53
99 100 6.871844 TGTCAAATGAAGTTGAACATGGAAA 58.128 32.000 0.00 0.00 39.18 3.13
100 101 7.499292 TGTCAAATGAAGTTGAACATGGAAAT 58.501 30.769 0.00 0.00 39.18 2.17
101 102 7.652909 TGTCAAATGAAGTTGAACATGGAAATC 59.347 33.333 0.00 0.00 39.18 2.17
102 103 7.652909 GTCAAATGAAGTTGAACATGGAAATCA 59.347 33.333 0.00 0.00 39.18 2.57
103 104 7.652909 TCAAATGAAGTTGAACATGGAAATCAC 59.347 33.333 0.00 0.00 34.59 3.06
104 105 6.653526 ATGAAGTTGAACATGGAAATCACA 57.346 33.333 0.00 0.00 0.00 3.58
105 106 6.462552 TGAAGTTGAACATGGAAATCACAA 57.537 33.333 0.00 0.00 0.00 3.33
106 107 6.506147 TGAAGTTGAACATGGAAATCACAAG 58.494 36.000 0.00 0.00 0.00 3.16
107 108 6.096705 TGAAGTTGAACATGGAAATCACAAGT 59.903 34.615 0.00 0.00 0.00 3.16
108 109 6.076981 AGTTGAACATGGAAATCACAAGTC 57.923 37.500 0.00 0.00 0.00 3.01
109 110 5.593909 AGTTGAACATGGAAATCACAAGTCA 59.406 36.000 0.00 0.00 0.00 3.41
110 111 5.694231 TGAACATGGAAATCACAAGTCAG 57.306 39.130 0.00 0.00 0.00 3.51
111 112 4.022935 TGAACATGGAAATCACAAGTCAGC 60.023 41.667 0.00 0.00 0.00 4.26
112 113 3.489355 ACATGGAAATCACAAGTCAGCA 58.511 40.909 0.00 0.00 0.00 4.41
113 114 3.504906 ACATGGAAATCACAAGTCAGCAG 59.495 43.478 0.00 0.00 0.00 4.24
114 115 3.213206 TGGAAATCACAAGTCAGCAGT 57.787 42.857 0.00 0.00 0.00 4.40
115 116 2.880268 TGGAAATCACAAGTCAGCAGTG 59.120 45.455 0.00 0.00 34.67 3.66
116 117 3.141398 GGAAATCACAAGTCAGCAGTGA 58.859 45.455 0.00 0.00 45.26 3.41
122 123 4.960938 TCACAAGTCAGCAGTGATTAACT 58.039 39.130 0.00 0.00 40.93 2.24
123 124 6.096673 TCACAAGTCAGCAGTGATTAACTA 57.903 37.500 0.00 0.00 36.83 2.24
124 125 6.701340 TCACAAGTCAGCAGTGATTAACTAT 58.299 36.000 0.00 0.00 36.83 2.12
125 126 7.836842 TCACAAGTCAGCAGTGATTAACTATA 58.163 34.615 0.00 0.00 36.83 1.31
126 127 8.311109 TCACAAGTCAGCAGTGATTAACTATAA 58.689 33.333 0.00 0.00 36.83 0.98
127 128 8.598924 CACAAGTCAGCAGTGATTAACTATAAG 58.401 37.037 0.00 0.00 36.83 1.73
128 129 8.531982 ACAAGTCAGCAGTGATTAACTATAAGA 58.468 33.333 0.00 0.00 36.83 2.10
129 130 9.539825 CAAGTCAGCAGTGATTAACTATAAGAT 57.460 33.333 0.00 0.00 36.83 2.40
131 132 9.539825 AGTCAGCAGTGATTAACTATAAGATTG 57.460 33.333 0.00 0.00 36.83 2.67
132 133 9.319143 GTCAGCAGTGATTAACTATAAGATTGT 57.681 33.333 0.00 0.00 36.83 2.71
133 134 9.317936 TCAGCAGTGATTAACTATAAGATTGTG 57.682 33.333 0.00 0.00 36.83 3.33
134 135 9.102757 CAGCAGTGATTAACTATAAGATTGTGT 57.897 33.333 0.00 0.00 36.83 3.72
135 136 9.672673 AGCAGTGATTAACTATAAGATTGTGTT 57.327 29.630 0.00 0.00 36.83 3.32
156 157 7.851387 TGTTACACAACACAAAGTCTATCAA 57.149 32.000 0.00 0.00 39.75 2.57
157 158 8.445275 TGTTACACAACACAAAGTCTATCAAT 57.555 30.769 0.00 0.00 39.75 2.57
158 159 9.549078 TGTTACACAACACAAAGTCTATCAATA 57.451 29.630 0.00 0.00 39.75 1.90
162 163 9.066892 ACACAACACAAAGTCTATCAATAATGT 57.933 29.630 0.00 0.00 0.00 2.71
188 189 5.423015 ACATAGATACAGAACAACAGCAGG 58.577 41.667 0.00 0.00 0.00 4.85
239 240 3.911989 GCATCGTGAGCCAATTCAG 57.088 52.632 0.00 0.00 0.00 3.02
262 280 1.442987 GCTTGGCCTGCAACAAAGT 59.557 52.632 14.81 0.00 0.00 2.66
312 330 6.823689 ACAAGATTATGTTCGTAAGCTTCCAT 59.176 34.615 0.00 1.66 37.99 3.41
324 342 0.608035 GCTTCCATTGTTCCACGGGA 60.608 55.000 0.00 0.00 0.00 5.14
336 354 4.647399 TGTTCCACGGGAAAAGATTTTCTT 59.353 37.500 15.55 0.00 43.86 2.52
339 357 3.317150 CACGGGAAAAGATTTTCTTGGC 58.683 45.455 15.55 1.94 44.49 4.52
367 385 1.512926 AAGTCAGCGTGTCCATGTTC 58.487 50.000 0.00 0.00 0.00 3.18
370 388 2.299013 AGTCAGCGTGTCCATGTTCTTA 59.701 45.455 0.00 0.00 0.00 2.10
377 396 5.011125 AGCGTGTCCATGTTCTTATAGCTAT 59.989 40.000 11.77 11.77 0.00 2.97
405 424 3.626028 AGGAACGTTGATTTTGCTGTC 57.374 42.857 5.00 0.00 0.00 3.51
428 450 7.658167 TGTCAATGAAGAAACGTTGTTATAGGA 59.342 33.333 0.00 0.00 37.81 2.94
463 486 8.397906 CAACAACAGAACAAGAAAATCAGAGTA 58.602 33.333 0.00 0.00 0.00 2.59
625 667 1.966762 AAAAACAGCTGCATCCCCG 59.033 52.632 15.27 0.00 0.00 5.73
626 668 2.158561 AAAAACAGCTGCATCCCCGC 62.159 55.000 15.27 0.00 0.00 6.13
648 705 2.046023 CCACCAGCTGCATCGGAA 60.046 61.111 8.66 0.00 0.00 4.30
650 707 2.110967 CACCAGCTGCATCGGAAGG 61.111 63.158 8.66 0.00 0.00 3.46
680 2786 2.760385 GGTCCTCCCTCCTGTCCG 60.760 72.222 0.00 0.00 0.00 4.79
684 2790 2.360980 CTCCCTCCTGTCCGGACT 59.639 66.667 33.39 0.00 36.69 3.85
685 2791 1.305381 CTCCCTCCTGTCCGGACTT 60.305 63.158 33.39 0.00 36.69 3.01
739 7981 3.155167 CCTACCGGTCCTGCCTCC 61.155 72.222 12.40 0.00 34.25 4.30
1276 8574 2.027625 GCCGTCACCCTCTTCAACG 61.028 63.158 0.00 0.00 0.00 4.10
1401 8699 3.316573 CTTCTTCGGCCGCCTCCTT 62.317 63.158 23.51 0.00 0.00 3.36
1434 8732 2.223203 GCGCTTGAATGTCATCTCCTTG 60.223 50.000 0.00 0.00 0.00 3.61
1566 8864 5.293324 CAGCATAGTAATCAACGGCTGTTTA 59.707 40.000 8.58 0.35 42.54 2.01
1688 8986 1.754234 GCAAATCCGGAGCCATGGT 60.754 57.895 14.67 0.00 0.00 3.55
1689 8987 0.465460 GCAAATCCGGAGCCATGGTA 60.465 55.000 14.67 0.00 0.00 3.25
1721 9019 1.376683 TCCTTCGGCGAATGGTTGG 60.377 57.895 23.96 19.53 0.00 3.77
1722 9020 2.485122 CTTCGGCGAATGGTTGGC 59.515 61.111 23.96 0.00 0.00 4.52
2151 9449 3.679389 AGTAATGAGGCAACAAGGAGTG 58.321 45.455 0.00 0.00 41.41 3.51
2191 9489 8.888836 TGGCTATCAAATCATAATGGATTCAT 57.111 30.769 0.00 0.00 36.51 2.57
2339 9637 5.299148 TGTGAAAGCCAAGGAATTGATTTG 58.701 37.500 0.00 0.00 0.00 2.32
2505 9803 4.525996 TGTACAATTCACTGATGGATGGG 58.474 43.478 0.00 0.00 0.00 4.00
3445 10947 8.970691 ATTTATCAACATCCAAGTTTCTTTCG 57.029 30.769 0.00 0.00 0.00 3.46
3446 10948 7.504924 TTATCAACATCCAAGTTTCTTTCGT 57.495 32.000 0.00 0.00 0.00 3.85
3447 10949 5.828299 TCAACATCCAAGTTTCTTTCGTT 57.172 34.783 0.00 0.00 0.00 3.85
3448 10950 6.202516 TCAACATCCAAGTTTCTTTCGTTT 57.797 33.333 0.00 0.00 0.00 3.60
3449 10951 6.262601 TCAACATCCAAGTTTCTTTCGTTTC 58.737 36.000 0.00 0.00 0.00 2.78
3451 10953 5.821204 ACATCCAAGTTTCTTTCGTTTCAG 58.179 37.500 0.00 0.00 0.00 3.02
3452 10954 4.287238 TCCAAGTTTCTTTCGTTTCAGC 57.713 40.909 0.00 0.00 0.00 4.26
3454 10956 4.035208 TCCAAGTTTCTTTCGTTTCAGCTC 59.965 41.667 0.00 0.00 0.00 4.09
3457 10959 3.810386 AGTTTCTTTCGTTTCAGCTCCTC 59.190 43.478 0.00 0.00 0.00 3.71
3458 10960 2.457366 TCTTTCGTTTCAGCTCCTCC 57.543 50.000 0.00 0.00 0.00 4.30
3459 10961 1.971357 TCTTTCGTTTCAGCTCCTCCT 59.029 47.619 0.00 0.00 0.00 3.69
3460 10962 3.162666 TCTTTCGTTTCAGCTCCTCCTA 58.837 45.455 0.00 0.00 0.00 2.94
3461 10963 3.056749 TCTTTCGTTTCAGCTCCTCCTAC 60.057 47.826 0.00 0.00 0.00 3.18
3464 10966 2.096248 CGTTTCAGCTCCTCCTACTCT 58.904 52.381 0.00 0.00 0.00 3.24
3465 10967 2.159310 CGTTTCAGCTCCTCCTACTCTG 60.159 54.545 0.00 0.00 0.00 3.35
3467 10969 0.396417 TCAGCTCCTCCTACTCTGCC 60.396 60.000 0.00 0.00 0.00 4.85
3468 10970 0.685785 CAGCTCCTCCTACTCTGCCA 60.686 60.000 0.00 0.00 0.00 4.92
3470 10972 0.686112 GCTCCTCCTACTCTGCCAGT 60.686 60.000 0.00 0.00 39.41 4.00
3471 10973 1.110442 CTCCTCCTACTCTGCCAGTG 58.890 60.000 0.00 0.00 36.43 3.66
3472 10974 0.972983 TCCTCCTACTCTGCCAGTGC 60.973 60.000 0.00 0.00 36.43 4.40
3474 10976 2.185350 CCTACTCTGCCAGTGCCG 59.815 66.667 0.00 0.00 36.43 5.69
3483 10985 3.699894 CCAGTGCCGCCAGAGACT 61.700 66.667 0.00 0.00 0.00 3.24
3485 10987 2.601666 AGTGCCGCCAGAGACTGA 60.602 61.111 0.00 0.00 32.44 3.41
3486 10988 2.125753 GTGCCGCCAGAGACTGAG 60.126 66.667 0.00 0.00 32.44 3.35
3487 10989 2.283173 TGCCGCCAGAGACTGAGA 60.283 61.111 0.00 0.00 32.44 3.27
3489 10991 1.067250 GCCGCCAGAGACTGAGATC 59.933 63.158 0.00 0.00 32.44 2.75
3490 10992 1.670949 GCCGCCAGAGACTGAGATCA 61.671 60.000 0.00 0.00 32.44 2.92
3492 10994 1.202394 CCGCCAGAGACTGAGATCAAG 60.202 57.143 0.00 0.00 32.44 3.02
3493 10995 1.747924 CGCCAGAGACTGAGATCAAGA 59.252 52.381 0.00 0.00 32.44 3.02
3494 10996 2.165234 CGCCAGAGACTGAGATCAAGAA 59.835 50.000 0.00 0.00 32.44 2.52
3495 10997 3.734597 CGCCAGAGACTGAGATCAAGAAG 60.735 52.174 0.00 0.00 32.44 2.85
3496 10998 3.446873 GCCAGAGACTGAGATCAAGAAGA 59.553 47.826 0.00 0.00 32.44 2.87
3497 10999 4.440525 GCCAGAGACTGAGATCAAGAAGAG 60.441 50.000 0.00 0.00 32.44 2.85
3499 11001 5.163622 CCAGAGACTGAGATCAAGAAGAGAC 60.164 48.000 0.00 0.00 32.44 3.36
3500 11002 4.949856 AGAGACTGAGATCAAGAAGAGACC 59.050 45.833 0.00 0.00 0.00 3.85
3501 11003 3.694072 AGACTGAGATCAAGAAGAGACCG 59.306 47.826 0.00 0.00 0.00 4.79
3503 11005 2.426738 CTGAGATCAAGAAGAGACCGCT 59.573 50.000 0.00 0.00 0.00 5.52
3504 11006 2.165234 TGAGATCAAGAAGAGACCGCTG 59.835 50.000 0.00 0.00 0.00 5.18
3505 11007 2.425312 GAGATCAAGAAGAGACCGCTGA 59.575 50.000 0.00 0.00 0.00 4.26
3506 11008 3.030291 AGATCAAGAAGAGACCGCTGAT 58.970 45.455 0.00 0.00 0.00 2.90
3507 11009 2.662006 TCAAGAAGAGACCGCTGATG 57.338 50.000 0.00 0.00 0.00 3.07
3509 11011 2.165234 TCAAGAAGAGACCGCTGATGAG 59.835 50.000 0.00 0.00 0.00 2.90
3510 11012 1.110442 AGAAGAGACCGCTGATGAGG 58.890 55.000 0.00 0.00 39.17 3.86
3513 11015 0.754957 AGAGACCGCTGATGAGGAGG 60.755 60.000 0.00 0.00 36.60 4.30
3514 11016 1.743321 GAGACCGCTGATGAGGAGGG 61.743 65.000 0.00 0.00 36.60 4.30
3515 11017 2.039624 ACCGCTGATGAGGAGGGT 59.960 61.111 0.00 0.00 36.60 4.34
3517 11019 2.503061 CGCTGATGAGGAGGGTGG 59.497 66.667 0.00 0.00 0.00 4.61
3519 11021 1.222936 GCTGATGAGGAGGGTGGTG 59.777 63.158 0.00 0.00 0.00 4.17
3520 11022 1.267574 GCTGATGAGGAGGGTGGTGA 61.268 60.000 0.00 0.00 0.00 4.02
3521 11023 0.539051 CTGATGAGGAGGGTGGTGAC 59.461 60.000 0.00 0.00 0.00 3.67
3523 11025 1.361197 TGATGAGGAGGGTGGTGACTA 59.639 52.381 0.00 0.00 0.00 2.59
3524 11026 2.023015 TGATGAGGAGGGTGGTGACTAT 60.023 50.000 0.00 0.00 0.00 2.12
3525 11027 2.642171 TGAGGAGGGTGGTGACTATT 57.358 50.000 0.00 0.00 0.00 1.73
3528 11030 0.546598 GGAGGGTGGTGACTATTGGG 59.453 60.000 0.00 0.00 0.00 4.12
3529 11031 0.107165 GAGGGTGGTGACTATTGGGC 60.107 60.000 0.00 0.00 0.00 5.36
3530 11032 1.076995 GGGTGGTGACTATTGGGCC 60.077 63.158 0.00 0.00 0.00 5.80
3531 11033 1.688811 GGTGGTGACTATTGGGCCA 59.311 57.895 0.00 0.00 0.00 5.36
3532 11034 0.258774 GGTGGTGACTATTGGGCCAT 59.741 55.000 7.26 0.00 0.00 4.40
3533 11035 1.680338 GTGGTGACTATTGGGCCATC 58.320 55.000 7.26 1.63 0.00 3.51
3534 11036 0.180171 TGGTGACTATTGGGCCATCG 59.820 55.000 7.26 0.73 0.00 3.84
3535 11037 0.468226 GGTGACTATTGGGCCATCGA 59.532 55.000 7.26 0.00 0.00 3.59
3537 11039 2.487265 GGTGACTATTGGGCCATCGAAT 60.487 50.000 7.26 0.00 0.00 3.34
3538 11040 2.549754 GTGACTATTGGGCCATCGAATG 59.450 50.000 7.26 0.00 0.00 2.67
3539 11041 1.537202 GACTATTGGGCCATCGAATGC 59.463 52.381 7.26 0.00 0.00 3.56
3543 11045 3.585990 GGGCCATCGAATGCACCG 61.586 66.667 4.39 4.14 0.00 4.94
3544 11046 2.824041 GGCCATCGAATGCACCGT 60.824 61.111 11.10 0.00 0.00 4.83
3545 11047 2.404789 GCCATCGAATGCACCGTG 59.595 61.111 9.70 0.00 0.00 4.94
3546 11048 3.101209 CCATCGAATGCACCGTGG 58.899 61.111 9.70 11.78 0.00 4.94
3547 11049 1.745115 CCATCGAATGCACCGTGGT 60.745 57.895 16.39 0.00 0.00 4.16
3548 11050 0.461163 CCATCGAATGCACCGTGGTA 60.461 55.000 16.39 0.27 0.00 3.25
3557 11632 1.202710 TGCACCGTGGTACATGTTTCT 60.203 47.619 2.30 0.00 45.33 2.52
3558 11633 1.196808 GCACCGTGGTACATGTTTCTG 59.803 52.381 2.30 0.00 45.33 3.02
3559 11634 1.804151 CACCGTGGTACATGTTTCTGG 59.196 52.381 2.30 2.90 45.33 3.86
3568 11643 5.044919 TGGTACATGTTTCTGGGATGAGAAT 60.045 40.000 2.30 0.00 31.98 2.40
3570 11645 4.530875 ACATGTTTCTGGGATGAGAATCC 58.469 43.478 0.00 0.00 39.99 3.01
3577 11652 2.707902 GGATGAGAATCCCAACGGC 58.292 57.895 0.00 0.00 34.66 5.68
3579 11654 1.303309 GATGAGAATCCCAACGGCAG 58.697 55.000 0.00 0.00 0.00 4.85
3581 11656 1.271856 TGAGAATCCCAACGGCAGTA 58.728 50.000 0.00 0.00 0.00 2.74
3583 11658 0.981183 AGAATCCCAACGGCAGTACA 59.019 50.000 0.00 0.00 0.00 2.90
3585 11660 1.467342 GAATCCCAACGGCAGTACAAC 59.533 52.381 0.00 0.00 0.00 3.32
3586 11661 0.398696 ATCCCAACGGCAGTACAACA 59.601 50.000 0.00 0.00 0.00 3.33
3592 11667 2.319136 ACGGCAGTACAACAAACTGA 57.681 45.000 7.39 0.00 45.89 3.41
3594 11669 2.806244 ACGGCAGTACAACAAACTGATC 59.194 45.455 7.39 0.00 45.89 2.92
3595 11670 2.159627 CGGCAGTACAACAAACTGATCC 59.840 50.000 7.39 0.00 45.89 3.36
3596 11671 3.412386 GGCAGTACAACAAACTGATCCT 58.588 45.455 7.39 0.00 45.89 3.24
3598 11673 4.083271 GGCAGTACAACAAACTGATCCTTC 60.083 45.833 7.39 0.00 45.89 3.46
3599 11674 4.515191 GCAGTACAACAAACTGATCCTTCA 59.485 41.667 7.39 0.00 45.89 3.02
3600 11675 5.560953 GCAGTACAACAAACTGATCCTTCAC 60.561 44.000 7.39 0.00 45.89 3.18
3601 11676 4.750098 AGTACAACAAACTGATCCTTCACG 59.250 41.667 0.00 0.00 0.00 4.35
3602 11677 2.290641 ACAACAAACTGATCCTTCACGC 59.709 45.455 0.00 0.00 0.00 5.34
3603 11678 2.549754 CAACAAACTGATCCTTCACGCT 59.450 45.455 0.00 0.00 0.00 5.07
3604 11679 2.417719 ACAAACTGATCCTTCACGCTC 58.582 47.619 0.00 0.00 0.00 5.03
3607 11682 4.081420 ACAAACTGATCCTTCACGCTCTAT 60.081 41.667 0.00 0.00 0.00 1.98
3609 11684 5.446143 AACTGATCCTTCACGCTCTATAG 57.554 43.478 0.00 0.00 0.00 1.31
3611 11686 4.517453 ACTGATCCTTCACGCTCTATAGTC 59.483 45.833 0.00 0.00 0.00 2.59
3614 11689 3.741249 TCCTTCACGCTCTATAGTCGAT 58.259 45.455 18.75 5.72 0.00 3.59
3866 16685 7.254932 GGGTAGACAATATCTTCTCAACAATGC 60.255 40.741 0.00 0.00 39.04 3.56
4023 20101 6.405953 CGTAGTGTACAATCAGGAGAGGATTT 60.406 42.308 0.00 0.00 32.86 2.17
4221 20301 7.262048 TGAAATTTTGTTACCTCTGTTGTTCC 58.738 34.615 0.00 0.00 0.00 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.066291 TGTTCAGGTGTGTTGAAGTGT 57.934 42.857 0.00 0.00 35.39 3.55
1 2 3.627123 TCATGTTCAGGTGTGTTGAAGTG 59.373 43.478 0.00 0.00 35.39 3.16
2 3 3.627577 GTCATGTTCAGGTGTGTTGAAGT 59.372 43.478 0.00 0.00 35.39 3.01
3 4 3.003689 GGTCATGTTCAGGTGTGTTGAAG 59.996 47.826 0.00 0.00 35.39 3.02
4 5 2.948979 GGTCATGTTCAGGTGTGTTGAA 59.051 45.455 0.00 0.00 32.44 2.69
5 6 2.571212 GGTCATGTTCAGGTGTGTTGA 58.429 47.619 0.00 0.00 0.00 3.18
6 7 1.608590 GGGTCATGTTCAGGTGTGTTG 59.391 52.381 0.00 0.00 0.00 3.33
7 8 1.214175 TGGGTCATGTTCAGGTGTGTT 59.786 47.619 0.00 0.00 0.00 3.32
8 9 0.843309 TGGGTCATGTTCAGGTGTGT 59.157 50.000 0.00 0.00 0.00 3.72
9 10 1.072173 TCTGGGTCATGTTCAGGTGTG 59.928 52.381 10.86 0.00 0.00 3.82
10 11 1.434188 TCTGGGTCATGTTCAGGTGT 58.566 50.000 10.86 0.00 0.00 4.16
11 12 2.154462 GTTCTGGGTCATGTTCAGGTG 58.846 52.381 10.86 0.00 0.00 4.00
12 13 1.073923 GGTTCTGGGTCATGTTCAGGT 59.926 52.381 10.86 0.00 0.00 4.00
13 14 1.614317 GGGTTCTGGGTCATGTTCAGG 60.614 57.143 10.86 0.00 0.00 3.86
14 15 1.826385 GGGTTCTGGGTCATGTTCAG 58.174 55.000 0.00 0.00 0.00 3.02
15 16 0.036164 CGGGTTCTGGGTCATGTTCA 59.964 55.000 0.00 0.00 0.00 3.18
16 17 0.323629 TCGGGTTCTGGGTCATGTTC 59.676 55.000 0.00 0.00 0.00 3.18
17 18 0.991920 ATCGGGTTCTGGGTCATGTT 59.008 50.000 0.00 0.00 0.00 2.71
18 19 0.541863 GATCGGGTTCTGGGTCATGT 59.458 55.000 0.00 0.00 0.00 3.21
19 20 0.833287 AGATCGGGTTCTGGGTCATG 59.167 55.000 0.00 0.00 0.00 3.07
20 21 1.123928 GAGATCGGGTTCTGGGTCAT 58.876 55.000 0.00 0.00 0.00 3.06
21 22 0.976073 GGAGATCGGGTTCTGGGTCA 60.976 60.000 0.00 0.00 0.00 4.02
22 23 0.976073 TGGAGATCGGGTTCTGGGTC 60.976 60.000 0.00 0.00 0.00 4.46
23 24 0.326618 ATGGAGATCGGGTTCTGGGT 60.327 55.000 0.00 0.00 0.00 4.51
24 25 0.839946 AATGGAGATCGGGTTCTGGG 59.160 55.000 0.00 0.00 0.00 4.45
25 26 3.838244 TTAATGGAGATCGGGTTCTGG 57.162 47.619 0.00 0.00 0.00 3.86
26 27 6.815641 CAGATATTAATGGAGATCGGGTTCTG 59.184 42.308 0.00 0.00 0.00 3.02
27 28 6.498651 ACAGATATTAATGGAGATCGGGTTCT 59.501 38.462 0.00 0.00 0.00 3.01
28 29 6.702329 ACAGATATTAATGGAGATCGGGTTC 58.298 40.000 0.00 0.00 0.00 3.62
29 30 6.498651 AGACAGATATTAATGGAGATCGGGTT 59.501 38.462 0.00 0.00 0.00 4.11
30 31 6.019748 AGACAGATATTAATGGAGATCGGGT 58.980 40.000 0.00 0.00 0.00 5.28
31 32 6.153510 TCAGACAGATATTAATGGAGATCGGG 59.846 42.308 0.00 0.00 0.00 5.14
32 33 7.163001 TCAGACAGATATTAATGGAGATCGG 57.837 40.000 0.00 0.00 0.00 4.18
33 34 7.758980 CCTTCAGACAGATATTAATGGAGATCG 59.241 40.741 0.00 0.00 0.00 3.69
34 35 8.592809 ACCTTCAGACAGATATTAATGGAGATC 58.407 37.037 0.00 0.00 0.00 2.75
35 36 8.503428 ACCTTCAGACAGATATTAATGGAGAT 57.497 34.615 0.00 0.00 0.00 2.75
36 37 7.786943 AGACCTTCAGACAGATATTAATGGAGA 59.213 37.037 0.00 0.00 0.00 3.71
37 38 7.961351 AGACCTTCAGACAGATATTAATGGAG 58.039 38.462 0.00 0.00 0.00 3.86
38 39 7.015682 GGAGACCTTCAGACAGATATTAATGGA 59.984 40.741 0.00 0.00 0.00 3.41
39 40 7.016072 AGGAGACCTTCAGACAGATATTAATGG 59.984 40.741 0.00 0.00 0.00 3.16
40 41 7.961351 AGGAGACCTTCAGACAGATATTAATG 58.039 38.462 0.00 0.00 0.00 1.90
41 42 8.560124 AAGGAGACCTTCAGACAGATATTAAT 57.440 34.615 0.00 0.00 40.17 1.40
42 43 7.979786 AAGGAGACCTTCAGACAGATATTAA 57.020 36.000 0.00 0.00 40.17 1.40
57 58 1.435168 ACAGAAGGAGGAAGGAGACCT 59.565 52.381 0.00 0.00 40.80 3.85
58 59 1.828595 GACAGAAGGAGGAAGGAGACC 59.171 57.143 0.00 0.00 0.00 3.85
59 60 2.530701 TGACAGAAGGAGGAAGGAGAC 58.469 52.381 0.00 0.00 0.00 3.36
60 61 3.260269 TTGACAGAAGGAGGAAGGAGA 57.740 47.619 0.00 0.00 0.00 3.71
61 62 4.019860 TCATTTGACAGAAGGAGGAAGGAG 60.020 45.833 0.00 0.00 0.00 3.69
62 63 3.909995 TCATTTGACAGAAGGAGGAAGGA 59.090 43.478 0.00 0.00 0.00 3.36
63 64 4.292186 TCATTTGACAGAAGGAGGAAGG 57.708 45.455 0.00 0.00 0.00 3.46
64 65 5.312079 ACTTCATTTGACAGAAGGAGGAAG 58.688 41.667 7.05 0.00 44.20 3.46
65 66 5.310409 ACTTCATTTGACAGAAGGAGGAA 57.690 39.130 7.05 0.00 44.20 3.36
66 67 4.982241 ACTTCATTTGACAGAAGGAGGA 57.018 40.909 7.05 0.00 44.20 3.71
67 68 5.065914 TCAACTTCATTTGACAGAAGGAGG 58.934 41.667 7.05 1.91 44.20 4.30
68 69 6.038603 TGTTCAACTTCATTTGACAGAAGGAG 59.961 38.462 7.05 0.00 44.20 3.69
69 70 5.885352 TGTTCAACTTCATTTGACAGAAGGA 59.115 36.000 7.05 0.00 44.20 3.36
70 71 6.135290 TGTTCAACTTCATTTGACAGAAGG 57.865 37.500 7.05 0.00 44.20 3.46
71 72 6.639686 CCATGTTCAACTTCATTTGACAGAAG 59.360 38.462 0.00 0.00 45.14 2.85
72 73 6.320926 TCCATGTTCAACTTCATTTGACAGAA 59.679 34.615 0.00 0.00 35.18 3.02
73 74 5.827267 TCCATGTTCAACTTCATTTGACAGA 59.173 36.000 0.00 0.00 35.18 3.41
74 75 6.075762 TCCATGTTCAACTTCATTTGACAG 57.924 37.500 0.00 0.00 35.18 3.51
75 76 6.462552 TTCCATGTTCAACTTCATTTGACA 57.537 33.333 0.00 0.00 35.18 3.58
76 77 7.652909 TGATTTCCATGTTCAACTTCATTTGAC 59.347 33.333 0.00 0.00 35.18 3.18
77 78 7.652909 GTGATTTCCATGTTCAACTTCATTTGA 59.347 33.333 0.00 0.00 33.55 2.69
78 79 7.438757 TGTGATTTCCATGTTCAACTTCATTTG 59.561 33.333 0.00 0.00 0.00 2.32
79 80 7.499292 TGTGATTTCCATGTTCAACTTCATTT 58.501 30.769 0.00 0.00 0.00 2.32
80 81 7.053316 TGTGATTTCCATGTTCAACTTCATT 57.947 32.000 0.00 0.00 0.00 2.57
81 82 6.653526 TGTGATTTCCATGTTCAACTTCAT 57.346 33.333 0.00 0.00 0.00 2.57
82 83 6.096705 ACTTGTGATTTCCATGTTCAACTTCA 59.903 34.615 0.00 0.00 0.00 3.02
83 84 6.507023 ACTTGTGATTTCCATGTTCAACTTC 58.493 36.000 0.00 0.00 0.00 3.01
84 85 6.096705 TGACTTGTGATTTCCATGTTCAACTT 59.903 34.615 0.00 0.00 0.00 2.66
85 86 5.593909 TGACTTGTGATTTCCATGTTCAACT 59.406 36.000 0.00 0.00 0.00 3.16
86 87 5.830912 TGACTTGTGATTTCCATGTTCAAC 58.169 37.500 0.00 0.00 0.00 3.18
87 88 5.507817 GCTGACTTGTGATTTCCATGTTCAA 60.508 40.000 0.00 0.00 0.00 2.69
88 89 4.022935 GCTGACTTGTGATTTCCATGTTCA 60.023 41.667 0.00 0.00 0.00 3.18
89 90 4.022935 TGCTGACTTGTGATTTCCATGTTC 60.023 41.667 0.00 0.00 0.00 3.18
90 91 3.890756 TGCTGACTTGTGATTTCCATGTT 59.109 39.130 0.00 0.00 0.00 2.71
91 92 3.489355 TGCTGACTTGTGATTTCCATGT 58.511 40.909 0.00 0.00 0.00 3.21
92 93 3.504906 ACTGCTGACTTGTGATTTCCATG 59.495 43.478 0.00 0.00 0.00 3.66
93 94 3.504906 CACTGCTGACTTGTGATTTCCAT 59.495 43.478 0.00 0.00 33.95 3.41
94 95 2.880268 CACTGCTGACTTGTGATTTCCA 59.120 45.455 0.00 0.00 33.95 3.53
95 96 3.141398 TCACTGCTGACTTGTGATTTCC 58.859 45.455 0.00 0.00 36.03 3.13
100 101 4.960938 AGTTAATCACTGCTGACTTGTGA 58.039 39.130 0.00 0.00 43.53 3.58
101 102 6.974932 ATAGTTAATCACTGCTGACTTGTG 57.025 37.500 0.00 0.00 35.97 3.33
102 103 8.531982 TCTTATAGTTAATCACTGCTGACTTGT 58.468 33.333 0.00 0.00 35.97 3.16
103 104 8.932945 TCTTATAGTTAATCACTGCTGACTTG 57.067 34.615 0.00 0.00 35.97 3.16
105 106 9.539825 CAATCTTATAGTTAATCACTGCTGACT 57.460 33.333 0.00 0.00 35.97 3.41
106 107 9.319143 ACAATCTTATAGTTAATCACTGCTGAC 57.681 33.333 0.00 0.00 35.97 3.51
107 108 9.317936 CACAATCTTATAGTTAATCACTGCTGA 57.682 33.333 0.00 0.00 35.97 4.26
108 109 9.102757 ACACAATCTTATAGTTAATCACTGCTG 57.897 33.333 0.00 0.00 35.97 4.41
109 110 9.672673 AACACAATCTTATAGTTAATCACTGCT 57.327 29.630 0.00 0.00 35.97 4.24
136 137 9.066892 ACATTATTGATAGACTTTGTGTTGTGT 57.933 29.630 0.00 0.00 0.00 3.72
159 160 9.698309 GCTGTTGTTCTGTATCTATGTATACAT 57.302 33.333 21.57 21.57 40.59 2.29
160 161 8.691797 TGCTGTTGTTCTGTATCTATGTATACA 58.308 33.333 8.27 8.27 39.45 2.29
161 162 9.186323 CTGCTGTTGTTCTGTATCTATGTATAC 57.814 37.037 0.00 0.00 33.69 1.47
162 163 8.360390 CCTGCTGTTGTTCTGTATCTATGTATA 58.640 37.037 0.00 0.00 0.00 1.47
163 164 7.147655 ACCTGCTGTTGTTCTGTATCTATGTAT 60.148 37.037 0.00 0.00 0.00 2.29
164 165 6.154534 ACCTGCTGTTGTTCTGTATCTATGTA 59.845 38.462 0.00 0.00 0.00 2.29
165 166 5.046304 ACCTGCTGTTGTTCTGTATCTATGT 60.046 40.000 0.00 0.00 0.00 2.29
166 167 5.423015 ACCTGCTGTTGTTCTGTATCTATG 58.577 41.667 0.00 0.00 0.00 2.23
167 168 5.683876 ACCTGCTGTTGTTCTGTATCTAT 57.316 39.130 0.00 0.00 0.00 1.98
168 169 5.483685 AACCTGCTGTTGTTCTGTATCTA 57.516 39.130 0.00 0.00 35.31 1.98
169 170 4.357918 AACCTGCTGTTGTTCTGTATCT 57.642 40.909 0.00 0.00 35.31 1.98
188 189 9.218440 ACCAAATTGGATGTTTGATAAATCAAC 57.782 29.630 20.25 2.56 42.41 3.18
205 206 3.181491 ACGATGCCGATAAACCAAATTGG 60.181 43.478 11.02 11.02 40.60 3.16
287 305 6.170506 TGGAAGCTTACGAACATAATCTTGT 58.829 36.000 3.73 0.00 0.00 3.16
292 310 7.391148 AACAATGGAAGCTTACGAACATAAT 57.609 32.000 3.73 0.00 0.00 1.28
295 313 4.156008 GGAACAATGGAAGCTTACGAACAT 59.844 41.667 3.73 0.00 0.00 2.71
300 318 2.159707 CGTGGAACAATGGAAGCTTACG 60.160 50.000 3.73 0.24 44.16 3.18
302 320 2.432444 CCGTGGAACAATGGAAGCTTA 58.568 47.619 0.00 0.00 44.16 3.09
308 326 2.158593 TCTTTTCCCGTGGAACAATGGA 60.159 45.455 5.02 0.00 44.16 3.41
312 330 4.647399 AGAAAATCTTTTCCCGTGGAACAA 59.353 37.500 10.90 3.65 45.84 2.83
324 342 9.696917 CTTAGTTATGTGCCAAGAAAATCTTTT 57.303 29.630 0.00 0.00 33.78 2.27
336 354 2.028476 ACGCTGACTTAGTTATGTGCCA 60.028 45.455 0.00 0.00 0.00 4.92
339 357 3.612860 GGACACGCTGACTTAGTTATGTG 59.387 47.826 7.68 7.68 0.00 3.21
377 396 7.967854 CAGCAAAATCAACGTTCCTTCATTATA 59.032 33.333 0.00 0.00 0.00 0.98
383 402 3.964909 ACAGCAAAATCAACGTTCCTTC 58.035 40.909 0.00 0.00 0.00 3.46
405 424 6.953743 CGTCCTATAACAACGTTTCTTCATTG 59.046 38.462 0.00 0.00 0.00 2.82
428 450 0.743688 TTCTGTTGTTGCAATGCCGT 59.256 45.000 0.59 0.00 0.00 5.68
626 668 4.790962 ATGCAGCTGGTGGAGGCG 62.791 66.667 17.12 0.00 0.00 5.52
628 670 2.513204 CGATGCAGCTGGTGGAGG 60.513 66.667 17.12 0.00 0.00 4.30
629 671 2.513204 CCGATGCAGCTGGTGGAG 60.513 66.667 17.12 0.00 0.00 3.86
648 705 0.764752 GGACCGGGGAGATGAATCCT 60.765 60.000 6.32 0.00 39.50 3.24
650 707 0.682292 GAGGACCGGGGAGATGAATC 59.318 60.000 6.32 0.00 0.00 2.52
680 2786 1.673033 CCGGATGTGAGTGACAAGTCC 60.673 57.143 0.00 0.00 38.36 3.85
684 2790 1.676968 CCCCGGATGTGAGTGACAA 59.323 57.895 0.73 0.00 38.36 3.18
685 2791 2.954684 GCCCCGGATGTGAGTGACA 61.955 63.158 0.73 0.00 39.53 3.58
721 2827 3.851128 GAGGCAGGACCGGTAGGC 61.851 72.222 7.34 13.63 46.52 3.93
722 2828 3.155167 GGAGGCAGGACCGGTAGG 61.155 72.222 7.34 0.11 46.52 3.18
781 8024 4.222847 GACTTAGAGGCCCCGGCG 62.223 72.222 0.00 0.00 43.06 6.46
782 8025 4.222847 CGACTTAGAGGCCCCGGC 62.223 72.222 0.00 0.00 41.06 6.13
784 8027 4.222847 GGCGACTTAGAGGCCCCG 62.223 72.222 0.00 0.00 41.01 5.73
788 8031 2.583593 CAGCGGCGACTTAGAGGC 60.584 66.667 12.98 0.00 0.00 4.70
1372 8670 1.237285 CCGAAGAAGGCAACCACCAG 61.237 60.000 0.00 0.00 37.17 4.00
1434 8732 0.465278 GCCCCTTGAGGAGATTGCTC 60.465 60.000 0.00 0.00 38.24 4.26
1566 8864 5.007724 CGCTTTGTCTACTTCACCTTCTTTT 59.992 40.000 0.00 0.00 0.00 2.27
1737 9035 6.040504 TCAGGCTAGTATATGTCATGACGTTT 59.959 38.462 24.93 19.17 0.00 3.60
2151 9449 2.052782 AGCCAAATACATCCGGGTTC 57.947 50.000 0.00 0.00 0.00 3.62
2191 9489 6.127196 GCATCCATCCTACCCATTTTACAAAA 60.127 38.462 0.00 0.00 0.00 2.44
2339 9637 6.039616 CAGAGACCTCTATTAACTGCTTCAC 58.960 44.000 0.00 0.00 37.98 3.18
3440 10942 2.464157 AGGAGGAGCTGAAACGAAAG 57.536 50.000 0.00 0.00 0.00 2.62
3442 10944 2.492484 GAGTAGGAGGAGCTGAAACGAA 59.508 50.000 0.00 0.00 0.00 3.85
3443 10945 2.093106 GAGTAGGAGGAGCTGAAACGA 58.907 52.381 0.00 0.00 0.00 3.85
3445 10947 2.418060 GCAGAGTAGGAGGAGCTGAAAC 60.418 54.545 0.00 0.00 0.00 2.78
3446 10948 1.827969 GCAGAGTAGGAGGAGCTGAAA 59.172 52.381 0.00 0.00 0.00 2.69
3447 10949 1.479709 GCAGAGTAGGAGGAGCTGAA 58.520 55.000 0.00 0.00 0.00 3.02
3448 10950 0.396417 GGCAGAGTAGGAGGAGCTGA 60.396 60.000 0.00 0.00 0.00 4.26
3449 10951 0.685785 TGGCAGAGTAGGAGGAGCTG 60.686 60.000 0.00 0.00 0.00 4.24
3451 10953 0.686112 ACTGGCAGAGTAGGAGGAGC 60.686 60.000 23.66 0.00 30.86 4.70
3452 10954 1.110442 CACTGGCAGAGTAGGAGGAG 58.890 60.000 23.66 0.00 31.73 3.69
3454 10956 1.519719 GCACTGGCAGAGTAGGAGG 59.480 63.158 23.66 1.09 40.72 4.30
3457 10959 2.185350 CGGCACTGGCAGAGTAGG 59.815 66.667 23.66 6.04 43.71 3.18
3458 10960 2.510238 GCGGCACTGGCAGAGTAG 60.510 66.667 23.66 12.43 43.71 2.57
3459 10961 4.082523 GGCGGCACTGGCAGAGTA 62.083 66.667 23.66 0.00 43.71 2.59
3467 10969 2.433838 CAGTCTCTGGCGGCACTG 60.434 66.667 7.97 10.46 0.00 3.66
3468 10970 2.601666 TCAGTCTCTGGCGGCACT 60.602 61.111 7.97 0.00 31.51 4.40
3470 10972 1.670949 GATCTCAGTCTCTGGCGGCA 61.671 60.000 12.58 12.58 31.51 5.69
3471 10973 1.067250 GATCTCAGTCTCTGGCGGC 59.933 63.158 0.00 0.00 31.51 6.53
3472 10974 0.820226 TTGATCTCAGTCTCTGGCGG 59.180 55.000 0.00 0.00 31.51 6.13
3474 10976 3.446873 TCTTCTTGATCTCAGTCTCTGGC 59.553 47.826 0.00 0.00 31.51 4.85
3477 10979 4.949856 GGTCTCTTCTTGATCTCAGTCTCT 59.050 45.833 0.00 0.00 0.00 3.10
3478 10980 4.201910 CGGTCTCTTCTTGATCTCAGTCTC 60.202 50.000 0.00 0.00 0.00 3.36
3480 10982 3.733684 GCGGTCTCTTCTTGATCTCAGTC 60.734 52.174 0.00 0.00 0.00 3.51
3481 10983 2.165437 GCGGTCTCTTCTTGATCTCAGT 59.835 50.000 0.00 0.00 0.00 3.41
3482 10984 2.426738 AGCGGTCTCTTCTTGATCTCAG 59.573 50.000 0.00 0.00 0.00 3.35
3483 10985 2.165234 CAGCGGTCTCTTCTTGATCTCA 59.835 50.000 0.00 0.00 0.00 3.27
3485 10987 2.451490 TCAGCGGTCTCTTCTTGATCT 58.549 47.619 0.00 0.00 0.00 2.75
3486 10988 2.949451 TCAGCGGTCTCTTCTTGATC 57.051 50.000 0.00 0.00 0.00 2.92
3487 10989 2.762887 TCATCAGCGGTCTCTTCTTGAT 59.237 45.455 0.00 0.00 0.00 2.57
3489 10991 2.538437 CTCATCAGCGGTCTCTTCTTG 58.462 52.381 0.00 0.00 0.00 3.02
3490 10992 1.480137 CCTCATCAGCGGTCTCTTCTT 59.520 52.381 0.00 0.00 0.00 2.52
3492 10994 1.066908 CTCCTCATCAGCGGTCTCTTC 59.933 57.143 0.00 0.00 0.00 2.87
3493 10995 1.110442 CTCCTCATCAGCGGTCTCTT 58.890 55.000 0.00 0.00 0.00 2.85
3494 10996 0.754957 CCTCCTCATCAGCGGTCTCT 60.755 60.000 0.00 0.00 0.00 3.10
3495 10997 1.739049 CCTCCTCATCAGCGGTCTC 59.261 63.158 0.00 0.00 0.00 3.36
3496 10998 1.760086 CCCTCCTCATCAGCGGTCT 60.760 63.158 0.00 0.00 0.00 3.85
3497 10999 2.060980 ACCCTCCTCATCAGCGGTC 61.061 63.158 0.00 0.00 0.00 4.79
3499 11001 2.503061 CACCCTCCTCATCAGCGG 59.497 66.667 0.00 0.00 0.00 5.52
3500 11002 2.362369 ACCACCCTCCTCATCAGCG 61.362 63.158 0.00 0.00 0.00 5.18
3501 11003 1.222936 CACCACCCTCCTCATCAGC 59.777 63.158 0.00 0.00 0.00 4.26
3503 11005 0.117140 AGTCACCACCCTCCTCATCA 59.883 55.000 0.00 0.00 0.00 3.07
3504 11006 2.160721 TAGTCACCACCCTCCTCATC 57.839 55.000 0.00 0.00 0.00 2.92
3505 11007 2.774234 CAATAGTCACCACCCTCCTCAT 59.226 50.000 0.00 0.00 0.00 2.90
3506 11008 2.187958 CAATAGTCACCACCCTCCTCA 58.812 52.381 0.00 0.00 0.00 3.86
3507 11009 1.486726 CCAATAGTCACCACCCTCCTC 59.513 57.143 0.00 0.00 0.00 3.71
3509 11011 0.546598 CCCAATAGTCACCACCCTCC 59.453 60.000 0.00 0.00 0.00 4.30
3510 11012 0.107165 GCCCAATAGTCACCACCCTC 60.107 60.000 0.00 0.00 0.00 4.30
3513 11015 0.258774 ATGGCCCAATAGTCACCACC 59.741 55.000 0.00 0.00 32.13 4.61
3514 11016 1.680338 GATGGCCCAATAGTCACCAC 58.320 55.000 0.00 0.00 32.13 4.16
3515 11017 0.180171 CGATGGCCCAATAGTCACCA 59.820 55.000 0.00 0.00 34.28 4.17
3517 11019 2.325583 TTCGATGGCCCAATAGTCAC 57.674 50.000 0.00 0.00 0.00 3.67
3519 11021 1.537202 GCATTCGATGGCCCAATAGTC 59.463 52.381 0.00 0.00 0.00 2.59
3520 11022 1.133823 TGCATTCGATGGCCCAATAGT 60.134 47.619 0.00 0.00 0.00 2.12
3521 11023 1.267806 GTGCATTCGATGGCCCAATAG 59.732 52.381 0.00 0.00 0.00 1.73
3523 11025 1.394266 GGTGCATTCGATGGCCCAAT 61.394 55.000 0.00 0.00 0.00 3.16
3524 11026 2.051518 GGTGCATTCGATGGCCCAA 61.052 57.895 0.00 0.00 0.00 4.12
3525 11027 2.440065 GGTGCATTCGATGGCCCA 60.440 61.111 0.00 0.00 0.00 5.36
3528 11030 2.404789 CACGGTGCATTCGATGGC 59.595 61.111 17.19 2.14 0.00 4.40
3529 11031 0.461163 TACCACGGTGCATTCGATGG 60.461 55.000 17.19 19.23 36.04 3.51
3530 11032 0.650512 GTACCACGGTGCATTCGATG 59.349 55.000 17.19 11.59 0.00 3.84
3531 11033 0.248012 TGTACCACGGTGCATTCGAT 59.752 50.000 17.19 6.62 35.90 3.59
3532 11034 0.248012 ATGTACCACGGTGCATTCGA 59.752 50.000 13.36 0.00 46.41 3.71
3533 11035 0.373370 CATGTACCACGGTGCATTCG 59.627 55.000 16.10 10.23 46.41 3.34
3534 11036 1.448985 ACATGTACCACGGTGCATTC 58.551 50.000 16.10 0.00 46.41 2.67
3535 11037 1.904287 AACATGTACCACGGTGCATT 58.096 45.000 16.10 2.55 46.41 3.56
3537 11039 1.202710 AGAAACATGTACCACGGTGCA 60.203 47.619 9.53 9.53 44.15 4.57
3538 11040 1.196808 CAGAAACATGTACCACGGTGC 59.803 52.381 0.00 0.00 0.00 5.01
3539 11041 1.804151 CCAGAAACATGTACCACGGTG 59.196 52.381 0.00 0.00 0.00 4.94
3543 11045 3.941483 CTCATCCCAGAAACATGTACCAC 59.059 47.826 0.00 0.00 0.00 4.16
3544 11046 3.843619 TCTCATCCCAGAAACATGTACCA 59.156 43.478 0.00 0.00 0.00 3.25
3545 11047 4.487714 TCTCATCCCAGAAACATGTACC 57.512 45.455 0.00 0.00 0.00 3.34
3546 11048 5.529060 GGATTCTCATCCCAGAAACATGTAC 59.471 44.000 0.00 0.00 43.29 2.90
3547 11049 5.684704 GGATTCTCATCCCAGAAACATGTA 58.315 41.667 0.00 0.00 43.29 2.29
3548 11050 4.530875 GGATTCTCATCCCAGAAACATGT 58.469 43.478 0.00 0.00 43.29 3.21
3568 11643 0.180642 TTGTTGTACTGCCGTTGGGA 59.819 50.000 0.00 0.00 34.06 4.37
3570 11645 1.673920 AGTTTGTTGTACTGCCGTTGG 59.326 47.619 0.00 0.00 0.00 3.77
3571 11646 2.353269 TCAGTTTGTTGTACTGCCGTTG 59.647 45.455 0.00 0.00 42.12 4.10
3572 11647 2.634600 TCAGTTTGTTGTACTGCCGTT 58.365 42.857 0.00 0.00 42.12 4.44
3574 11649 2.159627 GGATCAGTTTGTTGTACTGCCG 59.840 50.000 0.00 0.00 42.12 5.69
3576 11651 4.515191 TGAAGGATCAGTTTGTTGTACTGC 59.485 41.667 0.00 0.00 42.12 4.40
3577 11652 5.333339 CGTGAAGGATCAGTTTGTTGTACTG 60.333 44.000 0.00 0.00 43.41 2.74
3579 11654 4.610680 GCGTGAAGGATCAGTTTGTTGTAC 60.611 45.833 0.00 0.00 35.88 2.90
3581 11656 2.290641 GCGTGAAGGATCAGTTTGTTGT 59.709 45.455 0.00 0.00 35.88 3.32
3583 11658 2.808543 GAGCGTGAAGGATCAGTTTGTT 59.191 45.455 0.00 0.00 35.88 2.83
3585 11660 2.693069 AGAGCGTGAAGGATCAGTTTG 58.307 47.619 0.00 0.00 35.88 2.93
3586 11661 4.744795 ATAGAGCGTGAAGGATCAGTTT 57.255 40.909 0.00 0.00 35.88 2.66
3592 11667 3.741249 TCGACTATAGAGCGTGAAGGAT 58.259 45.455 6.78 0.00 0.00 3.24
3594 11669 3.498777 TCATCGACTATAGAGCGTGAAGG 59.501 47.826 6.78 0.00 0.00 3.46
3595 11670 4.733972 TCATCGACTATAGAGCGTGAAG 57.266 45.455 6.78 3.00 0.00 3.02
3596 11671 5.690997 ATTCATCGACTATAGAGCGTGAA 57.309 39.130 22.22 22.22 33.25 3.18
3598 11673 5.452777 TCAATTCATCGACTATAGAGCGTG 58.547 41.667 6.78 10.19 0.00 5.34
3599 11674 5.690997 TCAATTCATCGACTATAGAGCGT 57.309 39.130 6.78 0.00 0.00 5.07
3600 11675 5.004251 GCATCAATTCATCGACTATAGAGCG 59.996 44.000 6.78 9.83 0.00 5.03
3601 11676 5.866092 TGCATCAATTCATCGACTATAGAGC 59.134 40.000 6.78 0.00 0.00 4.09
3602 11677 6.865205 TGTGCATCAATTCATCGACTATAGAG 59.135 38.462 6.78 0.09 0.00 2.43
3603 11678 6.642540 GTGTGCATCAATTCATCGACTATAGA 59.357 38.462 6.78 0.00 0.00 1.98
3604 11679 6.421801 TGTGTGCATCAATTCATCGACTATAG 59.578 38.462 0.00 0.00 0.00 1.31
3607 11682 4.502962 TGTGTGCATCAATTCATCGACTA 58.497 39.130 0.00 0.00 0.00 2.59
3609 11684 3.745332 TGTGTGCATCAATTCATCGAC 57.255 42.857 0.00 0.00 0.00 4.20
3611 11686 5.453266 GTGTAATGTGTGCATCAATTCATCG 59.547 40.000 0.00 0.00 33.50 3.84
3614 11689 4.215185 ACGTGTAATGTGTGCATCAATTCA 59.785 37.500 0.00 0.00 32.58 2.57
3866 16685 2.491298 TGAGAGCACAGCTAGACTTCTG 59.509 50.000 0.00 0.00 39.88 3.02
3995 18629 3.021695 CTCCTGATTGTACACTACGGGA 58.978 50.000 17.28 17.28 35.20 5.14
4023 20101 2.798364 TTGACTCGGCCGGTCAACA 61.798 57.895 36.90 26.12 45.14 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.