Multiple sequence alignment - TraesCS2D01G531500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G531500 chr2D 100.000 9459 0 0 1 9459 617387253 617396711 0.000000e+00 17468.0
1 TraesCS2D01G531500 chr2D 79.513 986 157 30 1042 2004 617151219 617150256 0.000000e+00 660.0
2 TraesCS2D01G531500 chr2B 93.152 3271 131 40 6213 9459 753094413 753097614 0.000000e+00 4713.0
3 TraesCS2D01G531500 chr2B 94.697 2376 98 13 3855 6222 753092033 753094388 0.000000e+00 3664.0
4 TraesCS2D01G531500 chr2B 94.253 2123 102 13 827 2938 753088840 753090953 0.000000e+00 3227.0
5 TraesCS2D01G531500 chr2B 92.790 319 21 2 2956 3273 753090938 753091255 2.410000e-125 460.0
6 TraesCS2D01G531500 chr2B 91.525 295 25 0 3142 3436 753091163 753091457 3.180000e-109 407.0
7 TraesCS2D01G531500 chr2B 81.992 261 31 6 3574 3819 753091770 753092029 3.460000e-49 207.0
8 TraesCS2D01G531500 chr2B 84.103 195 15 2 3396 3574 753091456 753091650 3.510000e-39 174.0
9 TraesCS2D01G531500 chr2B 92.727 55 4 0 697 751 132574587 132574533 7.870000e-11 80.5
10 TraesCS2D01G531500 chr2B 92.727 55 4 0 697 751 132576673 132576619 7.870000e-11 80.5
11 TraesCS2D01G531500 chr2A 94.337 2419 94 16 3817 6222 747610563 747612951 0.000000e+00 3668.0
12 TraesCS2D01G531500 chr2A 92.149 2573 135 27 887 3436 747607260 747609788 0.000000e+00 3570.0
13 TraesCS2D01G531500 chr2A 92.246 1986 102 23 7468 9420 747614205 747616171 0.000000e+00 2767.0
14 TraesCS2D01G531500 chr2A 95.543 1234 42 7 6213 7438 747612976 747614204 0.000000e+00 1962.0
15 TraesCS2D01G531500 chr2A 79.559 998 165 26 1030 2004 747309888 747310869 0.000000e+00 676.0
16 TraesCS2D01G531500 chr2A 84.746 708 38 20 4 661 747605262 747605949 0.000000e+00 645.0
17 TraesCS2D01G531500 chr2A 88.690 168 17 2 3632 3798 747610232 747610398 4.480000e-48 204.0
18 TraesCS2D01G531500 chr2A 85.567 194 12 2 3396 3573 747609787 747609980 1.250000e-43 189.0
19 TraesCS2D01G531500 chr2A 91.667 108 9 0 787 894 747606360 747606467 5.920000e-32 150.0
20 TraesCS2D01G531500 chr2A 96.364 55 2 0 3574 3628 747610112 747610166 3.640000e-14 91.6
21 TraesCS2D01G531500 chr2A 83.178 107 9 5 136 242 747605623 747605720 1.310000e-13 89.8
22 TraesCS2D01G531500 chr3B 92.846 629 43 1 7673 8301 152225662 152226288 0.000000e+00 911.0
23 TraesCS2D01G531500 chr3B 84.028 983 119 18 8451 9411 152226608 152227574 0.000000e+00 911.0
24 TraesCS2D01G531500 chr3B 80.123 488 67 18 6517 6997 616086671 616087135 4.230000e-88 337.0
25 TraesCS2D01G531500 chr3B 93.056 144 7 3 8299 8440 152226374 152226516 3.460000e-49 207.0
26 TraesCS2D01G531500 chr3B 83.333 138 16 4 7147 7281 616087297 616087430 4.640000e-23 121.0
27 TraesCS2D01G531500 chr3B 85.294 68 10 0 248 315 554541252 554541319 4.740000e-08 71.3
28 TraesCS2D01G531500 chr4B 90.302 629 59 1 7673 8301 157288870 157289496 0.000000e+00 822.0
29 TraesCS2D01G531500 chr4B 82.562 843 106 19 8299 9109 157289582 157290415 0.000000e+00 704.0
30 TraesCS2D01G531500 chr1B 89.209 417 24 5 3634 4044 577179469 577179068 1.420000e-137 501.0
31 TraesCS2D01G531500 chr1B 77.911 584 106 9 6706 7277 591394467 591393895 9.100000e-90 342.0
32 TraesCS2D01G531500 chr7A 78.020 596 89 27 6433 7015 126087304 126087870 4.230000e-88 337.0
33 TraesCS2D01G531500 chr7A 80.992 121 14 8 582 693 460585929 460586049 4.710000e-13 87.9
34 TraesCS2D01G531500 chr1D 82.326 215 18 9 6781 6994 463164707 463164512 1.630000e-37 169.0
35 TraesCS2D01G531500 chr1A 82.110 218 18 10 6781 6996 555076039 555075841 5.880000e-37 167.0
36 TraesCS2D01G531500 chrUn 91.379 58 5 0 694 751 318561767 318561824 7.870000e-11 80.5
37 TraesCS2D01G531500 chr4D 84.211 76 9 3 697 771 484411305 484411378 4.740000e-08 71.3
38 TraesCS2D01G531500 chr4A 82.716 81 13 1 47 126 46407391 46407311 4.740000e-08 71.3
39 TraesCS2D01G531500 chr5A 81.111 90 9 6 611 692 536370011 536370100 2.200000e-06 65.8
40 TraesCS2D01G531500 chr5A 100.000 29 0 0 87 115 505492714 505492742 5.000000e-03 54.7
41 TraesCS2D01G531500 chr6D 80.899 89 8 8 616 695 389650275 389650187 2.850000e-05 62.1
42 TraesCS2D01G531500 chr3D 80.000 90 8 5 564 643 31869718 31869807 3.690000e-04 58.4
43 TraesCS2D01G531500 chr7B 100.000 28 0 0 87 114 150065762 150065735 1.700000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G531500 chr2D 617387253 617396711 9458 False 17468.000000 17468 100.000000 1 9459 1 chr2D.!!$F1 9458
1 TraesCS2D01G531500 chr2D 617150256 617151219 963 True 660.000000 660 79.513000 1042 2004 1 chr2D.!!$R1 962
2 TraesCS2D01G531500 chr2B 753088840 753097614 8774 False 1836.000000 4713 90.358857 827 9459 7 chr2B.!!$F1 8632
3 TraesCS2D01G531500 chr2A 747605262 747616171 10909 False 1333.640000 3668 90.448700 4 9420 10 chr2A.!!$F2 9416
4 TraesCS2D01G531500 chr2A 747309888 747310869 981 False 676.000000 676 79.559000 1030 2004 1 chr2A.!!$F1 974
5 TraesCS2D01G531500 chr3B 152225662 152227574 1912 False 676.333333 911 89.976667 7673 9411 3 chr3B.!!$F2 1738
6 TraesCS2D01G531500 chr3B 616086671 616087430 759 False 229.000000 337 81.728000 6517 7281 2 chr3B.!!$F3 764
7 TraesCS2D01G531500 chr4B 157288870 157290415 1545 False 763.000000 822 86.432000 7673 9109 2 chr4B.!!$F1 1436
8 TraesCS2D01G531500 chr1B 591393895 591394467 572 True 342.000000 342 77.911000 6706 7277 1 chr1B.!!$R2 571
9 TraesCS2D01G531500 chr7A 126087304 126087870 566 False 337.000000 337 78.020000 6433 7015 1 chr7A.!!$F1 582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
468 493 0.105408 ACCAGACGGTTACAAACGCT 59.895 50.000 0.0 0.0 46.31 5.07 F
934 2095 0.373024 CTTCCGTACCGACTCGACTC 59.627 60.000 0.0 0.0 0.00 3.36 F
2397 3608 0.107081 TGTGGTCGTTTTCCCATCGT 59.893 50.000 0.0 0.0 32.32 3.73 F
3146 4366 0.039346 GCTACCCGAATCCGAGCTAC 60.039 60.000 0.0 0.0 38.22 3.58 F
3841 5567 0.102300 CATAGGCATCACACGACCGA 59.898 55.000 0.0 0.0 0.00 4.69 F
3842 5568 0.102481 ATAGGCATCACACGACCGAC 59.898 55.000 0.0 0.0 0.00 4.79 F
3845 5571 0.525668 GGCATCACACGACCGACTAG 60.526 60.000 0.0 0.0 0.00 2.57 F
3847 5573 0.525668 CATCACACGACCGACTAGCC 60.526 60.000 0.0 0.0 0.00 3.93 F
3848 5574 0.680280 ATCACACGACCGACTAGCCT 60.680 55.000 0.0 0.0 0.00 4.58 F
4086 5820 0.755686 ATCATCTCCTCTTGACGGCC 59.244 55.000 0.0 0.0 0.00 6.13 F
4114 5848 1.021202 CCTCGTGACCTGCAAAACAA 58.979 50.000 0.0 0.0 0.00 2.83 F
4117 5851 1.400142 TCGTGACCTGCAAAACAACAG 59.600 47.619 0.0 0.0 0.00 3.16 F
5430 7173 1.556911 ACTTCTCAGGAATCATGCGGT 59.443 47.619 0.0 0.0 0.00 5.68 F
7108 8952 1.208259 GCTTTGGTTTTGCTTCACCG 58.792 50.000 0.0 0.0 35.60 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2076 3285 0.037975 CAATCCTGGCACCTGCAAAC 60.038 55.000 0.00 0.00 44.36 2.93 R
2763 3980 0.246912 GCAAGCGTTTCATCTCGTCG 60.247 55.000 0.00 0.00 0.00 5.12 R
3822 5548 0.102300 TCGGTCGTGTGATGCCTATG 59.898 55.000 0.00 0.00 0.00 2.23 R
4158 5892 0.914551 CTCGTAATTGTCGCGTGAGG 59.085 55.000 5.77 0.00 0.00 3.86 R
4951 6690 1.002087 AGGGAGTTGCTTCTTGGTACG 59.998 52.381 0.00 0.00 0.00 3.67 R
5291 7034 1.524621 GGCGAGTGCATGCAGGTAT 60.525 57.895 23.41 7.55 45.35 2.73 R
5749 7493 1.666872 GGCTATTCGGCCGCGTTAT 60.667 57.895 23.51 13.29 42.82 1.89 R
5900 7644 6.801539 TCAAATGCTCACTGTTAGTTTAGG 57.198 37.500 0.00 0.00 0.00 2.69 R
5935 7679 8.276325 GGAAAACAATCTACTAAGCATCATACG 58.724 37.037 0.00 0.00 0.00 3.06 R
6045 7789 9.146984 TCTTGAAACTACACCTATTACATTTCG 57.853 33.333 0.00 0.00 0.00 3.46 R
6574 8356 4.423625 AAAGAGTAGTCAACCAACAGCT 57.576 40.909 0.00 0.00 0.00 4.24 R
6636 8418 6.040504 GTCTGGTGAAACTCCCTTGTTAAATT 59.959 38.462 0.00 0.00 36.74 1.82 R
7775 9625 1.202268 GCTGTCAGATGCCAAATCTGC 60.202 52.381 3.32 6.63 43.79 4.26 R
9002 11083 0.720027 CAGCAGAGCAATGTGAGTCG 59.280 55.000 0.00 0.00 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.106029 CGGAGATTTTCTAAGTCCGTGA 57.894 45.455 0.89 0.00 44.18 4.35
24 25 4.491676 CGGAGATTTTCTAAGTCCGTGAA 58.508 43.478 0.89 0.00 44.18 3.18
25 26 4.326548 CGGAGATTTTCTAAGTCCGTGAAC 59.673 45.833 0.89 0.00 44.18 3.18
236 237 2.171209 CTGTCATGCAGGACCGGTGA 62.171 60.000 27.10 8.58 41.42 4.02
242 243 2.347490 CAGGACCGGTGACCCAAG 59.653 66.667 14.63 0.00 0.00 3.61
246 247 3.168528 ACCGGTGACCCAAGCAGT 61.169 61.111 6.12 0.00 0.00 4.40
247 248 2.669569 CCGGTGACCCAAGCAGTG 60.670 66.667 0.00 0.00 0.00 3.66
248 249 2.111043 CGGTGACCCAAGCAGTGT 59.889 61.111 0.00 0.00 0.00 3.55
250 251 1.600916 GGTGACCCAAGCAGTGTCC 60.601 63.158 0.00 0.00 0.00 4.02
251 252 1.148273 GTGACCCAAGCAGTGTCCA 59.852 57.895 0.00 0.00 0.00 4.02
252 253 1.148273 TGACCCAAGCAGTGTCCAC 59.852 57.895 0.00 0.00 0.00 4.02
253 254 1.344953 TGACCCAAGCAGTGTCCACT 61.345 55.000 0.00 0.00 43.61 4.00
261 275 1.490490 AGCAGTGTCCACTTTGAAGGA 59.510 47.619 0.00 0.00 40.20 3.36
266 280 5.102313 CAGTGTCCACTTTGAAGGAAAAAC 58.898 41.667 0.00 0.00 40.20 2.43
278 292 9.973246 CTTTGAAGGAAAAACTTTAAAGCTTTC 57.027 29.630 23.11 23.11 42.86 2.62
289 303 4.650972 TTAAAGCTTTCTTGGGCCTCTA 57.349 40.909 16.57 0.00 31.78 2.43
435 451 6.000840 TGTTGGTTCTGATACTGTTATGCAA 58.999 36.000 0.00 0.00 0.00 4.08
439 455 5.874810 GGTTCTGATACTGTTATGCAAGACA 59.125 40.000 0.00 0.00 0.00 3.41
440 456 6.371548 GGTTCTGATACTGTTATGCAAGACAA 59.628 38.462 6.91 0.00 0.00 3.18
441 457 7.094805 GGTTCTGATACTGTTATGCAAGACAAA 60.095 37.037 6.91 0.13 0.00 2.83
443 459 7.977904 TCTGATACTGTTATGCAAGACAAATG 58.022 34.615 6.91 0.00 0.00 2.32
444 460 7.823799 TCTGATACTGTTATGCAAGACAAATGA 59.176 33.333 6.91 0.00 0.00 2.57
445 461 7.751732 TGATACTGTTATGCAAGACAAATGAC 58.248 34.615 6.91 0.00 0.00 3.06
447 463 4.218417 ACTGTTATGCAAGACAAATGACCC 59.782 41.667 6.91 0.00 0.00 4.46
448 464 3.190327 TGTTATGCAAGACAAATGACCCG 59.810 43.478 3.30 0.00 0.00 5.28
467 492 2.608640 ACCAGACGGTTACAAACGC 58.391 52.632 0.00 0.00 46.31 4.84
468 493 0.105408 ACCAGACGGTTACAAACGCT 59.895 50.000 0.00 0.00 46.31 5.07
524 549 5.221561 GGGTTAAATCTCTTCTAGCCTCTCC 60.222 48.000 0.00 0.00 0.00 3.71
572 621 6.920569 TTTTCGAAATACTAATGCTCCCTC 57.079 37.500 12.12 0.00 0.00 4.30
591 640 0.442310 CCGTTCCACAATGTACTGCG 59.558 55.000 0.00 0.00 0.00 5.18
597 646 5.233476 CGTTCCACAATGTACTGCGTATAAT 59.767 40.000 0.00 0.00 0.00 1.28
685 1034 5.666969 ATGAAACGACGTCTTTTGATGAA 57.333 34.783 22.91 5.58 38.75 2.57
686 1035 5.666969 TGAAACGACGTCTTTTGATGAAT 57.333 34.783 22.91 0.00 38.75 2.57
695 1044 8.000991 CGACGTCTTTTGATGAATCTAATGATC 58.999 37.037 14.70 0.00 38.75 2.92
719 1081 7.556844 TCCTAGATGTAAATGTCTTTCTCCAC 58.443 38.462 0.00 0.00 0.00 4.02
723 1085 7.875971 AGATGTAAATGTCTTTCTCCACAAAC 58.124 34.615 0.00 0.00 0.00 2.93
763 1125 9.640963 TTGAGTTTTGACTTTTCCGAAAATTTA 57.359 25.926 6.75 0.00 0.00 1.40
774 1136 8.522178 TTTTCCGAAAATTTATACGCACATTT 57.478 26.923 2.01 0.00 0.00 2.32
894 1256 2.560981 CCAGCACGTTCCCCTTTTTAAT 59.439 45.455 0.00 0.00 0.00 1.40
895 1257 3.366985 CCAGCACGTTCCCCTTTTTAATC 60.367 47.826 0.00 0.00 0.00 1.75
896 1258 2.823747 AGCACGTTCCCCTTTTTAATCC 59.176 45.455 0.00 0.00 0.00 3.01
897 1259 2.823747 GCACGTTCCCCTTTTTAATCCT 59.176 45.455 0.00 0.00 0.00 3.24
899 1261 3.824443 CACGTTCCCCTTTTTAATCCTGT 59.176 43.478 0.00 0.00 0.00 4.00
902 1264 2.718563 TCCCCTTTTTAATCCTGTCGC 58.281 47.619 0.00 0.00 0.00 5.19
903 1265 1.749063 CCCCTTTTTAATCCTGTCGCC 59.251 52.381 0.00 0.00 0.00 5.54
904 1266 2.620627 CCCCTTTTTAATCCTGTCGCCT 60.621 50.000 0.00 0.00 0.00 5.52
933 2094 1.023513 CCTTCCGTACCGACTCGACT 61.024 60.000 0.00 0.00 0.00 4.18
934 2095 0.373024 CTTCCGTACCGACTCGACTC 59.627 60.000 0.00 0.00 0.00 3.36
935 2096 1.021390 TTCCGTACCGACTCGACTCC 61.021 60.000 0.00 0.00 0.00 3.85
936 2097 2.699809 CGTACCGACTCGACTCCG 59.300 66.667 0.00 0.00 37.07 4.63
937 2098 2.097038 CGTACCGACTCGACTCCGT 61.097 63.158 0.00 0.00 37.05 4.69
1133 2309 2.209064 GACTGCGACCTCGGTAAGCA 62.209 60.000 15.00 15.00 38.72 3.91
1135 2311 2.260434 GCGACCTCGGTAAGCACA 59.740 61.111 10.07 0.00 40.23 4.57
1137 2313 1.287815 CGACCTCGGTAAGCACACA 59.712 57.895 0.00 0.00 35.37 3.72
1145 2321 1.503818 GGTAAGCACACACACACCCG 61.504 60.000 0.00 0.00 0.00 5.28
1149 2325 3.935872 CACACACACACCCGCACG 61.936 66.667 0.00 0.00 0.00 5.34
1192 2368 2.664851 TGCAAACCCTCGCTCACG 60.665 61.111 0.00 0.00 42.01 4.35
1195 2379 4.699522 AAACCCTCGCTCACGCCC 62.700 66.667 0.00 0.00 39.84 6.13
1305 2495 3.391382 GCCTACTGCTGGTCGGGT 61.391 66.667 0.00 0.00 36.87 5.28
1654 2844 0.865769 CGGCGTTGCTCACTACTTTT 59.134 50.000 0.00 0.00 0.00 2.27
1668 2864 1.333177 ACTTTTATGCCGGCCACAAA 58.667 45.000 26.77 17.90 0.00 2.83
1695 2891 1.677217 GGTCTGGTTGATGCTCCTGTC 60.677 57.143 0.00 0.00 0.00 3.51
1790 2986 2.771762 GGAGGATGGGCTGGAGCT 60.772 66.667 0.00 0.00 41.70 4.09
1845 3047 1.226379 CGATGGCAATGCGGTGTTC 60.226 57.895 0.00 0.00 0.00 3.18
1858 3060 1.652563 GTGTTCGGGCCTGTGTTTC 59.347 57.895 12.43 0.00 0.00 2.78
1860 3062 2.281208 TTCGGGCCTGTGTTTCCG 60.281 61.111 12.43 0.00 43.42 4.30
1940 3146 1.059584 TGGGCAGAGAAGTGGGTCAA 61.060 55.000 0.00 0.00 0.00 3.18
1962 3168 1.804748 GAACATCCGGAGAAACGCTTT 59.195 47.619 11.34 0.00 0.00 3.51
2010 3216 2.156098 GACCAAATGAAGGTAACCGCA 58.844 47.619 0.00 0.00 40.09 5.69
2011 3217 2.554893 GACCAAATGAAGGTAACCGCAA 59.445 45.455 0.00 0.00 40.09 4.85
2013 3219 2.352323 CCAAATGAAGGTAACCGCAACC 60.352 50.000 0.00 0.00 37.27 3.77
2014 3220 1.541379 AATGAAGGTAACCGCAACCC 58.459 50.000 0.00 0.00 37.77 4.11
2016 3222 2.032987 AAGGTAACCGCAACCCCG 59.967 61.111 0.00 0.00 37.77 5.73
2035 3244 1.993369 GCCGCCCATCTTACAAGCAC 61.993 60.000 0.00 0.00 0.00 4.40
2076 3285 3.708890 TGCTTTTCATCTTGTTGTGCTG 58.291 40.909 0.00 0.00 0.00 4.41
2098 3307 2.413142 GCAGGTGCCAGGATTGCTC 61.413 63.158 0.00 0.00 34.31 4.26
2184 3393 3.123620 GCTGGACAGAGCCGCAAG 61.124 66.667 3.00 0.00 32.35 4.01
2236 3445 2.127003 GTGTACAAAAGCGCCCGC 60.127 61.111 2.29 4.20 42.33 6.13
2284 3493 3.885297 ACTACTATAAAGTAAGCCGCCGA 59.115 43.478 0.00 0.00 37.75 5.54
2367 3578 7.327975 TGTTGGATGGCTTATATCTTATACGG 58.672 38.462 0.00 0.00 0.00 4.02
2370 3581 7.553334 TGGATGGCTTATATCTTATACGGAAC 58.447 38.462 0.00 0.00 0.00 3.62
2397 3608 0.107081 TGTGGTCGTTTTCCCATCGT 59.893 50.000 0.00 0.00 32.32 3.73
2401 3612 1.196127 GGTCGTTTTCCCATCGTCAAC 59.804 52.381 0.00 0.00 0.00 3.18
2471 3682 1.801178 GTACCAGCTGAAGCAGTTGAC 59.199 52.381 17.39 0.00 43.65 3.18
2507 3718 7.881751 GGTAACTATCTAGACAAACTTTTGGGT 59.118 37.037 6.65 0.00 42.34 4.51
2508 3719 7.745620 AACTATCTAGACAAACTTTTGGGTG 57.254 36.000 6.65 0.00 42.34 4.61
2603 3820 2.158623 TGTCTTGCCACTGTCAAAGGAT 60.159 45.455 0.00 0.00 0.00 3.24
2680 3897 0.527565 GCATCGTTTGGCCACTTCAT 59.472 50.000 3.88 0.00 0.00 2.57
2690 3907 4.799564 TGGCCACTTCATGTTTTTATCC 57.200 40.909 0.00 0.00 0.00 2.59
2692 3909 4.590647 TGGCCACTTCATGTTTTTATCCAA 59.409 37.500 0.00 0.00 0.00 3.53
2763 3980 1.344114 GATGATGCCCAGAGAGACCTC 59.656 57.143 0.00 0.00 39.72 3.85
2778 3995 0.456312 ACCTCGACGAGATGAAACGC 60.456 55.000 26.11 0.00 0.00 4.84
2779 3996 0.179161 CCTCGACGAGATGAAACGCT 60.179 55.000 26.11 0.00 0.00 5.07
2882 4099 1.133823 TGCCCATGCGTCTTTCCATAT 60.134 47.619 0.00 0.00 41.78 1.78
2884 4101 3.146066 GCCCATGCGTCTTTCCATATAA 58.854 45.455 0.00 0.00 0.00 0.98
2885 4102 3.058224 GCCCATGCGTCTTTCCATATAAC 60.058 47.826 0.00 0.00 0.00 1.89
2898 4117 8.358148 TCTTTCCATATAACGATCCTAAGTGAC 58.642 37.037 0.00 0.00 0.00 3.67
2933 4153 5.411053 CCCTGACTTCTCTGAGATTGTTTTC 59.589 44.000 8.42 0.45 0.00 2.29
2939 4159 5.310409 TCTCTGAGATTGTTTTCCAGGTT 57.690 39.130 2.58 0.00 0.00 3.50
2959 4179 1.261480 AGCTCAGCATATACCGGGAG 58.739 55.000 6.32 0.41 0.00 4.30
2968 4188 2.973694 TATACCGGGAGTGTTTCTGC 57.026 50.000 6.32 0.00 0.00 4.26
2991 4211 0.611062 AGGACCATCTCCGTCGTCAA 60.611 55.000 0.00 0.00 45.10 3.18
3029 4249 5.023533 TGAACTACTCATATGGACAAGGC 57.976 43.478 2.13 0.00 0.00 4.35
3072 4292 0.321671 TGGCTACTCAAGTGCTCCAC 59.678 55.000 0.00 0.00 34.10 4.02
3146 4366 0.039346 GCTACCCGAATCCGAGCTAC 60.039 60.000 0.00 0.00 38.22 3.58
3264 4523 0.822164 TCAAGCCTACGGAAGCTACC 59.178 55.000 0.00 0.00 38.74 3.18
3295 4554 2.037641 CGCTTCCTGGATATGGATCACA 59.962 50.000 0.00 0.00 33.27 3.58
3379 4638 0.409876 TACCAGACTCCTGAGCCAGT 59.590 55.000 0.00 0.00 43.02 4.00
3414 4673 1.344953 ATCCGGCTATGGACCTGCAA 61.345 55.000 0.00 0.00 41.85 4.08
3416 4675 1.221840 CGGCTATGGACCTGCAACT 59.778 57.895 0.00 0.00 0.00 3.16
3480 4831 1.871418 TGAGGAGCTCTGGCAGTTAT 58.129 50.000 15.27 0.83 41.70 1.89
3486 4837 0.253044 GCTCTGGCAGTTATGGACCA 59.747 55.000 15.27 0.00 38.54 4.02
3545 4896 3.131755 GCCCGAGGCTCTTACTTTAGTTA 59.868 47.826 13.50 0.00 46.69 2.24
3581 5065 0.811281 CCAAGTTGATTCCGCCTTCC 59.189 55.000 3.87 0.00 0.00 3.46
3614 5098 2.628178 TCCTCCCTACTACATGAATGCG 59.372 50.000 0.00 0.00 0.00 4.73
3730 5277 1.340405 TGAGAAGATGGCCTTTCCTGC 60.340 52.381 3.32 0.00 34.68 4.85
3747 5294 5.252969 TCCTGCATTATCAGCATTGTTTC 57.747 39.130 0.00 0.00 41.82 2.78
3823 5549 3.942351 CAGACTTCTGTGGATGCCA 57.058 52.632 0.00 0.00 39.09 4.92
3824 5550 2.414994 CAGACTTCTGTGGATGCCAT 57.585 50.000 0.00 0.00 39.09 4.40
3825 5551 3.548745 CAGACTTCTGTGGATGCCATA 57.451 47.619 0.00 0.00 39.09 2.74
3826 5552 3.464907 CAGACTTCTGTGGATGCCATAG 58.535 50.000 4.06 4.06 42.88 2.23
3827 5553 2.437281 AGACTTCTGTGGATGCCATAGG 59.563 50.000 9.83 0.00 42.00 2.57
3839 5565 2.992089 CCATAGGCATCACACGACC 58.008 57.895 0.00 0.00 0.00 4.79
3840 5566 0.875908 CCATAGGCATCACACGACCG 60.876 60.000 0.00 0.00 0.00 4.79
3841 5567 0.102300 CATAGGCATCACACGACCGA 59.898 55.000 0.00 0.00 0.00 4.69
3842 5568 0.102481 ATAGGCATCACACGACCGAC 59.898 55.000 0.00 0.00 0.00 4.79
3843 5569 0.963856 TAGGCATCACACGACCGACT 60.964 55.000 0.00 0.00 0.00 4.18
3844 5570 0.963856 AGGCATCACACGACCGACTA 60.964 55.000 0.00 0.00 0.00 2.59
3845 5571 0.525668 GGCATCACACGACCGACTAG 60.526 60.000 0.00 0.00 0.00 2.57
3846 5572 1.140407 GCATCACACGACCGACTAGC 61.140 60.000 0.00 0.00 0.00 3.42
3847 5573 0.525668 CATCACACGACCGACTAGCC 60.526 60.000 0.00 0.00 0.00 3.93
3848 5574 0.680280 ATCACACGACCGACTAGCCT 60.680 55.000 0.00 0.00 0.00 4.58
3849 5575 1.154016 CACACGACCGACTAGCCTG 60.154 63.158 0.00 0.00 0.00 4.85
3850 5576 2.341101 ACACGACCGACTAGCCTGG 61.341 63.158 0.00 0.00 0.00 4.45
3851 5577 2.044555 CACGACCGACTAGCCTGGA 61.045 63.158 0.00 0.00 0.00 3.86
3852 5578 1.303888 ACGACCGACTAGCCTGGAA 60.304 57.895 0.00 0.00 0.00 3.53
3853 5579 1.139095 CGACCGACTAGCCTGGAAC 59.861 63.158 0.00 0.00 0.00 3.62
3864 5590 5.208890 ACTAGCCTGGAACACTATATGTCA 58.791 41.667 0.00 0.00 42.31 3.58
4029 5763 4.508124 GGAACACATCAGCTATTCTAACCG 59.492 45.833 0.00 0.00 0.00 4.44
4086 5820 0.755686 ATCATCTCCTCTTGACGGCC 59.244 55.000 0.00 0.00 0.00 6.13
4114 5848 1.021202 CCTCGTGACCTGCAAAACAA 58.979 50.000 0.00 0.00 0.00 2.83
4117 5851 1.400142 TCGTGACCTGCAAAACAACAG 59.600 47.619 0.00 0.00 0.00 3.16
4158 5892 6.749578 TCATGTAACACAACACAAACAACATC 59.250 34.615 0.00 0.00 30.75 3.06
4430 6166 4.196193 TCATGAAGTCGTTTGTCAAAGGT 58.804 39.130 15.60 0.00 0.00 3.50
4591 6327 2.169832 TAGCAGCACTTGACCTGAAC 57.830 50.000 0.00 0.00 0.00 3.18
4654 6390 8.332464 CACAAGTTCTACGACATTCAAAAACTA 58.668 33.333 0.00 0.00 0.00 2.24
4655 6391 8.885722 ACAAGTTCTACGACATTCAAAAACTAA 58.114 29.630 0.00 0.00 0.00 2.24
4712 6448 2.619849 CCTTTGTCCATGAGCTCCACAT 60.620 50.000 12.15 0.00 0.00 3.21
4713 6449 2.118313 TTGTCCATGAGCTCCACATG 57.882 50.000 12.15 9.06 42.99 3.21
4731 6467 5.278610 CCACATGCATGGTGTTAATCCATAG 60.279 44.000 29.41 0.00 42.92 2.23
4746 6482 9.847224 GTTAATCCATAGATTTCTCCAAGGTAA 57.153 33.333 0.00 0.00 39.83 2.85
4776 6515 7.881775 AGTTCACACCAGACTAGAAATTTTT 57.118 32.000 0.00 0.00 0.00 1.94
4941 6680 6.375377 GTCTAGTAAATCCAGCTGTAGATCG 58.625 44.000 13.81 0.00 0.00 3.69
5033 6772 5.300539 TCAGCTGCTACAGATTTACCTCTAG 59.699 44.000 9.47 0.00 32.44 2.43
5037 6776 6.487331 GCTGCTACAGATTTACCTCTAGTAGA 59.513 42.308 0.00 0.00 33.46 2.59
5137 6876 3.384467 GCAGATGGCAAGGGCTTAAATAA 59.616 43.478 0.00 0.00 43.97 1.40
5218 6957 5.191124 AGGGATATTTCCTTTACACGTTCCT 59.809 40.000 1.99 0.00 42.20 3.36
5219 6958 6.384886 AGGGATATTTCCTTTACACGTTCCTA 59.615 38.462 1.99 0.00 42.20 2.94
5220 6959 6.704937 GGGATATTTCCTTTACACGTTCCTAG 59.295 42.308 1.99 0.00 42.20 3.02
5227 6966 5.879223 TCCTTTACACGTTCCTAGTAGAGAG 59.121 44.000 0.00 0.00 0.00 3.20
5291 7034 8.102676 GTCCCAAAACTATAGTACAAGGGTTTA 58.897 37.037 22.14 9.08 35.31 2.01
5420 7163 5.361285 GGAGCTTAGACATAACTTCTCAGGA 59.639 44.000 0.00 0.00 0.00 3.86
5430 7173 1.556911 ACTTCTCAGGAATCATGCGGT 59.443 47.619 0.00 0.00 0.00 5.68
5447 7190 2.288886 GCGGTCAAGTTGAGGACTAACT 60.289 50.000 5.62 0.00 37.72 2.24
5481 7224 5.909621 AGACTACAGAACGGTAGCAAATA 57.090 39.130 10.89 0.00 43.61 1.40
5749 7493 8.621532 ATCAACTTTCAGCTCATGTAAAGTTA 57.378 30.769 16.95 10.90 41.75 2.24
5935 7679 4.443063 GTGAGCATTTGAAACGGGTTTAAC 59.557 41.667 0.00 0.00 32.11 2.01
5948 7692 4.807304 ACGGGTTTAACGTATGATGCTTAG 59.193 41.667 0.00 0.00 43.60 2.18
6045 7789 8.844287 TATGTATCCCATCCCCTTCTGAAAGAC 61.844 44.444 0.00 0.00 37.61 3.01
6214 7958 8.094798 ACGTTTACTCAAAATTTCTCATAGCA 57.905 30.769 0.00 0.00 0.00 3.49
6636 8418 6.488683 ACCTGAAATTGAGGTAAATCGTTTCA 59.511 34.615 1.32 0.00 42.35 2.69
6646 8428 9.672086 TGAGGTAAATCGTTTCAATTTAACAAG 57.328 29.630 6.46 0.00 38.28 3.16
6842 8634 4.032672 GTCGACATCTGCTTCATCTTTCAG 59.967 45.833 11.55 0.00 0.00 3.02
6863 8655 3.951037 AGCACAACCTACACATTCAACAA 59.049 39.130 0.00 0.00 0.00 2.83
6883 8675 6.551385 ACAACATGAGAAACTGAGAATCAC 57.449 37.500 0.00 0.00 42.56 3.06
6884 8676 6.294473 ACAACATGAGAAACTGAGAATCACT 58.706 36.000 0.00 0.00 42.56 3.41
6885 8677 6.769822 ACAACATGAGAAACTGAGAATCACTT 59.230 34.615 0.00 0.00 42.56 3.16
6886 8678 7.933577 ACAACATGAGAAACTGAGAATCACTTA 59.066 33.333 0.00 0.00 42.56 2.24
7022 8822 6.834168 AAGGAACAAGAAAACTCTGAACAA 57.166 33.333 0.00 0.00 0.00 2.83
7038 8838 5.976534 TCTGAACAACACAACAACATAATGC 59.023 36.000 0.00 0.00 0.00 3.56
7075 8919 8.363390 AGAAGAAGAAAATTGACCTTGATTTCC 58.637 33.333 0.00 0.00 31.91 3.13
7108 8952 1.208259 GCTTTGGTTTTGCTTCACCG 58.792 50.000 0.00 0.00 35.60 4.94
7195 9039 4.225942 TCCTACAGGCAATTGATCAGAAGT 59.774 41.667 10.34 0.00 34.44 3.01
7211 9058 5.050490 TCAGAAGTCAGCACAGTAAGTTTC 58.950 41.667 0.00 0.00 0.00 2.78
7212 9059 4.212214 CAGAAGTCAGCACAGTAAGTTTCC 59.788 45.833 0.00 0.00 0.00 3.13
7345 9194 3.581024 TGCTCATTGATGGCACTTTTC 57.419 42.857 0.00 0.00 31.96 2.29
7394 9243 9.119418 TGTTCAGAACTTCAGATGTAAAATTGA 57.881 29.630 14.51 0.00 0.00 2.57
7403 9252 7.707624 TCAGATGTAAAATTGATTTCCAGCT 57.292 32.000 0.00 0.00 31.68 4.24
7569 9418 3.990092 TGTACTGAATGTGGTGTCTGAC 58.010 45.455 0.00 0.00 0.00 3.51
7609 9458 8.697507 AATATGAAATCATTAAGGGGTGACTC 57.302 34.615 0.55 0.00 37.76 3.36
7610 9459 5.512942 TGAAATCATTAAGGGGTGACTCA 57.487 39.130 0.00 0.00 0.00 3.41
7611 9460 5.886609 TGAAATCATTAAGGGGTGACTCAA 58.113 37.500 0.00 0.00 0.00 3.02
7678 9528 4.021981 GCTCCAAACCAAACTAGCAGAATT 60.022 41.667 0.00 0.00 0.00 2.17
7775 9625 9.520204 GTTGTACCCTGAAATGATATGAAATTG 57.480 33.333 0.00 0.00 0.00 2.32
8188 10038 8.160106 AGGAAAGTTTATCTGAGAACATGAAGT 58.840 33.333 0.00 0.00 0.00 3.01
8189 10039 9.436957 GGAAAGTTTATCTGAGAACATGAAGTA 57.563 33.333 0.00 0.00 0.00 2.24
8461 10483 0.175760 GGTCATTCAGGCAGTAGCGA 59.824 55.000 0.00 0.00 43.41 4.93
8555 10577 1.871039 GCACAAAGTCTACCTGCGAAA 59.129 47.619 0.00 0.00 0.00 3.46
8568 10590 1.388093 CTGCGAAACAGTCTCATCACG 59.612 52.381 0.00 0.00 41.86 4.35
8575 10597 5.444613 CGAAACAGTCTCATCACGGTTATTG 60.445 44.000 0.00 0.00 34.11 1.90
8592 10614 3.522731 GCACACCAACAACGGGCA 61.523 61.111 0.00 0.00 0.00 5.36
8607 10629 1.220749 GGCAGCCCACGACAAGATA 59.779 57.895 0.00 0.00 0.00 1.98
8615 10637 3.000727 CCCACGACAAGATAAACAGGTC 58.999 50.000 0.00 0.00 0.00 3.85
8784 10806 2.626780 CCGGAGCGTGTCTCTGTCA 61.627 63.158 0.00 0.00 44.91 3.58
8879 10907 1.522668 CAGGTGGCAGTCAATCGAAA 58.477 50.000 0.00 0.00 0.00 3.46
8916 10968 4.437239 AGATTGTTCTCTCTATGCAACGG 58.563 43.478 0.00 0.00 0.00 4.44
8945 10997 5.046910 ACTTGCAAACAATACGGATTGAG 57.953 39.130 27.03 14.29 44.59 3.02
8947 10999 4.418013 TGCAAACAATACGGATTGAGTG 57.582 40.909 27.03 21.72 44.59 3.51
8958 11014 9.203421 CAATACGGATTGAGTGCTATGTATTTA 57.797 33.333 15.69 0.00 44.59 1.40
8959 11015 9.944376 AATACGGATTGAGTGCTATGTATTTAT 57.056 29.630 0.00 0.00 29.62 1.40
8960 11016 9.944376 ATACGGATTGAGTGCTATGTATTTATT 57.056 29.630 0.00 0.00 0.00 1.40
9002 11083 2.928334 AGGCATTGTGATGATCAGGAC 58.072 47.619 0.09 0.51 35.16 3.85
9026 11108 1.202794 TCACATTGCTCTGCTGGTTCA 60.203 47.619 0.00 0.00 0.00 3.18
9077 11159 1.571460 GGCTCACTGCAACGACAAG 59.429 57.895 0.00 0.00 45.15 3.16
9118 11206 2.159653 GCTGACAAGCGACAATACCAAG 60.160 50.000 0.00 0.00 40.27 3.61
9121 11209 2.673368 GACAAGCGACAATACCAAGGAG 59.327 50.000 0.00 0.00 0.00 3.69
9248 11336 1.370414 CAAGCCGCCACGAAACAAG 60.370 57.895 0.00 0.00 0.00 3.16
9249 11337 1.525077 AAGCCGCCACGAAACAAGA 60.525 52.632 0.00 0.00 0.00 3.02
9250 11338 1.098712 AAGCCGCCACGAAACAAGAA 61.099 50.000 0.00 0.00 0.00 2.52
9251 11339 1.370051 GCCGCCACGAAACAAGAAC 60.370 57.895 0.00 0.00 0.00 3.01
9302 11394 0.109272 TACGGCGAGAGAAGCACAAG 60.109 55.000 16.62 0.00 36.08 3.16
9323 11415 1.561643 ATCACCTTCGCTTCTCCTGA 58.438 50.000 0.00 0.00 0.00 3.86
9453 11545 3.767806 GGACCGGTCGAACCCTCC 61.768 72.222 27.68 8.80 33.75 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.106029 TCACGGACTTAGAAAATCTCCG 57.894 45.455 5.37 5.37 43.88 4.63
3 4 5.235516 TGTTCACGGACTTAGAAAATCTCC 58.764 41.667 0.00 0.00 0.00 3.71
4 5 6.969828 ATGTTCACGGACTTAGAAAATCTC 57.030 37.500 0.00 0.00 0.00 2.75
10 11 9.715121 AGTTTTATAATGTTCACGGACTTAGAA 57.285 29.630 0.00 0.00 0.00 2.10
11 12 9.362539 GAGTTTTATAATGTTCACGGACTTAGA 57.637 33.333 0.00 0.00 0.00 2.10
12 13 8.318876 CGAGTTTTATAATGTTCACGGACTTAG 58.681 37.037 0.00 0.00 0.00 2.18
14 15 6.647895 ACGAGTTTTATAATGTTCACGGACTT 59.352 34.615 0.00 0.00 0.00 3.01
16 17 6.399204 ACGAGTTTTATAATGTTCACGGAC 57.601 37.500 0.00 0.00 0.00 4.79
17 18 8.434661 GTTAACGAGTTTTATAATGTTCACGGA 58.565 33.333 0.00 0.00 0.00 4.69
18 19 8.222433 TGTTAACGAGTTTTATAATGTTCACGG 58.778 33.333 0.26 0.00 0.00 4.94
19 20 9.246423 CTGTTAACGAGTTTTATAATGTTCACG 57.754 33.333 0.26 0.00 0.00 4.35
236 237 0.258774 AAAGTGGACACTGCTTGGGT 59.741 50.000 5.63 0.00 41.58 4.51
242 243 1.967319 TCCTTCAAAGTGGACACTGC 58.033 50.000 5.63 0.00 41.58 4.40
246 247 5.993748 AAGTTTTTCCTTCAAAGTGGACA 57.006 34.783 0.00 0.00 31.24 4.02
247 248 8.766000 TTTAAAGTTTTTCCTTCAAAGTGGAC 57.234 30.769 0.00 0.00 31.24 4.02
248 249 7.547722 GCTTTAAAGTTTTTCCTTCAAAGTGGA 59.452 33.333 16.38 0.00 0.00 4.02
250 251 8.479313 AGCTTTAAAGTTTTTCCTTCAAAGTG 57.521 30.769 16.38 0.00 0.00 3.16
251 252 9.502091 AAAGCTTTAAAGTTTTTCCTTCAAAGT 57.498 25.926 20.44 0.00 36.25 2.66
252 253 9.973246 GAAAGCTTTAAAGTTTTTCCTTCAAAG 57.027 29.630 24.96 0.00 39.15 2.77
253 254 9.719355 AGAAAGCTTTAAAGTTTTTCCTTCAAA 57.281 25.926 24.96 0.00 39.15 2.69
261 275 5.588648 GGCCCAAGAAAGCTTTAAAGTTTTT 59.411 36.000 24.96 19.87 39.15 1.94
266 280 3.829026 AGAGGCCCAAGAAAGCTTTAAAG 59.171 43.478 12.68 11.02 30.14 1.85
278 292 2.777692 TCCCTACAAATAGAGGCCCAAG 59.222 50.000 0.00 0.00 0.00 3.61
394 409 7.397192 AGAACCAACATCCATTAGCATACTTTT 59.603 33.333 0.00 0.00 0.00 2.27
400 415 4.858850 TCAGAACCAACATCCATTAGCAT 58.141 39.130 0.00 0.00 0.00 3.79
403 418 7.050377 ACAGTATCAGAACCAACATCCATTAG 58.950 38.462 0.00 0.00 0.00 1.73
435 451 1.002087 GTCTGGTCGGGTCATTTGTCT 59.998 52.381 0.00 0.00 0.00 3.41
439 455 1.295423 CCGTCTGGTCGGGTCATTT 59.705 57.895 0.00 0.00 45.88 2.32
440 456 2.978824 CCGTCTGGTCGGGTCATT 59.021 61.111 0.00 0.00 45.88 2.57
498 523 3.717392 AGGCTAGAAGAGATTTAACCCCC 59.283 47.826 0.00 0.00 0.00 5.40
499 524 4.656575 AGAGGCTAGAAGAGATTTAACCCC 59.343 45.833 0.00 0.00 0.00 4.95
500 525 5.221561 GGAGAGGCTAGAAGAGATTTAACCC 60.222 48.000 0.00 0.00 0.00 4.11
501 526 5.508320 CGGAGAGGCTAGAAGAGATTTAACC 60.508 48.000 0.00 0.00 0.00 2.85
502 527 5.299782 TCGGAGAGGCTAGAAGAGATTTAAC 59.700 44.000 0.00 0.00 0.00 2.01
524 549 7.793927 ATTAATTTCTTTCTAAGCTCCCTCG 57.206 36.000 0.00 0.00 0.00 4.63
554 603 4.338379 ACGGAGGGAGCATTAGTATTTC 57.662 45.455 0.00 0.00 0.00 2.17
572 621 0.442310 CGCAGTACATTGTGGAACGG 59.558 55.000 0.00 0.00 42.39 4.44
659 708 7.802738 TCATCAAAAGACGTCGTTTCATATTT 58.197 30.769 23.73 7.78 0.00 1.40
661 710 6.961359 TCATCAAAAGACGTCGTTTCATAT 57.039 33.333 23.73 15.37 0.00 1.78
663 712 5.666969 TTCATCAAAAGACGTCGTTTCAT 57.333 34.783 23.73 15.98 0.00 2.57
664 713 5.465390 AGATTCATCAAAAGACGTCGTTTCA 59.535 36.000 23.73 14.35 0.00 2.69
665 714 5.916969 AGATTCATCAAAAGACGTCGTTTC 58.083 37.500 23.73 12.74 0.00 2.78
666 715 5.924475 AGATTCATCAAAAGACGTCGTTT 57.076 34.783 21.42 21.42 0.00 3.60
667 716 7.330946 TCATTAGATTCATCAAAAGACGTCGTT 59.669 33.333 11.11 11.11 0.00 3.85
668 717 6.811665 TCATTAGATTCATCAAAAGACGTCGT 59.188 34.615 10.46 3.44 0.00 4.34
669 718 7.221828 TCATTAGATTCATCAAAAGACGTCG 57.778 36.000 10.46 0.00 0.00 5.12
670 719 8.279103 GGATCATTAGATTCATCAAAAGACGTC 58.721 37.037 7.70 7.70 33.72 4.34
695 1044 7.331026 TGTGGAGAAAGACATTTACATCTAGG 58.669 38.462 0.00 0.00 0.00 3.02
708 1070 6.377327 TTGATCAAGTTTGTGGAGAAAGAC 57.623 37.500 3.38 0.00 0.00 3.01
710 1072 6.799512 ACTTTGATCAAGTTTGTGGAGAAAG 58.200 36.000 8.41 1.10 43.89 2.62
723 1085 7.756722 AGTCAAAACTCAACAACTTTGATCAAG 59.243 33.333 8.41 5.87 39.32 3.02
738 1100 9.810545 ATAAATTTTCGGAAAAGTCAAAACTCA 57.189 25.926 19.46 0.00 33.48 3.41
746 1108 6.797995 TGTGCGTATAAATTTTCGGAAAAGTC 59.202 34.615 19.46 6.48 33.22 3.01
783 1145 7.159437 GCATAATGTGCGTATAAATTTTGCA 57.841 32.000 0.00 0.00 45.23 4.08
798 1160 2.632377 ACTCCCTCGTTGCATAATGTG 58.368 47.619 0.00 0.00 0.00 3.21
799 1161 4.481368 TTACTCCCTCGTTGCATAATGT 57.519 40.909 0.00 0.00 0.00 2.71
800 1162 6.146184 CAGTATTACTCCCTCGTTGCATAATG 59.854 42.308 0.00 0.00 0.00 1.90
801 1163 6.183360 ACAGTATTACTCCCTCGTTGCATAAT 60.183 38.462 0.00 0.00 0.00 1.28
802 1164 5.128171 ACAGTATTACTCCCTCGTTGCATAA 59.872 40.000 0.00 0.00 0.00 1.90
803 1165 4.647853 ACAGTATTACTCCCTCGTTGCATA 59.352 41.667 0.00 0.00 0.00 3.14
804 1166 3.451178 ACAGTATTACTCCCTCGTTGCAT 59.549 43.478 0.00 0.00 0.00 3.96
805 1167 2.829720 ACAGTATTACTCCCTCGTTGCA 59.170 45.455 0.00 0.00 0.00 4.08
806 1168 3.521947 ACAGTATTACTCCCTCGTTGC 57.478 47.619 0.00 0.00 0.00 4.17
807 1169 5.821470 TCTCTACAGTATTACTCCCTCGTTG 59.179 44.000 0.00 0.00 0.00 4.10
808 1170 5.999044 TCTCTACAGTATTACTCCCTCGTT 58.001 41.667 0.00 0.00 0.00 3.85
809 1171 5.627182 TCTCTACAGTATTACTCCCTCGT 57.373 43.478 0.00 0.00 0.00 4.18
810 1172 6.543100 AGTTTCTCTACAGTATTACTCCCTCG 59.457 42.308 0.00 0.00 0.00 4.63
811 1173 7.556996 TGAGTTTCTCTACAGTATTACTCCCTC 59.443 40.741 0.00 0.00 31.99 4.30
812 1174 7.411808 TGAGTTTCTCTACAGTATTACTCCCT 58.588 38.462 0.00 0.00 31.99 4.20
813 1175 7.642082 TGAGTTTCTCTACAGTATTACTCCC 57.358 40.000 0.00 0.00 31.99 4.30
814 1176 8.521176 TGTTGAGTTTCTCTACAGTATTACTCC 58.479 37.037 9.21 0.00 40.15 3.85
894 1256 2.668212 CGGCAAAAGGCGACAGGA 60.668 61.111 5.46 0.00 46.16 3.86
895 1257 4.404654 GCGGCAAAAGGCGACAGG 62.405 66.667 15.65 0.00 46.16 4.00
896 1258 3.659092 TGCGGCAAAAGGCGACAG 61.659 61.111 15.65 0.00 46.16 3.51
897 1259 3.959975 GTGCGGCAAAAGGCGACA 61.960 61.111 15.65 9.59 46.16 4.35
899 1261 4.947147 AGGTGCGGCAAAAGGCGA 62.947 61.111 15.65 0.00 46.16 5.54
902 1264 2.650778 GGAAGGTGCGGCAAAAGG 59.349 61.111 3.23 0.00 0.00 3.11
903 1265 1.231958 TACGGAAGGTGCGGCAAAAG 61.232 55.000 3.23 0.00 34.75 2.27
904 1266 1.227883 TACGGAAGGTGCGGCAAAA 60.228 52.632 3.23 0.00 34.75 2.44
936 2097 0.928229 CGATTCGATTGGGACGGAAC 59.072 55.000 0.00 0.00 0.00 3.62
937 2098 0.818938 TCGATTCGATTGGGACGGAA 59.181 50.000 4.29 0.00 0.00 4.30
1120 2296 0.032952 TGTGTGTGCTTACCGAGGTC 59.967 55.000 0.00 0.00 0.00 3.85
1149 2325 1.508808 TTTAGTTTCGGCGGGTGTGC 61.509 55.000 7.21 0.00 0.00 4.57
1214 2398 4.622933 CGAAGTCTGGAGAGAGAGAGAGAA 60.623 50.000 0.00 0.00 0.00 2.87
1523 2713 0.804933 GGCGCCGTAATCGAAGAACT 60.805 55.000 12.58 0.00 43.58 3.01
1639 2829 3.181510 CCGGCATAAAAGTAGTGAGCAAC 60.182 47.826 0.00 0.00 0.00 4.17
1654 2844 2.044451 CCCTTTGTGGCCGGCATA 60.044 61.111 30.85 14.39 0.00 3.14
1668 2864 1.823250 GCATCAACCAGACCAAACCCT 60.823 52.381 0.00 0.00 0.00 4.34
1695 2891 2.036098 TCCCACTGCATTGGCCTG 59.964 61.111 17.38 4.64 40.13 4.85
1790 2986 2.805546 GCTCGTAGCCATCGACCA 59.194 61.111 0.00 0.00 34.48 4.02
1813 3009 1.098129 CCATCGACGAGAGCTGAGGA 61.098 60.000 3.01 0.00 0.00 3.71
1845 3047 3.835790 TTCCGGAAACACAGGCCCG 62.836 63.158 16.28 0.00 41.47 6.13
1858 3060 0.679505 TCACACTCCTTCTGTTCCGG 59.320 55.000 0.00 0.00 0.00 5.14
1860 3062 1.694696 ACCTCACACTCCTTCTGTTCC 59.305 52.381 0.00 0.00 0.00 3.62
1940 3146 0.391263 GCGTTTCTCCGGATGTTCCT 60.391 55.000 3.57 0.00 33.30 3.36
2013 3219 3.690685 TTGTAAGATGGGCGGCGGG 62.691 63.158 9.78 0.00 0.00 6.13
2014 3220 2.124901 TTGTAAGATGGGCGGCGG 60.125 61.111 9.78 0.00 0.00 6.13
2016 3222 1.748879 TGCTTGTAAGATGGGCGGC 60.749 57.895 0.00 0.00 0.00 6.53
2035 3244 3.558505 CAAATTCCGAGAGCACAAACAG 58.441 45.455 0.00 0.00 0.00 3.16
2043 3252 3.559238 TGAAAAGCAAATTCCGAGAGC 57.441 42.857 0.00 0.00 0.00 4.09
2045 3254 5.241506 ACAAGATGAAAAGCAAATTCCGAGA 59.758 36.000 0.00 0.00 0.00 4.04
2076 3285 0.037975 CAATCCTGGCACCTGCAAAC 60.038 55.000 0.00 0.00 44.36 2.93
2184 3393 1.886542 GAATGTAATTGCGGGGGATCC 59.113 52.381 1.92 1.92 36.07 3.36
2236 3445 1.381928 ATGGCCTCAGCTTGCGAATG 61.382 55.000 3.32 0.00 39.73 2.67
2284 3493 6.265422 CCTGAAAACAGGGTATGTCTCTTTTT 59.735 38.462 8.23 0.00 43.00 1.94
2331 3540 3.455910 AGCCATCCAACATTAGCACTCTA 59.544 43.478 0.00 0.00 0.00 2.43
2370 3581 2.350772 GGAAAACGACCACAGCAATCTG 60.351 50.000 0.00 0.00 45.71 2.90
2384 3595 2.139917 TCAGTTGACGATGGGAAAACG 58.860 47.619 0.00 0.00 0.00 3.60
2397 3608 2.552155 CCCGGGAATTGAGTTCAGTTGA 60.552 50.000 18.48 0.00 38.64 3.18
2401 3612 0.322456 TGCCCGGGAATTGAGTTCAG 60.322 55.000 29.31 0.00 38.64 3.02
2447 3658 1.905215 ACTGCTTCAGCTGGTACATCT 59.095 47.619 15.13 0.00 43.15 2.90
2471 3682 6.773200 TGTCTAGATAGTTACCTGTCATCTGG 59.227 42.308 0.00 0.00 38.41 3.86
2554 3771 4.082571 TGGCTGAAAAGAGAAGCATTTAGC 60.083 41.667 0.00 0.00 46.19 3.09
2603 3820 1.340991 GGCTCCTTTGAACCAGGCATA 60.341 52.381 0.00 0.00 0.00 3.14
2709 3926 2.859538 CACAAAAATCACCTGTGCACAC 59.140 45.455 17.42 0.00 34.55 3.82
2763 3980 0.246912 GCAAGCGTTTCATCTCGTCG 60.247 55.000 0.00 0.00 0.00 5.12
2778 3995 0.892358 TTGAGGCTCTTGGCAGCAAG 60.892 55.000 16.72 0.00 41.65 4.01
2779 3996 1.151221 TTGAGGCTCTTGGCAGCAA 59.849 52.632 16.72 0.00 41.65 3.91
2882 4099 4.021807 TGCTGTTGTCACTTAGGATCGTTA 60.022 41.667 0.00 0.00 0.00 3.18
2884 4101 2.299013 TGCTGTTGTCACTTAGGATCGT 59.701 45.455 0.00 0.00 0.00 3.73
2885 4102 2.959516 TGCTGTTGTCACTTAGGATCG 58.040 47.619 0.00 0.00 0.00 3.69
2898 4117 0.963962 AAGTCAGGGCATTGCTGTTG 59.036 50.000 8.82 5.09 0.00 3.33
2933 4153 3.615110 CGGTATATGCTGAGCTAACCTGG 60.615 52.174 5.83 0.00 0.00 4.45
2939 4159 2.225041 ACTCCCGGTATATGCTGAGCTA 60.225 50.000 5.83 0.00 0.00 3.32
2959 4179 2.617274 GGTCCTGCCGCAGAAACAC 61.617 63.158 22.35 11.65 32.44 3.32
2968 4188 3.432051 GACGGAGATGGTCCTGCCG 62.432 68.421 0.00 0.00 44.35 5.69
2991 4211 3.299503 AGTTCATTGGTGGTTCAAAGCT 58.700 40.909 0.00 0.00 0.00 3.74
3051 4271 0.898320 GGAGCACTTGAGTAGCCAGA 59.102 55.000 0.00 0.00 0.00 3.86
3064 4284 1.209019 ACTGGATCTGATGTGGAGCAC 59.791 52.381 0.00 0.00 34.56 4.40
3072 4292 4.619973 GAGTAGCTTGACTGGATCTGATG 58.380 47.826 0.00 0.00 0.00 3.07
3146 4366 2.203280 TGGTCTGCGGTGTTTGGG 60.203 61.111 0.00 0.00 0.00 4.12
3270 4529 1.418908 CCATATCCAGGAAGCGGGGT 61.419 60.000 0.00 0.00 0.00 4.95
3379 4638 0.396695 GGATCCCACGTAGTCTCCCA 60.397 60.000 0.00 0.00 41.61 4.37
3414 4673 2.976490 GCTGGGCATGGACTGGAGT 61.976 63.158 0.00 0.00 0.00 3.85
3416 4675 3.731728 GGCTGGGCATGGACTGGA 61.732 66.667 0.00 0.00 0.00 3.86
3480 4831 0.181114 GCTGCTGTCCATATGGTCCA 59.819 55.000 21.28 16.90 36.34 4.02
3486 4837 1.142465 CCAAGAGGCTGCTGTCCATAT 59.858 52.381 0.00 0.00 0.00 1.78
3545 4896 7.913789 TCAACTTGGGTGTATGTAATAGAGTT 58.086 34.615 0.00 0.00 0.00 3.01
3614 5098 1.814169 GTAGTAACGGCCTGGCTGC 60.814 63.158 27.03 11.30 38.71 5.25
3628 5112 4.848357 AGCAAATTACAGAGGCATGTAGT 58.152 39.130 0.00 0.00 37.01 2.73
3629 5113 5.824904 AAGCAAATTACAGAGGCATGTAG 57.175 39.130 0.00 0.00 37.01 2.74
3730 5277 7.170320 GCAATTAGGGAAACAATGCTGATAATG 59.830 37.037 0.00 0.00 0.00 1.90
3747 5294 5.818136 TCATTTTTCTCGAGCAATTAGGG 57.182 39.130 7.81 0.00 0.00 3.53
3777 5324 4.560108 GCAAGGCATTGAACTGAAACTCAT 60.560 41.667 16.56 0.00 38.83 2.90
3779 5326 3.005155 AGCAAGGCATTGAACTGAAACTC 59.995 43.478 16.56 0.00 38.83 3.01
3821 5547 0.875908 CGGTCGTGTGATGCCTATGG 60.876 60.000 0.00 0.00 0.00 2.74
3822 5548 0.102300 TCGGTCGTGTGATGCCTATG 59.898 55.000 0.00 0.00 0.00 2.23
3823 5549 0.102481 GTCGGTCGTGTGATGCCTAT 59.898 55.000 0.00 0.00 0.00 2.57
3824 5550 0.963856 AGTCGGTCGTGTGATGCCTA 60.964 55.000 0.00 0.00 0.00 3.93
3825 5551 0.963856 TAGTCGGTCGTGTGATGCCT 60.964 55.000 0.00 0.00 0.00 4.75
3826 5552 0.525668 CTAGTCGGTCGTGTGATGCC 60.526 60.000 0.00 0.00 0.00 4.40
3827 5553 1.140407 GCTAGTCGGTCGTGTGATGC 61.140 60.000 0.00 0.00 0.00 3.91
3828 5554 0.525668 GGCTAGTCGGTCGTGTGATG 60.526 60.000 0.00 0.00 0.00 3.07
3829 5555 0.680280 AGGCTAGTCGGTCGTGTGAT 60.680 55.000 0.00 0.00 0.00 3.06
3830 5556 1.303074 AGGCTAGTCGGTCGTGTGA 60.303 57.895 0.00 0.00 0.00 3.58
3831 5557 1.154016 CAGGCTAGTCGGTCGTGTG 60.154 63.158 0.00 0.00 0.00 3.82
3832 5558 2.341101 CCAGGCTAGTCGGTCGTGT 61.341 63.158 0.00 0.00 0.00 4.49
3833 5559 1.592400 TTCCAGGCTAGTCGGTCGTG 61.592 60.000 5.36 0.00 0.00 4.35
3834 5560 1.303888 TTCCAGGCTAGTCGGTCGT 60.304 57.895 5.36 0.00 0.00 4.34
3835 5561 1.139095 GTTCCAGGCTAGTCGGTCG 59.861 63.158 5.36 0.00 0.00 4.79
3836 5562 0.108756 GTGTTCCAGGCTAGTCGGTC 60.109 60.000 5.36 2.32 0.00 4.79
3837 5563 0.542232 AGTGTTCCAGGCTAGTCGGT 60.542 55.000 5.36 0.00 0.00 4.69
3838 5564 1.471119 TAGTGTTCCAGGCTAGTCGG 58.529 55.000 0.00 0.00 0.00 4.79
3839 5565 4.278669 ACATATAGTGTTCCAGGCTAGTCG 59.721 45.833 0.00 0.00 38.01 4.18
3840 5566 5.302059 TGACATATAGTGTTCCAGGCTAGTC 59.698 44.000 0.00 0.00 42.36 2.59
3841 5567 5.208890 TGACATATAGTGTTCCAGGCTAGT 58.791 41.667 0.00 0.00 42.36 2.57
3842 5568 5.791336 TGACATATAGTGTTCCAGGCTAG 57.209 43.478 0.00 0.00 42.36 3.42
3843 5569 6.326323 TCATTGACATATAGTGTTCCAGGCTA 59.674 38.462 0.00 0.00 42.36 3.93
3844 5570 5.130975 TCATTGACATATAGTGTTCCAGGCT 59.869 40.000 0.00 0.00 42.36 4.58
3845 5571 5.368145 TCATTGACATATAGTGTTCCAGGC 58.632 41.667 0.00 0.00 42.36 4.85
3846 5572 9.730705 ATTATCATTGACATATAGTGTTCCAGG 57.269 33.333 0.00 0.00 42.36 4.45
3864 5590 9.936329 AGTTTACCATTGGGAACTATTATCATT 57.064 29.630 19.29 0.35 33.60 2.57
4002 5733 4.458397 AGAATAGCTGATGTGTTCCCATG 58.542 43.478 0.00 0.00 0.00 3.66
4029 5763 1.943340 GATTCGGAGAATCAAGGGCAC 59.057 52.381 15.48 0.00 45.90 5.01
4086 5820 0.964358 AGGTCACGAGGAACTACGGG 60.964 60.000 0.00 0.00 43.43 5.28
4158 5892 0.914551 CTCGTAATTGTCGCGTGAGG 59.085 55.000 5.77 0.00 0.00 3.86
4430 6166 1.271871 ACAAATCGGCAATCTGGACCA 60.272 47.619 0.00 0.00 0.00 4.02
4520 6256 2.127232 GGACGCAGCAAACGAAGC 60.127 61.111 0.00 0.00 0.00 3.86
4591 6327 4.154737 ACATTGATCTGACCGAACAACATG 59.845 41.667 0.00 0.00 37.26 3.21
4654 6390 5.543507 TGTCTGCCATTTACCAATGTTTT 57.456 34.783 0.00 0.00 38.58 2.43
4655 6391 5.070313 AGTTGTCTGCCATTTACCAATGTTT 59.930 36.000 0.00 0.00 38.58 2.83
4661 6397 3.500448 TCAGTTGTCTGCCATTTACCA 57.500 42.857 0.00 0.00 41.10 3.25
4712 6448 7.062322 AGAAATCTATGGATTAACACCATGCA 58.938 34.615 19.89 10.48 46.05 3.96
4713 6449 7.308830 GGAGAAATCTATGGATTAACACCATGC 60.309 40.741 19.89 7.61 46.05 4.06
4731 6467 9.832445 TGAACTATATGTTACCTTGGAGAAATC 57.168 33.333 0.00 0.00 39.30 2.17
4746 6482 7.956328 TTCTAGTCTGGTGTGAACTATATGT 57.044 36.000 0.00 0.00 0.00 2.29
4776 6515 5.163468 TGCCATTTTTGTCTTTTCAGCACTA 60.163 36.000 0.00 0.00 0.00 2.74
4941 6680 3.522553 CTTCTTGGTACGAGATCAACCC 58.477 50.000 0.00 0.00 31.97 4.11
4951 6690 1.002087 AGGGAGTTGCTTCTTGGTACG 59.998 52.381 0.00 0.00 0.00 3.67
5033 6772 5.086104 TGGTACTCAAAGCAGGATTCTAC 57.914 43.478 0.00 0.00 0.00 2.59
5037 6776 4.225942 TCTGATGGTACTCAAAGCAGGATT 59.774 41.667 0.00 0.00 0.00 3.01
5137 6876 5.697633 GCACTCAAAATTTGGTGATCACATT 59.302 36.000 26.47 14.94 35.32 2.71
5291 7034 1.524621 GGCGAGTGCATGCAGGTAT 60.525 57.895 23.41 7.55 45.35 2.73
5420 7163 2.086869 CCTCAACTTGACCGCATGATT 58.913 47.619 0.00 0.00 0.00 2.57
5430 7173 7.201920 GGCATATAGAGTTAGTCCTCAACTTGA 60.202 40.741 0.00 0.00 39.55 3.02
5447 7190 6.430308 CCGTTCTGTAGTCTTAGGCATATAGA 59.570 42.308 0.00 0.00 0.00 1.98
5481 7224 6.095440 CGAAATCTGGATGAAACAAGGGTATT 59.905 38.462 0.00 0.00 0.00 1.89
5646 7390 7.202016 TGTTCTACAGATTTGAACACATTCC 57.798 36.000 0.00 0.00 43.15 3.01
5653 7397 9.528018 TCCAAATTTTGTTCTACAGATTTGAAC 57.472 29.630 20.34 0.00 41.14 3.18
5749 7493 1.666872 GGCTATTCGGCCGCGTTAT 60.667 57.895 23.51 13.29 42.82 1.89
5900 7644 6.801539 TCAAATGCTCACTGTTAGTTTAGG 57.198 37.500 0.00 0.00 0.00 2.69
5935 7679 8.276325 GGAAAACAATCTACTAAGCATCATACG 58.724 37.037 0.00 0.00 0.00 3.06
5937 7681 9.330063 CAGGAAAACAATCTACTAAGCATCATA 57.670 33.333 0.00 0.00 0.00 2.15
6045 7789 9.146984 TCTTGAAACTACACCTATTACATTTCG 57.853 33.333 0.00 0.00 0.00 3.46
6574 8356 4.423625 AAAGAGTAGTCAACCAACAGCT 57.576 40.909 0.00 0.00 0.00 4.24
6636 8418 6.040504 GTCTGGTGAAACTCCCTTGTTAAATT 59.959 38.462 0.00 0.00 36.74 1.82
6646 8428 4.618920 TCTTTAGTCTGGTGAAACTCCC 57.381 45.455 0.00 0.00 36.74 4.30
6842 8634 3.980646 TGTTGAATGTGTAGGTTGTGC 57.019 42.857 0.00 0.00 0.00 4.57
6863 8655 7.675062 AGTAAGTGATTCTCAGTTTCTCATGT 58.325 34.615 2.79 0.00 40.28 3.21
6886 8678 9.988815 CACTCCTTACTTCATGCTTATATAAGT 57.011 33.333 20.89 7.10 35.75 2.24
7005 8805 6.148948 TGTTGTGTTGTTCAGAGTTTTCTTG 58.851 36.000 0.00 0.00 0.00 3.02
7022 8822 9.973450 TTTATGTTAAGCATTATGTTGTTGTGT 57.027 25.926 0.00 0.00 38.94 3.72
7075 8919 5.799681 AACCAAAGCATGTTCTTTTGTTG 57.200 34.783 11.78 0.26 39.16 3.33
7108 8952 1.541588 GTTGCAACCTCCCTGATTGAC 59.458 52.381 19.15 0.00 0.00 3.18
7195 9039 2.972713 AGGAGGAAACTTACTGTGCTGA 59.027 45.455 0.00 0.00 44.43 4.26
7345 9194 5.064707 CACATACAGGATAAAGACAAACCCG 59.935 44.000 0.00 0.00 0.00 5.28
7394 9243 3.703052 CCTTAATCCTGCAAGCTGGAAAT 59.297 43.478 21.88 16.37 45.02 2.17
7403 9252 8.593945 ATTTATTTCAGTCCTTAATCCTGCAA 57.406 30.769 0.00 0.00 0.00 4.08
7438 9287 6.437928 CAAGTGAACAGCAGCAAAGTAAATA 58.562 36.000 0.00 0.00 0.00 1.40
7514 9363 2.368875 TGAAAGTCAAGAGGGTCTGTCC 59.631 50.000 0.00 0.00 0.00 4.02
7569 9418 9.034544 TGATTTCATATTCTGTATCTCAACACG 57.965 33.333 0.00 0.00 0.00 4.49
7609 9458 8.969121 TTTGTATCTTTGTACATCTGCAATTG 57.031 30.769 0.00 0.00 34.76 2.32
7610 9459 9.979578 TTTTTGTATCTTTGTACATCTGCAATT 57.020 25.926 0.00 0.00 34.76 2.32
7678 9528 3.318839 CAGAATGTTTCAGGTGCCTTTCA 59.681 43.478 0.00 0.00 0.00 2.69
7775 9625 1.202268 GCTGTCAGATGCCAAATCTGC 60.202 52.381 3.32 6.63 43.79 4.26
7968 9818 6.873605 TCTCTCGACTTTCTTTTATGCATTCA 59.126 34.615 3.54 0.00 0.00 2.57
8189 10039 9.618890 AAGATGTGTGCAGTTATATTCTTGTAT 57.381 29.630 0.00 0.00 0.00 2.29
8257 10107 5.607119 AGCCTGTTACTTTGAACGTATTG 57.393 39.130 0.00 0.00 31.59 1.90
8266 10116 5.947228 TCATGAGAAAGCCTGTTACTTTG 57.053 39.130 0.00 0.00 37.47 2.77
8461 10483 5.411781 GTGAAGACCATTGAGATTCTACGT 58.588 41.667 0.00 0.00 0.00 3.57
8555 10577 3.262420 GCAATAACCGTGATGAGACTGT 58.738 45.455 0.00 0.00 0.00 3.55
8568 10590 2.389998 CGTTGTTGGTGTGCAATAACC 58.610 47.619 7.39 7.39 32.45 2.85
8575 10597 3.483235 CTGCCCGTTGTTGGTGTGC 62.483 63.158 0.00 0.00 0.00 4.57
8592 10614 2.615493 CCTGTTTATCTTGTCGTGGGCT 60.615 50.000 0.00 0.00 0.00 5.19
8607 10629 5.533154 TGTGGTTATTTTGATCGACCTGTTT 59.467 36.000 0.00 0.00 0.00 2.83
8615 10637 6.344624 CGTTTTGTGTGTGGTTATTTTGATCG 60.345 38.462 0.00 0.00 0.00 3.69
8784 10806 3.499406 TGCCACTGCAGGGAAGAT 58.501 55.556 20.22 0.00 44.23 2.40
8879 10907 1.276989 CAATCTTTGTGCATTGGGGCT 59.723 47.619 0.00 0.00 34.04 5.19
8916 10968 3.911964 CGTATTGTTTGCAAGTAACTGCC 59.088 43.478 0.00 0.00 41.90 4.85
8958 11014 8.314751 CCTTAGTGGAACGATAATCTGGATAAT 58.685 37.037 0.00 0.00 45.86 1.28
8959 11015 7.667557 CCTTAGTGGAACGATAATCTGGATAA 58.332 38.462 0.00 0.00 45.86 1.75
8960 11016 6.295123 GCCTTAGTGGAACGATAATCTGGATA 60.295 42.308 0.00 0.00 45.86 2.59
8973 11029 4.009675 TCATCACAATGCCTTAGTGGAAC 58.990 43.478 0.00 0.00 38.35 3.62
9002 11083 0.720027 CAGCAGAGCAATGTGAGTCG 59.280 55.000 0.00 0.00 0.00 4.18
9026 11108 1.334869 CGAGTGCTTTGGCTCAAGTTT 59.665 47.619 0.00 0.00 39.59 2.66
9077 11159 2.484264 GCTAACCATGGTTGTGTGTCTC 59.516 50.000 35.49 13.62 38.92 3.36
9118 11206 3.151022 CTCCCGCCACTCTCCTCC 61.151 72.222 0.00 0.00 0.00 4.30
9121 11209 4.459089 GTGCTCCCGCCACTCTCC 62.459 72.222 0.00 0.00 34.43 3.71
9248 11336 2.426261 GTTTTCCGCGTGCCGTTC 60.426 61.111 4.92 0.00 34.38 3.95
9249 11337 4.302172 CGTTTTCCGCGTGCCGTT 62.302 61.111 4.92 0.00 34.38 4.44
9302 11394 2.093973 TCAGGAGAAGCGAAGGTGATTC 60.094 50.000 0.00 0.00 39.47 2.52
9411 11503 4.863925 GGCTGACGCTCGAGCTCC 62.864 72.222 32.88 23.75 39.32 4.70
9412 11504 4.121669 TGGCTGACGCTCGAGCTC 62.122 66.667 32.88 26.81 39.32 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.