AutoCloner

Multiple sequence alignment - TraesCS2D01G531100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G531100	chr2D	100.000	2678	0	0	1	2678	617091730	617094407	0.000000e+00	4946.0
1	TraesCS2D01G531100	chr2D	83.088	272	41	5	1399	1669	617092852	617093119	2.660000e-60	243.0
2	TraesCS2D01G531100	chr2D	83.088	272	41	5	1123	1390	617093128	617093398	2.660000e-60	243.0
3	TraesCS2D01G531100	chr2A	89.246	1432	91	20	421	1805	747251067	747252482	0.000000e+00	1733.0
4	TraesCS2D01G531100	chr2A	94.767	879	43	1	1803	2678	747253324	747254202	0.000000e+00	1365.0
5	TraesCS2D01G531100	chr2A	94.375	640	27	4	1172	1805	747318174	747317538	0.000000e+00	974.0
6	TraesCS2D01G531100	chr2A	89.493	552	39	10	18	554	747329071	747328524	0.000000e+00	680.0
7	TraesCS2D01G531100	chr2A	86.340	388	28	9	555	927	747328494	747328117	1.490000e-107	399.0
8	TraesCS2D01G531100	chr2A	95.219	251	9	1	927	1174	747327916	747327666	6.950000e-106	394.0
9	TraesCS2D01G531100	chr2A	85.130	269	40	0	1122	1390	747252078	747252346	2.630000e-70	276.0
10	TraesCS2D01G531100	chr2A	85.130	269	38	2	1123	1390	747317944	747317677	9.450000e-70	274.0
11	TraesCS2D01G531100	chr2A	85.217	230	32	2	1399	1627	747251803	747252031	4.460000e-58	235.0
12	TraesCS2D01G531100	chr2A	82.540	189	27	6	173	360	747250881	747251064	7.670000e-36	161.0
13	TraesCS2D01G531100	chr2A	80.769	104	18	2	1984	2087	624296295	624296396	2.210000e-11	80.5
14	TraesCS2D01G531100	chr2B	93.219	929	57	3	878	1805	752857575	752858498	0.000000e+00	1362.0
15	TraesCS2D01G531100	chr2B	87.975	790	65	8	1912	2678	752860907	752861689	0.000000e+00	905.0
16	TraesCS2D01G531100	chr2B	89.111	551	44	10	16	555	752856695	752857240	0.000000e+00	671.0
17	TraesCS2D01G531100	chr2B	84.224	393	48	10	173	555	752854434	752854822	1.170000e-98	370.0
18	TraesCS2D01G531100	chr2B	82.156	269	46	2	1123	1390	752858094	752858361	2.070000e-56	230.0
19	TraesCS2D01G531100	chr2B	91.379	116	7	1	1803	1918	752858740	752858852	3.570000e-34	156.0
20	TraesCS2D01G531100	chr2B	97.297	37	1	0	1984	2020	564864430	564864466	2.230000e-06	63.9
21	TraesCS2D01G531100	chr3D	79.024	615	92	23	2082	2670	83999424	83998821	1.160000e-103	387.0
22	TraesCS2D01G531100	chr6D	87.365	277	33	1	2394	2668	316472997	316472721	1.550000e-82	316.0
23	TraesCS2D01G531100	chr6A	76.786	616	99	33	2101	2678	479349714	479349105	3.350000e-79	305.0
24	TraesCS2D01G531100	chr6A	86.380	279	36	1	2394	2670	454395854	454395576	1.200000e-78	303.0
25	TraesCS2D01G531100	chr6A	90.265	113	8	3	2229	2341	513453165	513453274	7.730000e-31	145.0
26	TraesCS2D01G531100	chr6A	82.192	73	10	3	2007	2078	108187797	108187727	2.880000e-05	60.2
27	TraesCS2D01G531100	chr7D	84.354	294	44	2	2387	2678	474362532	474362825	1.210000e-73	287.0
28	TraesCS2D01G531100	chr7A	84.068	295	43	3	2386	2678	488883772	488884064	5.640000e-72	281.0
29	TraesCS2D01G531100	chr7A	85.328	259	28	9	2081	2333	591938170	591938424	2.640000e-65	259.0
30	TraesCS2D01G531100	chr7A	78.878	303	52	9	2082	2378	222387018	222387314	7.560000e-46	195.0
31	TraesCS2D01G531100	chr1A	85.145	276	40	1	2403	2678	505761894	505762168	5.640000e-72	281.0
32	TraesCS2D01G531100	chr1A	78.243	239	37	11	2102	2333	285652073	285651843	3.590000e-29	139.0
33	TraesCS2D01G531100	chr1B	81.250	256	35	7	2082	2333	552313299	552313545	7.560000e-46	195.0
34	TraesCS2D01G531100	chr1D	76.721	305	46	18	2082	2377	221080058	221079770	2.150000e-31	147.0
35	TraesCS2D01G531100	chr6B	81.319	91	13	4	2004	2093	172306476	172306389	1.330000e-08	71.3
36	TraesCS2D01G531100	chr5B	86.364	66	6	3	2259	2322	415676454	415676390	4.780000e-08	69.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G531100	chr2D	617091730	617094407	2677	False	1810.666667	4946	88.725333	1	2678	3	chr2D.!!$F1	2677
1	TraesCS2D01G531100	chr2A	747250881	747254202	3321	False	754.000000	1733	87.380000	173	2678	5	chr2A.!!$F2	2505
2	TraesCS2D01G531100	chr2A	747317538	747318174	636	True	624.000000	974	89.752500	1123	1805	2	chr2A.!!$R1	682
3	TraesCS2D01G531100	chr2A	747327666	747329071	1405	True	491.000000	680	90.350667	18	1174	3	chr2A.!!$R2	1156
4	TraesCS2D01G531100	chr2B	752854434	752861689	7255	False	615.666667	1362	88.010667	16	2678	6	chr2B.!!$F2	2662
5	TraesCS2D01G531100	chr3D	83998821	83999424	603	True	387.000000	387	79.024000	2082	2670	1	chr3D.!!$R1	588
6	TraesCS2D01G531100	chr6A	479349105	479349714	609	True	305.000000	305	76.786000	2101	2678	1	chr6A.!!$R3	577

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
576	2874	0.039888	GAAGACCCGCGCTAGATCTC	60.040	60.0	5.56	0.0	0.0	2.75	F
846	3168	1.096416	AGCCTACAGACTACAGACGC	58.904	55.0	0.00	0.0	0.0	5.19	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1627	4156	0.392461	TTGCCGCCTACATGAAGGTC	60.392	55.000	0.0	0.0	39.02	3.85	R
1908	5285	1.674962	GCTCATGCCATCAGGAAGAAC	59.325	52.381	0.0	0.0	36.89	3.01	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
25	2272	8.226819	CAGACTACCCTTTCTTTTCTTTTCTT	57.773	34.615	0.00	0.00	0.00	2.52
32	2279	9.817809	ACCCTTTCTTTTCTTTTCTTGAATTAC	57.182	29.630	0.00	0.00	0.00	1.89
60	2307	2.017559	GCTAGTGCCAGGGGTACTCG	62.018	65.000	9.32	5.09	45.10	4.18
67	2314	1.682684	CAGGGGTACTCGGTGAGCT	60.683	63.158	0.00	0.00	32.04	4.09
89	2336	2.086054	ATCAGCTCGGTGAAGTGTTC	57.914	50.000	2.69	0.00	0.00	3.18
94	2341	1.338200	GCTCGGTGAAGTGTTCTCCAT	60.338	52.381	8.15	0.00	42.09	3.41
107	2355	1.808411	TCTCCATGTCCTTTTCACGC	58.192	50.000	0.00	0.00	0.00	5.34
143	2391	1.893919	GACACAGCTGGACTCCTCCC	61.894	65.000	19.93	0.00	35.34	4.30
159	2407	0.541764	TCCCGGCAAAGGCATCTTTT	60.542	50.000	0.00	0.00	40.92	2.27
170	2418	1.168714	GCATCTTTTCCGAGTTGGCT	58.831	50.000	0.00	0.00	37.80	4.75
208	2456	0.466543	AGTGGTGGTAGACGTTTGCA	59.533	50.000	0.00	0.00	0.00	4.08
262	2510	6.903516	TGGATAAAATCATGAGTGAGACCAT	58.096	36.000	0.09	0.00	37.87	3.55
305	2553	5.983720	GCTTTATCTATAAAGTGAGGCGTGA	59.016	40.000	18.85	0.00	46.78	4.35
306	2554	6.647067	GCTTTATCTATAAAGTGAGGCGTGAT	59.353	38.462	18.85	0.00	46.78	3.06
316	2565	1.266718	TGAGGCGTGATGCTTTTTCAC	59.733	47.619	0.00	0.00	45.43	3.18
323	2581	5.789191	GGCGTGATGCTTTTTCACTAGAAAA	60.789	40.000	0.00	0.00	45.77	2.29
338	2596	5.864474	CACTAGAAAAACGTGTGCTAGATCT	59.136	40.000	17.57	0.00	34.24	2.75
529	2787	8.765219	GTGTTATATCGATGTGCTAGAAACATT	58.235	33.333	8.54	1.56	38.37	2.71
531	2789	9.586150	GTTATATCGATGTGCTAGAAACATTTG	57.414	33.333	8.54	8.51	38.37	2.32
576	2874	0.039888	GAAGACCCGCGCTAGATCTC	60.040	60.000	5.56	0.00	0.00	2.75
596	2898	6.524101	TCTCTGTGTGTGCATATGTTACTA	57.476	37.500	4.29	0.00	0.00	1.82
642	2944	8.916062	TGTTGCTTGGTATCATGATAAATCATT	58.084	29.630	16.97	0.00	44.70	2.57
664	2970	7.494298	TCATTCATGCGTTGTGTTAGTACATAT	59.506	33.333	0.00	0.00	36.50	1.78
696	3012	8.737175	CAGTAGTATTTCGCTAGAATATACCCA	58.263	37.037	0.00	0.00	36.09	4.51
698	3014	7.171630	AGTATTTCGCTAGAATATACCCAGG	57.828	40.000	0.00	0.00	36.09	4.45
701	3017	6.982160	TTTCGCTAGAATATACCCAGGTAA	57.018	37.500	0.00	0.00	36.09	2.85
706	3022	7.338703	TCGCTAGAATATACCCAGGTAATACAG	59.661	40.741	0.00	0.00	33.99	2.74
727	3046	5.824097	ACAGTTTTAGGTACACCGACATTTT	59.176	36.000	0.00	0.00	42.08	1.82
771	3092	6.549364	TGTGTGTTTATCTGGATGTCCTTTTT	59.451	34.615	0.09	0.00	36.82	1.94
803	3125	6.524101	TGCAGTTTCTTTAGACAACCTTTT	57.476	33.333	0.00	0.00	0.00	2.27
829	3151	1.927174	CATTACGTGCACTCCTACAGC	59.073	52.381	16.19	0.00	0.00	4.40
838	3160	2.729194	CACTCCTACAGCCTACAGACT	58.271	52.381	0.00	0.00	0.00	3.24
841	3163	3.266254	ACTCCTACAGCCTACAGACTACA	59.734	47.826	0.00	0.00	0.00	2.74
842	3164	3.880490	CTCCTACAGCCTACAGACTACAG	59.120	52.174	0.00	0.00	0.00	2.74
843	3165	3.522343	TCCTACAGCCTACAGACTACAGA	59.478	47.826	0.00	0.00	0.00	3.41
844	3166	3.628487	CCTACAGCCTACAGACTACAGAC	59.372	52.174	0.00	0.00	0.00	3.51
845	3167	2.085320	ACAGCCTACAGACTACAGACG	58.915	52.381	0.00	0.00	0.00	4.18
846	3168	1.096416	AGCCTACAGACTACAGACGC	58.904	55.000	0.00	0.00	0.00	5.19
850	3172	2.095364	CCTACAGACTACAGACGCGTTT	60.095	50.000	15.53	4.14	0.00	3.60
924	3447	1.822581	GGCAAATATTTCACGCGTCC	58.177	50.000	9.86	0.00	0.00	4.79
1100	3626	3.505773	GCAGGAGGATGGGGCCAT	61.506	66.667	4.39	0.00	39.69	4.40
1103	3629	3.105928	GGAGGATGGGGCCATGGT	61.106	66.667	14.67	0.00	36.70	3.55
1112	3638	4.388499	GGCCATGGTCACCGTCGT	62.388	66.667	12.68	0.00	0.00	4.34
1170	3696	1.600636	CCAGGGCAACGACATGTGT	60.601	57.895	1.15	0.00	37.60	3.72
1257	3786	7.118825	CACAGACAAAAGCTTCATCATTCTAGA	59.881	37.037	0.00	0.00	0.00	2.43
1296	3825	3.264193	TGAAGTGCCAAGATCACTACCAT	59.736	43.478	0.00	0.00	43.36	3.55
1605	4134	2.477176	GGAACTGTGCGTGCACCAA	61.477	57.895	21.19	3.79	45.63	3.67
1627	4156	1.224075	CATGAGCTATGGCCTCAACG	58.776	55.000	3.32	0.00	39.73	4.10
1628	4157	1.123077	ATGAGCTATGGCCTCAACGA	58.877	50.000	3.32	0.00	39.73	3.85
1629	4158	0.175760	TGAGCTATGGCCTCAACGAC	59.824	55.000	3.32	0.00	39.73	4.34
1650	4179	1.745087	CTTCATGTAGGCGGCAACAAT	59.255	47.619	13.08	0.00	0.00	2.71
1683	4212	0.916086	ATCCCACCGGCTGATTAACA	59.084	50.000	0.00	0.00	0.00	2.41
1770	4302	4.900635	AATAATAAGGGTTGCGCTTCAG	57.099	40.909	9.73	0.00	37.75	3.02
1771	4303	0.811281	AATAAGGGTTGCGCTTCAGC	59.189	50.000	9.73	1.84	37.75	4.26
1892	5269	6.819397	TCTCTCTATGTCGAGTTTCTTTCA	57.181	37.500	0.00	0.00	32.83	2.69
1940	7378	0.955428	GCATGAGCGGAGTGGTTTCA	60.955	55.000	0.00	0.00	0.00	2.69
2034	7489	4.759183	GGCCCTCTTATGTCATCTTTGATC	59.241	45.833	0.00	0.00	33.56	2.92
2038	7493	7.387397	GCCCTCTTATGTCATCTTTGATCTTAG	59.613	40.741	0.00	0.00	33.56	2.18
2134	7592	4.200874	CAAGTGTAAGGGTGTTGTAACCA	58.799	43.478	0.00	0.00	42.47	3.67
2153	7611	5.256806	ACCAAGCAGTAAGTATTTCCCTT	57.743	39.130	0.00	0.00	0.00	3.95
2183	7643	6.770785	AGAGCAACAACTAATCAAACCAGTAA	59.229	34.615	0.00	0.00	0.00	2.24
2243	7706	0.100503	GCACAAAACACGCTTGTCCT	59.899	50.000	0.00	0.00	34.80	3.85
2304	7767	9.405587	TGCTAGTTACAAGATTAAAATGCAAAC	57.594	29.630	0.00	0.00	0.00	2.93
2569	8076	5.551233	CTCCACTCAAAGACTGTTATCCAA	58.449	41.667	0.00	0.00	0.00	3.53
2583	8090	7.577303	ACTGTTATCCAACATGTATCCTGAAT	58.423	34.615	0.00	0.00	43.58	2.57

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	7.809546	AGAAAAGAAAAGAAAGGGTAGTCTG	57.190	36.000	0.00	0.00	0.00	3.51
1	2	8.053355	TCAAGAAAAGAAAAGAAAGGGTAGTCT	58.947	33.333	0.00	0.00	0.00	3.24
2	3	8.221965	TCAAGAAAAGAAAAGAAAGGGTAGTC	57.778	34.615	0.00	0.00	0.00	2.59
3	4	8.589701	TTCAAGAAAAGAAAAGAAAGGGTAGT	57.410	30.769	0.00	0.00	0.00	2.73
7	8	9.261180	GGTAATTCAAGAAAAGAAAAGAAAGGG	57.739	33.333	0.00	0.00	0.00	3.95
15	16	9.323985	CCAAACATGGTAATTCAAGAAAAGAAA	57.676	29.630	0.00	0.00	0.00	2.52
16	17	7.440856	GCCAAACATGGTAATTCAAGAAAAGAA	59.559	33.333	0.00	0.00	0.00	2.52
25	2272	4.157656	GCACTAGCCAAACATGGTAATTCA	59.842	41.667	0.00	0.00	33.58	2.57
41	2288	1.823976	GAGTACCCCTGGCACTAGC	59.176	63.158	0.00	0.00	41.10	3.42
67	2314	3.678056	ACACTTCACCGAGCTGATTTA	57.322	42.857	0.00	0.00	0.00	1.40
89	2336	0.443869	CGCGTGAAAAGGACATGGAG	59.556	55.000	0.00	0.00	0.00	3.86
94	2341	2.203084	TGCCGCGTGAAAAGGACA	60.203	55.556	4.92	0.00	0.00	4.02
107	2355	1.300620	TCACCTTTGTCGAGTGCCG	60.301	57.895	0.00	0.00	40.25	5.69
143	2391	3.423848	GGAAAAGATGCCTTTGCCG	57.576	52.632	0.00	0.00	45.56	5.69
159	2407	1.070786	GTGTCCAAGCCAACTCGGA	59.929	57.895	0.00	0.00	36.56	4.55
170	2418	4.381398	CCACTTTCAATGTGTTGTGTCCAA	60.381	41.667	2.95	0.00	36.69	3.53
208	2456	3.475566	TGTTTCTAGCACACAGAGCTT	57.524	42.857	0.00	0.00	43.25	3.74
262	2510	3.565307	AGCCATCTTCCACTGTTTTCAA	58.435	40.909	0.00	0.00	0.00	2.69
316	2565	7.702772	ACATAGATCTAGCACACGTTTTTCTAG	59.297	37.037	8.70	0.00	0.00	2.43
323	2581	3.131223	AGCACATAGATCTAGCACACGTT	59.869	43.478	8.70	0.00	0.00	3.99
370	2628	5.509622	GCGCTTTGTCTTGACTCATTATTTC	59.490	40.000	0.00	0.00	0.00	2.17
529	2787	5.450592	TGATTTTGCATGACAGCTAACAA	57.549	34.783	0.00	0.00	34.99	2.83
531	2789	6.204359	CCTATGATTTTGCATGACAGCTAAC	58.796	40.000	0.00	0.00	34.99	2.34
576	2874	6.758416	AGACATAGTAACATATGCACACACAG	59.242	38.462	1.58	0.00	36.75	3.66
642	2944	8.880878	AATATATGTACTAACACAACGCATGA	57.119	30.769	0.00	0.00	38.78	3.07
682	2988	8.363761	ACTGTATTACCTGGGTATATTCTAGC	57.636	38.462	0.00	0.00	0.00	3.42
696	3012	6.437162	TCGGTGTACCTAAAACTGTATTACCT	59.563	38.462	0.00	0.00	30.84	3.08
698	3014	7.090173	TGTCGGTGTACCTAAAACTGTATTAC	58.910	38.462	0.00	0.00	0.00	1.89
701	3017	5.726980	TGTCGGTGTACCTAAAACTGTAT	57.273	39.130	0.00	0.00	0.00	2.29
706	3022	5.615325	CGGAAAATGTCGGTGTACCTAAAAC	60.615	44.000	0.00	0.00	0.00	2.43
771	3092	8.050778	TGTCTAAAGAAACTGCAAAGAAAGAA	57.949	30.769	0.00	0.00	0.00	2.52
772	3093	7.624360	TGTCTAAAGAAACTGCAAAGAAAGA	57.376	32.000	0.00	0.00	0.00	2.52
803	3125	4.530710	AGGAGTGCACGTAATGTAAAGA	57.469	40.909	12.01	0.00	0.00	2.52
808	3130	2.674177	GCTGTAGGAGTGCACGTAATGT	60.674	50.000	12.01	0.00	0.00	2.71
829	3151	1.085091	ACGCGTCTGTAGTCTGTAGG	58.915	55.000	5.58	0.00	0.00	3.18
838	3160	1.342555	CGAATGGAAACGCGTCTGTA	58.657	50.000	14.44	0.00	0.00	2.74
841	3163	3.165498	GCGAATGGAAACGCGTCT	58.835	55.556	14.44	0.00	44.91	4.18
846	3168	1.423845	CCCTTCGCGAATGGAAACG	59.576	57.895	31.98	15.03	0.00	3.60
850	3172	4.830765	CGGCCCTTCGCGAATGGA	62.831	66.667	37.25	12.49	38.94	3.41
1257	3786	3.817647	ACTTCATTTCGCAGAAAGCTCTT	59.182	39.130	9.07	0.00	45.90	2.85
1296	3825	1.899437	GCTCCATCCTTGACGGGTCA	61.899	60.000	0.00	0.00	37.91	4.02
1425	3954	1.282248	ACATGTCGTTGCTTCGGTCG	61.282	55.000	0.00	0.00	0.00	4.79
1605	4134	0.769247	TGAGGCCATAGCTCATGCAT	59.231	50.000	5.01	0.00	42.74	3.96
1627	4156	0.392461	TTGCCGCCTACATGAAGGTC	60.392	55.000	0.00	0.00	39.02	3.85
1628	4157	0.676782	GTTGCCGCCTACATGAAGGT	60.677	55.000	0.00	0.00	39.02	3.50
1629	4158	0.676466	TGTTGCCGCCTACATGAAGG	60.676	55.000	0.00	0.00	39.87	3.46
1650	4179	4.819761	GGATGCTCAGCGACGCCA	62.820	66.667	17.79	7.66	0.00	5.69
1658	4187	3.790437	AGCCGGTGGGATGCTCAG	61.790	66.667	1.90	0.00	34.06	3.35
1683	4212	2.442272	ACGATAGCTCCGCCCACT	60.442	61.111	8.16	0.00	42.67	4.00
1892	5269	8.049117	TCAGGAAGAACAATATGAAGCAATAGT	58.951	33.333	0.00	0.00	0.00	2.12
1908	5285	1.674962	GCTCATGCCATCAGGAAGAAC	59.325	52.381	0.00	0.00	36.89	3.01
1940	7378	4.942761	AGATGAAAACATGCAACACCTT	57.057	36.364	0.00	0.00	0.00	3.50
2034	7489	6.664384	AGGAGGGAGAACAACTACTAACTAAG	59.336	42.308	0.00	0.00	0.00	2.18
2038	7493	5.741962	AAGGAGGGAGAACAACTACTAAC	57.258	43.478	0.00	0.00	0.00	2.34
2044	7499	3.583526	GAGGTTAAGGAGGGAGAACAACT	59.416	47.826	0.00	0.00	0.00	3.16
2134	7592	5.256806	ACCAAGGGAAATACTTACTGCTT	57.743	39.130	0.00	0.00	0.00	3.91
2153	7611	6.016610	GGTTTGATTAGTTGTTGCTCTAACCA	60.017	38.462	8.61	0.00	39.74	3.67
2183	7643	2.880890	CACTTTGTTTGCTAGGTGCTCT	59.119	45.455	0.00	0.00	43.37	4.09
2506	8010	7.048512	GCAGGTGGATTAACAGTCTACTTATT	58.951	38.462	0.00	0.00	0.00	1.40
2583	8090	8.466617	TGCCCTGTTTCTTGTAAACTTAATAA	57.533	30.769	0.00	0.00	0.00	1.40

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.