Multiple sequence alignment - TraesCS2D01G530400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G530400 chr2D 100.000 3956 0 0 1 3956 616955985 616952030 0.000000e+00 7306.0
1 TraesCS2D01G530400 chr2A 95.098 3366 99 20 617 3956 746971555 746968230 0.000000e+00 5241.0
2 TraesCS2D01G530400 chr2A 77.720 386 63 17 76 443 634628992 634629372 8.610000e-52 215.0
3 TraesCS2D01G530400 chr2A 85.714 112 11 3 529 640 684393729 684393835 3.230000e-21 113.0
4 TraesCS2D01G530400 chr2B 95.084 3275 100 28 718 3956 752493203 752489954 0.000000e+00 5099.0
5 TraesCS2D01G530400 chr7A 78.788 396 54 17 118 483 16628129 16627734 5.110000e-59 239.0
6 TraesCS2D01G530400 chr3B 75.806 434 65 25 55 463 2881057 2881475 2.430000e-42 183.0
7 TraesCS2D01G530400 chr4B 77.320 291 46 11 147 420 671664108 671663821 1.900000e-33 154.0
8 TraesCS2D01G530400 chr3D 86.131 137 17 2 505 640 606613796 606613661 3.190000e-31 147.0
9 TraesCS2D01G530400 chr3D 84.270 89 13 1 529 616 7174323 7174411 7.040000e-13 86.1
10 TraesCS2D01G530400 chr1B 85.496 131 16 3 512 639 115697787 115697657 2.480000e-27 134.0
11 TraesCS2D01G530400 chr1B 91.667 48 4 0 1501 1548 588062259 588062212 2.550000e-07 67.6
12 TraesCS2D01G530400 chr1B 91.667 48 4 0 1501 1548 588116815 588116768 2.550000e-07 67.6
13 TraesCS2D01G530400 chr1B 91.667 48 4 0 1501 1548 669933538 669933491 2.550000e-07 67.6
14 TraesCS2D01G530400 chr7D 93.750 48 3 0 1501 1548 552330466 552330419 5.480000e-09 73.1
15 TraesCS2D01G530400 chr7D 91.667 48 4 0 1501 1548 72833818 72833771 2.550000e-07 67.6
16 TraesCS2D01G530400 chr5D 91.667 48 4 0 1501 1548 341229260 341229307 2.550000e-07 67.6
17 TraesCS2D01G530400 chr5D 91.667 48 4 0 1501 1548 356536601 356536554 2.550000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G530400 chr2D 616952030 616955985 3955 True 7306 7306 100.000 1 3956 1 chr2D.!!$R1 3955
1 TraesCS2D01G530400 chr2A 746968230 746971555 3325 True 5241 5241 95.098 617 3956 1 chr2A.!!$R1 3339
2 TraesCS2D01G530400 chr2B 752489954 752493203 3249 True 5099 5099 95.084 718 3956 1 chr2B.!!$R1 3238

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
492 493 0.039256 TGAAATGTCGCAAAGGCAGC 60.039 50.0 0.00 0.00 38.18 5.25 F
763 765 0.106335 TCAAAACTTACCGCGTGGGA 59.894 50.0 21.14 8.31 40.75 4.37 F
766 768 0.392060 AAACTTACCGCGTGGGATCC 60.392 55.0 21.14 1.92 40.75 3.36 F
1905 1943 0.466922 AGTATGGCCAGATTGCTGCC 60.467 55.0 13.05 0.00 40.91 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2403 2441 0.179020 CCACCTTGTGCAGTTCTGGA 60.179 55.000 0.00 0.00 31.34 3.86 R
2595 2633 3.673484 CCAAACGCCCAGCCACAG 61.673 66.667 0.00 0.00 0.00 3.66 R
2763 2801 2.564062 CAAGACATGCCATTTTGGGTCT 59.436 45.455 0.00 0.00 37.91 3.85 R
3145 3183 0.756903 ACCTGTATGGCCGGTCATAC 59.243 55.000 40.01 40.01 45.76 2.39 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 7.919151 ACTAACTTATATATCTTCAAGGCCCC 58.081 38.462 0.00 0.00 0.00 5.80
33 34 6.780198 AACTTATATATCTTCAAGGCCCCA 57.220 37.500 0.00 0.00 0.00 4.96
34 35 6.977244 ACTTATATATCTTCAAGGCCCCAT 57.023 37.500 0.00 0.00 0.00 4.00
35 36 7.348680 ACTTATATATCTTCAAGGCCCCATT 57.651 36.000 0.00 0.00 0.00 3.16
36 37 8.463055 ACTTATATATCTTCAAGGCCCCATTA 57.537 34.615 0.00 0.00 0.00 1.90
37 38 9.073587 ACTTATATATCTTCAAGGCCCCATTAT 57.926 33.333 0.00 0.00 0.00 1.28
38 39 9.927081 CTTATATATCTTCAAGGCCCCATTATT 57.073 33.333 0.00 0.00 0.00 1.40
41 42 5.619132 ATCTTCAAGGCCCCATTATTTTG 57.381 39.130 0.00 0.00 0.00 2.44
42 43 4.424842 TCTTCAAGGCCCCATTATTTTGT 58.575 39.130 0.00 0.00 0.00 2.83
43 44 4.466015 TCTTCAAGGCCCCATTATTTTGTC 59.534 41.667 0.00 0.00 0.00 3.18
44 45 4.059773 TCAAGGCCCCATTATTTTGTCT 57.940 40.909 0.00 0.00 0.00 3.41
45 46 4.424842 TCAAGGCCCCATTATTTTGTCTT 58.575 39.130 0.00 0.00 0.00 3.01
46 47 4.843516 TCAAGGCCCCATTATTTTGTCTTT 59.156 37.500 0.00 0.00 0.00 2.52
47 48 5.046663 TCAAGGCCCCATTATTTTGTCTTTC 60.047 40.000 0.00 0.00 0.00 2.62
48 49 3.774766 AGGCCCCATTATTTTGTCTTTCC 59.225 43.478 0.00 0.00 0.00 3.13
49 50 3.430236 GGCCCCATTATTTTGTCTTTCCG 60.430 47.826 0.00 0.00 0.00 4.30
50 51 3.780902 CCCCATTATTTTGTCTTTCCGC 58.219 45.455 0.00 0.00 0.00 5.54
51 52 3.430236 CCCCATTATTTTGTCTTTCCGCC 60.430 47.826 0.00 0.00 0.00 6.13
52 53 3.447229 CCCATTATTTTGTCTTTCCGCCT 59.553 43.478 0.00 0.00 0.00 5.52
53 54 4.423732 CCATTATTTTGTCTTTCCGCCTG 58.576 43.478 0.00 0.00 0.00 4.85
54 55 3.569250 TTATTTTGTCTTTCCGCCTGC 57.431 42.857 0.00 0.00 0.00 4.85
55 56 0.603065 ATTTTGTCTTTCCGCCTGCC 59.397 50.000 0.00 0.00 0.00 4.85
56 57 1.791103 TTTTGTCTTTCCGCCTGCCG 61.791 55.000 0.00 0.00 0.00 5.69
93 94 2.027751 GCCATAGCCGACTCCGAC 59.972 66.667 0.00 0.00 38.22 4.79
94 95 2.331805 CCATAGCCGACTCCGACG 59.668 66.667 0.00 0.00 38.22 5.12
95 96 2.353607 CATAGCCGACTCCGACGC 60.354 66.667 0.00 0.00 38.22 5.19
96 97 3.593794 ATAGCCGACTCCGACGCC 61.594 66.667 0.00 0.00 38.22 5.68
113 114 3.866582 CCCCACCGCCTCATCCTC 61.867 72.222 0.00 0.00 0.00 3.71
114 115 3.866582 CCCACCGCCTCATCCTCC 61.867 72.222 0.00 0.00 0.00 4.30
115 116 4.227134 CCACCGCCTCATCCTCCG 62.227 72.222 0.00 0.00 0.00 4.63
116 117 3.461773 CACCGCCTCATCCTCCGT 61.462 66.667 0.00 0.00 0.00 4.69
117 118 2.125326 CACCGCCTCATCCTCCGTA 61.125 63.158 0.00 0.00 0.00 4.02
118 119 1.828660 ACCGCCTCATCCTCCGTAG 60.829 63.158 0.00 0.00 0.00 3.51
119 120 2.336809 CGCCTCATCCTCCGTAGC 59.663 66.667 0.00 0.00 0.00 3.58
120 121 2.737830 GCCTCATCCTCCGTAGCC 59.262 66.667 0.00 0.00 0.00 3.93
121 122 3.043419 CCTCATCCTCCGTAGCCG 58.957 66.667 0.00 0.00 0.00 5.52
122 123 2.336809 CTCATCCTCCGTAGCCGC 59.663 66.667 0.00 0.00 0.00 6.53
123 124 3.214250 CTCATCCTCCGTAGCCGCC 62.214 68.421 0.00 0.00 0.00 6.13
124 125 4.301027 CATCCTCCGTAGCCGCCC 62.301 72.222 0.00 0.00 0.00 6.13
125 126 4.853142 ATCCTCCGTAGCCGCCCA 62.853 66.667 0.00 0.00 0.00 5.36
140 141 2.990967 CCACCATGCCGCAACCTT 60.991 61.111 0.00 0.00 0.00 3.50
141 142 1.677300 CCACCATGCCGCAACCTTA 60.677 57.895 0.00 0.00 0.00 2.69
142 143 1.656818 CCACCATGCCGCAACCTTAG 61.657 60.000 0.00 0.00 0.00 2.18
143 144 2.046285 ACCATGCCGCAACCTTAGC 61.046 57.895 0.00 0.00 0.00 3.09
144 145 2.774799 CCATGCCGCAACCTTAGCC 61.775 63.158 0.00 0.00 0.00 3.93
145 146 2.045708 CATGCCGCAACCTTAGCCA 61.046 57.895 0.00 0.00 0.00 4.75
146 147 1.750399 ATGCCGCAACCTTAGCCAG 60.750 57.895 0.00 0.00 0.00 4.85
147 148 3.815396 GCCGCAACCTTAGCCAGC 61.815 66.667 0.00 0.00 0.00 4.85
149 150 4.166011 CGCAACCTTAGCCAGCGC 62.166 66.667 0.00 0.00 41.95 5.92
150 151 4.166011 GCAACCTTAGCCAGCGCG 62.166 66.667 0.00 0.00 41.18 6.86
151 152 2.434185 CAACCTTAGCCAGCGCGA 60.434 61.111 12.10 0.00 41.18 5.87
152 153 2.434359 AACCTTAGCCAGCGCGAC 60.434 61.111 12.10 0.04 41.18 5.19
153 154 3.952628 AACCTTAGCCAGCGCGACC 62.953 63.158 12.10 0.00 41.18 4.79
154 155 4.451150 CCTTAGCCAGCGCGACCA 62.451 66.667 12.10 0.00 41.18 4.02
155 156 3.188786 CTTAGCCAGCGCGACCAC 61.189 66.667 12.10 0.00 41.18 4.16
156 157 4.752879 TTAGCCAGCGCGACCACC 62.753 66.667 12.10 0.00 41.18 4.61
165 166 4.404098 GCGACCACCGTCCCCAAT 62.404 66.667 0.00 0.00 41.15 3.16
166 167 2.125269 CGACCACCGTCCCCAATC 60.125 66.667 0.00 0.00 35.40 2.67
167 168 2.271173 GACCACCGTCCCCAATCC 59.729 66.667 0.00 0.00 32.40 3.01
168 169 3.335729 ACCACCGTCCCCAATCCC 61.336 66.667 0.00 0.00 0.00 3.85
169 170 4.483243 CCACCGTCCCCAATCCCG 62.483 72.222 0.00 0.00 0.00 5.14
173 174 4.547367 CGTCCCCAATCCCGCCTC 62.547 72.222 0.00 0.00 0.00 4.70
174 175 4.191015 GTCCCCAATCCCGCCTCC 62.191 72.222 0.00 0.00 0.00 4.30
177 178 4.547367 CCCAATCCCGCCTCCGTC 62.547 72.222 0.00 0.00 0.00 4.79
178 179 3.470888 CCAATCCCGCCTCCGTCT 61.471 66.667 0.00 0.00 0.00 4.18
179 180 2.107141 CAATCCCGCCTCCGTCTC 59.893 66.667 0.00 0.00 0.00 3.36
180 181 3.155167 AATCCCGCCTCCGTCTCC 61.155 66.667 0.00 0.00 0.00 3.71
181 182 3.976490 AATCCCGCCTCCGTCTCCA 62.976 63.158 0.00 0.00 0.00 3.86
182 183 3.758133 ATCCCGCCTCCGTCTCCAT 62.758 63.158 0.00 0.00 0.00 3.41
183 184 4.227134 CCCGCCTCCGTCTCCATG 62.227 72.222 0.00 0.00 0.00 3.66
184 185 4.899239 CCGCCTCCGTCTCCATGC 62.899 72.222 0.00 0.00 0.00 4.06
185 186 4.899239 CGCCTCCGTCTCCATGCC 62.899 72.222 0.00 0.00 0.00 4.40
186 187 4.899239 GCCTCCGTCTCCATGCCG 62.899 72.222 0.00 0.00 0.00 5.69
187 188 4.899239 CCTCCGTCTCCATGCCGC 62.899 72.222 0.00 0.00 0.00 6.53
188 189 4.899239 CTCCGTCTCCATGCCGCC 62.899 72.222 0.00 0.00 0.00 6.13
223 224 4.008933 CCTCCCCGGCCGATCATC 62.009 72.222 30.73 0.00 0.00 2.92
224 225 4.363990 CTCCCCGGCCGATCATCG 62.364 72.222 30.73 8.54 40.07 3.84
226 227 4.235762 CCCCGGCCGATCATCGTT 62.236 66.667 30.73 0.00 38.40 3.85
227 228 2.967076 CCCGGCCGATCATCGTTG 60.967 66.667 30.73 5.91 38.40 4.10
228 229 3.640000 CCGGCCGATCATCGTTGC 61.640 66.667 30.73 2.85 38.40 4.17
229 230 3.988385 CGGCCGATCATCGTTGCG 61.988 66.667 24.07 0.00 38.40 4.85
230 231 2.584970 GGCCGATCATCGTTGCGA 60.585 61.111 6.25 0.00 38.40 5.10
231 232 2.621000 GCCGATCATCGTTGCGAC 59.379 61.111 6.25 0.00 39.18 5.19
245 246 2.733218 CGACGCGCCACTGAAGAA 60.733 61.111 5.73 0.00 0.00 2.52
246 247 2.720758 CGACGCGCCACTGAAGAAG 61.721 63.158 5.73 0.00 0.00 2.85
247 248 1.664965 GACGCGCCACTGAAGAAGT 60.665 57.895 5.73 0.00 40.93 3.01
255 256 1.456287 ACTGAAGAAGTGGGCCACC 59.544 57.895 32.30 18.46 37.88 4.61
256 257 1.352622 ACTGAAGAAGTGGGCCACCA 61.353 55.000 32.30 20.89 46.94 4.17
264 265 4.380945 TGGGCCACCAATCCCTGC 62.381 66.667 0.00 0.00 45.87 4.85
267 268 4.740822 GCCACCAATCCCTGCGGT 62.741 66.667 0.00 0.00 0.00 5.68
269 270 2.751436 CACCAATCCCTGCGGTGG 60.751 66.667 0.00 0.00 45.32 4.61
270 271 2.933287 ACCAATCCCTGCGGTGGA 60.933 61.111 6.90 6.10 36.05 4.02
271 272 2.124570 CCAATCCCTGCGGTGGAG 60.125 66.667 8.48 0.00 34.80 3.86
272 273 2.124570 CAATCCCTGCGGTGGAGG 60.125 66.667 8.48 0.00 34.80 4.30
273 274 2.610859 AATCCCTGCGGTGGAGGT 60.611 61.111 8.48 0.00 34.80 3.85
274 275 2.971598 AATCCCTGCGGTGGAGGTG 61.972 63.158 8.48 0.00 34.80 4.00
275 276 4.954118 TCCCTGCGGTGGAGGTGT 62.954 66.667 3.61 0.00 0.00 4.16
276 277 4.704833 CCCTGCGGTGGAGGTGTG 62.705 72.222 3.61 0.00 0.00 3.82
277 278 3.625897 CCTGCGGTGGAGGTGTGA 61.626 66.667 0.00 0.00 0.00 3.58
278 279 2.425592 CTGCGGTGGAGGTGTGAA 59.574 61.111 0.00 0.00 0.00 3.18
279 280 1.669115 CTGCGGTGGAGGTGTGAAG 60.669 63.158 0.00 0.00 0.00 3.02
280 281 3.050275 GCGGTGGAGGTGTGAAGC 61.050 66.667 0.00 0.00 0.00 3.86
281 282 2.738521 CGGTGGAGGTGTGAAGCG 60.739 66.667 0.00 0.00 0.00 4.68
282 283 2.358737 GGTGGAGGTGTGAAGCGG 60.359 66.667 0.00 0.00 0.00 5.52
283 284 3.050275 GTGGAGGTGTGAAGCGGC 61.050 66.667 0.00 0.00 0.00 6.53
284 285 4.329545 TGGAGGTGTGAAGCGGCC 62.330 66.667 0.00 0.00 0.00 6.13
286 287 4.373116 GAGGTGTGAAGCGGCCGA 62.373 66.667 33.48 4.15 0.00 5.54
287 288 4.681978 AGGTGTGAAGCGGCCGAC 62.682 66.667 33.48 20.78 0.00 4.79
326 327 4.413928 CCATCTCGGGTGGCAAAA 57.586 55.556 0.00 0.00 0.00 2.44
327 328 1.883021 CCATCTCGGGTGGCAAAAC 59.117 57.895 0.00 0.00 0.00 2.43
328 329 0.893270 CCATCTCGGGTGGCAAAACA 60.893 55.000 0.00 0.00 0.00 2.83
329 330 0.958091 CATCTCGGGTGGCAAAACAA 59.042 50.000 0.00 0.00 0.00 2.83
330 331 1.545582 CATCTCGGGTGGCAAAACAAT 59.454 47.619 0.00 0.00 0.00 2.71
331 332 1.243902 TCTCGGGTGGCAAAACAATC 58.756 50.000 0.00 0.00 0.00 2.67
332 333 0.958091 CTCGGGTGGCAAAACAATCA 59.042 50.000 0.00 0.00 0.00 2.57
333 334 1.339610 CTCGGGTGGCAAAACAATCAA 59.660 47.619 0.00 0.00 0.00 2.57
334 335 1.757118 TCGGGTGGCAAAACAATCAAA 59.243 42.857 0.00 0.00 0.00 2.69
335 336 2.134346 CGGGTGGCAAAACAATCAAAG 58.866 47.619 0.00 0.00 0.00 2.77
336 337 2.493035 GGGTGGCAAAACAATCAAAGG 58.507 47.619 0.00 0.00 0.00 3.11
337 338 1.872952 GGTGGCAAAACAATCAAAGGC 59.127 47.619 0.00 0.00 0.00 4.35
338 339 1.526464 GTGGCAAAACAATCAAAGGCG 59.474 47.619 0.00 0.00 0.00 5.52
339 340 1.147473 GGCAAAACAATCAAAGGCGG 58.853 50.000 0.00 0.00 0.00 6.13
340 341 1.270041 GGCAAAACAATCAAAGGCGGA 60.270 47.619 0.00 0.00 0.00 5.54
341 342 1.792367 GCAAAACAATCAAAGGCGGAC 59.208 47.619 0.00 0.00 0.00 4.79
342 343 2.050691 CAAAACAATCAAAGGCGGACG 58.949 47.619 0.00 0.00 0.00 4.79
343 344 0.039527 AAACAATCAAAGGCGGACGC 60.040 50.000 8.39 8.39 41.06 5.19
344 345 2.098298 CAATCAAAGGCGGACGCG 59.902 61.111 3.53 3.53 43.06 6.01
345 346 3.124921 AATCAAAGGCGGACGCGG 61.125 61.111 12.47 0.00 43.06 6.46
361 362 3.395687 GGGCGCGTCGATCGATTC 61.396 66.667 22.50 14.50 42.86 2.52
370 371 2.425278 CGATCGATTCGCTACTGCC 58.575 57.895 10.26 0.00 41.69 4.85
371 372 1.330779 CGATCGATTCGCTACTGCCG 61.331 60.000 10.26 0.00 41.69 5.69
372 373 1.004277 GATCGATTCGCTACTGCCGG 61.004 60.000 0.00 0.00 35.36 6.13
373 374 3.330853 CGATTCGCTACTGCCGGC 61.331 66.667 22.73 22.73 35.36 6.13
394 395 3.486263 CGCATCCGGTCAAGGAAC 58.514 61.111 0.00 0.00 44.50 3.62
395 396 2.106683 CGCATCCGGTCAAGGAACC 61.107 63.158 0.00 0.00 44.50 3.62
396 397 1.749258 GCATCCGGTCAAGGAACCC 60.749 63.158 0.00 0.00 44.50 4.11
397 398 1.077716 CATCCGGTCAAGGAACCCC 60.078 63.158 0.00 0.00 44.50 4.95
399 400 0.043637 ATCCGGTCAAGGAACCCCTA 59.956 55.000 0.00 0.00 43.48 3.53
400 401 0.906282 TCCGGTCAAGGAACCCCTAC 60.906 60.000 0.00 0.00 43.48 3.18
401 402 0.908180 CCGGTCAAGGAACCCCTACT 60.908 60.000 0.00 0.00 43.48 2.57
402 403 0.535797 CGGTCAAGGAACCCCTACTC 59.464 60.000 0.00 0.00 43.48 2.59
403 404 0.910338 GGTCAAGGAACCCCTACTCC 59.090 60.000 0.00 0.00 43.48 3.85
404 405 1.652947 GTCAAGGAACCCCTACTCCA 58.347 55.000 0.00 0.00 43.48 3.86
405 406 1.278413 GTCAAGGAACCCCTACTCCAC 59.722 57.143 0.00 0.00 43.48 4.02
406 407 0.618981 CAAGGAACCCCTACTCCACC 59.381 60.000 0.00 0.00 43.48 4.61
407 408 0.496841 AAGGAACCCCTACTCCACCT 59.503 55.000 0.00 0.00 43.48 4.00
408 409 0.042881 AGGAACCCCTACTCCACCTC 59.957 60.000 0.00 0.00 42.15 3.85
409 410 0.981801 GGAACCCCTACTCCACCTCC 60.982 65.000 0.00 0.00 0.00 4.30
410 411 1.305887 AACCCCTACTCCACCTCCG 60.306 63.158 0.00 0.00 0.00 4.63
411 412 3.155167 CCCCTACTCCACCTCCGC 61.155 72.222 0.00 0.00 0.00 5.54
412 413 3.155167 CCCTACTCCACCTCCGCC 61.155 72.222 0.00 0.00 0.00 6.13
413 414 3.528370 CCTACTCCACCTCCGCCG 61.528 72.222 0.00 0.00 0.00 6.46
414 415 4.208686 CTACTCCACCTCCGCCGC 62.209 72.222 0.00 0.00 0.00 6.53
436 437 3.935993 CAACCATGGAGGAAGACGT 57.064 52.632 21.47 0.00 41.22 4.34
437 438 1.442769 CAACCATGGAGGAAGACGTG 58.557 55.000 21.47 0.00 41.22 4.49
438 439 0.324943 AACCATGGAGGAAGACGTGG 59.675 55.000 21.47 0.00 46.73 4.94
439 440 1.983224 CCATGGAGGAAGACGTGGT 59.017 57.895 5.56 0.00 41.22 4.16
440 441 0.108138 CCATGGAGGAAGACGTGGTC 60.108 60.000 5.56 0.00 41.22 4.02
441 442 0.608130 CATGGAGGAAGACGTGGTCA 59.392 55.000 0.00 0.00 34.60 4.02
442 443 0.608640 ATGGAGGAAGACGTGGTCAC 59.391 55.000 0.00 0.00 34.60 3.67
455 456 3.626924 GTCACGACCACAGCCCCT 61.627 66.667 0.00 0.00 0.00 4.79
456 457 3.625897 TCACGACCACAGCCCCTG 61.626 66.667 0.00 0.00 37.52 4.45
459 460 4.415150 CGACCACAGCCCCTGCAT 62.415 66.667 0.00 0.00 41.13 3.96
460 461 2.439156 GACCACAGCCCCTGCATC 60.439 66.667 0.00 0.00 41.13 3.91
461 462 4.052518 ACCACAGCCCCTGCATCC 62.053 66.667 0.00 0.00 41.13 3.51
462 463 4.051167 CCACAGCCCCTGCATCCA 62.051 66.667 0.00 0.00 41.13 3.41
463 464 2.439701 CACAGCCCCTGCATCCAG 60.440 66.667 0.00 0.00 41.13 3.86
464 465 4.437587 ACAGCCCCTGCATCCAGC 62.438 66.667 0.00 0.00 45.96 4.85
476 477 3.513680 GCATCCAGCATGTTCAATGAA 57.486 42.857 0.00 0.00 44.79 2.57
477 478 3.852286 GCATCCAGCATGTTCAATGAAA 58.148 40.909 0.00 0.00 44.79 2.69
478 479 4.439057 GCATCCAGCATGTTCAATGAAAT 58.561 39.130 0.00 0.00 44.79 2.17
479 480 4.270084 GCATCCAGCATGTTCAATGAAATG 59.730 41.667 0.00 5.65 44.79 2.32
480 481 5.416083 CATCCAGCATGTTCAATGAAATGT 58.584 37.500 0.00 0.00 0.00 2.71
481 482 5.063180 TCCAGCATGTTCAATGAAATGTC 57.937 39.130 0.00 2.13 0.00 3.06
482 483 3.855379 CCAGCATGTTCAATGAAATGTCG 59.145 43.478 0.00 1.14 0.00 4.35
483 484 3.302434 CAGCATGTTCAATGAAATGTCGC 59.698 43.478 0.00 0.00 0.00 5.19
484 485 3.057386 AGCATGTTCAATGAAATGTCGCA 60.057 39.130 0.00 0.00 0.00 5.10
485 486 3.674281 GCATGTTCAATGAAATGTCGCAA 59.326 39.130 0.00 0.00 0.00 4.85
486 487 4.150274 GCATGTTCAATGAAATGTCGCAAA 59.850 37.500 0.00 0.00 0.00 3.68
487 488 5.666913 GCATGTTCAATGAAATGTCGCAAAG 60.667 40.000 0.00 0.00 0.00 2.77
488 489 4.297510 TGTTCAATGAAATGTCGCAAAGG 58.702 39.130 0.00 0.00 0.00 3.11
489 490 2.945278 TCAATGAAATGTCGCAAAGGC 58.055 42.857 0.00 0.00 0.00 4.35
490 491 2.295629 TCAATGAAATGTCGCAAAGGCA 59.704 40.909 0.00 0.00 41.24 4.75
491 492 2.642139 ATGAAATGTCGCAAAGGCAG 57.358 45.000 0.00 0.00 38.18 4.85
492 493 0.039256 TGAAATGTCGCAAAGGCAGC 60.039 50.000 0.00 0.00 38.18 5.25
493 494 0.733909 GAAATGTCGCAAAGGCAGCC 60.734 55.000 1.84 1.84 38.18 4.85
494 495 1.462731 AAATGTCGCAAAGGCAGCCA 61.463 50.000 15.80 0.00 38.18 4.75
495 496 1.252904 AATGTCGCAAAGGCAGCCAT 61.253 50.000 15.80 0.00 38.18 4.40
496 497 1.940883 ATGTCGCAAAGGCAGCCATG 61.941 55.000 15.80 13.53 38.18 3.66
497 498 2.282391 TCGCAAAGGCAGCCATGT 60.282 55.556 15.80 0.00 41.24 3.21
498 499 2.126228 CGCAAAGGCAGCCATGTG 60.126 61.111 15.80 14.92 41.24 3.21
499 500 2.628696 CGCAAAGGCAGCCATGTGA 61.629 57.895 20.72 0.00 41.24 3.58
500 501 1.080298 GCAAAGGCAGCCATGTGAC 60.080 57.895 15.80 1.47 40.72 3.67
501 502 1.588082 CAAAGGCAGCCATGTGACC 59.412 57.895 15.80 0.00 0.00 4.02
502 503 0.896940 CAAAGGCAGCCATGTGACCT 60.897 55.000 15.80 0.00 0.00 3.85
503 504 0.610232 AAAGGCAGCCATGTGACCTC 60.610 55.000 15.80 0.00 0.00 3.85
504 505 2.809861 AAGGCAGCCATGTGACCTCG 62.810 60.000 15.80 0.00 0.00 4.63
505 506 2.821366 GCAGCCATGTGACCTCGG 60.821 66.667 0.00 0.00 0.00 4.63
506 507 2.821366 CAGCCATGTGACCTCGGC 60.821 66.667 0.00 0.00 45.23 5.54
507 508 4.101448 AGCCATGTGACCTCGGCC 62.101 66.667 0.00 0.00 46.08 6.13
509 510 4.838152 CCATGTGACCTCGGCCGG 62.838 72.222 27.83 16.14 0.00 6.13
513 514 4.699522 GTGACCTCGGCCGGCTTT 62.700 66.667 28.56 7.30 0.00 3.51
514 515 2.998480 TGACCTCGGCCGGCTTTA 60.998 61.111 28.56 11.13 0.00 1.85
515 516 2.510918 GACCTCGGCCGGCTTTAC 60.511 66.667 28.56 8.59 0.00 2.01
516 517 3.305177 GACCTCGGCCGGCTTTACA 62.305 63.158 28.56 2.05 0.00 2.41
517 518 2.818274 CCTCGGCCGGCTTTACAC 60.818 66.667 28.56 7.30 0.00 2.90
518 519 2.818274 CTCGGCCGGCTTTACACC 60.818 66.667 28.56 6.45 0.00 4.16
519 520 3.310860 CTCGGCCGGCTTTACACCT 62.311 63.158 28.56 0.00 0.00 4.00
520 521 2.818274 CGGCCGGCTTTACACCTC 60.818 66.667 28.56 4.75 0.00 3.85
521 522 2.437895 GGCCGGCTTTACACCTCC 60.438 66.667 28.56 0.41 0.00 4.30
522 523 2.349755 GCCGGCTTTACACCTCCA 59.650 61.111 22.15 0.00 0.00 3.86
523 524 2.038837 GCCGGCTTTACACCTCCAC 61.039 63.158 22.15 0.00 0.00 4.02
524 525 1.677552 CCGGCTTTACACCTCCACT 59.322 57.895 0.00 0.00 0.00 4.00
525 526 0.391263 CCGGCTTTACACCTCCACTC 60.391 60.000 0.00 0.00 0.00 3.51
526 527 0.608640 CGGCTTTACACCTCCACTCT 59.391 55.000 0.00 0.00 0.00 3.24
527 528 1.673033 CGGCTTTACACCTCCACTCTG 60.673 57.143 0.00 0.00 0.00 3.35
528 529 1.443802 GCTTTACACCTCCACTCTGC 58.556 55.000 0.00 0.00 0.00 4.26
529 530 1.270839 GCTTTACACCTCCACTCTGCA 60.271 52.381 0.00 0.00 0.00 4.41
530 531 2.616510 GCTTTACACCTCCACTCTGCAT 60.617 50.000 0.00 0.00 0.00 3.96
531 532 3.265791 CTTTACACCTCCACTCTGCATC 58.734 50.000 0.00 0.00 0.00 3.91
532 533 1.937191 TACACCTCCACTCTGCATCA 58.063 50.000 0.00 0.00 0.00 3.07
533 534 1.283347 ACACCTCCACTCTGCATCAT 58.717 50.000 0.00 0.00 0.00 2.45
534 535 1.209019 ACACCTCCACTCTGCATCATC 59.791 52.381 0.00 0.00 0.00 2.92
535 536 1.485480 CACCTCCACTCTGCATCATCT 59.515 52.381 0.00 0.00 0.00 2.90
536 537 2.697229 CACCTCCACTCTGCATCATCTA 59.303 50.000 0.00 0.00 0.00 1.98
537 538 3.324268 CACCTCCACTCTGCATCATCTAT 59.676 47.826 0.00 0.00 0.00 1.98
538 539 3.972638 ACCTCCACTCTGCATCATCTATT 59.027 43.478 0.00 0.00 0.00 1.73
539 540 4.202336 ACCTCCACTCTGCATCATCTATTG 60.202 45.833 0.00 0.00 0.00 1.90
540 541 4.316645 CTCCACTCTGCATCATCTATTGG 58.683 47.826 0.00 0.00 0.00 3.16
541 542 3.969312 TCCACTCTGCATCATCTATTGGA 59.031 43.478 0.00 0.00 0.00 3.53
542 543 4.040095 TCCACTCTGCATCATCTATTGGAG 59.960 45.833 0.00 0.00 33.09 3.86
543 544 4.202336 CCACTCTGCATCATCTATTGGAGT 60.202 45.833 0.00 0.00 33.52 3.85
544 545 5.366460 CACTCTGCATCATCTATTGGAGTT 58.634 41.667 0.00 0.00 33.52 3.01
545 546 5.236695 CACTCTGCATCATCTATTGGAGTTG 59.763 44.000 0.00 0.00 33.52 3.16
546 547 4.132336 TCTGCATCATCTATTGGAGTTGC 58.868 43.478 0.00 0.00 33.52 4.17
547 548 3.881089 CTGCATCATCTATTGGAGTTGCA 59.119 43.478 0.00 0.00 36.39 4.08
548 549 4.466827 TGCATCATCTATTGGAGTTGCAT 58.533 39.130 0.00 0.00 34.43 3.96
549 550 4.891168 TGCATCATCTATTGGAGTTGCATT 59.109 37.500 0.00 0.00 34.43 3.56
550 551 5.009310 TGCATCATCTATTGGAGTTGCATTC 59.991 40.000 0.00 0.00 34.43 2.67
551 552 5.241064 GCATCATCTATTGGAGTTGCATTCT 59.759 40.000 0.00 0.00 31.58 2.40
552 553 6.238953 GCATCATCTATTGGAGTTGCATTCTT 60.239 38.462 0.00 0.00 31.58 2.52
553 554 7.040892 GCATCATCTATTGGAGTTGCATTCTTA 60.041 37.037 0.00 0.00 31.58 2.10
554 555 7.792374 TCATCTATTGGAGTTGCATTCTTAC 57.208 36.000 0.00 0.00 0.00 2.34
555 556 7.337938 TCATCTATTGGAGTTGCATTCTTACA 58.662 34.615 0.00 0.00 0.00 2.41
556 557 7.994911 TCATCTATTGGAGTTGCATTCTTACAT 59.005 33.333 0.00 0.00 0.00 2.29
557 558 7.792374 TCTATTGGAGTTGCATTCTTACATC 57.208 36.000 0.00 0.00 0.00 3.06
558 559 7.568349 TCTATTGGAGTTGCATTCTTACATCT 58.432 34.615 0.00 0.00 0.00 2.90
559 560 6.690194 ATTGGAGTTGCATTCTTACATCTC 57.310 37.500 0.00 0.00 33.68 2.75
560 561 4.517285 TGGAGTTGCATTCTTACATCTCC 58.483 43.478 11.46 11.46 46.32 3.71
561 562 4.517285 GGAGTTGCATTCTTACATCTCCA 58.483 43.478 12.89 0.00 45.81 3.86
562 563 4.943705 GGAGTTGCATTCTTACATCTCCAA 59.056 41.667 12.89 0.00 45.81 3.53
563 564 5.591877 GGAGTTGCATTCTTACATCTCCAAT 59.408 40.000 12.89 0.00 45.81 3.16
564 565 6.767902 GGAGTTGCATTCTTACATCTCCAATA 59.232 38.462 12.89 0.00 45.81 1.90
565 566 7.446625 GGAGTTGCATTCTTACATCTCCAATAT 59.553 37.037 12.89 0.00 45.81 1.28
566 567 9.494271 GAGTTGCATTCTTACATCTCCAATATA 57.506 33.333 0.00 0.00 29.98 0.86
567 568 9.277783 AGTTGCATTCTTACATCTCCAATATAC 57.722 33.333 0.00 0.00 0.00 1.47
568 569 9.056005 GTTGCATTCTTACATCTCCAATATACA 57.944 33.333 0.00 0.00 0.00 2.29
569 570 9.797642 TTGCATTCTTACATCTCCAATATACAT 57.202 29.630 0.00 0.00 0.00 2.29
570 571 9.440773 TGCATTCTTACATCTCCAATATACATC 57.559 33.333 0.00 0.00 0.00 3.06
571 572 8.598924 GCATTCTTACATCTCCAATATACATCG 58.401 37.037 0.00 0.00 0.00 3.84
572 573 9.645059 CATTCTTACATCTCCAATATACATCGT 57.355 33.333 0.00 0.00 0.00 3.73
573 574 9.862371 ATTCTTACATCTCCAATATACATCGTC 57.138 33.333 0.00 0.00 0.00 4.20
574 575 8.637196 TCTTACATCTCCAATATACATCGTCT 57.363 34.615 0.00 0.00 0.00 4.18
575 576 8.515414 TCTTACATCTCCAATATACATCGTCTG 58.485 37.037 0.00 0.00 0.00 3.51
576 577 6.656632 ACATCTCCAATATACATCGTCTGT 57.343 37.500 0.00 0.00 42.13 3.41
577 578 7.055667 ACATCTCCAATATACATCGTCTGTT 57.944 36.000 0.00 0.00 39.39 3.16
578 579 6.925718 ACATCTCCAATATACATCGTCTGTTG 59.074 38.462 0.00 0.00 39.39 3.33
579 580 6.709018 TCTCCAATATACATCGTCTGTTGA 57.291 37.500 0.00 0.00 39.39 3.18
580 581 7.107639 TCTCCAATATACATCGTCTGTTGAA 57.892 36.000 0.00 0.00 39.39 2.69
581 582 7.203218 TCTCCAATATACATCGTCTGTTGAAG 58.797 38.462 0.00 0.00 39.39 3.02
582 583 6.873997 TCCAATATACATCGTCTGTTGAAGT 58.126 36.000 0.00 0.00 39.39 3.01
583 584 7.327975 TCCAATATACATCGTCTGTTGAAGTT 58.672 34.615 0.00 0.00 39.39 2.66
584 585 7.277760 TCCAATATACATCGTCTGTTGAAGTTG 59.722 37.037 0.00 0.00 39.39 3.16
585 586 4.928661 ATACATCGTCTGTTGAAGTTGC 57.071 40.909 0.00 0.00 39.39 4.17
586 587 1.873591 ACATCGTCTGTTGAAGTTGCC 59.126 47.619 0.00 0.00 32.90 4.52
587 588 2.146342 CATCGTCTGTTGAAGTTGCCT 58.854 47.619 0.00 0.00 0.00 4.75
588 589 3.244078 ACATCGTCTGTTGAAGTTGCCTA 60.244 43.478 0.00 0.00 32.90 3.93
589 590 3.678056 TCGTCTGTTGAAGTTGCCTAT 57.322 42.857 0.00 0.00 0.00 2.57
590 591 4.002906 TCGTCTGTTGAAGTTGCCTATT 57.997 40.909 0.00 0.00 0.00 1.73
591 592 4.385825 TCGTCTGTTGAAGTTGCCTATTT 58.614 39.130 0.00 0.00 0.00 1.40
592 593 4.819630 TCGTCTGTTGAAGTTGCCTATTTT 59.180 37.500 0.00 0.00 0.00 1.82
593 594 5.992829 TCGTCTGTTGAAGTTGCCTATTTTA 59.007 36.000 0.00 0.00 0.00 1.52
594 595 6.073440 TCGTCTGTTGAAGTTGCCTATTTTAC 60.073 38.462 0.00 0.00 0.00 2.01
595 596 6.077838 GTCTGTTGAAGTTGCCTATTTTACG 58.922 40.000 0.00 0.00 0.00 3.18
596 597 5.992829 TCTGTTGAAGTTGCCTATTTTACGA 59.007 36.000 0.00 0.00 0.00 3.43
597 598 6.483974 TCTGTTGAAGTTGCCTATTTTACGAA 59.516 34.615 0.00 0.00 0.00 3.85
598 599 6.664515 TGTTGAAGTTGCCTATTTTACGAAG 58.335 36.000 0.00 0.00 0.00 3.79
599 600 5.873179 TGAAGTTGCCTATTTTACGAAGG 57.127 39.130 0.00 0.00 0.00 3.46
600 601 5.310451 TGAAGTTGCCTATTTTACGAAGGT 58.690 37.500 0.00 0.00 32.67 3.50
601 602 5.180492 TGAAGTTGCCTATTTTACGAAGGTG 59.820 40.000 0.00 0.00 32.67 4.00
602 603 4.648651 AGTTGCCTATTTTACGAAGGTGT 58.351 39.130 0.00 0.00 32.67 4.16
603 604 5.797051 AGTTGCCTATTTTACGAAGGTGTA 58.203 37.500 0.00 0.00 32.67 2.90
604 605 6.232692 AGTTGCCTATTTTACGAAGGTGTAA 58.767 36.000 0.00 0.00 32.67 2.41
605 606 6.711645 AGTTGCCTATTTTACGAAGGTGTAAA 59.288 34.615 0.00 0.00 41.28 2.01
614 615 8.649973 TTTTACGAAGGTGTAAAATGCATTTT 57.350 26.923 33.26 33.26 44.85 1.82
615 616 8.649973 TTTACGAAGGTGTAAAATGCATTTTT 57.350 26.923 35.18 20.41 40.37 1.94
762 764 0.515564 CTCAAAACTTACCGCGTGGG 59.484 55.000 21.14 6.53 40.75 4.61
763 765 0.106335 TCAAAACTTACCGCGTGGGA 59.894 50.000 21.14 8.31 40.75 4.37
764 766 1.161843 CAAAACTTACCGCGTGGGAT 58.838 50.000 21.14 0.90 40.75 3.85
765 767 1.129811 CAAAACTTACCGCGTGGGATC 59.870 52.381 21.14 0.00 40.75 3.36
766 768 0.392060 AAACTTACCGCGTGGGATCC 60.392 55.000 21.14 1.92 40.75 3.36
767 769 2.108362 CTTACCGCGTGGGATCCC 59.892 66.667 25.22 25.22 40.75 3.85
768 770 2.684294 TTACCGCGTGGGATCCCA 60.684 61.111 30.62 30.62 45.02 4.37
907 926 3.069980 GCCGTGCGAGATCTGAGGT 62.070 63.158 0.00 0.00 0.00 3.85
1290 1325 1.326548 GTACAACCGATTAAGCCGCAG 59.673 52.381 0.00 0.00 0.00 5.18
1330 1365 5.858581 GCATTTCGTAAATCATATTGCCTCC 59.141 40.000 0.00 0.00 0.00 4.30
1359 1394 5.563867 GCTCGGAACCATCAGATTCTAGTAG 60.564 48.000 0.00 0.00 0.00 2.57
1360 1395 5.446860 TCGGAACCATCAGATTCTAGTAGT 58.553 41.667 0.00 0.00 0.00 2.73
1401 1436 3.190118 ACTGCTGAATTTGCTAGTTCTGC 59.810 43.478 21.14 21.14 44.51 4.26
1415 1450 4.957684 AGTTCTGCAGTGGTACTACTTT 57.042 40.909 14.67 0.00 0.00 2.66
1498 1536 4.611581 GCGTCTGAATGTCCTGAACTTTTC 60.612 45.833 0.00 0.00 0.00 2.29
1768 1806 2.910360 CGATCAGGGACATGGCCA 59.090 61.111 22.13 8.56 0.00 5.36
1797 1835 1.548357 ATCAGGCTCAGCAGTTCCGT 61.548 55.000 0.00 0.00 0.00 4.69
1905 1943 0.466922 AGTATGGCCAGATTGCTGCC 60.467 55.000 13.05 0.00 40.91 4.85
2061 2099 7.782049 TCTATCACTATTGTGTTTTCTCGGAT 58.218 34.615 7.18 0.00 44.14 4.18
2070 2108 7.447374 TTGTGTTTTCTCGGATAACATCATT 57.553 32.000 11.03 0.00 36.33 2.57
2133 2171 5.357742 AGCACCCTGAAAAGATTGTTTTT 57.642 34.783 0.00 0.00 33.19 1.94
2175 2213 3.718434 TCAACTATGATCCAATGAGGGCT 59.282 43.478 0.00 0.00 38.24 5.19
2397 2435 3.655777 ACCTGAGGTTTTACATCCCAGAA 59.344 43.478 0.00 0.00 27.29 3.02
2403 2441 8.893563 TGAGGTTTTACATCCCAGAAATTTAT 57.106 30.769 0.00 0.00 0.00 1.40
2424 2462 0.664761 CAGAACTGCACAAGGTGGTG 59.335 55.000 0.00 0.00 41.72 4.17
2595 2633 2.691526 TGCTCATTTTGATCCTGATGCC 59.308 45.455 0.00 0.00 0.00 4.40
2916 2954 3.600388 CTTCTGGGACAACTATGTGGAC 58.400 50.000 0.00 0.00 40.74 4.02
3030 3068 1.167851 TGCATAGCTTGAACAGGCAC 58.832 50.000 11.14 0.00 35.69 5.01
3123 3161 3.689161 TGTTTATGCTGGCATGTGTAGTC 59.311 43.478 17.09 3.17 37.82 2.59
3145 3183 4.753610 TCGATAAGGTACATCGACTACAGG 59.246 45.833 11.50 0.00 46.80 4.00
3563 3605 4.122046 GCCTGCTGTGAGAAAATTGTTTT 58.878 39.130 0.00 0.00 35.12 2.43
3620 3662 2.030371 TGCTTGGCAAACATGTCTTCA 58.970 42.857 0.00 0.00 34.76 3.02
3916 3959 3.564053 TTCAGCATATGCCAGTGATCA 57.436 42.857 23.96 5.05 43.38 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 8.383947 GGGGCCTTGAAGATATATAAGTTAGTT 58.616 37.037 0.84 0.00 0.00 2.24
7 8 7.516209 TGGGGCCTTGAAGATATATAAGTTAGT 59.484 37.037 0.84 0.00 0.00 2.24
8 9 7.918076 TGGGGCCTTGAAGATATATAAGTTAG 58.082 38.462 0.84 0.00 0.00 2.34
9 10 7.881912 TGGGGCCTTGAAGATATATAAGTTA 57.118 36.000 0.84 0.00 0.00 2.24
10 11 6.780198 TGGGGCCTTGAAGATATATAAGTT 57.220 37.500 0.84 0.00 0.00 2.66
11 12 6.977244 ATGGGGCCTTGAAGATATATAAGT 57.023 37.500 0.84 0.00 0.00 2.24
12 13 9.927081 AATAATGGGGCCTTGAAGATATATAAG 57.073 33.333 0.84 0.00 0.00 1.73
15 16 9.039165 CAAAATAATGGGGCCTTGAAGATATAT 57.961 33.333 0.84 0.00 0.00 0.86
16 17 8.010105 ACAAAATAATGGGGCCTTGAAGATATA 58.990 33.333 0.84 0.00 0.00 0.86
17 18 6.845975 ACAAAATAATGGGGCCTTGAAGATAT 59.154 34.615 0.84 0.00 0.00 1.63
18 19 6.201591 ACAAAATAATGGGGCCTTGAAGATA 58.798 36.000 0.84 0.00 0.00 1.98
19 20 5.032170 ACAAAATAATGGGGCCTTGAAGAT 58.968 37.500 0.84 0.00 0.00 2.40
20 21 4.424842 ACAAAATAATGGGGCCTTGAAGA 58.575 39.130 0.84 0.00 0.00 2.87
21 22 4.467438 AGACAAAATAATGGGGCCTTGAAG 59.533 41.667 0.84 0.00 0.00 3.02
22 23 4.424842 AGACAAAATAATGGGGCCTTGAA 58.575 39.130 0.84 0.00 0.00 2.69
23 24 4.059773 AGACAAAATAATGGGGCCTTGA 57.940 40.909 0.84 0.00 0.00 3.02
24 25 4.824479 AAGACAAAATAATGGGGCCTTG 57.176 40.909 0.84 0.00 0.00 3.61
25 26 4.225042 GGAAAGACAAAATAATGGGGCCTT 59.775 41.667 0.84 0.00 0.00 4.35
26 27 3.774766 GGAAAGACAAAATAATGGGGCCT 59.225 43.478 0.84 0.00 0.00 5.19
27 28 3.430236 CGGAAAGACAAAATAATGGGGCC 60.430 47.826 0.00 0.00 0.00 5.80
28 29 3.780902 CGGAAAGACAAAATAATGGGGC 58.219 45.455 0.00 0.00 0.00 5.80
29 30 3.430236 GGCGGAAAGACAAAATAATGGGG 60.430 47.826 0.00 0.00 0.00 4.96
30 31 3.447229 AGGCGGAAAGACAAAATAATGGG 59.553 43.478 0.00 0.00 0.00 4.00
31 32 4.423732 CAGGCGGAAAGACAAAATAATGG 58.576 43.478 0.00 0.00 0.00 3.16
32 33 3.859386 GCAGGCGGAAAGACAAAATAATG 59.141 43.478 0.00 0.00 0.00 1.90
33 34 3.119137 GGCAGGCGGAAAGACAAAATAAT 60.119 43.478 0.00 0.00 0.00 1.28
34 35 2.230266 GGCAGGCGGAAAGACAAAATAA 59.770 45.455 0.00 0.00 0.00 1.40
35 36 1.816224 GGCAGGCGGAAAGACAAAATA 59.184 47.619 0.00 0.00 0.00 1.40
36 37 0.603065 GGCAGGCGGAAAGACAAAAT 59.397 50.000 0.00 0.00 0.00 1.82
37 38 1.791103 CGGCAGGCGGAAAGACAAAA 61.791 55.000 8.89 0.00 0.00 2.44
38 39 2.258013 CGGCAGGCGGAAAGACAAA 61.258 57.895 8.89 0.00 0.00 2.83
39 40 2.668212 CGGCAGGCGGAAAGACAA 60.668 61.111 8.89 0.00 0.00 3.18
76 77 2.027751 GTCGGAGTCGGCTATGGC 59.972 66.667 0.00 0.00 38.10 4.40
77 78 2.331805 CGTCGGAGTCGGCTATGG 59.668 66.667 0.00 0.00 39.11 2.74
78 79 2.353607 GCGTCGGAGTCGGCTATG 60.354 66.667 0.00 0.00 39.83 2.23
96 97 3.866582 GAGGATGAGGCGGTGGGG 61.867 72.222 0.00 0.00 0.00 4.96
97 98 3.866582 GGAGGATGAGGCGGTGGG 61.867 72.222 0.00 0.00 0.00 4.61
98 99 4.227134 CGGAGGATGAGGCGGTGG 62.227 72.222 0.00 0.00 0.00 4.61
99 100 2.076622 CTACGGAGGATGAGGCGGTG 62.077 65.000 0.00 0.00 0.00 4.94
100 101 1.828660 CTACGGAGGATGAGGCGGT 60.829 63.158 0.00 0.00 0.00 5.68
101 102 3.043419 CTACGGAGGATGAGGCGG 58.957 66.667 0.00 0.00 0.00 6.13
102 103 2.336809 GCTACGGAGGATGAGGCG 59.663 66.667 0.00 0.00 0.00 5.52
103 104 2.737830 GGCTACGGAGGATGAGGC 59.262 66.667 0.00 0.00 0.00 4.70
104 105 3.043419 CGGCTACGGAGGATGAGG 58.957 66.667 0.00 0.00 36.18 3.86
105 106 2.336809 GCGGCTACGGAGGATGAG 59.663 66.667 0.00 0.00 41.36 2.90
106 107 3.224324 GGCGGCTACGGAGGATGA 61.224 66.667 0.00 0.00 41.36 2.92
107 108 4.301027 GGGCGGCTACGGAGGATG 62.301 72.222 9.56 0.00 41.36 3.51
108 109 4.853142 TGGGCGGCTACGGAGGAT 62.853 66.667 9.56 0.00 41.36 3.24
123 124 1.656818 CTAAGGTTGCGGCATGGTGG 61.657 60.000 2.28 0.00 0.00 4.61
124 125 1.802636 CTAAGGTTGCGGCATGGTG 59.197 57.895 2.28 0.00 0.00 4.17
125 126 2.046285 GCTAAGGTTGCGGCATGGT 61.046 57.895 2.28 0.00 0.00 3.55
126 127 2.774799 GGCTAAGGTTGCGGCATGG 61.775 63.158 2.28 0.00 0.00 3.66
127 128 1.996786 CTGGCTAAGGTTGCGGCATG 61.997 60.000 2.28 0.00 32.60 4.06
128 129 1.750399 CTGGCTAAGGTTGCGGCAT 60.750 57.895 2.28 0.00 32.60 4.40
129 130 2.359850 CTGGCTAAGGTTGCGGCA 60.360 61.111 0.00 0.00 0.00 5.69
130 131 3.815396 GCTGGCTAAGGTTGCGGC 61.815 66.667 0.00 0.00 0.00 6.53
131 132 3.499737 CGCTGGCTAAGGTTGCGG 61.500 66.667 0.00 0.00 42.46 5.69
133 134 4.166011 CGCGCTGGCTAAGGTTGC 62.166 66.667 5.56 0.00 36.88 4.17
134 135 2.434185 TCGCGCTGGCTAAGGTTG 60.434 61.111 5.56 0.00 36.88 3.77
135 136 2.434359 GTCGCGCTGGCTAAGGTT 60.434 61.111 5.56 0.00 36.88 3.50
136 137 4.452733 GGTCGCGCTGGCTAAGGT 62.453 66.667 5.56 0.00 36.88 3.50
137 138 4.451150 TGGTCGCGCTGGCTAAGG 62.451 66.667 5.56 0.00 36.88 2.69
138 139 3.188786 GTGGTCGCGCTGGCTAAG 61.189 66.667 5.56 0.00 36.88 2.18
139 140 4.752879 GGTGGTCGCGCTGGCTAA 62.753 66.667 5.56 0.00 36.88 3.09
149 150 2.125269 GATTGGGGACGGTGGTCG 60.125 66.667 0.00 0.00 44.39 4.79
150 151 2.271173 GGATTGGGGACGGTGGTC 59.729 66.667 0.00 0.00 42.66 4.02
151 152 3.335729 GGGATTGGGGACGGTGGT 61.336 66.667 0.00 0.00 0.00 4.16
152 153 4.483243 CGGGATTGGGGACGGTGG 62.483 72.222 0.00 0.00 0.00 4.61
156 157 4.547367 GAGGCGGGATTGGGGACG 62.547 72.222 0.00 0.00 0.00 4.79
157 158 4.191015 GGAGGCGGGATTGGGGAC 62.191 72.222 0.00 0.00 0.00 4.46
160 161 4.547367 GACGGAGGCGGGATTGGG 62.547 72.222 0.00 0.00 0.00 4.12
161 162 3.447025 GAGACGGAGGCGGGATTGG 62.447 68.421 0.00 0.00 0.00 3.16
162 163 2.107141 GAGACGGAGGCGGGATTG 59.893 66.667 0.00 0.00 0.00 2.67
163 164 3.155167 GGAGACGGAGGCGGGATT 61.155 66.667 0.00 0.00 0.00 3.01
164 165 3.758133 ATGGAGACGGAGGCGGGAT 62.758 63.158 0.00 0.00 0.00 3.85
165 166 4.458829 ATGGAGACGGAGGCGGGA 62.459 66.667 0.00 0.00 0.00 5.14
166 167 4.227134 CATGGAGACGGAGGCGGG 62.227 72.222 0.00 0.00 0.00 6.13
167 168 4.899239 GCATGGAGACGGAGGCGG 62.899 72.222 0.00 0.00 0.00 6.13
168 169 4.899239 GGCATGGAGACGGAGGCG 62.899 72.222 0.00 0.00 0.00 5.52
206 207 4.008933 GATGATCGGCCGGGGAGG 62.009 72.222 27.83 0.00 44.97 4.30
207 208 4.363990 CGATGATCGGCCGGGGAG 62.364 72.222 27.83 8.59 36.00 4.30
209 210 4.235762 AACGATGATCGGCCGGGG 62.236 66.667 27.83 10.67 45.59 5.73
210 211 2.967076 CAACGATGATCGGCCGGG 60.967 66.667 27.83 10.30 45.59 5.73
211 212 3.640000 GCAACGATGATCGGCCGG 61.640 66.667 27.83 10.66 45.59 6.13
212 213 3.988385 CGCAACGATGATCGGCCG 61.988 66.667 22.12 22.12 45.59 6.13
213 214 2.584970 TCGCAACGATGATCGGCC 60.585 61.111 19.82 5.75 45.59 6.13
214 215 2.621000 GTCGCAACGATGATCGGC 59.379 61.111 19.82 12.45 45.59 5.54
228 229 2.720758 CTTCTTCAGTGGCGCGTCG 61.721 63.158 6.09 0.00 0.00 5.12
229 230 1.664965 ACTTCTTCAGTGGCGCGTC 60.665 57.895 2.29 2.29 32.83 5.19
230 231 2.421739 ACTTCTTCAGTGGCGCGT 59.578 55.556 8.43 0.00 32.83 6.01
237 238 1.352622 TGGTGGCCCACTTCTTCAGT 61.353 55.000 14.71 0.00 35.17 3.41
238 239 0.178992 TTGGTGGCCCACTTCTTCAG 60.179 55.000 14.71 0.00 41.67 3.02
239 240 0.482446 ATTGGTGGCCCACTTCTTCA 59.518 50.000 14.71 0.00 41.67 3.02
240 241 1.177401 GATTGGTGGCCCACTTCTTC 58.823 55.000 14.71 2.59 41.67 2.87
241 242 0.251787 GGATTGGTGGCCCACTTCTT 60.252 55.000 14.71 0.00 41.67 2.52
242 243 1.384191 GGATTGGTGGCCCACTTCT 59.616 57.895 14.71 0.00 41.67 2.85
243 244 1.682344 GGGATTGGTGGCCCACTTC 60.682 63.158 14.71 8.48 44.07 3.01
244 245 2.445155 GGGATTGGTGGCCCACTT 59.555 61.111 14.71 0.00 44.07 3.16
261 262 1.669115 CTTCACACCTCCACCGCAG 60.669 63.158 0.00 0.00 0.00 5.18
262 263 2.425592 CTTCACACCTCCACCGCA 59.574 61.111 0.00 0.00 0.00 5.69
263 264 3.050275 GCTTCACACCTCCACCGC 61.050 66.667 0.00 0.00 0.00 5.68
264 265 2.738521 CGCTTCACACCTCCACCG 60.739 66.667 0.00 0.00 0.00 4.94
265 266 2.358737 CCGCTTCACACCTCCACC 60.359 66.667 0.00 0.00 0.00 4.61
266 267 3.050275 GCCGCTTCACACCTCCAC 61.050 66.667 0.00 0.00 0.00 4.02
267 268 4.329545 GGCCGCTTCACACCTCCA 62.330 66.667 0.00 0.00 0.00 3.86
269 270 4.373116 TCGGCCGCTTCACACCTC 62.373 66.667 23.51 0.00 0.00 3.85
270 271 4.681978 GTCGGCCGCTTCACACCT 62.682 66.667 23.51 0.00 0.00 4.00
309 310 0.893270 TGTTTTGCCACCCGAGATGG 60.893 55.000 0.00 0.00 40.50 3.51
310 311 0.958091 TTGTTTTGCCACCCGAGATG 59.042 50.000 0.00 0.00 0.00 2.90
311 312 1.818674 GATTGTTTTGCCACCCGAGAT 59.181 47.619 0.00 0.00 0.00 2.75
312 313 1.243902 GATTGTTTTGCCACCCGAGA 58.756 50.000 0.00 0.00 0.00 4.04
313 314 0.958091 TGATTGTTTTGCCACCCGAG 59.042 50.000 0.00 0.00 0.00 4.63
314 315 1.403814 TTGATTGTTTTGCCACCCGA 58.596 45.000 0.00 0.00 0.00 5.14
315 316 2.134346 CTTTGATTGTTTTGCCACCCG 58.866 47.619 0.00 0.00 0.00 5.28
316 317 2.493035 CCTTTGATTGTTTTGCCACCC 58.507 47.619 0.00 0.00 0.00 4.61
317 318 1.872952 GCCTTTGATTGTTTTGCCACC 59.127 47.619 0.00 0.00 0.00 4.61
318 319 1.526464 CGCCTTTGATTGTTTTGCCAC 59.474 47.619 0.00 0.00 0.00 5.01
319 320 1.539929 CCGCCTTTGATTGTTTTGCCA 60.540 47.619 0.00 0.00 0.00 4.92
320 321 1.147473 CCGCCTTTGATTGTTTTGCC 58.853 50.000 0.00 0.00 0.00 4.52
321 322 1.792367 GTCCGCCTTTGATTGTTTTGC 59.208 47.619 0.00 0.00 0.00 3.68
322 323 2.050691 CGTCCGCCTTTGATTGTTTTG 58.949 47.619 0.00 0.00 0.00 2.44
323 324 1.601914 GCGTCCGCCTTTGATTGTTTT 60.602 47.619 0.00 0.00 34.56 2.43
324 325 0.039527 GCGTCCGCCTTTGATTGTTT 60.040 50.000 0.00 0.00 34.56 2.83
325 326 1.579429 GCGTCCGCCTTTGATTGTT 59.421 52.632 0.00 0.00 34.56 2.83
326 327 2.677003 CGCGTCCGCCTTTGATTGT 61.677 57.895 6.04 0.00 37.98 2.71
327 328 2.098298 CGCGTCCGCCTTTGATTG 59.902 61.111 6.04 0.00 37.98 2.67
328 329 3.124921 CCGCGTCCGCCTTTGATT 61.125 61.111 4.92 0.00 37.98 2.57
344 345 3.395687 GAATCGATCGACGCGCCC 61.396 66.667 22.06 2.37 42.26 6.13
353 354 1.004277 CCGGCAGTAGCGAATCGATC 61.004 60.000 6.91 0.00 43.41 3.69
354 355 1.007271 CCGGCAGTAGCGAATCGAT 60.007 57.895 6.91 1.41 43.41 3.59
355 356 2.411701 CCGGCAGTAGCGAATCGA 59.588 61.111 6.91 0.00 43.41 3.59
356 357 3.330853 GCCGGCAGTAGCGAATCG 61.331 66.667 24.80 0.00 43.41 3.34
373 374 2.885644 CTTGACCGGATGCGGACG 60.886 66.667 33.63 10.63 0.00 4.79
374 375 2.511600 CCTTGACCGGATGCGGAC 60.512 66.667 33.63 26.53 0.00 4.79
375 376 2.287274 TTCCTTGACCGGATGCGGA 61.287 57.895 33.63 8.00 32.02 5.54
376 377 2.106683 GTTCCTTGACCGGATGCGG 61.107 63.158 25.41 25.41 32.02 5.69
377 378 2.106683 GGTTCCTTGACCGGATGCG 61.107 63.158 9.46 0.00 32.02 4.73
378 379 1.749258 GGGTTCCTTGACCGGATGC 60.749 63.158 9.46 0.00 40.75 3.91
379 380 1.077716 GGGGTTCCTTGACCGGATG 60.078 63.158 9.46 0.00 40.75 3.51
380 381 0.043637 TAGGGGTTCCTTGACCGGAT 59.956 55.000 9.46 0.00 41.56 4.18
381 382 0.906282 GTAGGGGTTCCTTGACCGGA 60.906 60.000 9.46 0.00 41.56 5.14
382 383 0.908180 AGTAGGGGTTCCTTGACCGG 60.908 60.000 0.00 0.00 41.56 5.28
383 384 0.535797 GAGTAGGGGTTCCTTGACCG 59.464 60.000 0.00 0.00 41.56 4.79
384 385 0.910338 GGAGTAGGGGTTCCTTGACC 59.090 60.000 0.00 0.00 41.56 4.02
385 386 1.278413 GTGGAGTAGGGGTTCCTTGAC 59.722 57.143 0.00 0.00 41.56 3.18
386 387 1.652947 GTGGAGTAGGGGTTCCTTGA 58.347 55.000 0.00 0.00 41.56 3.02
387 388 0.618981 GGTGGAGTAGGGGTTCCTTG 59.381 60.000 0.00 0.00 41.56 3.61
388 389 0.496841 AGGTGGAGTAGGGGTTCCTT 59.503 55.000 0.00 0.00 41.56 3.36
389 390 0.042881 GAGGTGGAGTAGGGGTTCCT 59.957 60.000 0.00 0.00 46.96 3.36
390 391 0.981801 GGAGGTGGAGTAGGGGTTCC 60.982 65.000 0.00 0.00 0.00 3.62
391 392 1.328430 CGGAGGTGGAGTAGGGGTTC 61.328 65.000 0.00 0.00 0.00 3.62
392 393 1.305887 CGGAGGTGGAGTAGGGGTT 60.306 63.158 0.00 0.00 0.00 4.11
393 394 2.363361 CGGAGGTGGAGTAGGGGT 59.637 66.667 0.00 0.00 0.00 4.95
394 395 3.155167 GCGGAGGTGGAGTAGGGG 61.155 72.222 0.00 0.00 0.00 4.79
395 396 3.155167 GGCGGAGGTGGAGTAGGG 61.155 72.222 0.00 0.00 0.00 3.53
396 397 3.528370 CGGCGGAGGTGGAGTAGG 61.528 72.222 0.00 0.00 0.00 3.18
397 398 4.208686 GCGGCGGAGGTGGAGTAG 62.209 72.222 9.78 0.00 0.00 2.57
413 414 3.936772 TTCCTCCATGGTTGGCGGC 62.937 63.158 12.58 0.00 45.97 6.53
415 416 1.026718 GTCTTCCTCCATGGTTGGCG 61.027 60.000 12.58 9.74 43.29 5.69
416 417 1.026718 CGTCTTCCTCCATGGTTGGC 61.027 60.000 12.58 2.31 43.29 4.52
417 418 0.324943 ACGTCTTCCTCCATGGTTGG 59.675 55.000 12.58 15.19 45.15 3.77
418 419 1.442769 CACGTCTTCCTCCATGGTTG 58.557 55.000 12.58 6.09 37.07 3.77
419 420 0.324943 CCACGTCTTCCTCCATGGTT 59.675 55.000 12.58 0.00 37.07 3.67
420 421 0.836400 ACCACGTCTTCCTCCATGGT 60.836 55.000 12.58 0.00 35.60 3.55
421 422 0.108138 GACCACGTCTTCCTCCATGG 60.108 60.000 4.97 4.97 37.10 3.66
422 423 0.608130 TGACCACGTCTTCCTCCATG 59.392 55.000 0.00 0.00 33.15 3.66
423 424 0.608640 GTGACCACGTCTTCCTCCAT 59.391 55.000 0.00 0.00 33.15 3.41
424 425 2.046938 GTGACCACGTCTTCCTCCA 58.953 57.895 0.00 0.00 33.15 3.86
425 426 4.990288 GTGACCACGTCTTCCTCC 57.010 61.111 0.00 0.00 33.15 4.30
438 439 3.626924 AGGGGCTGTGGTCGTGAC 61.627 66.667 0.00 0.00 0.00 3.67
439 440 3.625897 CAGGGGCTGTGGTCGTGA 61.626 66.667 0.00 0.00 0.00 4.35
442 443 4.415150 ATGCAGGGGCTGTGGTCG 62.415 66.667 0.00 0.00 41.91 4.79
443 444 2.439156 GATGCAGGGGCTGTGGTC 60.439 66.667 0.00 0.00 41.91 4.02
444 445 4.052518 GGATGCAGGGGCTGTGGT 62.053 66.667 0.00 0.00 41.91 4.16
445 446 4.051167 TGGATGCAGGGGCTGTGG 62.051 66.667 0.00 0.00 41.91 4.17
446 447 2.439701 CTGGATGCAGGGGCTGTG 60.440 66.667 6.28 0.00 41.91 3.66
447 448 4.437587 GCTGGATGCAGGGGCTGT 62.438 66.667 16.65 0.00 42.31 4.40
456 457 3.513680 TTCATTGAACATGCTGGATGC 57.486 42.857 9.21 0.00 43.25 3.91
457 458 5.416083 ACATTTCATTGAACATGCTGGATG 58.584 37.500 7.67 7.67 38.15 3.51
458 459 5.657474 GACATTTCATTGAACATGCTGGAT 58.343 37.500 15.45 0.00 0.00 3.41
459 460 4.379708 CGACATTTCATTGAACATGCTGGA 60.380 41.667 15.45 0.00 0.00 3.86
460 461 3.855379 CGACATTTCATTGAACATGCTGG 59.145 43.478 15.45 6.89 0.00 4.85
461 462 3.302434 GCGACATTTCATTGAACATGCTG 59.698 43.478 15.45 11.51 0.00 4.41
462 463 3.057386 TGCGACATTTCATTGAACATGCT 60.057 39.130 15.45 0.00 0.00 3.79
463 464 3.244156 TGCGACATTTCATTGAACATGC 58.756 40.909 15.45 9.69 0.00 4.06
464 465 5.164031 CCTTTGCGACATTTCATTGAACATG 60.164 40.000 14.58 14.58 0.00 3.21
465 466 4.925054 CCTTTGCGACATTTCATTGAACAT 59.075 37.500 0.00 0.00 0.00 2.71
466 467 4.297510 CCTTTGCGACATTTCATTGAACA 58.702 39.130 0.00 0.00 0.00 3.18
467 468 3.121778 GCCTTTGCGACATTTCATTGAAC 59.878 43.478 0.00 0.00 0.00 3.18
468 469 3.243670 TGCCTTTGCGACATTTCATTGAA 60.244 39.130 0.00 0.00 41.78 2.69
469 470 2.295629 TGCCTTTGCGACATTTCATTGA 59.704 40.909 0.00 0.00 41.78 2.57
470 471 2.664568 CTGCCTTTGCGACATTTCATTG 59.335 45.455 0.00 0.00 41.78 2.82
471 472 2.927871 GCTGCCTTTGCGACATTTCATT 60.928 45.455 0.00 0.00 41.78 2.57
472 473 1.403249 GCTGCCTTTGCGACATTTCAT 60.403 47.619 0.00 0.00 41.78 2.57
473 474 0.039256 GCTGCCTTTGCGACATTTCA 60.039 50.000 0.00 0.00 41.78 2.69
474 475 0.733909 GGCTGCCTTTGCGACATTTC 60.734 55.000 12.43 0.00 41.78 2.17
475 476 1.290009 GGCTGCCTTTGCGACATTT 59.710 52.632 12.43 0.00 41.78 2.32
476 477 1.252904 ATGGCTGCCTTTGCGACATT 61.253 50.000 21.03 0.00 36.70 2.71
477 478 1.679977 ATGGCTGCCTTTGCGACAT 60.680 52.632 21.03 0.00 41.78 3.06
478 479 2.282391 ATGGCTGCCTTTGCGACA 60.282 55.556 21.03 0.00 41.78 4.35
479 480 2.180017 CATGGCTGCCTTTGCGAC 59.820 61.111 21.03 0.00 41.78 5.19
480 481 2.282391 ACATGGCTGCCTTTGCGA 60.282 55.556 21.03 0.00 41.78 5.10
481 482 2.126228 CACATGGCTGCCTTTGCG 60.126 61.111 21.03 7.93 41.78 4.85
482 483 1.080298 GTCACATGGCTGCCTTTGC 60.080 57.895 21.03 6.79 38.26 3.68
483 484 0.896940 AGGTCACATGGCTGCCTTTG 60.897 55.000 21.03 18.70 0.00 2.77
484 485 0.610232 GAGGTCACATGGCTGCCTTT 60.610 55.000 21.03 4.44 0.00 3.11
485 486 1.001641 GAGGTCACATGGCTGCCTT 60.002 57.895 21.03 11.16 0.00 4.35
486 487 2.673523 GAGGTCACATGGCTGCCT 59.326 61.111 21.03 2.27 0.00 4.75
487 488 2.821366 CGAGGTCACATGGCTGCC 60.821 66.667 12.87 12.87 0.00 4.85
488 489 2.821366 CCGAGGTCACATGGCTGC 60.821 66.667 0.00 0.00 0.00 5.25
489 490 2.821366 GCCGAGGTCACATGGCTG 60.821 66.667 0.00 0.00 44.16 4.85
490 491 4.101448 GGCCGAGGTCACATGGCT 62.101 66.667 0.00 0.00 46.72 4.75
492 493 4.838152 CCGGCCGAGGTCACATGG 62.838 72.222 30.73 0.44 0.00 3.66
496 497 3.305177 TAAAGCCGGCCGAGGTCAC 62.305 63.158 30.73 8.46 0.00 3.67
497 498 2.998480 TAAAGCCGGCCGAGGTCA 60.998 61.111 30.73 10.95 0.00 4.02
498 499 2.510918 GTAAAGCCGGCCGAGGTC 60.511 66.667 30.73 12.69 0.00 3.85
499 500 3.315949 TGTAAAGCCGGCCGAGGT 61.316 61.111 30.73 19.79 0.00 3.85
500 501 2.818274 GTGTAAAGCCGGCCGAGG 60.818 66.667 30.73 12.70 0.00 4.63
501 502 2.818274 GGTGTAAAGCCGGCCGAG 60.818 66.667 30.73 18.40 0.00 4.63
502 503 3.305177 GAGGTGTAAAGCCGGCCGA 62.305 63.158 30.73 5.43 0.00 5.54
503 504 2.818274 GAGGTGTAAAGCCGGCCG 60.818 66.667 26.15 21.04 0.00 6.13
504 505 2.437895 GGAGGTGTAAAGCCGGCC 60.438 66.667 26.15 8.39 0.00 6.13
505 506 2.038837 GTGGAGGTGTAAAGCCGGC 61.039 63.158 21.89 21.89 0.00 6.13
506 507 0.391263 GAGTGGAGGTGTAAAGCCGG 60.391 60.000 0.00 0.00 0.00 6.13
507 508 0.608640 AGAGTGGAGGTGTAAAGCCG 59.391 55.000 0.00 0.00 0.00 5.52
508 509 1.946283 GCAGAGTGGAGGTGTAAAGCC 60.946 57.143 0.00 0.00 0.00 4.35
509 510 1.270839 TGCAGAGTGGAGGTGTAAAGC 60.271 52.381 0.00 0.00 0.00 3.51
510 511 2.839486 TGCAGAGTGGAGGTGTAAAG 57.161 50.000 0.00 0.00 0.00 1.85
511 512 2.637382 TGATGCAGAGTGGAGGTGTAAA 59.363 45.455 0.00 0.00 0.00 2.01
512 513 2.256306 TGATGCAGAGTGGAGGTGTAA 58.744 47.619 0.00 0.00 0.00 2.41
513 514 1.937191 TGATGCAGAGTGGAGGTGTA 58.063 50.000 0.00 0.00 0.00 2.90
514 515 1.209019 GATGATGCAGAGTGGAGGTGT 59.791 52.381 0.00 0.00 0.00 4.16
515 516 1.485480 AGATGATGCAGAGTGGAGGTG 59.515 52.381 0.00 0.00 0.00 4.00
516 517 1.876849 AGATGATGCAGAGTGGAGGT 58.123 50.000 0.00 0.00 0.00 3.85
517 518 4.316645 CAATAGATGATGCAGAGTGGAGG 58.683 47.826 0.00 0.00 0.00 4.30
518 519 4.040095 TCCAATAGATGATGCAGAGTGGAG 59.960 45.833 0.00 0.00 0.00 3.86
519 520 3.969312 TCCAATAGATGATGCAGAGTGGA 59.031 43.478 0.00 0.00 0.00 4.02
520 521 4.202336 ACTCCAATAGATGATGCAGAGTGG 60.202 45.833 0.00 0.00 32.37 4.00
521 522 4.958509 ACTCCAATAGATGATGCAGAGTG 58.041 43.478 0.00 0.00 32.37 3.51
522 523 5.366460 CAACTCCAATAGATGATGCAGAGT 58.634 41.667 0.00 0.00 34.94 3.24
523 524 4.213694 GCAACTCCAATAGATGATGCAGAG 59.786 45.833 0.00 0.00 29.65 3.35
524 525 4.132336 GCAACTCCAATAGATGATGCAGA 58.868 43.478 0.00 0.00 29.65 4.26
525 526 3.881089 TGCAACTCCAATAGATGATGCAG 59.119 43.478 0.00 0.00 29.65 4.41
526 527 3.888583 TGCAACTCCAATAGATGATGCA 58.111 40.909 0.00 0.00 29.65 3.96
527 528 5.241064 AGAATGCAACTCCAATAGATGATGC 59.759 40.000 0.00 0.00 29.65 3.91
528 529 6.879276 AGAATGCAACTCCAATAGATGATG 57.121 37.500 0.00 0.00 29.65 3.07
529 530 7.994911 TGTAAGAATGCAACTCCAATAGATGAT 59.005 33.333 0.00 0.00 29.65 2.45
530 531 7.337938 TGTAAGAATGCAACTCCAATAGATGA 58.662 34.615 0.00 0.00 29.65 2.92
531 532 7.558161 TGTAAGAATGCAACTCCAATAGATG 57.442 36.000 0.00 0.00 0.00 2.90
532 533 8.216423 AGATGTAAGAATGCAACTCCAATAGAT 58.784 33.333 0.00 0.00 0.00 1.98
533 534 7.568349 AGATGTAAGAATGCAACTCCAATAGA 58.432 34.615 0.00 0.00 0.00 1.98
534 535 7.041508 GGAGATGTAAGAATGCAACTCCAATAG 60.042 40.741 15.00 0.00 30.75 1.73
535 536 6.767902 GGAGATGTAAGAATGCAACTCCAATA 59.232 38.462 15.00 0.00 30.75 1.90
536 537 5.591877 GGAGATGTAAGAATGCAACTCCAAT 59.408 40.000 15.00 0.00 30.75 3.16
537 538 4.943705 GGAGATGTAAGAATGCAACTCCAA 59.056 41.667 15.00 0.00 30.75 3.53
538 539 4.019411 TGGAGATGTAAGAATGCAACTCCA 60.019 41.667 17.48 17.48 30.75 3.86
539 540 4.517285 TGGAGATGTAAGAATGCAACTCC 58.483 43.478 13.63 13.63 30.75 3.85
540 541 6.690194 ATTGGAGATGTAAGAATGCAACTC 57.310 37.500 0.00 0.00 30.75 3.01
541 542 9.277783 GTATATTGGAGATGTAAGAATGCAACT 57.722 33.333 0.00 0.00 0.00 3.16
542 543 9.056005 TGTATATTGGAGATGTAAGAATGCAAC 57.944 33.333 0.00 0.00 0.00 4.17
543 544 9.797642 ATGTATATTGGAGATGTAAGAATGCAA 57.202 29.630 0.00 0.00 0.00 4.08
544 545 9.440773 GATGTATATTGGAGATGTAAGAATGCA 57.559 33.333 0.00 0.00 0.00 3.96
545 546 8.598924 CGATGTATATTGGAGATGTAAGAATGC 58.401 37.037 0.00 0.00 0.00 3.56
546 547 9.645059 ACGATGTATATTGGAGATGTAAGAATG 57.355 33.333 0.00 0.00 0.00 2.67
547 548 9.862371 GACGATGTATATTGGAGATGTAAGAAT 57.138 33.333 0.00 0.00 0.00 2.40
548 549 9.078990 AGACGATGTATATTGGAGATGTAAGAA 57.921 33.333 0.00 0.00 0.00 2.52
549 550 8.515414 CAGACGATGTATATTGGAGATGTAAGA 58.485 37.037 0.00 0.00 0.00 2.10
550 551 8.300286 ACAGACGATGTATATTGGAGATGTAAG 58.700 37.037 0.00 0.00 41.60 2.34
551 552 8.178313 ACAGACGATGTATATTGGAGATGTAA 57.822 34.615 0.00 0.00 41.60 2.41
552 553 7.761038 ACAGACGATGTATATTGGAGATGTA 57.239 36.000 0.00 0.00 41.60 2.29
553 554 6.656632 ACAGACGATGTATATTGGAGATGT 57.343 37.500 0.00 0.00 41.60 3.06
554 555 7.147976 TCAACAGACGATGTATATTGGAGATG 58.852 38.462 0.00 0.00 43.00 2.90
555 556 7.290110 TCAACAGACGATGTATATTGGAGAT 57.710 36.000 0.00 0.00 43.00 2.75
556 557 6.709018 TCAACAGACGATGTATATTGGAGA 57.291 37.500 0.00 0.00 43.00 3.71
557 558 6.980978 ACTTCAACAGACGATGTATATTGGAG 59.019 38.462 0.00 0.00 43.00 3.86
558 559 6.873997 ACTTCAACAGACGATGTATATTGGA 58.126 36.000 0.00 0.00 43.00 3.53
559 560 7.401860 CAACTTCAACAGACGATGTATATTGG 58.598 38.462 0.00 0.00 43.00 3.16
560 561 6.901887 GCAACTTCAACAGACGATGTATATTG 59.098 38.462 0.00 0.00 43.00 1.90
561 562 6.037172 GGCAACTTCAACAGACGATGTATATT 59.963 38.462 0.00 0.00 43.00 1.28
562 563 5.523916 GGCAACTTCAACAGACGATGTATAT 59.476 40.000 0.00 0.00 43.00 0.86
563 564 4.868171 GGCAACTTCAACAGACGATGTATA 59.132 41.667 0.00 0.00 43.00 1.47
564 565 3.684788 GGCAACTTCAACAGACGATGTAT 59.315 43.478 0.00 0.00 43.00 2.29
565 566 3.064207 GGCAACTTCAACAGACGATGTA 58.936 45.455 0.00 0.00 43.00 2.29
566 567 1.873591 GGCAACTTCAACAGACGATGT 59.126 47.619 0.00 0.00 46.97 3.06
567 568 2.601481 GGCAACTTCAACAGACGATG 57.399 50.000 0.00 0.00 0.00 3.84
579 580 7.229106 TTTACACCTTCGTAAAATAGGCAACTT 59.771 33.333 0.00 0.00 40.24 2.66
580 581 6.711645 TTTACACCTTCGTAAAATAGGCAACT 59.288 34.615 0.00 0.00 43.23 3.16
581 582 6.484818 TTACACCTTCGTAAAATAGGCAAC 57.515 37.500 0.00 0.00 32.08 4.17
582 583 7.507733 TTTTACACCTTCGTAAAATAGGCAA 57.492 32.000 5.19 0.00 43.14 4.52
590 591 8.543774 CAAAAATGCATTTTACACCTTCGTAAA 58.456 29.630 31.87 0.00 39.20 2.01
591 592 7.921214 TCAAAAATGCATTTTACACCTTCGTAA 59.079 29.630 31.87 2.40 39.20 3.18
592 593 7.426410 TCAAAAATGCATTTTACACCTTCGTA 58.574 30.769 31.87 9.91 39.20 3.43
593 594 6.276847 TCAAAAATGCATTTTACACCTTCGT 58.723 32.000 31.87 14.36 39.20 3.85
594 595 6.761731 TCAAAAATGCATTTTACACCTTCG 57.238 33.333 31.87 15.59 39.20 3.79
595 596 8.309163 TCATCAAAAATGCATTTTACACCTTC 57.691 30.769 31.87 0.00 39.20 3.46
596 597 8.723311 CATCATCAAAAATGCATTTTACACCTT 58.277 29.630 31.87 16.31 39.20 3.50
597 598 7.879160 ACATCATCAAAAATGCATTTTACACCT 59.121 29.630 31.87 16.97 39.20 4.00
598 599 8.031848 ACATCATCAAAAATGCATTTTACACC 57.968 30.769 31.87 0.00 39.20 4.16
629 630 4.194640 GCAAGAGCAATCAGGAGATGTAA 58.805 43.478 0.00 0.00 41.58 2.41
636 637 0.391661 GTCGGCAAGAGCAATCAGGA 60.392 55.000 0.00 0.00 44.61 3.86
762 764 0.179006 GCTGGGAATGGAGTGGGATC 60.179 60.000 0.00 0.00 0.00 3.36
763 765 0.625683 AGCTGGGAATGGAGTGGGAT 60.626 55.000 0.00 0.00 0.00 3.85
764 766 1.229951 AGCTGGGAATGGAGTGGGA 60.230 57.895 0.00 0.00 0.00 4.37
765 767 1.077212 CAGCTGGGAATGGAGTGGG 60.077 63.158 5.57 0.00 0.00 4.61
766 768 1.751927 GCAGCTGGGAATGGAGTGG 60.752 63.158 17.12 0.00 0.00 4.00
767 769 1.751927 GGCAGCTGGGAATGGAGTG 60.752 63.158 17.12 0.00 0.00 3.51
768 770 2.679716 GGCAGCTGGGAATGGAGT 59.320 61.111 17.12 0.00 0.00 3.85
769 771 2.515523 CGGCAGCTGGGAATGGAG 60.516 66.667 17.12 0.00 0.00 3.86
770 772 4.802051 GCGGCAGCTGGGAATGGA 62.802 66.667 17.12 0.00 41.01 3.41
907 926 4.129737 CTTCTCCTTCCGCGCGGA 62.130 66.667 45.37 45.37 43.52 5.54
926 946 0.319125 GATCTCGCGAGGATGGGTTC 60.319 60.000 33.98 15.86 0.00 3.62
1330 1365 0.179089 CTGATGGTTCCGAGCCAGAG 60.179 60.000 10.02 4.69 39.65 3.35
1359 1394 8.818057 CAGCAGTTATAATGACTTAACACCTAC 58.182 37.037 0.00 0.00 32.03 3.18
1360 1395 8.755028 TCAGCAGTTATAATGACTTAACACCTA 58.245 33.333 0.00 0.00 32.03 3.08
1415 1450 6.634805 ACAGTTAGCGTGTAGAGTACTAGTA 58.365 40.000 0.00 0.00 0.00 1.82
1498 1536 3.067320 TCGAGGTAAGATCTCTGCACATG 59.933 47.826 0.00 0.00 0.00 3.21
1714 1752 4.922026 GACCACCGTGCCACCGTT 62.922 66.667 0.00 0.00 0.00 4.44
1716 1754 4.920112 TTGACCACCGTGCCACCG 62.920 66.667 0.00 0.00 0.00 4.94
1724 1762 1.450312 GCATCCTCCTTGACCACCG 60.450 63.158 0.00 0.00 0.00 4.94
1768 1806 2.485124 GCTGAGCCTGATAGAACAGCAT 60.485 50.000 0.00 0.00 46.30 3.79
1797 1835 2.429571 GTGACCGCGCTGTCGTAA 60.430 61.111 24.03 6.90 38.11 3.18
2061 2099 5.308014 ACAACAGAGACAGCAATGATGTTA 58.692 37.500 5.36 0.00 30.17 2.41
2070 2108 0.744281 TGACGACAACAGAGACAGCA 59.256 50.000 0.00 0.00 0.00 4.41
2133 2171 1.628340 ACCTCATCGGTCACCAAATGA 59.372 47.619 8.31 8.31 44.93 2.57
2154 2192 4.096190 AGCCCTCATTGGATCATAGTTG 57.904 45.455 0.00 0.00 38.35 3.16
2175 2213 4.211125 TGTAGTCATTCAAGGCAAACCAA 58.789 39.130 0.00 0.00 39.06 3.67
2397 2435 5.047802 CACCTTGTGCAGTTCTGGATAAATT 60.048 40.000 5.29 0.00 0.00 1.82
2403 2441 0.179020 CCACCTTGTGCAGTTCTGGA 60.179 55.000 0.00 0.00 31.34 3.86
2424 2462 7.648908 TGAACAACAATGTCATCATCAAGAAAC 59.351 33.333 0.00 0.00 39.40 2.78
2595 2633 3.673484 CCAAACGCCCAGCCACAG 61.673 66.667 0.00 0.00 0.00 3.66
2761 2799 4.046286 AGACATGCCATTTTGGGTCTAA 57.954 40.909 0.00 0.00 35.66 2.10
2763 2801 2.564062 CAAGACATGCCATTTTGGGTCT 59.436 45.455 0.00 0.00 37.91 3.85
2916 2954 3.616956 TGAAGCAGAGGGTGTGAATAG 57.383 47.619 0.00 0.00 0.00 1.73
2992 3030 3.258622 TGCATTTGAAGCATGTCCATCAA 59.741 39.130 0.00 0.00 37.02 2.57
3123 3161 4.514441 ACCTGTAGTCGATGTACCTTATCG 59.486 45.833 7.55 7.55 46.45 2.92
3145 3183 0.756903 ACCTGTATGGCCGGTCATAC 59.243 55.000 40.01 40.01 45.76 2.39
3218 3256 5.009631 TGCAAGTTATGAAGCCATGTACTT 58.990 37.500 0.00 0.00 38.43 2.24
3469 3511 8.920509 AGGTACAAACAAAATTGAACAACTAC 57.079 30.769 0.00 0.00 34.38 2.73
3476 3518 7.201478 CGCAGAAAAGGTACAAACAAAATTGAA 60.201 33.333 0.00 0.00 34.38 2.69
3711 3753 1.573108 ACACCTAGCTGCATGGTAGT 58.427 50.000 14.49 12.25 43.23 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.