Multiple sequence alignment - TraesCS2D01G529400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G529400 chr2D 100.000 8598 0 0 1 8598 616601424 616610021 0.000000e+00 15878.0
1 TraesCS2D01G529400 chr2D 92.771 166 10 1 6983 7146 299891719 299891554 1.120000e-58 239.0
2 TraesCS2D01G529400 chr2D 92.727 165 10 1 6984 7146 87407361 87407525 4.010000e-58 237.0
3 TraesCS2D01G529400 chr2D 90.164 183 12 4 6974 7152 305517910 305517730 5.190000e-57 233.0
4 TraesCS2D01G529400 chr2D 88.889 126 10 3 5232 5357 130834786 130834907 1.490000e-32 152.0
5 TraesCS2D01G529400 chr2D 100.000 29 0 0 8464 8492 11521905 11521933 4.000000e-03 54.7
6 TraesCS2D01G529400 chr2A 96.240 2979 79 10 736 3692 746796859 746799826 0.000000e+00 4850.0
7 TraesCS2D01G529400 chr2A 96.225 2066 33 7 4569 6625 746800558 746802587 0.000000e+00 3341.0
8 TraesCS2D01G529400 chr2A 96.412 1282 29 9 6614 7888 746802780 746804051 0.000000e+00 2097.0
9 TraesCS2D01G529400 chr2A 96.117 309 10 1 3840 4148 746799817 746800123 3.580000e-138 503.0
10 TraesCS2D01G529400 chr2A 93.056 288 8 3 4147 4423 746800228 746800514 2.230000e-110 411.0
11 TraesCS2D01G529400 chr2A 94.828 174 7 2 575 746 746796643 746796816 3.960000e-68 270.0
12 TraesCS2D01G529400 chr2A 97.345 113 3 0 7887 7999 746804201 746804313 8.810000e-45 193.0
13 TraesCS2D01G529400 chr2A 91.870 123 8 2 11 131 746795420 746795542 4.130000e-38 171.0
14 TraesCS2D01G529400 chr2A 84.921 126 18 1 4921 5046 661407180 661407304 9.060000e-25 126.0
15 TraesCS2D01G529400 chr2A 95.122 41 2 0 8026 8066 746804351 746804391 2.000000e-06 65.8
16 TraesCS2D01G529400 chr2B 94.209 3143 100 22 608 3692 751575278 751578396 0.000000e+00 4721.0
17 TraesCS2D01G529400 chr2B 95.941 2439 54 12 4570 6988 751579025 751581438 0.000000e+00 3914.0
18 TraesCS2D01G529400 chr2B 97.140 874 20 4 7144 8013 751581436 751582308 0.000000e+00 1471.0
19 TraesCS2D01G529400 chr2B 93.478 598 23 8 3840 4424 751578387 751578981 0.000000e+00 874.0
20 TraesCS2D01G529400 chr2B 88.651 467 31 10 7 457 751574180 751574640 4.540000e-152 549.0
21 TraesCS2D01G529400 chr2B 86.410 390 49 3 8131 8519 751582575 751582961 2.870000e-114 424.0
22 TraesCS2D01G529400 chr2B 97.710 131 3 0 4441 4571 114138235 114138365 8.680000e-55 226.0
23 TraesCS2D01G529400 chr2B 82.533 229 36 4 8215 8441 90015690 90015464 1.890000e-46 198.0
24 TraesCS2D01G529400 chr2B 97.500 80 2 0 8065 8144 751582481 751582560 4.190000e-28 137.0
25 TraesCS2D01G529400 chr2B 95.294 85 4 0 8514 8598 751582988 751583072 1.510000e-27 135.0
26 TraesCS2D01G529400 chrUn 100.000 401 0 0 3261 3661 478681313 478681713 0.000000e+00 741.0
27 TraesCS2D01G529400 chrUn 83.544 237 32 5 8215 8448 75440353 75440121 1.880000e-51 215.0
28 TraesCS2D01G529400 chrUn 83.122 237 33 6 8210 8442 110516203 110516436 8.750000e-50 209.0
29 TraesCS2D01G529400 chrUn 88.961 154 6 1 3691 3833 27568706 27568553 6.860000e-41 180.0
30 TraesCS2D01G529400 chrUn 88.158 152 7 1 3689 3829 89020691 89020842 4.130000e-38 171.0
31 TraesCS2D01G529400 chrUn 88.000 150 7 1 3691 3829 154520111 154520260 5.340000e-37 167.0
32 TraesCS2D01G529400 chrUn 100.000 51 0 0 3786 3836 260159789 260159839 2.560000e-15 95.3
33 TraesCS2D01G529400 chr1D 78.809 722 81 47 2149 2825 229621554 229622248 3.710000e-113 420.0
34 TraesCS2D01G529400 chr1D 85.915 142 15 5 3691 3829 29806049 29806188 6.960000e-31 147.0
35 TraesCS2D01G529400 chr1D 84.672 137 16 4 3696 3829 170634554 170634420 1.950000e-26 132.0
36 TraesCS2D01G529400 chr4D 80.522 575 63 23 2149 2689 43405212 43405771 6.250000e-106 396.0
37 TraesCS2D01G529400 chr4D 92.727 165 10 1 6987 7149 465125471 465125307 4.010000e-58 237.0
38 TraesCS2D01G529400 chr4D 86.667 150 9 1 3691 3829 11294746 11294597 1.160000e-33 156.0
39 TraesCS2D01G529400 chr4D 86.301 146 9 6 3695 3829 132568693 132568548 1.930000e-31 148.0
40 TraesCS2D01G529400 chr4D 84.768 151 12 1 3690 3829 476319803 476319953 3.240000e-29 141.0
41 TraesCS2D01G529400 chr4D 86.364 110 12 3 5126 5234 500038552 500038659 5.450000e-22 117.0
42 TraesCS2D01G529400 chr4D 87.879 99 10 2 3690 3787 197922315 197922218 1.960000e-21 115.0
43 TraesCS2D01G529400 chr3D 94.545 165 7 1 6987 7149 87926000 87926164 3.980000e-63 254.0
44 TraesCS2D01G529400 chr3D 88.333 180 6 5 3689 3857 598201553 598201728 1.460000e-47 202.0
45 TraesCS2D01G529400 chr3D 88.125 160 8 1 3691 3839 572121682 572121523 6.860000e-41 180.0
46 TraesCS2D01G529400 chr3D 88.000 150 7 1 3691 3829 27888666 27888517 5.340000e-37 167.0
47 TraesCS2D01G529400 chr3D 88.000 150 7 1 3691 3829 345758226 345758077 5.340000e-37 167.0
48 TraesCS2D01G529400 chr3D 81.132 212 29 7 5027 5233 450573941 450573736 8.930000e-35 159.0
49 TraesCS2D01G529400 chr3D 95.833 96 4 0 3690 3785 19775491 19775396 1.160000e-33 156.0
50 TraesCS2D01G529400 chr3D 85.915 142 15 4 3691 3829 614670552 614670413 6.960000e-31 147.0
51 TraesCS2D01G529400 chr3D 86.364 110 12 3 5126 5234 281083579 281083686 5.450000e-22 117.0
52 TraesCS2D01G529400 chr3D 95.455 44 2 0 8464 8507 178588652 178588695 4.310000e-08 71.3
53 TraesCS2D01G529400 chr3D 97.059 34 1 0 8464 8497 556140311 556140344 3.350000e-04 58.4
54 TraesCS2D01G529400 chr7B 93.293 164 8 2 6985 7146 444539651 444539489 1.120000e-58 239.0
55 TraesCS2D01G529400 chr7B 95.192 104 4 1 3688 3790 648692109 648692212 6.910000e-36 163.0
56 TraesCS2D01G529400 chr7B 87.500 56 5 1 8463 8518 231335504 231335557 7.210000e-06 63.9
57 TraesCS2D01G529400 chr5A 93.252 163 9 1 6986 7146 653299602 653299440 1.120000e-58 239.0
58 TraesCS2D01G529400 chr6D 90.857 175 12 3 6974 7146 438321723 438321895 1.870000e-56 231.0
59 TraesCS2D01G529400 chr6D 87.500 160 9 1 3691 3839 13737108 13736949 3.190000e-39 174.0
60 TraesCS2D01G529400 chr6D 87.333 150 8 1 3691 3829 2899154 2899005 2.480000e-35 161.0
61 TraesCS2D01G529400 chr6D 86.667 150 9 1 3691 3829 224672 224523 1.160000e-33 156.0
62 TraesCS2D01G529400 chr6D 85.897 156 11 1 3685 3829 8638039 8638194 1.160000e-33 156.0
63 TraesCS2D01G529400 chr6D 97.727 44 1 0 3786 3829 367322268 367322225 9.260000e-10 76.8
64 TraesCS2D01G529400 chr4B 98.450 129 2 0 4444 4572 564875168 564875040 2.410000e-55 228.0
65 TraesCS2D01G529400 chr4B 97.674 129 2 1 4444 4571 83690447 83690319 4.040000e-53 220.0
66 TraesCS2D01G529400 chr4B 87.234 188 22 2 5129 5315 3864304 3864118 6.760000e-51 213.0
67 TraesCS2D01G529400 chr6B 97.710 131 3 0 4441 4571 200981629 200981759 8.680000e-55 226.0
68 TraesCS2D01G529400 chr6B 78.992 238 44 6 8210 8441 202507379 202507616 3.210000e-34 158.0
69 TraesCS2D01G529400 chr6B 96.970 33 1 0 8464 8496 31578531 31578563 1.000000e-03 56.5
70 TraesCS2D01G529400 chr5D 97.015 134 4 0 4441 4574 269087738 269087871 8.680000e-55 226.0
71 TraesCS2D01G529400 chr5D 96.992 133 3 1 4444 4575 414245789 414245657 1.120000e-53 222.0
72 TraesCS2D01G529400 chr5D 88.750 160 7 1 3691 3839 439787265 439787424 1.470000e-42 185.0
73 TraesCS2D01G529400 chr5D 88.667 150 6 1 3691 3829 526241396 526241545 1.150000e-38 172.0
74 TraesCS2D01G529400 chr5D 85.632 174 10 6 3691 3853 371220393 371220562 1.480000e-37 169.0
75 TraesCS2D01G529400 chr5D 86.503 163 10 3 3688 3839 448923355 448923516 1.480000e-37 169.0
76 TraesCS2D01G529400 chr5D 86.335 161 11 5 3691 3840 432936123 432935963 1.920000e-36 165.0
77 TraesCS2D01G529400 chr5D 87.333 150 8 3 3691 3829 556379559 556379410 2.480000e-35 161.0
78 TraesCS2D01G529400 chr5D 84.667 150 12 3 3691 3829 51274443 51274592 1.160000e-28 139.0
79 TraesCS2D01G529400 chr3B 97.710 131 3 0 4441 4571 384087630 384087760 8.680000e-55 226.0
80 TraesCS2D01G529400 chr3B 82.627 236 37 4 8209 8442 692952441 692952208 1.130000e-48 206.0
81 TraesCS2D01G529400 chr3B 89.441 161 6 1 3691 3840 762999208 762999048 8.810000e-45 193.0
82 TraesCS2D01G529400 chr5B 90.798 163 10 4 4414 4575 67434210 67434368 6.760000e-51 213.0
83 TraesCS2D01G529400 chr7D 92.568 148 8 3 4430 4576 238340344 238340199 8.750000e-50 209.0
84 TraesCS2D01G529400 chr7D 82.906 234 31 8 8215 8442 63397032 63396802 1.460000e-47 202.0
85 TraesCS2D01G529400 chr7D 86.111 180 14 2 3680 3848 181056693 181056514 5.300000e-42 183.0
86 TraesCS2D01G529400 chr7D 87.417 151 8 3 3690 3829 43073641 43073791 6.910000e-36 163.0
87 TraesCS2D01G529400 chr7D 88.060 134 5 1 3717 3839 28813386 28813253 1.930000e-31 148.0
88 TraesCS2D01G529400 chr7D 86.466 133 7 1 3720 3841 135435560 135435692 1.510000e-27 135.0
89 TraesCS2D01G529400 chr7A 80.913 241 37 9 8212 8448 50240101 50240336 1.910000e-41 182.0
90 TraesCS2D01G529400 chr4A 88.667 150 6 1 3691 3829 698116446 698116595 1.150000e-38 172.0
91 TraesCS2D01G529400 chr4A 87.919 149 7 1 3692 3829 669391208 669391356 1.920000e-36 165.0
92 TraesCS2D01G529400 chr4A 100.000 54 0 0 3786 3839 740896281 740896334 5.490000e-17 100.0
93 TraesCS2D01G529400 chr3A 81.152 191 34 1 8258 8446 287995875 287996065 1.490000e-32 152.0
94 TraesCS2D01G529400 chr3A 83.019 159 15 6 3692 3840 434793860 434794016 5.410000e-27 134.0
95 TraesCS2D01G529400 chr6A 92.308 104 7 1 3688 3790 4599029 4599132 6.960000e-31 147.0
96 TraesCS2D01G529400 chr1A 98.182 55 0 1 3786 3839 561935544 561935490 2.560000e-15 95.3
97 TraesCS2D01G529400 chr1B 90.000 50 3 2 8464 8513 623570718 623570671 7.210000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G529400 chr2D 616601424 616610021 8597 False 15878.000000 15878 100.000000 1 8598 1 chr2D.!!$F4 8597
1 TraesCS2D01G529400 chr2A 746795420 746804391 8971 False 1322.422222 4850 95.246111 11 8066 9 chr2A.!!$F2 8055
2 TraesCS2D01G529400 chr2B 751574180 751583072 8892 False 1528.125000 4721 93.577875 7 8598 8 chr2B.!!$F2 8591
3 TraesCS2D01G529400 chr1D 229621554 229622248 694 False 420.000000 420 78.809000 2149 2825 1 chr1D.!!$F2 676
4 TraesCS2D01G529400 chr4D 43405212 43405771 559 False 396.000000 396 80.522000 2149 2689 1 chr4D.!!$F1 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
388 472 1.394618 CCGAACCTGACCCAAAACAA 58.605 50.000 0.00 0.0 0.00 2.83 F
1245 2591 0.179179 GTCGAATTGCTTGCTCTGGC 60.179 55.000 0.00 0.0 39.26 4.85 F
1343 2689 0.844661 TGGAGGGGCTGTGTTATGGT 60.845 55.000 0.00 0.0 0.00 3.55 F
2043 3391 2.711009 TCAGGTCCAGAGTCCAACATTT 59.289 45.455 0.00 0.0 0.00 2.32 F
3740 5141 1.082117 AGCGCCGACCTCAAAATACG 61.082 55.000 2.29 0.0 0.00 3.06 F
4453 6006 0.100146 GTACGCTTGTACTCCCTCCG 59.900 60.000 0.00 0.0 44.14 4.63 F
4457 6010 0.108281 GCTTGTACTCCCTCCGTTCC 60.108 60.000 0.00 0.0 0.00 3.62 F
4460 6013 0.178955 TGTACTCCCTCCGTTCCACA 60.179 55.000 0.00 0.0 0.00 4.17 F
5124 6677 0.390340 TCTGTCAGATGTGCTTCGGC 60.390 55.000 0.00 0.0 42.19 5.54 F
5450 7011 2.032030 CGTGTCTCTCAAATGCGGTTTT 60.032 45.455 0.00 0.0 0.00 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1365 2713 0.108424 GACAGGACGAGCAGCATTCT 60.108 55.000 0.00 0.0 0.00 2.40 R
2052 3400 6.276091 GGATGCTTTTGTTGAGTTTCTTCTT 58.724 36.000 0.00 0.0 0.00 2.52 R
2674 4053 6.798482 ACACATGCAAATGATGATAAATCGT 58.202 32.000 7.51 0.0 0.00 3.73 R
3766 5167 0.738975 TGTCTCGCTAATAGCACGCT 59.261 50.000 13.15 0.0 42.58 5.07 R
5416 6977 3.344515 AGAGACACGTGCTACTATCACA 58.655 45.455 17.22 0.0 34.27 3.58 R
5589 7153 4.713553 TGGAGTGCACTTACTCAATTGAA 58.286 39.130 22.65 0.0 46.97 2.69 R
6338 7905 8.366671 ACTATTACTTGAGTTTTCACACTGAC 57.633 34.615 0.00 0.0 31.71 3.51 R
7014 8794 9.494271 GCATGTAGTCCATATTGAAATCTCTAA 57.506 33.333 0.00 0.0 30.71 2.10 R
7039 8819 2.095059 ACATTCACTCATTTTGCTCCGC 60.095 45.455 0.00 0.0 0.00 5.54 R
7865 9649 1.303282 CCCTCCCTGCAACCTTACC 59.697 63.158 0.00 0.0 0.00 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 4.080863 CCCATGTAGCTCTTTCTAACCAGT 60.081 45.833 0.00 0.00 0.00 4.00
62 63 6.128172 CCATGTAGCTCTTTCTAACCAGTTTG 60.128 42.308 0.00 0.00 0.00 2.93
110 112 5.824624 AGCCAAGTTCATGGACTATACATTG 59.175 40.000 7.19 0.35 43.54 2.82
388 472 1.394618 CCGAACCTGACCCAAAACAA 58.605 50.000 0.00 0.00 0.00 2.83
410 1154 8.409358 ACAAATGAATAGTAGTTTTTGCCTCT 57.591 30.769 6.79 0.00 0.00 3.69
548 1296 5.650703 CCTAAAATACCGATGTCCCAGTTTT 59.349 40.000 0.00 0.00 0.00 2.43
549 1297 6.152154 CCTAAAATACCGATGTCCCAGTTTTT 59.848 38.462 0.00 0.00 0.00 1.94
594 1867 5.290386 GGAAGTTTCGAGTTTCTTCTGAGA 58.710 41.667 15.16 0.00 37.18 3.27
599 1872 7.887381 AGTTTCGAGTTTCTTCTGAGATTCTA 58.113 34.615 0.00 0.00 0.00 2.10
708 1989 4.758165 CAGGTTTACCGGTGACTTTTACAT 59.242 41.667 19.93 0.00 42.08 2.29
709 1990 4.999311 AGGTTTACCGGTGACTTTTACATC 59.001 41.667 19.93 0.00 42.08 3.06
710 1991 4.999311 GGTTTACCGGTGACTTTTACATCT 59.001 41.667 19.93 0.00 0.00 2.90
712 1993 6.091305 GGTTTACCGGTGACTTTTACATCTAC 59.909 42.308 19.93 0.00 0.00 2.59
713 1994 6.594788 TTACCGGTGACTTTTACATCTACT 57.405 37.500 19.93 0.00 0.00 2.57
839 2179 2.346365 GCCGTCTTCCCCGTTCTT 59.654 61.111 0.00 0.00 0.00 2.52
1069 2415 1.427819 GTTTCCACGCCTAATGCCG 59.572 57.895 0.00 0.00 36.24 5.69
1178 2524 0.461135 TAAGCGTCCCCGTTATGTCC 59.539 55.000 0.00 0.00 36.15 4.02
1190 2536 2.417719 GTTATGTCCCATGGCTCGATC 58.582 52.381 6.09 0.00 0.00 3.69
1191 2537 0.976641 TATGTCCCATGGCTCGATCC 59.023 55.000 6.09 0.00 0.00 3.36
1192 2538 1.772819 ATGTCCCATGGCTCGATCCC 61.773 60.000 6.09 0.00 0.00 3.85
1223 2569 4.681978 GTCTCCGGCGGTTGCAGT 62.682 66.667 27.32 0.00 45.35 4.40
1245 2591 0.179179 GTCGAATTGCTTGCTCTGGC 60.179 55.000 0.00 0.00 39.26 4.85
1343 2689 0.844661 TGGAGGGGCTGTGTTATGGT 60.845 55.000 0.00 0.00 0.00 3.55
1353 2699 4.457603 GGCTGTGTTATGGTTGTTCATGTA 59.542 41.667 0.00 0.00 0.00 2.29
1365 2713 8.628630 TGGTTGTTCATGTATGATTAGTTTGA 57.371 30.769 0.00 0.00 36.56 2.69
1417 2765 5.307204 AGTTAACATAGCCCGTTTGTGTTA 58.693 37.500 8.61 0.00 35.01 2.41
1418 2766 5.179929 AGTTAACATAGCCCGTTTGTGTTAC 59.820 40.000 8.61 0.00 35.65 2.50
1439 2787 9.809096 TGTTACTCTGATTTGAGATGAGATTAC 57.191 33.333 0.00 0.00 37.50 1.89
1548 2896 9.921637 GTTGGTAATGAAAGAATCCAATTACAA 57.078 29.630 0.00 0.00 37.31 2.41
1555 2903 5.859205 AAGAATCCAATTACAATGGGCTC 57.141 39.130 0.00 0.00 38.54 4.70
1603 2951 4.775058 TTTGCTACATATGCGGTTTGTT 57.225 36.364 1.58 0.00 0.00 2.83
1740 3088 7.552330 TCATTAGTAATATTGTCAGTGCAAGCA 59.448 33.333 0.00 0.00 0.00 3.91
2000 3348 4.142730 GCTGATAGTCCTGAAGTGCAAAAG 60.143 45.833 0.00 0.00 0.00 2.27
2031 3379 8.432805 ACAGAATAACCTATTTATCAGGTCCAG 58.567 37.037 0.00 0.00 45.90 3.86
2043 3391 2.711009 TCAGGTCCAGAGTCCAACATTT 59.289 45.455 0.00 0.00 0.00 2.32
2674 4053 7.613585 TCGTCCTGAACTTGTTATATAACCAA 58.386 34.615 20.35 13.89 35.37 3.67
2768 4166 5.240844 GGCTTAACAAGGATTACTGTGTTGT 59.759 40.000 0.00 0.00 34.53 3.32
2769 4167 6.142817 GCTTAACAAGGATTACTGTGTTGTG 58.857 40.000 0.00 0.00 34.53 3.33
2770 4168 6.238648 GCTTAACAAGGATTACTGTGTTGTGT 60.239 38.462 0.00 0.00 34.53 3.72
2771 4169 5.499139 AACAAGGATTACTGTGTTGTGTG 57.501 39.130 0.00 0.00 32.78 3.82
2772 4170 4.523083 ACAAGGATTACTGTGTTGTGTGT 58.477 39.130 0.00 0.00 30.25 3.72
2773 4171 4.947388 ACAAGGATTACTGTGTTGTGTGTT 59.053 37.500 0.00 0.00 30.25 3.32
2774 4172 5.163663 ACAAGGATTACTGTGTTGTGTGTTG 60.164 40.000 0.00 0.00 30.25 3.33
2781 4179 2.916716 CTGTGTTGTGTGTTGCTTTCAC 59.083 45.455 0.00 0.00 36.48 3.18
2882 4283 9.981460 AATGAAATCCTCCAGTAATCTAGTTTT 57.019 29.630 0.00 0.00 0.00 2.43
3066 4467 8.592998 GTTATATCACTGTGAAGTTTAGAACCG 58.407 37.037 15.31 0.00 0.00 4.44
3661 5062 4.870426 CGTGATGTTTCTACTTAGCCATGT 59.130 41.667 0.00 0.00 0.00 3.21
3684 5085 3.874543 TCGTTGCTTTGTACACATCAAGT 59.125 39.130 0.00 0.00 0.00 3.16
3685 5086 5.051153 TCGTTGCTTTGTACACATCAAGTA 58.949 37.500 0.00 0.00 0.00 2.24
3686 5087 5.699001 TCGTTGCTTTGTACACATCAAGTAT 59.301 36.000 0.00 0.00 0.00 2.12
3687 5088 6.203915 TCGTTGCTTTGTACACATCAAGTATT 59.796 34.615 0.00 0.00 0.00 1.89
3688 5089 7.385478 TCGTTGCTTTGTACACATCAAGTATTA 59.615 33.333 0.00 0.00 0.00 0.98
3689 5090 7.688167 CGTTGCTTTGTACACATCAAGTATTAG 59.312 37.037 0.00 0.00 0.00 1.73
3690 5091 7.072177 TGCTTTGTACACATCAAGTATTAGC 57.928 36.000 0.00 0.00 0.00 3.09
3691 5092 6.652900 TGCTTTGTACACATCAAGTATTAGCA 59.347 34.615 0.00 0.00 33.61 3.49
3692 5093 7.174080 TGCTTTGTACACATCAAGTATTAGCAA 59.826 33.333 0.00 0.00 33.36 3.91
3693 5094 8.184192 GCTTTGTACACATCAAGTATTAGCAAT 58.816 33.333 0.00 0.00 0.00 3.56
3694 5095 9.494479 CTTTGTACACATCAAGTATTAGCAATG 57.506 33.333 0.00 0.00 0.00 2.82
3695 5096 8.785329 TTGTACACATCAAGTATTAGCAATGA 57.215 30.769 0.00 0.00 0.00 2.57
3696 5097 8.785329 TGTACACATCAAGTATTAGCAATGAA 57.215 30.769 0.00 0.00 0.00 2.57
3697 5098 9.225436 TGTACACATCAAGTATTAGCAATGAAA 57.775 29.630 0.00 0.00 0.00 2.69
3723 5124 6.526566 AATAGTGCGCTACAGTAAAATAGC 57.473 37.500 9.64 0.00 37.72 2.97
3727 5128 2.924432 GCTACAGTAAAATAGCGCCG 57.076 50.000 2.29 0.00 34.87 6.46
3728 5129 2.466846 GCTACAGTAAAATAGCGCCGA 58.533 47.619 2.29 0.00 34.87 5.54
3729 5130 2.218075 GCTACAGTAAAATAGCGCCGAC 59.782 50.000 2.29 0.00 34.87 4.79
3730 5131 1.648504 ACAGTAAAATAGCGCCGACC 58.351 50.000 2.29 0.00 0.00 4.79
3731 5132 1.206371 ACAGTAAAATAGCGCCGACCT 59.794 47.619 2.29 0.00 0.00 3.85
3732 5133 1.859080 CAGTAAAATAGCGCCGACCTC 59.141 52.381 2.29 0.00 0.00 3.85
3733 5134 1.479323 AGTAAAATAGCGCCGACCTCA 59.521 47.619 2.29 0.00 0.00 3.86
3734 5135 2.093869 AGTAAAATAGCGCCGACCTCAA 60.094 45.455 2.29 0.00 0.00 3.02
3735 5136 1.816074 AAAATAGCGCCGACCTCAAA 58.184 45.000 2.29 0.00 0.00 2.69
3736 5137 1.816074 AAATAGCGCCGACCTCAAAA 58.184 45.000 2.29 0.00 0.00 2.44
3737 5138 2.038387 AATAGCGCCGACCTCAAAAT 57.962 45.000 2.29 0.00 0.00 1.82
3738 5139 2.902705 ATAGCGCCGACCTCAAAATA 57.097 45.000 2.29 0.00 0.00 1.40
3739 5140 1.930567 TAGCGCCGACCTCAAAATAC 58.069 50.000 2.29 0.00 0.00 1.89
3740 5141 1.082117 AGCGCCGACCTCAAAATACG 61.082 55.000 2.29 0.00 0.00 3.06
3741 5142 1.347221 CGCCGACCTCAAAATACGC 59.653 57.895 0.00 0.00 0.00 4.42
3742 5143 1.082117 CGCCGACCTCAAAATACGCT 61.082 55.000 0.00 0.00 0.00 5.07
3743 5144 1.799917 CGCCGACCTCAAAATACGCTA 60.800 52.381 0.00 0.00 0.00 4.26
3744 5145 2.480845 GCCGACCTCAAAATACGCTAT 58.519 47.619 0.00 0.00 0.00 2.97
3745 5146 2.870411 GCCGACCTCAAAATACGCTATT 59.130 45.455 0.00 0.00 0.00 1.73
3746 5147 4.053295 GCCGACCTCAAAATACGCTATTA 58.947 43.478 0.00 0.00 0.00 0.98
3747 5148 4.150098 GCCGACCTCAAAATACGCTATTAG 59.850 45.833 0.00 0.00 0.00 1.73
3748 5149 4.150098 CCGACCTCAAAATACGCTATTAGC 59.850 45.833 5.56 5.56 38.02 3.09
3781 5182 3.132629 GCTATAGCGTGCTATTAGCGA 57.867 47.619 18.62 0.92 46.26 4.93
3782 5183 3.102276 GCTATAGCGTGCTATTAGCGAG 58.898 50.000 18.62 11.00 46.26 5.03
3783 5184 3.181509 GCTATAGCGTGCTATTAGCGAGA 60.182 47.826 18.62 0.00 46.26 4.04
3784 5185 2.682952 TAGCGTGCTATTAGCGAGAC 57.317 50.000 10.94 3.28 46.26 3.36
3785 5186 0.738975 AGCGTGCTATTAGCGAGACA 59.261 50.000 10.94 0.00 46.26 3.41
3786 5187 1.338337 AGCGTGCTATTAGCGAGACAT 59.662 47.619 10.94 0.00 46.26 3.06
3787 5188 2.552743 AGCGTGCTATTAGCGAGACATA 59.447 45.455 10.94 0.00 46.26 2.29
3788 5189 3.191581 AGCGTGCTATTAGCGAGACATAT 59.808 43.478 10.94 0.00 46.26 1.78
3789 5190 4.395231 AGCGTGCTATTAGCGAGACATATA 59.605 41.667 10.94 0.00 46.26 0.86
3790 5191 5.066634 AGCGTGCTATTAGCGAGACATATAT 59.933 40.000 10.94 0.00 46.26 0.86
3791 5192 5.744345 GCGTGCTATTAGCGAGACATATATT 59.256 40.000 10.94 0.00 46.26 1.28
3792 5193 6.253727 GCGTGCTATTAGCGAGACATATATTT 59.746 38.462 10.94 0.00 46.26 1.40
3793 5194 7.431376 GCGTGCTATTAGCGAGACATATATTTA 59.569 37.037 10.94 0.00 46.26 1.40
3794 5195 8.948946 CGTGCTATTAGCGAGACATATATTTAG 58.051 37.037 10.94 0.00 46.26 1.85
3795 5196 8.747666 GTGCTATTAGCGAGACATATATTTAGC 58.252 37.037 10.94 0.00 46.26 3.09
3796 5197 7.644157 TGCTATTAGCGAGACATATATTTAGCG 59.356 37.037 10.94 0.00 46.26 4.26
3797 5198 7.856398 GCTATTAGCGAGACATATATTTAGCGA 59.144 37.037 0.00 0.00 0.00 4.93
3798 5199 9.376171 CTATTAGCGAGACATATATTTAGCGAG 57.624 37.037 0.00 0.00 0.00 5.03
3799 5200 4.987832 AGCGAGACATATATTTAGCGAGG 58.012 43.478 0.00 0.00 0.00 4.63
3800 5201 3.548268 GCGAGACATATATTTAGCGAGGC 59.452 47.826 0.00 0.00 0.00 4.70
3801 5202 4.733850 CGAGACATATATTTAGCGAGGCA 58.266 43.478 0.00 0.00 0.00 4.75
3802 5203 5.161358 CGAGACATATATTTAGCGAGGCAA 58.839 41.667 0.00 0.00 0.00 4.52
3803 5204 5.807520 CGAGACATATATTTAGCGAGGCAAT 59.192 40.000 0.00 0.00 0.00 3.56
3804 5205 6.311445 CGAGACATATATTTAGCGAGGCAATT 59.689 38.462 0.00 0.00 0.00 2.32
3805 5206 7.463383 CGAGACATATATTTAGCGAGGCAATTC 60.463 40.741 0.00 0.00 0.00 2.17
3806 5207 7.390027 AGACATATATTTAGCGAGGCAATTCT 58.610 34.615 0.00 0.00 0.00 2.40
3807 5208 7.547370 AGACATATATTTAGCGAGGCAATTCTC 59.453 37.037 0.00 0.00 0.00 2.87
3808 5209 7.161404 ACATATATTTAGCGAGGCAATTCTCA 58.839 34.615 0.00 0.00 33.59 3.27
3809 5210 7.661437 ACATATATTTAGCGAGGCAATTCTCAA 59.339 33.333 0.00 0.00 33.59 3.02
3810 5211 8.671921 CATATATTTAGCGAGGCAATTCTCAAT 58.328 33.333 0.00 0.00 33.59 2.57
3811 5212 9.890629 ATATATTTAGCGAGGCAATTCTCAATA 57.109 29.630 0.00 0.00 33.59 1.90
3812 5213 5.734855 TTTAGCGAGGCAATTCTCAATAC 57.265 39.130 0.00 0.00 33.59 1.89
3813 5214 2.205074 AGCGAGGCAATTCTCAATACG 58.795 47.619 0.00 0.00 33.59 3.06
3814 5215 1.333258 GCGAGGCAATTCTCAATACGC 60.333 52.381 0.00 0.00 37.11 4.42
3815 5216 2.205074 CGAGGCAATTCTCAATACGCT 58.795 47.619 0.00 0.00 33.59 5.07
3816 5217 3.381045 CGAGGCAATTCTCAATACGCTA 58.619 45.455 0.00 0.00 33.59 4.26
3817 5218 3.990469 CGAGGCAATTCTCAATACGCTAT 59.010 43.478 0.00 0.00 33.59 2.97
3818 5219 5.161358 CGAGGCAATTCTCAATACGCTATA 58.839 41.667 0.00 0.00 33.59 1.31
3819 5220 5.287274 CGAGGCAATTCTCAATACGCTATAG 59.713 44.000 0.00 0.00 33.59 1.31
3820 5221 4.932200 AGGCAATTCTCAATACGCTATAGC 59.068 41.667 15.09 15.09 37.78 2.97
3925 5326 4.260170 GAGCTGTTTCAGTTCTCATGGAT 58.740 43.478 0.00 0.00 38.40 3.41
4025 5426 4.141914 CCTTTCGAGCATATATACTCCCCC 60.142 50.000 7.28 0.00 0.00 5.40
4084 5487 6.232692 ACAAGGCTTGCAAATTTAATGACAT 58.767 32.000 26.45 0.00 0.00 3.06
4106 5509 7.952671 ACATTTTCTTCCTTTTTCCCTAGTTC 58.047 34.615 0.00 0.00 0.00 3.01
4107 5510 7.563556 ACATTTTCTTCCTTTTTCCCTAGTTCA 59.436 33.333 0.00 0.00 0.00 3.18
4236 5763 4.879295 TCATACCATTCCCAATCCACTT 57.121 40.909 0.00 0.00 0.00 3.16
4260 5787 7.283625 TGTGGCAAACAAAGTAACATCTTAT 57.716 32.000 0.00 0.00 35.24 1.73
4446 5999 3.936372 AGTCATGTGTACGCTTGTACT 57.064 42.857 18.53 16.68 46.96 2.73
4447 6000 3.834610 AGTCATGTGTACGCTTGTACTC 58.165 45.455 18.53 10.09 46.96 2.59
4448 6001 2.921754 GTCATGTGTACGCTTGTACTCC 59.078 50.000 18.53 3.74 46.96 3.85
4449 6002 2.094390 TCATGTGTACGCTTGTACTCCC 60.094 50.000 18.53 0.00 46.96 4.30
4450 6003 1.624336 TGTGTACGCTTGTACTCCCT 58.376 50.000 8.10 0.00 46.96 4.20
4451 6004 1.542915 TGTGTACGCTTGTACTCCCTC 59.457 52.381 8.10 0.00 46.96 4.30
4452 6005 1.135170 GTGTACGCTTGTACTCCCTCC 60.135 57.143 0.00 0.00 46.96 4.30
4453 6006 0.100146 GTACGCTTGTACTCCCTCCG 59.900 60.000 0.00 0.00 44.14 4.63
4454 6007 0.322816 TACGCTTGTACTCCCTCCGT 60.323 55.000 0.00 0.00 0.00 4.69
4455 6008 1.183676 ACGCTTGTACTCCCTCCGTT 61.184 55.000 0.00 0.00 0.00 4.44
4456 6009 0.458025 CGCTTGTACTCCCTCCGTTC 60.458 60.000 0.00 0.00 0.00 3.95
4457 6010 0.108281 GCTTGTACTCCCTCCGTTCC 60.108 60.000 0.00 0.00 0.00 3.62
4458 6011 1.263356 CTTGTACTCCCTCCGTTCCA 58.737 55.000 0.00 0.00 0.00 3.53
4459 6012 0.971386 TTGTACTCCCTCCGTTCCAC 59.029 55.000 0.00 0.00 0.00 4.02
4460 6013 0.178955 TGTACTCCCTCCGTTCCACA 60.179 55.000 0.00 0.00 0.00 4.17
4461 6014 0.971386 GTACTCCCTCCGTTCCACAA 59.029 55.000 0.00 0.00 0.00 3.33
4462 6015 1.553704 GTACTCCCTCCGTTCCACAAT 59.446 52.381 0.00 0.00 0.00 2.71
4463 6016 1.946984 ACTCCCTCCGTTCCACAATA 58.053 50.000 0.00 0.00 0.00 1.90
4464 6017 1.553704 ACTCCCTCCGTTCCACAATAC 59.446 52.381 0.00 0.00 0.00 1.89
4465 6018 1.553248 CTCCCTCCGTTCCACAATACA 59.447 52.381 0.00 0.00 0.00 2.29
4466 6019 2.170607 CTCCCTCCGTTCCACAATACAT 59.829 50.000 0.00 0.00 0.00 2.29
4467 6020 2.093181 TCCCTCCGTTCCACAATACATG 60.093 50.000 0.00 0.00 0.00 3.21
4468 6021 1.670811 CCTCCGTTCCACAATACATGC 59.329 52.381 0.00 0.00 0.00 4.06
4469 6022 2.632377 CTCCGTTCCACAATACATGCT 58.368 47.619 0.00 0.00 0.00 3.79
4470 6023 3.009723 CTCCGTTCCACAATACATGCTT 58.990 45.455 0.00 0.00 0.00 3.91
4471 6024 3.417101 TCCGTTCCACAATACATGCTTT 58.583 40.909 0.00 0.00 0.00 3.51
4472 6025 3.438781 TCCGTTCCACAATACATGCTTTC 59.561 43.478 0.00 0.00 0.00 2.62
4473 6026 3.440173 CCGTTCCACAATACATGCTTTCT 59.560 43.478 0.00 0.00 0.00 2.52
4474 6027 4.634004 CCGTTCCACAATACATGCTTTCTA 59.366 41.667 0.00 0.00 0.00 2.10
4475 6028 5.296780 CCGTTCCACAATACATGCTTTCTAT 59.703 40.000 0.00 0.00 0.00 1.98
4476 6029 6.183360 CCGTTCCACAATACATGCTTTCTATT 60.183 38.462 0.00 0.00 0.00 1.73
4477 6030 7.250569 CGTTCCACAATACATGCTTTCTATTT 58.749 34.615 0.00 0.00 0.00 1.40
4478 6031 7.218773 CGTTCCACAATACATGCTTTCTATTTG 59.781 37.037 0.00 0.00 0.00 2.32
4479 6032 7.701539 TCCACAATACATGCTTTCTATTTGT 57.298 32.000 0.00 0.00 0.00 2.83
4480 6033 7.761409 TCCACAATACATGCTTTCTATTTGTC 58.239 34.615 0.00 0.00 0.00 3.18
4481 6034 7.392953 TCCACAATACATGCTTTCTATTTGTCA 59.607 33.333 0.00 0.00 0.00 3.58
4482 6035 8.028354 CCACAATACATGCTTTCTATTTGTCAA 58.972 33.333 0.00 0.00 0.00 3.18
4483 6036 9.409312 CACAATACATGCTTTCTATTTGTCAAA 57.591 29.630 0.00 0.00 0.00 2.69
4484 6037 9.979578 ACAATACATGCTTTCTATTTGTCAAAA 57.020 25.926 1.31 0.00 0.00 2.44
4536 6089 9.787435 GTATATAGGTACATCCATTTTTGGACA 57.213 33.333 0.00 0.00 41.33 4.02
4538 6091 9.707957 ATATAGGTACATCCATTTTTGGACAAA 57.292 29.630 0.00 0.00 41.33 2.83
4539 6092 6.933514 AGGTACATCCATTTTTGGACAAAT 57.066 33.333 0.00 0.00 41.33 2.32
4540 6093 6.700352 AGGTACATCCATTTTTGGACAAATG 58.300 36.000 0.00 0.04 41.33 2.32
4549 6102 7.181143 CATTTTTGGACAAATGGAAGTCAAG 57.819 36.000 0.00 0.00 39.53 3.02
4550 6103 5.930837 TTTTGGACAAATGGAAGTCAAGT 57.069 34.783 0.00 0.00 36.50 3.16
4551 6104 7.411486 TTTTTGGACAAATGGAAGTCAAGTA 57.589 32.000 0.00 0.00 36.50 2.24
4552 6105 7.595819 TTTTGGACAAATGGAAGTCAAGTAT 57.404 32.000 0.00 0.00 36.50 2.12
4553 6106 7.595819 TTTGGACAAATGGAAGTCAAGTATT 57.404 32.000 0.00 0.00 36.50 1.89
4554 6107 7.595819 TTGGACAAATGGAAGTCAAGTATTT 57.404 32.000 0.00 0.00 36.50 1.40
4555 6108 7.595819 TGGACAAATGGAAGTCAAGTATTTT 57.404 32.000 0.00 0.00 36.50 1.82
4556 6109 7.432869 TGGACAAATGGAAGTCAAGTATTTTG 58.567 34.615 0.00 0.00 36.50 2.44
4557 6110 6.868339 GGACAAATGGAAGTCAAGTATTTTGG 59.132 38.462 0.00 0.00 36.50 3.28
4558 6111 7.255801 GGACAAATGGAAGTCAAGTATTTTGGA 60.256 37.037 0.00 0.00 36.50 3.53
4559 6112 8.017418 ACAAATGGAAGTCAAGTATTTTGGAA 57.983 30.769 0.00 0.00 29.41 3.53
4560 6113 8.143835 ACAAATGGAAGTCAAGTATTTTGGAAG 58.856 33.333 0.00 0.00 29.41 3.46
4561 6114 8.359642 CAAATGGAAGTCAAGTATTTTGGAAGA 58.640 33.333 0.00 0.00 0.00 2.87
4562 6115 7.693969 ATGGAAGTCAAGTATTTTGGAAGAG 57.306 36.000 0.00 0.00 0.00 2.85
4563 6116 6.837312 TGGAAGTCAAGTATTTTGGAAGAGA 58.163 36.000 0.00 0.00 0.00 3.10
4564 6117 6.936900 TGGAAGTCAAGTATTTTGGAAGAGAG 59.063 38.462 0.00 0.00 0.00 3.20
4565 6118 6.372937 GGAAGTCAAGTATTTTGGAAGAGAGG 59.627 42.308 0.00 0.00 0.00 3.69
4566 6119 5.810095 AGTCAAGTATTTTGGAAGAGAGGG 58.190 41.667 0.00 0.00 0.00 4.30
4567 6120 5.548056 AGTCAAGTATTTTGGAAGAGAGGGA 59.452 40.000 0.00 0.00 0.00 4.20
4568 6121 5.877564 GTCAAGTATTTTGGAAGAGAGGGAG 59.122 44.000 0.00 0.00 0.00 4.30
4569 6122 5.548056 TCAAGTATTTTGGAAGAGAGGGAGT 59.452 40.000 0.00 0.00 0.00 3.85
4570 6123 6.729100 TCAAGTATTTTGGAAGAGAGGGAGTA 59.271 38.462 0.00 0.00 0.00 2.59
4592 6145 3.819368 TGTTTCTTCAGTGATGAGCCAA 58.181 40.909 8.56 0.00 0.00 4.52
4613 6166 6.818142 GCCAATTTGCTAGATGTAAAATTGGT 59.182 34.615 25.14 0.00 38.88 3.67
4614 6167 7.978975 GCCAATTTGCTAGATGTAAAATTGGTA 59.021 33.333 25.14 0.00 38.88 3.25
4615 6168 9.520204 CCAATTTGCTAGATGTAAAATTGGTAG 57.480 33.333 20.58 5.85 36.08 3.18
4616 6169 9.023967 CAATTTGCTAGATGTAAAATTGGTAGC 57.976 33.333 10.05 0.00 34.15 3.58
4617 6170 7.695480 TTTGCTAGATGTAAAATTGGTAGCA 57.305 32.000 0.00 0.00 39.60 3.49
4618 6171 7.880160 TTGCTAGATGTAAAATTGGTAGCAT 57.120 32.000 0.00 0.00 40.65 3.79
4619 6172 7.880160 TGCTAGATGTAAAATTGGTAGCATT 57.120 32.000 0.00 0.00 37.17 3.56
4620 6173 8.972458 TGCTAGATGTAAAATTGGTAGCATTA 57.028 30.769 0.00 0.00 37.17 1.90
4692 6245 7.591421 TTTCATTGATACATTGAGATGGCAT 57.409 32.000 0.00 0.00 37.60 4.40
4765 6318 4.735369 AGTGTTCCACCCAACAAATATCA 58.265 39.130 0.00 0.00 38.01 2.15
4766 6319 5.332743 AGTGTTCCACCCAACAAATATCAT 58.667 37.500 0.00 0.00 38.01 2.45
4772 6325 4.580167 CCACCCAACAAATATCATGTCGAT 59.420 41.667 0.00 0.00 38.21 3.59
4803 6356 7.161404 TGTAGACGTTGAAGGAGTAGTAGTTA 58.839 38.462 0.00 0.00 0.00 2.24
4904 6457 4.572389 TGCTTTTCTTCACTCTTGTCAGTC 59.428 41.667 0.00 0.00 0.00 3.51
5004 6557 7.876582 TGTGGCATTTTGAATTTCATGATGTTA 59.123 29.630 17.03 8.90 0.00 2.41
5124 6677 0.390340 TCTGTCAGATGTGCTTCGGC 60.390 55.000 0.00 0.00 42.19 5.54
5132 6685 4.465512 GTGCTTCGGCGTGCCATG 62.466 66.667 20.20 1.21 45.37 3.66
5416 6977 2.501723 ACCAATACTTCAGGAGATGCGT 59.498 45.455 0.00 0.00 0.00 5.24
5450 7011 2.032030 CGTGTCTCTCAAATGCGGTTTT 60.032 45.455 0.00 0.00 0.00 2.43
5613 7177 4.040339 TCAATTGAGTAAGTGCACTCCAGA 59.960 41.667 21.95 3.04 43.63 3.86
6311 7878 9.008965 TCACATCTGCTTACAGCTTTTTATTTA 57.991 29.630 0.00 0.00 44.10 1.40
6995 8775 5.765182 CACATTTTTCACTTGTACTCCCTCT 59.235 40.000 0.00 0.00 0.00 3.69
7014 8794 9.454859 CTCCCTCTGTTTCTAAATATGTCTTTT 57.545 33.333 0.00 0.00 0.00 2.27
7239 9019 6.466470 GGACTCCTTATAGCAATGGATCCTTT 60.466 42.308 14.23 10.41 0.00 3.11
7343 9124 9.979578 ACTGTTGAAATTACAAATTATGCTTCA 57.020 25.926 0.00 0.00 0.00 3.02
7447 9228 6.214412 ACTTGATTGTAGGAGGAGATTTGACT 59.786 38.462 0.00 0.00 0.00 3.41
7454 9235 2.430465 GAGGAGATTTGACTGCAGCAA 58.570 47.619 15.27 15.94 0.00 3.91
7459 9240 1.266718 GATTTGACTGCAGCAACCGAA 59.733 47.619 15.27 7.33 0.00 4.30
7592 9373 4.497966 CGTACGCTTCTTCGATCACATTTA 59.502 41.667 0.52 0.00 0.00 1.40
7678 9459 4.045104 CGCTGCAGATTTTACGATACTCT 58.955 43.478 20.43 0.00 0.00 3.24
7839 9623 5.523188 TCTTTTTGCTGAAAATGCGATGTTT 59.477 32.000 0.00 0.00 36.68 2.83
7847 9631 4.517075 TGAAAATGCGATGTTTGTGGTCTA 59.483 37.500 0.00 0.00 0.00 2.59
8013 9948 6.827586 TTGAGCGAGGTTTTTACCATTAAT 57.172 33.333 0.00 0.00 0.00 1.40
8015 9950 7.222000 TGAGCGAGGTTTTTACCATTAATTT 57.778 32.000 0.00 0.00 0.00 1.82
8016 9951 8.338072 TGAGCGAGGTTTTTACCATTAATTTA 57.662 30.769 0.00 0.00 0.00 1.40
8077 10133 8.750416 GCTCTGCATCACATATATTCTAATACG 58.250 37.037 0.00 0.00 0.00 3.06
8154 10237 3.271729 GCCTCTACCTTAAACAGAAGCC 58.728 50.000 0.00 0.00 0.00 4.35
8178 10261 0.756294 ATGACAGTGACGGTGACCAA 59.244 50.000 1.11 0.00 0.00 3.67
8189 10272 0.454196 GGTGACCAACAACGTTTGCT 59.546 50.000 0.00 0.00 0.00 3.91
8194 10277 0.596082 CCAACAACGTTTGCTAGGGG 59.404 55.000 0.00 0.00 0.00 4.79
8205 10288 0.323360 TGCTAGGGGTGACATTTGCC 60.323 55.000 0.00 0.00 0.00 4.52
8213 10296 1.269448 GGTGACATTTGCCAACGATGT 59.731 47.619 0.00 0.00 36.76 3.06
8223 10306 2.421775 TGCCAACGATGTTCGCATTTAT 59.578 40.909 0.00 0.00 45.12 1.40
8225 10308 3.617669 CCAACGATGTTCGCATTTATCC 58.382 45.455 0.00 0.00 45.12 2.59
8246 10330 9.998752 TTATCCTGGATTTATTTAGGGTTTTCA 57.001 29.630 15.55 0.00 0.00 2.69
8278 10362 0.389166 CAGTGGCAGGAGACGTTCTC 60.389 60.000 0.00 0.00 42.66 2.87
8299 10383 1.713597 TCGACTACGAAGCGTCTACA 58.286 50.000 0.00 0.00 45.74 2.74
8300 10384 1.657594 TCGACTACGAAGCGTCTACAG 59.342 52.381 0.00 0.00 45.74 2.74
8308 10392 2.243407 GAAGCGTCTACAGTGACTTCG 58.757 52.381 0.00 0.00 35.00 3.79
8315 10399 5.118203 GCGTCTACAGTGACTTCGTAAAATT 59.882 40.000 0.00 0.00 35.00 1.82
8334 10418 9.971922 GTAAAATTTTAAGATGATATGCTGGCT 57.028 29.630 12.14 0.00 0.00 4.75
8336 10420 5.929697 TTTTAAGATGATATGCTGGCTCG 57.070 39.130 0.00 0.00 0.00 5.03
8352 10436 1.303398 TCGGTCTCTCGAAGGTGCT 60.303 57.895 0.00 0.00 36.12 4.40
8365 10449 3.511540 CGAAGGTGCTCATAGGGATATGA 59.488 47.826 0.00 0.00 35.40 2.15
8366 10450 4.021104 CGAAGGTGCTCATAGGGATATGAA 60.021 45.833 0.14 0.00 36.18 2.57
8370 10454 3.999663 GTGCTCATAGGGATATGAAGTGC 59.000 47.826 0.14 1.55 36.18 4.40
8376 10460 1.555075 AGGGATATGAAGTGCGTGTGT 59.445 47.619 0.00 0.00 0.00 3.72
8389 10473 1.999048 CGTGTGTGCGTTTATAGGGA 58.001 50.000 0.00 0.00 0.00 4.20
8392 10476 2.612212 GTGTGTGCGTTTATAGGGATGG 59.388 50.000 0.00 0.00 0.00 3.51
8399 10483 6.211785 TGTGCGTTTATAGGGATGGATGTATA 59.788 38.462 0.00 0.00 0.00 1.47
8403 10487 7.500992 CGTTTATAGGGATGGATGTATATGCT 58.499 38.462 0.00 0.00 0.00 3.79
8416 10500 8.860088 TGGATGTATATGCTTATATATGAGCGT 58.140 33.333 23.18 23.18 41.77 5.07
8471 10555 4.094146 ACGCTACGAGTTTCTAACTACTCC 59.906 45.833 0.00 0.00 43.03 3.85
8472 10556 4.495514 CGCTACGAGTTTCTAACTACTCCC 60.496 50.000 0.00 0.00 43.03 4.30
8474 10558 5.220835 GCTACGAGTTTCTAACTACTCCCTC 60.221 48.000 0.00 0.00 43.03 4.30
8476 10560 3.065095 CGAGTTTCTAACTACTCCCTCCG 59.935 52.174 0.00 0.00 43.03 4.63
8487 10571 6.462552 ACTACTCCCTCCGTTTCTAAATAC 57.537 41.667 0.00 0.00 0.00 1.89
8492 10576 6.117975 TCCCTCCGTTTCTAAATACAAGTT 57.882 37.500 0.00 0.00 0.00 2.66
8592 10706 6.578545 CACCAACACAATTAAGATGTTCTTCG 59.421 38.462 0.00 0.00 37.89 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.811190 TCCGATAACAAATCTCCCTCAAAA 58.189 37.500 0.00 0.00 0.00 2.44
1 2 5.428253 CTCCGATAACAAATCTCCCTCAAA 58.572 41.667 0.00 0.00 0.00 2.69
2 3 4.683400 GCTCCGATAACAAATCTCCCTCAA 60.683 45.833 0.00 0.00 0.00 3.02
3 4 3.181465 GCTCCGATAACAAATCTCCCTCA 60.181 47.826 0.00 0.00 0.00 3.86
4 5 3.394719 GCTCCGATAACAAATCTCCCTC 58.605 50.000 0.00 0.00 0.00 4.30
62 63 8.568794 GCTCATGGGTTAATTTTTATCTAGACC 58.431 37.037 0.00 0.00 0.00 3.85
291 374 8.579850 TGATCAGGTTTCTATTGCATAGTTTT 57.420 30.769 0.00 0.00 34.47 2.43
307 390 2.558795 CGATCCGGAGTATGATCAGGTT 59.441 50.000 11.34 0.00 36.13 3.50
521 1269 5.045432 ACTGGGACATCGGTATTTTAGGAAA 60.045 40.000 0.00 0.00 38.20 3.13
522 1270 4.472108 ACTGGGACATCGGTATTTTAGGAA 59.528 41.667 0.00 0.00 38.20 3.36
523 1271 4.035112 ACTGGGACATCGGTATTTTAGGA 58.965 43.478 0.00 0.00 38.20 2.94
567 1840 5.989777 CAGAAGAAACTCGAAACTTCCCTAA 59.010 40.000 13.17 0.00 39.33 2.69
568 1841 5.303589 TCAGAAGAAACTCGAAACTTCCCTA 59.696 40.000 13.17 2.42 39.33 3.53
573 1846 7.213678 AGAATCTCAGAAGAAACTCGAAACTT 58.786 34.615 0.00 0.00 34.49 2.66
576 1849 7.316640 CCTAGAATCTCAGAAGAAACTCGAAA 58.683 38.462 0.00 0.00 34.49 3.46
580 1853 5.105146 TGGCCTAGAATCTCAGAAGAAACTC 60.105 44.000 3.32 0.00 34.49 3.01
582 1855 5.091261 TGGCCTAGAATCTCAGAAGAAAC 57.909 43.478 3.32 0.00 34.49 2.78
584 1857 3.708631 CCTGGCCTAGAATCTCAGAAGAA 59.291 47.826 3.32 0.00 34.49 2.52
586 1859 2.224257 GCCTGGCCTAGAATCTCAGAAG 60.224 54.545 7.66 0.00 0.00 2.85
594 1867 0.259938 CCCAAAGCCTGGCCTAGAAT 59.740 55.000 16.57 0.00 44.90 2.40
708 1989 8.674925 TGGTAAAAGGAATTTCTAGGAGTAGA 57.325 34.615 0.00 0.00 33.12 2.59
709 1990 9.907229 AATGGTAAAAGGAATTTCTAGGAGTAG 57.093 33.333 0.00 0.00 32.27 2.57
710 1991 9.901172 GAATGGTAAAAGGAATTTCTAGGAGTA 57.099 33.333 0.00 0.00 32.27 2.59
712 1993 7.467403 GCGAATGGTAAAAGGAATTTCTAGGAG 60.467 40.741 0.00 0.00 32.27 3.69
713 1994 6.317893 GCGAATGGTAAAAGGAATTTCTAGGA 59.682 38.462 0.00 0.00 32.27 2.94
953 2293 3.170810 CTCTCGGTCTACTCGCGCC 62.171 68.421 0.00 0.00 0.00 6.53
1192 2538 1.408453 GGAGACCGTCCTAATGGGGG 61.408 65.000 0.00 0.00 42.99 5.40
1214 2560 0.591170 AATTCGACCAACTGCAACCG 59.409 50.000 0.00 0.00 0.00 4.44
1223 2569 1.536766 CAGAGCAAGCAATTCGACCAA 59.463 47.619 0.00 0.00 0.00 3.67
1251 2597 1.883021 GAATTCCCAGCCCAACACG 59.117 57.895 0.00 0.00 0.00 4.49
1263 2609 0.804989 CTCACAGGCAACCGAATTCC 59.195 55.000 0.00 0.00 37.17 3.01
1276 2622 1.561643 TCCCAGGTAAGCTCTCACAG 58.438 55.000 0.00 0.00 0.00 3.66
1353 2699 5.007430 CGAGCAGCATTCTCAAACTAATCAT 59.993 40.000 0.00 0.00 0.00 2.45
1365 2713 0.108424 GACAGGACGAGCAGCATTCT 60.108 55.000 0.00 0.00 0.00 2.40
1417 2765 7.673641 AGGTAATCTCATCTCAAATCAGAGT 57.326 36.000 0.00 0.00 36.97 3.24
1418 2766 9.695526 CTTAGGTAATCTCATCTCAAATCAGAG 57.304 37.037 0.00 0.00 36.97 3.35
1439 2787 2.154462 CAAACACAGACAGCCCTTAGG 58.846 52.381 0.00 0.00 0.00 2.69
1546 2894 3.977427 CATGATTCATGTGAGCCCATTG 58.023 45.455 16.93 0.00 37.12 2.82
1580 2928 4.481463 ACAAACCGCATATGTAGCAAAAC 58.519 39.130 4.29 0.00 0.00 2.43
1616 2964 3.394674 TTGCGAGTAATCAGTGTTCCA 57.605 42.857 0.00 0.00 0.00 3.53
1716 3064 7.336679 TGTGCTTGCACTGACAATATTACTAAT 59.663 33.333 23.53 0.00 0.00 1.73
1740 3088 4.054780 TCAACTCGCAGTAGAAGTTTGT 57.945 40.909 0.00 0.00 0.00 2.83
1985 3333 3.206150 GTCACTCTTTTGCACTTCAGGA 58.794 45.455 0.00 0.00 0.00 3.86
2000 3348 9.482627 CCTGATAAATAGGTTATTCTGTCACTC 57.517 37.037 0.00 0.00 32.26 3.51
2043 3391 6.411376 TGTTGAGTTTCTTCTTAGTTGACCA 58.589 36.000 0.00 0.00 0.00 4.02
2052 3400 6.276091 GGATGCTTTTGTTGAGTTTCTTCTT 58.724 36.000 0.00 0.00 0.00 2.52
2674 4053 6.798482 ACACATGCAAATGATGATAAATCGT 58.202 32.000 7.51 0.00 0.00 3.73
2708 4106 7.083875 TCGAATTACCAATTTGGAATGAGAC 57.916 36.000 22.19 6.19 40.96 3.36
2842 4242 9.140874 GGAGGATTTCATTAAGATCTCCATTTT 57.859 33.333 0.00 0.00 32.35 1.82
3661 5062 4.334203 ACTTGATGTGTACAAAGCAACGAA 59.666 37.500 12.67 0.00 0.00 3.85
3697 5098 7.908601 GCTATTTTACTGTAGCGCACTATTTTT 59.091 33.333 11.47 0.00 34.60 1.94
3698 5099 7.407337 GCTATTTTACTGTAGCGCACTATTTT 58.593 34.615 11.47 0.00 34.60 1.82
3699 5100 6.945072 GCTATTTTACTGTAGCGCACTATTT 58.055 36.000 11.47 0.00 34.60 1.40
3700 5101 6.526566 GCTATTTTACTGTAGCGCACTATT 57.473 37.500 11.47 0.00 34.60 1.73
3708 5109 2.218075 GTCGGCGCTATTTTACTGTAGC 59.782 50.000 7.64 0.00 39.86 3.58
3709 5110 2.793232 GGTCGGCGCTATTTTACTGTAG 59.207 50.000 7.64 0.00 0.00 2.74
3710 5111 2.428171 AGGTCGGCGCTATTTTACTGTA 59.572 45.455 7.64 0.00 0.00 2.74
3711 5112 1.206371 AGGTCGGCGCTATTTTACTGT 59.794 47.619 7.64 0.00 0.00 3.55
3712 5113 1.859080 GAGGTCGGCGCTATTTTACTG 59.141 52.381 7.64 0.00 0.00 2.74
3713 5114 1.479323 TGAGGTCGGCGCTATTTTACT 59.521 47.619 7.64 0.00 0.00 2.24
3714 5115 1.930567 TGAGGTCGGCGCTATTTTAC 58.069 50.000 7.64 0.00 0.00 2.01
3715 5116 2.676632 TTGAGGTCGGCGCTATTTTA 57.323 45.000 7.64 0.00 0.00 1.52
3716 5117 1.816074 TTTGAGGTCGGCGCTATTTT 58.184 45.000 7.64 0.00 0.00 1.82
3717 5118 1.816074 TTTTGAGGTCGGCGCTATTT 58.184 45.000 7.64 0.00 0.00 1.40
3718 5119 2.038387 ATTTTGAGGTCGGCGCTATT 57.962 45.000 7.64 0.00 0.00 1.73
3719 5120 2.480845 GTATTTTGAGGTCGGCGCTAT 58.519 47.619 7.64 0.00 0.00 2.97
3720 5121 1.799917 CGTATTTTGAGGTCGGCGCTA 60.800 52.381 7.64 0.00 0.00 4.26
3721 5122 1.082117 CGTATTTTGAGGTCGGCGCT 61.082 55.000 7.64 0.00 0.00 5.92
3722 5123 1.347221 CGTATTTTGAGGTCGGCGC 59.653 57.895 0.00 0.00 0.00 6.53
3723 5124 1.082117 AGCGTATTTTGAGGTCGGCG 61.082 55.000 0.00 0.00 0.00 6.46
3724 5125 1.930567 TAGCGTATTTTGAGGTCGGC 58.069 50.000 0.00 0.00 0.00 5.54
3725 5126 4.150098 GCTAATAGCGTATTTTGAGGTCGG 59.850 45.833 0.00 0.00 0.00 4.79
3726 5127 5.251999 GCTAATAGCGTATTTTGAGGTCG 57.748 43.478 0.00 0.00 0.00 4.79
3761 5162 3.102276 CTCGCTAATAGCACGCTATAGC 58.898 50.000 15.09 15.09 42.58 2.97
3762 5163 4.142881 TGTCTCGCTAATAGCACGCTATAG 60.143 45.833 13.15 10.32 42.58 1.31
3763 5164 3.749609 TGTCTCGCTAATAGCACGCTATA 59.250 43.478 13.15 1.16 42.58 1.31
3764 5165 2.552743 TGTCTCGCTAATAGCACGCTAT 59.447 45.455 13.15 5.72 42.58 2.97
3765 5166 1.944709 TGTCTCGCTAATAGCACGCTA 59.055 47.619 13.15 0.39 42.58 4.26
3766 5167 0.738975 TGTCTCGCTAATAGCACGCT 59.261 50.000 13.15 0.00 42.58 5.07
3767 5168 1.772182 ATGTCTCGCTAATAGCACGC 58.228 50.000 13.15 0.19 42.58 5.34
3768 5169 7.742019 AAATATATGTCTCGCTAATAGCACG 57.258 36.000 13.15 2.42 42.58 5.34
3769 5170 8.747666 GCTAAATATATGTCTCGCTAATAGCAC 58.252 37.037 13.15 3.79 42.58 4.40
3770 5171 7.644157 CGCTAAATATATGTCTCGCTAATAGCA 59.356 37.037 13.15 0.00 42.58 3.49
3771 5172 7.856398 TCGCTAAATATATGTCTCGCTAATAGC 59.144 37.037 1.41 1.41 38.02 2.97
3772 5173 9.376171 CTCGCTAAATATATGTCTCGCTAATAG 57.624 37.037 0.00 0.00 0.00 1.73
3773 5174 8.343366 CCTCGCTAAATATATGTCTCGCTAATA 58.657 37.037 0.00 0.00 0.00 0.98
3774 5175 7.197017 CCTCGCTAAATATATGTCTCGCTAAT 58.803 38.462 0.00 0.00 0.00 1.73
3775 5176 6.552629 CCTCGCTAAATATATGTCTCGCTAA 58.447 40.000 0.00 0.00 0.00 3.09
3776 5177 5.448768 GCCTCGCTAAATATATGTCTCGCTA 60.449 44.000 0.00 0.00 0.00 4.26
3777 5178 4.675671 GCCTCGCTAAATATATGTCTCGCT 60.676 45.833 0.00 0.00 0.00 4.93
3778 5179 3.548268 GCCTCGCTAAATATATGTCTCGC 59.452 47.826 0.00 0.00 0.00 5.03
3779 5180 4.733850 TGCCTCGCTAAATATATGTCTCG 58.266 43.478 0.00 0.00 0.00 4.04
3780 5181 7.547370 AGAATTGCCTCGCTAAATATATGTCTC 59.453 37.037 0.00 0.00 0.00 3.36
3781 5182 7.390027 AGAATTGCCTCGCTAAATATATGTCT 58.610 34.615 0.00 0.00 0.00 3.41
3782 5183 7.331934 TGAGAATTGCCTCGCTAAATATATGTC 59.668 37.037 0.00 0.00 35.99 3.06
3783 5184 7.161404 TGAGAATTGCCTCGCTAAATATATGT 58.839 34.615 0.00 0.00 35.99 2.29
3784 5185 7.601073 TGAGAATTGCCTCGCTAAATATATG 57.399 36.000 0.00 0.00 35.99 1.78
3785 5186 8.798859 ATTGAGAATTGCCTCGCTAAATATAT 57.201 30.769 0.00 0.00 35.99 0.86
3786 5187 9.151471 GTATTGAGAATTGCCTCGCTAAATATA 57.849 33.333 0.00 0.00 35.99 0.86
3787 5188 7.148573 CGTATTGAGAATTGCCTCGCTAAATAT 60.149 37.037 0.00 0.00 35.99 1.28
3788 5189 6.145534 CGTATTGAGAATTGCCTCGCTAAATA 59.854 38.462 0.00 0.00 35.99 1.40
3789 5190 5.050091 CGTATTGAGAATTGCCTCGCTAAAT 60.050 40.000 0.00 0.00 35.99 1.40
3790 5191 4.270084 CGTATTGAGAATTGCCTCGCTAAA 59.730 41.667 0.00 0.00 35.99 1.85
3791 5192 3.802139 CGTATTGAGAATTGCCTCGCTAA 59.198 43.478 0.00 0.00 35.99 3.09
3792 5193 3.381045 CGTATTGAGAATTGCCTCGCTA 58.619 45.455 0.00 0.00 35.99 4.26
3793 5194 2.205074 CGTATTGAGAATTGCCTCGCT 58.795 47.619 0.00 0.00 35.99 4.93
3794 5195 1.333258 GCGTATTGAGAATTGCCTCGC 60.333 52.381 0.00 0.00 35.99 5.03
3795 5196 2.205074 AGCGTATTGAGAATTGCCTCG 58.795 47.619 0.00 0.00 35.99 4.63
3796 5197 5.062809 GCTATAGCGTATTGAGAATTGCCTC 59.937 44.000 9.40 0.00 0.00 4.70
3797 5198 4.932200 GCTATAGCGTATTGAGAATTGCCT 59.068 41.667 9.40 0.00 0.00 4.75
3798 5199 5.209944 GCTATAGCGTATTGAGAATTGCC 57.790 43.478 9.40 0.00 0.00 4.52
3829 5230 7.158697 TGCTACTGCTAATACTCACTGAAAAA 58.841 34.615 0.00 0.00 40.48 1.94
3830 5231 6.697395 TGCTACTGCTAATACTCACTGAAAA 58.303 36.000 0.00 0.00 40.48 2.29
3831 5232 6.280855 TGCTACTGCTAATACTCACTGAAA 57.719 37.500 0.00 0.00 40.48 2.69
3832 5233 5.914898 TGCTACTGCTAATACTCACTGAA 57.085 39.130 0.00 0.00 40.48 3.02
3833 5234 6.294231 GCTATGCTACTGCTAATACTCACTGA 60.294 42.308 0.00 0.00 40.48 3.41
3834 5235 5.861251 GCTATGCTACTGCTAATACTCACTG 59.139 44.000 0.00 0.00 40.48 3.66
3835 5236 5.536538 TGCTATGCTACTGCTAATACTCACT 59.463 40.000 0.00 0.00 40.48 3.41
3836 5237 5.773575 TGCTATGCTACTGCTAATACTCAC 58.226 41.667 0.00 0.00 40.48 3.51
3837 5238 6.393171 CATGCTATGCTACTGCTAATACTCA 58.607 40.000 0.00 0.00 40.48 3.41
3838 5239 6.884096 CATGCTATGCTACTGCTAATACTC 57.116 41.667 0.00 0.00 40.48 2.59
3878 5279 6.182507 ACAGGAGGAAAACAATACTGTACA 57.817 37.500 0.00 0.00 36.09 2.90
3925 5326 2.224378 GCTGCTATGGAACTGCTGGATA 60.224 50.000 0.00 0.00 0.00 2.59
4007 5408 6.479972 TTAATGGGGGAGTATATATGCTCG 57.520 41.667 20.41 0.00 39.96 5.03
4084 5487 8.547481 AATGAACTAGGGAAAAAGGAAGAAAA 57.453 30.769 0.00 0.00 0.00 2.29
4120 5523 9.162764 AGCAGTGTTTAGTTATAAATGTCGAAT 57.837 29.630 0.00 0.00 33.57 3.34
4236 5763 5.590530 AAGATGTTACTTTGTTTGCCACA 57.409 34.783 0.00 0.00 0.00 4.17
4255 5782 7.504574 TGTTACTCCGTCCATTCAGATATAAGA 59.495 37.037 0.00 0.00 0.00 2.10
4260 5787 5.198207 TCTGTTACTCCGTCCATTCAGATA 58.802 41.667 0.00 0.00 0.00 1.98
4359 5888 4.172232 ATGAGCTCCCGGGCCCTA 62.172 66.667 22.43 3.94 0.00 3.53
4445 5998 1.553248 TGTATTGTGGAACGGAGGGAG 59.447 52.381 0.00 0.00 42.39 4.30
4446 5999 1.646912 TGTATTGTGGAACGGAGGGA 58.353 50.000 0.00 0.00 42.39 4.20
4447 6000 2.288666 CATGTATTGTGGAACGGAGGG 58.711 52.381 0.00 0.00 42.39 4.30
4448 6001 1.670811 GCATGTATTGTGGAACGGAGG 59.329 52.381 0.00 0.00 42.39 4.30
4449 6002 2.632377 AGCATGTATTGTGGAACGGAG 58.368 47.619 0.00 0.00 42.39 4.63
4450 6003 2.779755 AGCATGTATTGTGGAACGGA 57.220 45.000 0.00 0.00 42.39 4.69
4451 6004 3.440173 AGAAAGCATGTATTGTGGAACGG 59.560 43.478 0.00 0.00 42.39 4.44
4452 6005 4.685169 AGAAAGCATGTATTGTGGAACG 57.315 40.909 0.00 0.00 42.39 3.95
4453 6006 8.028938 ACAAATAGAAAGCATGTATTGTGGAAC 58.971 33.333 0.00 0.00 37.35 3.62
4454 6007 8.121305 ACAAATAGAAAGCATGTATTGTGGAA 57.879 30.769 0.00 0.00 0.00 3.53
4455 6008 7.392953 TGACAAATAGAAAGCATGTATTGTGGA 59.607 33.333 0.00 0.00 30.58 4.02
4456 6009 7.537715 TGACAAATAGAAAGCATGTATTGTGG 58.462 34.615 0.00 0.00 30.58 4.17
4457 6010 8.969121 TTGACAAATAGAAAGCATGTATTGTG 57.031 30.769 0.00 0.00 30.58 3.33
4458 6011 9.979578 TTTTGACAAATAGAAAGCATGTATTGT 57.020 25.926 0.50 0.00 32.89 2.71
4510 6063 9.787435 TGTCCAAAAATGGATGTACCTATATAC 57.213 33.333 0.19 0.00 40.51 1.47
4512 6065 9.707957 TTTGTCCAAAAATGGATGTACCTATAT 57.292 29.630 0.19 0.00 40.51 0.86
4513 6066 9.707957 ATTTGTCCAAAAATGGATGTACCTATA 57.292 29.630 0.19 0.00 40.51 1.31
4514 6067 8.477256 CATTTGTCCAAAAATGGATGTACCTAT 58.523 33.333 0.19 0.00 41.71 2.57
4515 6068 7.835822 CATTTGTCCAAAAATGGATGTACCTA 58.164 34.615 0.19 0.00 41.71 3.08
4516 6069 6.700352 CATTTGTCCAAAAATGGATGTACCT 58.300 36.000 0.19 0.00 41.71 3.08
4517 6070 6.966435 CATTTGTCCAAAAATGGATGTACC 57.034 37.500 0.19 0.00 41.71 3.34
4525 6078 6.762661 ACTTGACTTCCATTTGTCCAAAAATG 59.237 34.615 0.00 3.25 43.94 2.32
4526 6079 6.888105 ACTTGACTTCCATTTGTCCAAAAAT 58.112 32.000 0.00 0.00 33.56 1.82
4527 6080 6.293004 ACTTGACTTCCATTTGTCCAAAAA 57.707 33.333 0.00 0.00 33.56 1.94
4528 6081 5.930837 ACTTGACTTCCATTTGTCCAAAA 57.069 34.783 0.00 0.00 33.56 2.44
4529 6082 7.595819 AATACTTGACTTCCATTTGTCCAAA 57.404 32.000 0.00 0.00 32.67 3.28
4530 6083 7.595819 AAATACTTGACTTCCATTTGTCCAA 57.404 32.000 0.00 0.00 32.67 3.53
4531 6084 7.432869 CAAAATACTTGACTTCCATTTGTCCA 58.567 34.615 0.00 0.00 32.67 4.02
4532 6085 6.868339 CCAAAATACTTGACTTCCATTTGTCC 59.132 38.462 0.00 0.00 32.67 4.02
4533 6086 7.657336 TCCAAAATACTTGACTTCCATTTGTC 58.343 34.615 0.00 0.00 0.00 3.18
4534 6087 7.595819 TCCAAAATACTTGACTTCCATTTGT 57.404 32.000 0.00 0.00 0.00 2.83
4535 6088 8.359642 TCTTCCAAAATACTTGACTTCCATTTG 58.640 33.333 0.00 0.00 0.00 2.32
4536 6089 8.477419 TCTTCCAAAATACTTGACTTCCATTT 57.523 30.769 0.00 0.00 0.00 2.32
4537 6090 7.944554 TCTCTTCCAAAATACTTGACTTCCATT 59.055 33.333 0.00 0.00 0.00 3.16
4538 6091 7.461749 TCTCTTCCAAAATACTTGACTTCCAT 58.538 34.615 0.00 0.00 0.00 3.41
4539 6092 6.837312 TCTCTTCCAAAATACTTGACTTCCA 58.163 36.000 0.00 0.00 0.00 3.53
4540 6093 6.372937 CCTCTCTTCCAAAATACTTGACTTCC 59.627 42.308 0.00 0.00 0.00 3.46
4541 6094 6.372937 CCCTCTCTTCCAAAATACTTGACTTC 59.627 42.308 0.00 0.00 0.00 3.01
4542 6095 6.044404 TCCCTCTCTTCCAAAATACTTGACTT 59.956 38.462 0.00 0.00 0.00 3.01
4543 6096 5.548056 TCCCTCTCTTCCAAAATACTTGACT 59.452 40.000 0.00 0.00 0.00 3.41
4544 6097 5.805728 TCCCTCTCTTCCAAAATACTTGAC 58.194 41.667 0.00 0.00 0.00 3.18
4545 6098 5.548056 ACTCCCTCTCTTCCAAAATACTTGA 59.452 40.000 0.00 0.00 0.00 3.02
4546 6099 5.810095 ACTCCCTCTCTTCCAAAATACTTG 58.190 41.667 0.00 0.00 0.00 3.16
4547 6100 7.182930 ACATACTCCCTCTCTTCCAAAATACTT 59.817 37.037 0.00 0.00 0.00 2.24
4548 6101 6.674419 ACATACTCCCTCTCTTCCAAAATACT 59.326 38.462 0.00 0.00 0.00 2.12
4549 6102 6.890293 ACATACTCCCTCTCTTCCAAAATAC 58.110 40.000 0.00 0.00 0.00 1.89
4550 6103 7.510675 AACATACTCCCTCTCTTCCAAAATA 57.489 36.000 0.00 0.00 0.00 1.40
4551 6104 6.394345 AACATACTCCCTCTCTTCCAAAAT 57.606 37.500 0.00 0.00 0.00 1.82
4552 6105 5.843019 AACATACTCCCTCTCTTCCAAAA 57.157 39.130 0.00 0.00 0.00 2.44
4553 6106 5.548056 AGAAACATACTCCCTCTCTTCCAAA 59.452 40.000 0.00 0.00 0.00 3.28
4554 6107 5.094387 AGAAACATACTCCCTCTCTTCCAA 58.906 41.667 0.00 0.00 0.00 3.53
4555 6108 4.689062 AGAAACATACTCCCTCTCTTCCA 58.311 43.478 0.00 0.00 0.00 3.53
4556 6109 5.187967 TGAAGAAACATACTCCCTCTCTTCC 59.812 44.000 6.49 0.00 37.55 3.46
4557 6110 6.071051 ACTGAAGAAACATACTCCCTCTCTTC 60.071 42.308 0.00 0.00 38.40 2.87
4558 6111 5.782845 ACTGAAGAAACATACTCCCTCTCTT 59.217 40.000 0.00 0.00 0.00 2.85
4559 6112 5.186797 CACTGAAGAAACATACTCCCTCTCT 59.813 44.000 0.00 0.00 0.00 3.10
4560 6113 5.186021 TCACTGAAGAAACATACTCCCTCTC 59.814 44.000 0.00 0.00 0.00 3.20
4561 6114 5.087323 TCACTGAAGAAACATACTCCCTCT 58.913 41.667 0.00 0.00 0.00 3.69
4562 6115 5.407407 TCACTGAAGAAACATACTCCCTC 57.593 43.478 0.00 0.00 0.00 4.30
4563 6116 5.485353 TCATCACTGAAGAAACATACTCCCT 59.515 40.000 0.00 0.00 0.00 4.20
4564 6117 5.734720 TCATCACTGAAGAAACATACTCCC 58.265 41.667 0.00 0.00 0.00 4.30
4565 6118 5.293079 GCTCATCACTGAAGAAACATACTCC 59.707 44.000 0.00 0.00 0.00 3.85
4566 6119 5.293079 GGCTCATCACTGAAGAAACATACTC 59.707 44.000 0.00 0.00 0.00 2.59
4567 6120 5.181748 GGCTCATCACTGAAGAAACATACT 58.818 41.667 0.00 0.00 0.00 2.12
4568 6121 4.937620 TGGCTCATCACTGAAGAAACATAC 59.062 41.667 0.00 0.00 0.00 2.39
4569 6122 5.164620 TGGCTCATCACTGAAGAAACATA 57.835 39.130 0.00 0.00 0.00 2.29
4570 6123 4.025040 TGGCTCATCACTGAAGAAACAT 57.975 40.909 0.00 0.00 0.00 2.71
4592 6145 8.292444 TGCTACCAATTTTACATCTAGCAAAT 57.708 30.769 0.00 0.00 33.83 2.32
4623 6176 8.655092 TCGTTTTCATGAAATTTCCAATAATGC 58.345 29.630 21.10 0.08 0.00 3.56
4692 6245 7.335627 AGAAATACCTGGATTGATCACGTTAA 58.664 34.615 0.00 0.00 0.00 2.01
4724 6277 6.920569 ACACTCGAAATTTTAACAGTCTGT 57.079 33.333 0.00 0.00 0.00 3.41
4725 6278 6.851330 GGAACACTCGAAATTTTAACAGTCTG 59.149 38.462 0.00 0.00 0.00 3.51
4726 6279 6.540914 TGGAACACTCGAAATTTTAACAGTCT 59.459 34.615 0.00 0.00 0.00 3.24
4765 6318 4.895224 ACGTCTACATGTACATCGACAT 57.105 40.909 17.65 6.57 40.78 3.06
4766 6319 4.154556 TCAACGTCTACATGTACATCGACA 59.845 41.667 17.65 3.23 0.00 4.35
4772 6325 4.521639 ACTCCTTCAACGTCTACATGTACA 59.478 41.667 0.08 0.00 0.00 2.90
4945 6498 7.889469 AGCAATCATCTGAAACTAAAACACAT 58.111 30.769 0.00 0.00 0.00 3.21
5416 6977 3.344515 AGAGACACGTGCTACTATCACA 58.655 45.455 17.22 0.00 34.27 3.58
5589 7153 4.713553 TGGAGTGCACTTACTCAATTGAA 58.286 39.130 22.65 0.00 46.97 2.69
5613 7177 9.268282 TCTAGTACCATGGTCTCTAAGAATTTT 57.732 33.333 23.76 0.00 0.00 1.82
6338 7905 8.366671 ACTATTACTTGAGTTTTCACACTGAC 57.633 34.615 0.00 0.00 31.71 3.51
7014 8794 9.494271 GCATGTAGTCCATATTGAAATCTCTAA 57.506 33.333 0.00 0.00 30.71 2.10
7039 8819 2.095059 ACATTCACTCATTTTGCTCCGC 60.095 45.455 0.00 0.00 0.00 5.54
7239 9019 3.760738 TCACTGATTGTAACCATGCCAA 58.239 40.909 0.00 0.00 0.00 4.52
7343 9124 5.083533 TGAAACCAGTTGCAACAGATTTT 57.916 34.783 30.11 22.03 0.00 1.82
7394 9175 5.101628 CACTCTGCTTATGAGAGACTCAAC 58.898 45.833 5.02 0.00 44.04 3.18
7447 9228 4.269523 AGGGCTTCGGTTGCTGCA 62.270 61.111 0.00 0.00 0.00 4.41
7454 9235 2.203788 TCCTGTCAGGGCTTCGGT 60.204 61.111 19.11 0.00 35.59 4.69
7615 9396 6.701400 TGCCAAATAGAAGAAAGAACAAAAGC 59.299 34.615 0.00 0.00 0.00 3.51
7678 9459 5.163457 TGCGACATGGTATAGAGAAACATGA 60.163 40.000 8.03 0.00 40.92 3.07
7839 9623 4.701663 GCAGCAGCTTAGACCACA 57.298 55.556 0.00 0.00 37.91 4.17
7865 9649 1.303282 CCCTCCCTGCAACCTTACC 59.697 63.158 0.00 0.00 0.00 2.85
8024 9959 8.564574 ACTGAATTAGAAACTCATGCGTTTAAA 58.435 29.630 13.51 11.26 37.24 1.52
8090 10146 8.686334 ACTTTGAAGAGCAAGTAGAAATGAAAA 58.314 29.630 0.00 0.00 37.87 2.29
8144 10200 5.769662 TCACTGTCATTTATGGCTTCTGTTT 59.230 36.000 0.00 0.00 32.56 2.83
8154 10237 3.370978 GGTCACCGTCACTGTCATTTATG 59.629 47.826 0.00 0.00 0.00 1.90
8178 10261 0.470766 TCACCCCTAGCAAACGTTGT 59.529 50.000 0.00 0.00 0.00 3.32
8189 10272 1.884497 CGTTGGCAAATGTCACCCCTA 60.884 52.381 0.00 0.00 0.00 3.53
8194 10277 2.704725 ACATCGTTGGCAAATGTCAC 57.295 45.000 10.92 0.00 0.00 3.67
8205 10288 4.274069 CAGGATAAATGCGAACATCGTTG 58.726 43.478 1.45 0.00 42.81 4.10
8213 10296 8.792633 CCTAAATAAATCCAGGATAAATGCGAA 58.207 33.333 1.02 0.00 0.00 4.70
8223 10306 7.094118 CGTTGAAAACCCTAAATAAATCCAGGA 60.094 37.037 0.00 0.00 46.28 3.86
8225 10308 7.822658 TCGTTGAAAACCCTAAATAAATCCAG 58.177 34.615 0.00 0.00 46.28 3.86
8246 10330 0.523072 GCCACTGAATGTGCATCGTT 59.477 50.000 0.00 0.00 44.92 3.85
8287 10371 2.243407 GAAGTCACTGTAGACGCTTCG 58.757 52.381 0.00 0.00 43.24 3.79
8290 10374 1.236628 ACGAAGTCACTGTAGACGCT 58.763 50.000 0.00 0.00 43.24 5.07
8291 10375 2.888513 TACGAAGTCACTGTAGACGC 57.111 50.000 0.00 0.00 43.93 5.19
8308 10392 9.971922 AGCCAGCATATCATCTTAAAATTTTAC 57.028 29.630 10.18 0.00 0.00 2.01
8315 10399 4.202357 ACCGAGCCAGCATATCATCTTAAA 60.202 41.667 0.00 0.00 0.00 1.52
8320 10404 1.274728 AGACCGAGCCAGCATATCATC 59.725 52.381 0.00 0.00 0.00 2.92
8332 10416 1.137825 CACCTTCGAGAGACCGAGC 59.862 63.158 0.00 0.00 41.84 5.03
8334 10418 1.303398 AGCACCTTCGAGAGACCGA 60.303 57.895 0.00 0.00 41.84 4.69
8336 10420 0.820871 ATGAGCACCTTCGAGAGACC 59.179 55.000 0.00 0.00 41.84 3.85
8352 10436 3.641436 ACACGCACTTCATATCCCTATGA 59.359 43.478 0.00 0.00 41.55 2.15
8365 10449 0.941542 ATAAACGCACACACGCACTT 59.058 45.000 0.00 0.00 36.19 3.16
8366 10450 1.724623 CTATAAACGCACACACGCACT 59.275 47.619 0.00 0.00 36.19 4.40
8370 10454 1.999048 TCCCTATAAACGCACACACG 58.001 50.000 0.00 0.00 39.50 4.49
8376 10460 5.755409 ATACATCCATCCCTATAAACGCA 57.245 39.130 0.00 0.00 0.00 5.24
8389 10473 9.866798 CGCTCATATATAAGCATATACATCCAT 57.133 33.333 8.60 0.00 38.45 3.41
8399 10483 4.690748 ACGCAAACGCTCATATATAAGCAT 59.309 37.500 8.60 0.00 45.53 3.79
8403 10487 8.605746 AGTAAAAACGCAAACGCTCATATATAA 58.394 29.630 0.00 0.00 45.53 0.98
8414 10498 6.739561 TTTTAACACAGTAAAAACGCAAACG 58.260 32.000 0.00 0.00 35.44 3.60
8440 10524 7.383300 AGTTAGAAACTCGTAGCGTTTTGTATT 59.617 33.333 0.00 0.00 45.99 1.89
8501 10585 9.930693 TTCCTTTCTAGTTCTTACTGAAATCTC 57.069 33.333 0.00 0.00 36.30 2.75
8503 10587 9.490379 TGTTCCTTTCTAGTTCTTACTGAAATC 57.510 33.333 0.00 0.00 36.30 2.17
8504 10588 9.495572 CTGTTCCTTTCTAGTTCTTACTGAAAT 57.504 33.333 0.00 0.00 36.30 2.17
8506 10590 6.929606 GCTGTTCCTTTCTAGTTCTTACTGAA 59.070 38.462 0.00 0.00 35.78 3.02
8507 10591 6.456501 GCTGTTCCTTTCTAGTTCTTACTGA 58.543 40.000 0.00 0.00 35.78 3.41
8508 10592 5.639931 GGCTGTTCCTTTCTAGTTCTTACTG 59.360 44.000 0.00 0.00 35.78 2.74
8509 10593 5.307196 TGGCTGTTCCTTTCTAGTTCTTACT 59.693 40.000 0.00 0.00 35.55 2.24
8510 10594 5.548406 TGGCTGTTCCTTTCTAGTTCTTAC 58.452 41.667 0.00 0.00 35.26 2.34
8511 10595 5.280011 CCTGGCTGTTCCTTTCTAGTTCTTA 60.280 44.000 0.00 0.00 35.26 2.10
8512 10596 4.505742 CCTGGCTGTTCCTTTCTAGTTCTT 60.506 45.833 0.00 0.00 35.26 2.52
8514 10598 3.008049 TCCTGGCTGTTCCTTTCTAGTTC 59.992 47.826 0.00 0.00 35.26 3.01
8515 10599 2.979678 TCCTGGCTGTTCCTTTCTAGTT 59.020 45.455 0.00 0.00 35.26 2.24
8524 10638 0.967380 CCAATGGTCCTGGCTGTTCC 60.967 60.000 0.00 0.00 0.00 3.62
8562 10676 4.171878 TCTTAATTGTGTTGGTGGTCCA 57.828 40.909 0.00 0.00 42.66 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.