Multiple sequence alignment - TraesCS2D01G527700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G527700 chr2D 100.000 2822 0 0 1 2822 615399548 615402369 0.000000e+00 5212.0
1 TraesCS2D01G527700 chr2B 84.196 2221 156 86 672 2755 749853587 749855749 0.000000e+00 1977.0
2 TraesCS2D01G527700 chr2B 91.667 360 12 7 1 354 749851703 749852050 1.520000e-132 483.0
3 TraesCS2D01G527700 chr2B 82.734 278 21 12 1095 1364 749853979 749854237 3.660000e-54 222.0
4 TraesCS2D01G527700 chr2B 90.141 71 7 0 1294 1364 749854224 749854294 2.990000e-15 93.5
5 TraesCS2D01G527700 chr2B 88.571 70 3 3 51 120 749850631 749850695 2.330000e-11 80.5
6 TraesCS2D01G527700 chr2A 86.082 1516 98 46 1291 2755 745408157 745409610 0.000000e+00 1526.0
7 TraesCS2D01G527700 chr2A 84.802 658 50 19 678 1292 745407535 745408185 1.440000e-172 616.0
8 TraesCS2D01G527700 chr2A 85.627 327 8 10 5 320 745407236 745407534 9.820000e-80 307.0
9 TraesCS2D01G527700 chr2A 84.568 162 13 5 1134 1295 745407970 745408119 1.750000e-32 150.0
10 TraesCS2D01G527700 chr4D 100.000 30 0 0 2793 2822 403575493 403575464 3.930000e-04 56.5
11 TraesCS2D01G527700 chr4D 100.000 28 0 0 2795 2822 389486718 389486691 5.000000e-03 52.8
12 TraesCS2D01G527700 chr3D 100.000 30 0 0 2793 2822 376169113 376169084 3.930000e-04 56.5
13 TraesCS2D01G527700 chr1B 100.000 29 0 0 2794 2822 575733886 575733914 1.000000e-03 54.7
14 TraesCS2D01G527700 chr7A 96.875 32 0 1 2791 2822 663180216 663180246 5.000000e-03 52.8
15 TraesCS2D01G527700 chr6D 100.000 28 0 0 2795 2822 134742887 134742914 5.000000e-03 52.8
16 TraesCS2D01G527700 chr6D 100.000 28 0 0 2795 2822 366707603 366707576 5.000000e-03 52.8
17 TraesCS2D01G527700 chr5D 100.000 28 0 0 2795 2822 543275687 543275714 5.000000e-03 52.8
18 TraesCS2D01G527700 chr5B 100.000 28 0 0 2795 2822 693162924 693162897 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G527700 chr2D 615399548 615402369 2821 False 5212.00 5212 100.00000 1 2822 1 chr2D.!!$F1 2821
1 TraesCS2D01G527700 chr2B 749850631 749855749 5118 False 571.20 1977 87.46180 1 2755 5 chr2B.!!$F1 2754
2 TraesCS2D01G527700 chr2A 745407236 745409610 2374 False 649.75 1526 85.26975 5 2755 4 chr2A.!!$F1 2750

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
636 2953 0.179936 AGTAGCATTCAGAGGCCTGC 59.82 55.0 12.0 7.27 40.2 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2198 4775 0.74845 AAAGACGAGACCACCGACAA 59.252 50.0 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 1145 5.123936 ACGCCTGGAATCTTACTTAAATCC 58.876 41.667 0.00 0.00 0.00 3.01
73 1146 4.211374 CGCCTGGAATCTTACTTAAATCCG 59.789 45.833 0.00 0.00 0.00 4.18
74 1147 5.365619 GCCTGGAATCTTACTTAAATCCGA 58.634 41.667 0.00 0.00 0.00 4.55
75 1148 5.998363 GCCTGGAATCTTACTTAAATCCGAT 59.002 40.000 0.00 0.00 0.00 4.18
76 1149 6.147985 GCCTGGAATCTTACTTAAATCCGATC 59.852 42.308 0.00 0.00 0.00 3.69
260 1346 4.033776 GCAGGTGGTGGCTGGCTA 62.034 66.667 2.00 0.00 0.00 3.93
261 1347 2.270205 CAGGTGGTGGCTGGCTAG 59.730 66.667 2.00 0.00 0.00 3.42
335 1429 1.589779 ACGGTTTTTCACGACGACTTC 59.410 47.619 0.00 0.00 0.00 3.01
336 1430 1.589320 CGGTTTTTCACGACGACTTCA 59.411 47.619 0.00 0.00 0.00 3.02
342 1436 0.742505 TCACGACGACTTCACAACCT 59.257 50.000 0.00 0.00 0.00 3.50
343 1437 1.135527 TCACGACGACTTCACAACCTT 59.864 47.619 0.00 0.00 0.00 3.50
349 1443 2.867975 ACGACTTCACAACCTTTTACCG 59.132 45.455 0.00 0.00 0.00 4.02
354 1448 1.698532 TCACAACCTTTTACCGCCCTA 59.301 47.619 0.00 0.00 0.00 3.53
355 1449 1.808343 CACAACCTTTTACCGCCCTAC 59.192 52.381 0.00 0.00 0.00 3.18
356 1450 1.271543 ACAACCTTTTACCGCCCTACC 60.272 52.381 0.00 0.00 0.00 3.18
357 1451 0.329261 AACCTTTTACCGCCCTACCC 59.671 55.000 0.00 0.00 0.00 3.69
358 1452 0.548439 ACCTTTTACCGCCCTACCCT 60.548 55.000 0.00 0.00 0.00 4.34
361 1455 1.558294 CTTTTACCGCCCTACCCTTCT 59.442 52.381 0.00 0.00 0.00 2.85
362 1456 1.660242 TTTACCGCCCTACCCTTCTT 58.340 50.000 0.00 0.00 0.00 2.52
363 1457 1.197812 TTACCGCCCTACCCTTCTTC 58.802 55.000 0.00 0.00 0.00 2.87
364 1458 0.337428 TACCGCCCTACCCTTCTTCT 59.663 55.000 0.00 0.00 0.00 2.85
365 1459 0.337428 ACCGCCCTACCCTTCTTCTA 59.663 55.000 0.00 0.00 0.00 2.10
366 1460 0.751452 CCGCCCTACCCTTCTTCTAC 59.249 60.000 0.00 0.00 0.00 2.59
367 1461 0.384669 CGCCCTACCCTTCTTCTACG 59.615 60.000 0.00 0.00 0.00 3.51
368 1462 0.751452 GCCCTACCCTTCTTCTACGG 59.249 60.000 0.00 0.00 0.00 4.02
369 1463 1.411041 CCCTACCCTTCTTCTACGGG 58.589 60.000 0.00 0.00 43.79 5.28
373 1467 3.834732 CCCTTCTTCTACGGGTGTG 57.165 57.895 0.00 0.00 33.16 3.82
374 1468 0.249398 CCCTTCTTCTACGGGTGTGG 59.751 60.000 0.00 0.00 33.16 4.17
375 1469 0.391263 CCTTCTTCTACGGGTGTGGC 60.391 60.000 0.00 0.00 0.00 5.01
376 1470 0.608640 CTTCTTCTACGGGTGTGGCT 59.391 55.000 0.00 0.00 0.00 4.75
378 1472 0.320374 TCTTCTACGGGTGTGGCTTG 59.680 55.000 0.00 0.00 0.00 4.01
379 1473 0.673644 CTTCTACGGGTGTGGCTTGG 60.674 60.000 0.00 0.00 0.00 3.61
380 1474 1.412453 TTCTACGGGTGTGGCTTGGT 61.412 55.000 0.00 0.00 0.00 3.67
382 1476 2.798148 CTACGGGTGTGGCTTGGTCC 62.798 65.000 0.00 0.00 0.00 4.46
385 1479 2.358737 GGTGTGGCTTGGTCCGAG 60.359 66.667 1.08 1.08 0.00 4.63
387 1481 1.296715 GTGTGGCTTGGTCCGAGAT 59.703 57.895 10.67 0.00 0.00 2.75
388 1482 0.741221 GTGTGGCTTGGTCCGAGATC 60.741 60.000 10.67 1.91 0.00 2.75
390 1484 1.112113 GTGGCTTGGTCCGAGATCTA 58.888 55.000 10.67 0.00 0.00 1.98
391 1485 1.480954 GTGGCTTGGTCCGAGATCTAA 59.519 52.381 10.67 0.00 0.00 2.10
392 1486 1.480954 TGGCTTGGTCCGAGATCTAAC 59.519 52.381 10.67 0.00 0.00 2.34
393 1487 1.202545 GGCTTGGTCCGAGATCTAACC 60.203 57.143 10.67 12.43 0.00 2.85
394 1488 1.480954 GCTTGGTCCGAGATCTAACCA 59.519 52.381 16.37 16.37 39.96 3.67
395 1489 2.093658 GCTTGGTCCGAGATCTAACCAA 60.094 50.000 24.54 24.54 46.65 3.67
396 1490 3.887621 TTGGTCCGAGATCTAACCAAG 57.112 47.619 23.29 2.98 44.62 3.61
397 1491 2.816411 TGGTCCGAGATCTAACCAAGT 58.184 47.619 17.48 0.00 38.80 3.16
398 1492 2.758979 TGGTCCGAGATCTAACCAAGTC 59.241 50.000 17.48 0.00 38.80 3.01
399 1493 3.025262 GGTCCGAGATCTAACCAAGTCT 58.975 50.000 13.84 0.00 0.00 3.24
400 1494 3.067040 GGTCCGAGATCTAACCAAGTCTC 59.933 52.174 13.84 0.00 33.00 3.36
401 1495 3.695060 GTCCGAGATCTAACCAAGTCTCA 59.305 47.826 0.00 0.00 34.58 3.27
402 1496 3.948473 TCCGAGATCTAACCAAGTCTCAG 59.052 47.826 0.00 0.00 34.58 3.35
403 1497 3.697045 CCGAGATCTAACCAAGTCTCAGT 59.303 47.826 0.00 0.00 34.58 3.41
404 1498 4.882427 CCGAGATCTAACCAAGTCTCAGTA 59.118 45.833 0.00 0.00 34.58 2.74
405 1499 5.357314 CCGAGATCTAACCAAGTCTCAGTAA 59.643 44.000 0.00 0.00 34.58 2.24
406 1500 6.127703 CCGAGATCTAACCAAGTCTCAGTAAA 60.128 42.308 0.00 0.00 34.58 2.01
407 1501 7.313646 CGAGATCTAACCAAGTCTCAGTAAAA 58.686 38.462 0.00 0.00 34.58 1.52
408 1502 7.976734 CGAGATCTAACCAAGTCTCAGTAAAAT 59.023 37.037 0.00 0.00 34.58 1.82
413 1507 9.485206 TCTAACCAAGTCTCAGTAAAATAACAC 57.515 33.333 0.00 0.00 0.00 3.32
414 1508 9.490379 CTAACCAAGTCTCAGTAAAATAACACT 57.510 33.333 0.00 0.00 0.00 3.55
416 1510 8.828688 ACCAAGTCTCAGTAAAATAACACTAC 57.171 34.615 0.00 0.00 0.00 2.73
417 1511 8.426489 ACCAAGTCTCAGTAAAATAACACTACA 58.574 33.333 0.00 0.00 0.00 2.74
418 1512 9.436957 CCAAGTCTCAGTAAAATAACACTACAT 57.563 33.333 0.00 0.00 0.00 2.29
420 1514 9.998106 AAGTCTCAGTAAAATAACACTACATGT 57.002 29.630 2.69 2.69 46.42 3.21
501 1703 9.956720 ATCAAATGAGACTTAACAAAGTTTCAG 57.043 29.630 14.36 4.73 43.94 3.02
503 1705 9.573133 CAAATGAGACTTAACAAAGTTTCAGTT 57.427 29.630 14.72 14.72 46.14 3.16
504 1706 9.573133 AAATGAGACTTAACAAAGTTTCAGTTG 57.427 29.630 17.87 0.00 44.68 3.16
506 1708 8.330466 TGAGACTTAACAAAGTTTCAGTTGAA 57.670 30.769 7.24 0.00 38.49 2.69
507 1709 8.956426 TGAGACTTAACAAAGTTTCAGTTGAAT 58.044 29.630 7.24 0.00 38.49 2.57
508 1710 9.788960 GAGACTTAACAAAGTTTCAGTTGAATT 57.211 29.630 4.46 0.00 34.93 2.17
509 1711 9.573133 AGACTTAACAAAGTTTCAGTTGAATTG 57.427 29.630 0.00 1.05 33.54 2.32
511 1713 9.353999 ACTTAACAAAGTTTCAGTTGAATTGAC 57.646 29.630 11.55 1.77 33.54 3.18
512 1714 9.573133 CTTAACAAAGTTTCAGTTGAATTGACT 57.427 29.630 11.55 3.68 33.54 3.41
513 1715 7.816945 AACAAAGTTTCAGTTGAATTGACTG 57.183 32.000 11.55 10.81 44.54 3.51
514 1716 6.332630 ACAAAGTTTCAGTTGAATTGACTGG 58.667 36.000 15.07 5.31 43.61 4.00
515 1717 6.152661 ACAAAGTTTCAGTTGAATTGACTGGA 59.847 34.615 15.07 6.98 43.61 3.86
516 1718 6.382869 AAGTTTCAGTTGAATTGACTGGAG 57.617 37.500 15.07 0.00 43.61 3.86
518 1720 5.529060 AGTTTCAGTTGAATTGACTGGAGAC 59.471 40.000 15.07 11.85 43.61 3.36
520 1722 3.648067 TCAGTTGAATTGACTGGAGACCT 59.352 43.478 15.07 0.00 43.61 3.85
521 1723 4.838423 TCAGTTGAATTGACTGGAGACCTA 59.162 41.667 15.07 0.00 43.61 3.08
522 1724 5.047021 TCAGTTGAATTGACTGGAGACCTAG 60.047 44.000 15.07 0.00 43.61 3.02
523 1725 3.895232 TGAATTGACTGGAGACCTAGC 57.105 47.619 0.00 0.00 0.00 3.42
524 1726 3.173151 TGAATTGACTGGAGACCTAGCA 58.827 45.455 0.00 0.00 0.00 3.49
525 1727 3.582647 TGAATTGACTGGAGACCTAGCAA 59.417 43.478 0.00 0.00 0.00 3.91
526 1728 3.902881 ATTGACTGGAGACCTAGCAAG 57.097 47.619 0.00 0.00 0.00 4.01
527 1729 2.604912 TGACTGGAGACCTAGCAAGA 57.395 50.000 0.00 0.00 0.00 3.02
528 1730 2.171840 TGACTGGAGACCTAGCAAGAC 58.828 52.381 0.00 0.00 0.00 3.01
529 1731 2.225142 TGACTGGAGACCTAGCAAGACT 60.225 50.000 0.00 0.00 0.00 3.24
530 1732 2.829120 GACTGGAGACCTAGCAAGACTT 59.171 50.000 0.00 0.00 0.00 3.01
531 1733 3.243724 ACTGGAGACCTAGCAAGACTTT 58.756 45.455 0.00 0.00 0.00 2.66
533 1735 4.249661 CTGGAGACCTAGCAAGACTTTTC 58.750 47.826 0.00 0.00 0.00 2.29
534 1736 3.904339 TGGAGACCTAGCAAGACTTTTCT 59.096 43.478 0.00 0.00 0.00 2.52
536 1738 4.932799 GGAGACCTAGCAAGACTTTTCTTC 59.067 45.833 0.00 0.00 40.34 2.87
538 1740 5.546526 AGACCTAGCAAGACTTTTCTTCTG 58.453 41.667 0.00 0.00 40.34 3.02
542 1744 4.564940 AGCAAGACTTTTCTTCTGCTTG 57.435 40.909 0.00 0.00 41.33 4.01
545 1747 4.868067 CAAGACTTTTCTTCTGCTTGCAT 58.132 39.130 0.00 0.00 40.34 3.96
548 1750 4.581824 AGACTTTTCTTCTGCTTGCATCAA 59.418 37.500 0.00 0.00 0.00 2.57
550 1752 4.098349 ACTTTTCTTCTGCTTGCATCAACA 59.902 37.500 0.00 0.00 0.00 3.33
559 2876 2.475187 GCTTGCATCAACACGTGAGATC 60.475 50.000 25.01 16.71 40.43 2.75
565 2882 1.191944 CAACACGTGAGATCGATCGG 58.808 55.000 25.01 12.38 34.70 4.18
566 2883 0.809385 AACACGTGAGATCGATCGGT 59.191 50.000 25.01 8.34 34.70 4.69
567 2884 1.660167 ACACGTGAGATCGATCGGTA 58.340 50.000 25.01 7.41 34.70 4.02
568 2885 1.329906 ACACGTGAGATCGATCGGTAC 59.670 52.381 25.01 16.95 34.70 3.34
569 2886 0.580578 ACGTGAGATCGATCGGTACG 59.419 55.000 31.30 31.30 43.58 3.67
570 2887 3.303035 ACGTGAGATCGATCGGTACGC 62.303 57.143 32.11 23.38 42.60 4.42
584 2901 3.777465 GGTACGCTAGATGAAGACACA 57.223 47.619 0.00 0.00 0.00 3.72
585 2902 3.696898 GGTACGCTAGATGAAGACACAG 58.303 50.000 0.00 0.00 0.00 3.66
586 2903 3.128938 GGTACGCTAGATGAAGACACAGT 59.871 47.826 0.00 0.00 0.00 3.55
587 2904 4.334759 GGTACGCTAGATGAAGACACAGTA 59.665 45.833 0.00 0.00 0.00 2.74
588 2905 4.358494 ACGCTAGATGAAGACACAGTAC 57.642 45.455 0.00 0.00 0.00 2.73
589 2906 3.756963 ACGCTAGATGAAGACACAGTACA 59.243 43.478 0.00 0.00 0.00 2.90
590 2907 4.099120 CGCTAGATGAAGACACAGTACAC 58.901 47.826 0.00 0.00 0.00 2.90
591 2908 4.099120 GCTAGATGAAGACACAGTACACG 58.901 47.826 0.00 0.00 0.00 4.49
592 2909 4.379603 GCTAGATGAAGACACAGTACACGT 60.380 45.833 0.00 0.00 0.00 4.49
593 2910 5.163784 GCTAGATGAAGACACAGTACACGTA 60.164 44.000 0.00 0.00 0.00 3.57
594 2911 5.044428 AGATGAAGACACAGTACACGTAC 57.956 43.478 0.00 0.00 36.35 3.67
595 2912 4.760715 AGATGAAGACACAGTACACGTACT 59.239 41.667 3.99 3.99 46.52 2.73
596 2913 5.936372 AGATGAAGACACAGTACACGTACTA 59.064 40.000 9.45 0.00 43.98 1.82
597 2914 5.348418 TGAAGACACAGTACACGTACTAC 57.652 43.478 9.45 3.15 43.98 2.73
598 2915 5.059161 TGAAGACACAGTACACGTACTACT 58.941 41.667 9.45 5.07 43.98 2.57
599 2916 6.223120 TGAAGACACAGTACACGTACTACTA 58.777 40.000 9.45 0.00 43.98 1.82
600 2917 6.367149 TGAAGACACAGTACACGTACTACTAG 59.633 42.308 9.45 0.92 43.98 2.57
601 2918 5.788450 AGACACAGTACACGTACTACTAGT 58.212 41.667 9.45 0.00 43.98 2.57
602 2919 5.866633 AGACACAGTACACGTACTACTAGTC 59.133 44.000 9.45 18.35 43.98 2.59
603 2920 5.788450 ACACAGTACACGTACTACTAGTCT 58.212 41.667 9.45 0.00 43.98 3.24
604 2921 6.925211 ACACAGTACACGTACTACTAGTCTA 58.075 40.000 9.45 0.00 43.98 2.59
605 2922 6.809196 ACACAGTACACGTACTACTAGTCTAC 59.191 42.308 9.45 0.00 43.98 2.59
606 2923 7.032580 CACAGTACACGTACTACTAGTCTACT 58.967 42.308 9.45 0.00 43.98 2.57
607 2924 8.184848 CACAGTACACGTACTACTAGTCTACTA 58.815 40.741 9.45 0.00 43.98 1.82
608 2925 8.185505 ACAGTACACGTACTACTAGTCTACTAC 58.814 40.741 9.45 0.52 43.98 2.73
609 2926 8.184848 CAGTACACGTACTACTAGTCTACTACA 58.815 40.741 9.45 0.00 43.98 2.74
610 2927 8.185505 AGTACACGTACTACTAGTCTACTACAC 58.814 40.741 8.09 0.00 43.98 2.90
611 2928 6.925211 ACACGTACTACTAGTCTACTACACA 58.075 40.000 0.00 0.00 0.00 3.72
612 2929 6.809196 ACACGTACTACTAGTCTACTACACAC 59.191 42.308 0.00 0.00 0.00 3.82
613 2930 6.021074 CACGTACTACTAGTCTACTACACACG 60.021 46.154 0.00 0.63 0.00 4.49
614 2931 6.030849 CGTACTACTAGTCTACTACACACGT 58.969 44.000 0.00 0.00 0.00 4.49
615 2932 6.528423 CGTACTACTAGTCTACTACACACGTT 59.472 42.308 0.00 0.00 0.00 3.99
616 2933 6.718454 ACTACTAGTCTACTACACACGTTG 57.282 41.667 0.00 0.00 0.00 4.10
617 2934 6.459066 ACTACTAGTCTACTACACACGTTGA 58.541 40.000 0.00 0.00 0.00 3.18
618 2935 5.859521 ACTAGTCTACTACACACGTTGAG 57.140 43.478 0.00 0.00 0.00 3.02
619 2936 5.303971 ACTAGTCTACTACACACGTTGAGT 58.696 41.667 0.00 0.28 0.00 3.41
620 2937 6.459066 ACTAGTCTACTACACACGTTGAGTA 58.541 40.000 0.00 1.33 0.00 2.59
621 2938 5.859521 AGTCTACTACACACGTTGAGTAG 57.140 43.478 14.09 14.09 43.87 2.57
622 2939 4.153835 AGTCTACTACACACGTTGAGTAGC 59.846 45.833 15.11 11.13 42.66 3.58
623 2940 4.067192 TCTACTACACACGTTGAGTAGCA 58.933 43.478 15.11 5.54 42.66 3.49
624 2941 3.936372 ACTACACACGTTGAGTAGCAT 57.064 42.857 15.11 0.00 42.66 3.79
625 2942 4.252971 ACTACACACGTTGAGTAGCATT 57.747 40.909 15.11 0.00 42.66 3.56
626 2943 4.235360 ACTACACACGTTGAGTAGCATTC 58.765 43.478 15.11 0.00 42.66 2.67
627 2944 3.106242 ACACACGTTGAGTAGCATTCA 57.894 42.857 5.01 0.00 0.00 2.57
628 2945 3.059884 ACACACGTTGAGTAGCATTCAG 58.940 45.455 5.01 0.00 0.00 3.02
629 2946 3.243737 ACACACGTTGAGTAGCATTCAGA 60.244 43.478 5.01 0.00 0.00 3.27
630 2947 3.366121 CACACGTTGAGTAGCATTCAGAG 59.634 47.826 0.00 0.00 0.00 3.35
631 2948 2.926200 CACGTTGAGTAGCATTCAGAGG 59.074 50.000 0.00 0.00 0.00 3.69
632 2949 1.929836 CGTTGAGTAGCATTCAGAGGC 59.070 52.381 0.00 0.00 0.00 4.70
633 2950 2.284190 GTTGAGTAGCATTCAGAGGCC 58.716 52.381 0.00 0.00 31.67 5.19
634 2951 1.871418 TGAGTAGCATTCAGAGGCCT 58.129 50.000 3.86 3.86 31.67 5.19
635 2952 1.483827 TGAGTAGCATTCAGAGGCCTG 59.516 52.381 12.00 0.00 41.74 4.85
636 2953 0.179936 AGTAGCATTCAGAGGCCTGC 59.820 55.000 12.00 7.27 40.20 4.85
637 2954 1.144716 TAGCATTCAGAGGCCTGCG 59.855 57.895 12.00 0.00 40.20 5.18
638 2955 1.617018 TAGCATTCAGAGGCCTGCGT 61.617 55.000 12.00 0.00 40.20 5.24
639 2956 1.153369 GCATTCAGAGGCCTGCGTA 60.153 57.895 12.00 0.00 40.20 4.42
655 2972 0.797249 CGTACACGTACTGCTCTGGC 60.797 60.000 5.84 0.00 34.04 4.85
663 3058 2.802816 CGTACTGCTCTGGCCATAAATC 59.197 50.000 5.51 0.00 37.74 2.17
670 3065 3.749954 GCTCTGGCCATAAATCAGGTCAT 60.750 47.826 5.51 0.00 39.10 3.06
751 3160 4.446889 GGGCATTCCTGGAAGACAAGATAT 60.447 45.833 15.34 0.00 34.07 1.63
776 3190 4.154347 CCTCGCCTCACCTGCTCC 62.154 72.222 0.00 0.00 0.00 4.70
890 3304 6.126652 CCATCCTCTCCTCAAGGAAAAAGATA 60.127 42.308 0.00 0.00 45.79 1.98
944 3364 2.411290 CACCGCACACAAACACCC 59.589 61.111 0.00 0.00 0.00 4.61
947 3367 2.518349 CGCACACAAACACCCCCT 60.518 61.111 0.00 0.00 0.00 4.79
948 3368 2.551912 CGCACACAAACACCCCCTC 61.552 63.158 0.00 0.00 0.00 4.30
949 3369 2.200337 GCACACAAACACCCCCTCC 61.200 63.158 0.00 0.00 0.00 4.30
1026 3466 0.545309 AGCACAAGGAGCTGGAGGTA 60.545 55.000 0.00 0.00 41.61 3.08
1041 3481 2.359355 GGAGGTAGATGTGGAGGGAGAA 60.359 54.545 0.00 0.00 0.00 2.87
1064 3504 2.899339 GGATCAGCGCAAGGAGGC 60.899 66.667 11.47 0.70 38.28 4.70
1095 3541 1.979155 GGGCAAGCCTGAAGAACCC 60.979 63.158 11.40 0.00 36.10 4.11
1119 3568 1.267574 ATCAGCGCAAGGAGGAGGAA 61.268 55.000 11.47 0.00 38.28 3.36
1121 3570 2.124942 GCGCAAGGAGGAGGAAGG 60.125 66.667 0.30 0.00 38.28 3.46
1122 3571 2.660064 GCGCAAGGAGGAGGAAGGA 61.660 63.158 0.30 0.00 38.28 3.36
1123 3572 1.519719 CGCAAGGAGGAGGAAGGAG 59.480 63.158 0.00 0.00 0.00 3.69
1124 3573 0.972983 CGCAAGGAGGAGGAAGGAGA 60.973 60.000 0.00 0.00 0.00 3.71
1125 3574 0.539518 GCAAGGAGGAGGAAGGAGAC 59.460 60.000 0.00 0.00 0.00 3.36
1126 3575 1.944177 CAAGGAGGAGGAAGGAGACA 58.056 55.000 0.00 0.00 0.00 3.41
1127 3576 2.260822 CAAGGAGGAGGAAGGAGACAA 58.739 52.381 0.00 0.00 0.00 3.18
1128 3577 1.945580 AGGAGGAGGAAGGAGACAAC 58.054 55.000 0.00 0.00 0.00 3.32
1129 3578 0.906066 GGAGGAGGAAGGAGACAACC 59.094 60.000 0.00 0.00 0.00 3.77
1130 3579 1.553651 GGAGGAGGAAGGAGACAACCT 60.554 57.143 0.00 0.00 42.69 3.50
1131 3580 1.828595 GAGGAGGAAGGAGACAACCTC 59.171 57.143 0.00 0.00 46.76 3.85
1134 3583 3.771577 GAGGAAGGAGACAACCTCAAA 57.228 47.619 0.00 0.00 46.73 2.69
1135 3584 3.669536 GAGGAAGGAGACAACCTCAAAG 58.330 50.000 0.00 0.00 46.73 2.77
1136 3585 3.318313 AGGAAGGAGACAACCTCAAAGA 58.682 45.455 0.00 0.00 43.76 2.52
1137 3586 3.326297 AGGAAGGAGACAACCTCAAAGAG 59.674 47.826 0.00 0.00 43.76 2.85
1138 3587 2.849294 AGGAGACAACCTCAAAGAGC 57.151 50.000 0.00 0.00 43.76 4.09
1139 3588 1.349357 AGGAGACAACCTCAAAGAGCC 59.651 52.381 0.00 0.00 43.76 4.70
1140 3589 1.072331 GGAGACAACCTCAAAGAGCCA 59.928 52.381 0.00 0.00 43.76 4.75
1141 3590 2.487265 GGAGACAACCTCAAAGAGCCAA 60.487 50.000 0.00 0.00 43.76 4.52
1142 3591 2.550180 GAGACAACCTCAAAGAGCCAAC 59.450 50.000 0.00 0.00 41.58 3.77
1143 3592 1.264288 GACAACCTCAAAGAGCCAACG 59.736 52.381 0.00 0.00 0.00 4.10
1144 3593 0.593128 CAACCTCAAAGAGCCAACGG 59.407 55.000 0.00 0.00 0.00 4.44
1145 3594 0.472471 AACCTCAAAGAGCCAACGGA 59.528 50.000 0.00 0.00 0.00 4.69
1146 3595 0.693049 ACCTCAAAGAGCCAACGGAT 59.307 50.000 0.00 0.00 0.00 4.18
1147 3596 1.339151 ACCTCAAAGAGCCAACGGATC 60.339 52.381 0.00 0.00 38.56 3.36
1148 3597 1.339055 CCTCAAAGAGCCAACGGATCA 60.339 52.381 0.54 0.00 41.08 2.92
1149 3598 2.005451 CTCAAAGAGCCAACGGATCAG 58.995 52.381 0.54 0.00 41.08 2.90
1150 3599 1.623311 TCAAAGAGCCAACGGATCAGA 59.377 47.619 0.00 0.00 41.08 3.27
1151 3600 2.005451 CAAAGAGCCAACGGATCAGAG 58.995 52.381 0.00 0.00 41.08 3.35
1152 3601 1.270907 AAGAGCCAACGGATCAGAGT 58.729 50.000 0.00 0.00 41.08 3.24
1153 3602 2.145397 AGAGCCAACGGATCAGAGTA 57.855 50.000 0.00 0.00 41.08 2.59
1154 3603 2.457598 AGAGCCAACGGATCAGAGTAA 58.542 47.619 0.00 0.00 41.08 2.24
1155 3604 2.428890 AGAGCCAACGGATCAGAGTAAG 59.571 50.000 0.00 0.00 41.08 2.34
1156 3605 1.482593 AGCCAACGGATCAGAGTAAGG 59.517 52.381 0.00 1.79 0.00 2.69
1157 3606 1.480954 GCCAACGGATCAGAGTAAGGA 59.519 52.381 0.00 0.00 0.00 3.36
1158 3607 2.482142 GCCAACGGATCAGAGTAAGGAG 60.482 54.545 0.00 0.00 0.00 3.69
1159 3608 2.101582 CCAACGGATCAGAGTAAGGAGG 59.898 54.545 0.00 0.00 0.00 4.30
1160 3609 3.024547 CAACGGATCAGAGTAAGGAGGA 58.975 50.000 0.00 0.00 0.00 3.71
1161 3610 2.938838 ACGGATCAGAGTAAGGAGGAG 58.061 52.381 0.00 0.00 0.00 3.69
1162 3611 2.235016 CGGATCAGAGTAAGGAGGAGG 58.765 57.143 0.00 0.00 0.00 4.30
1163 3612 2.158593 CGGATCAGAGTAAGGAGGAGGA 60.159 54.545 0.00 0.00 0.00 3.71
1164 3613 3.496331 GGATCAGAGTAAGGAGGAGGAG 58.504 54.545 0.00 0.00 0.00 3.69
1165 3614 2.445682 TCAGAGTAAGGAGGAGGAGC 57.554 55.000 0.00 0.00 0.00 4.70
1166 3615 1.028905 CAGAGTAAGGAGGAGGAGCG 58.971 60.000 0.00 0.00 0.00 5.03
1203 3652 0.250338 ACCTCAAAGAGCCAACGGAC 60.250 55.000 0.00 0.00 0.00 4.79
1218 3667 2.435059 GACCAGCGCAAGGAGGAC 60.435 66.667 23.50 7.58 38.28 3.85
1248 3697 2.611722 GGACAAGTCTGAAGAGCTGACC 60.612 54.545 0.00 0.00 44.02 4.02
1251 3700 0.885196 AGTCTGAAGAGCTGACCGAC 59.115 55.000 0.00 0.00 44.02 4.79
1479 4027 3.950794 CTACGCGTGGTGCATGGGT 62.951 63.158 24.59 0.00 46.97 4.51
1629 4180 5.934625 CACTGGCAGAGTAAGTAGTTTTCAT 59.065 40.000 23.66 0.00 31.73 2.57
1661 4216 6.319658 TGGTAAGCATTTCTCATTTCTGGATC 59.680 38.462 0.00 0.00 0.00 3.36
1666 4221 6.040616 AGCATTTCTCATTTCTGGATCATTCC 59.959 38.462 0.00 0.00 42.94 3.01
1667 4222 6.040616 GCATTTCTCATTTCTGGATCATTCCT 59.959 38.462 0.00 0.00 43.07 3.36
1668 4223 7.230108 GCATTTCTCATTTCTGGATCATTCCTA 59.770 37.037 0.00 0.00 43.07 2.94
1677 4235 6.233905 TCTGGATCATTCCTAATTGACGAA 57.766 37.500 0.00 0.00 43.07 3.85
1680 4238 6.049149 TGGATCATTCCTAATTGACGAAGAC 58.951 40.000 0.00 0.00 43.07 3.01
1833 4391 2.263077 CACAACTAGCTAGCGTTCAGG 58.737 52.381 20.91 5.19 0.00 3.86
1928 4490 0.796927 GTTAGCGGGCTGTCAACTTC 59.203 55.000 2.86 0.00 0.00 3.01
2012 4584 6.646636 AGAAATTAAGTGTTGACGTTCTTCG 58.353 36.000 0.00 0.00 46.00 3.79
2015 4587 1.200839 GTGTTGACGTTCTTCGCGG 59.799 57.895 6.13 0.00 44.19 6.46
2018 4590 1.372499 TTGACGTTCTTCGCGGAGG 60.372 57.895 15.94 0.31 44.19 4.30
2075 4652 8.418662 AGATTAAGAACTACTGTGTGTGTTACA 58.581 33.333 0.00 0.00 36.82 2.41
2123 4700 5.641209 GTCTGTGTTCTGTAAGCTGATTGAT 59.359 40.000 0.00 0.00 0.00 2.57
2127 4704 5.294552 GTGTTCTGTAAGCTGATTGATACCC 59.705 44.000 0.00 0.00 0.00 3.69
2129 4706 3.704566 TCTGTAAGCTGATTGATACCCGT 59.295 43.478 0.00 0.00 0.00 5.28
2144 4721 5.361571 TGATACCCGTTCAACTTATCTGCTA 59.638 40.000 0.00 0.00 0.00 3.49
2147 4724 4.020485 ACCCGTTCAACTTATCTGCTAACT 60.020 41.667 0.00 0.00 0.00 2.24
2170 4747 2.901192 TGGTAGTTAACTGCTACAGCCA 59.099 45.455 20.97 12.56 40.24 4.75
2174 4751 5.163754 GGTAGTTAACTGCTACAGCCATTTG 60.164 44.000 20.97 0.00 40.24 2.32
2175 4752 4.398319 AGTTAACTGCTACAGCCATTTGT 58.602 39.130 7.48 0.00 41.18 2.83
2176 4753 4.455877 AGTTAACTGCTACAGCCATTTGTC 59.544 41.667 7.48 0.00 41.18 3.18
2178 4755 0.729116 CTGCTACAGCCATTTGTCCG 59.271 55.000 0.00 0.00 41.18 4.79
2179 4756 0.036164 TGCTACAGCCATTTGTCCGT 59.964 50.000 0.00 0.00 41.18 4.69
2182 4759 2.030274 GCTACAGCCATTTGTCCGTTTT 60.030 45.455 0.00 0.00 34.31 2.43
2183 4760 3.189702 GCTACAGCCATTTGTCCGTTTTA 59.810 43.478 0.00 0.00 34.31 1.52
2184 4761 3.636282 ACAGCCATTTGTCCGTTTTAC 57.364 42.857 0.00 0.00 0.00 2.01
2185 4762 3.219281 ACAGCCATTTGTCCGTTTTACT 58.781 40.909 0.00 0.00 0.00 2.24
2186 4763 4.391155 ACAGCCATTTGTCCGTTTTACTA 58.609 39.130 0.00 0.00 0.00 1.82
2187 4764 4.214758 ACAGCCATTTGTCCGTTTTACTAC 59.785 41.667 0.00 0.00 0.00 2.73
2198 4775 5.464389 GTCCGTTTTACTACAAGTGATGTGT 59.536 40.000 0.00 0.00 43.77 3.72
2214 4798 0.938168 GTGTTGTCGGTGGTCTCGTC 60.938 60.000 0.00 0.00 0.00 4.20
2220 4804 0.313043 TCGGTGGTCTCGTCTTTCAC 59.687 55.000 0.00 0.00 0.00 3.18
2236 4821 6.255887 CGTCTTTCACTAAGAACTCTGTGTTT 59.744 38.462 0.00 0.00 44.25 2.83
2251 4836 6.979238 ACTCTGTGTTTGTACTGTTCTTCTAC 59.021 38.462 0.00 0.00 0.00 2.59
2272 4859 5.751243 ACACTGTTGGTATGTTTTGTCTC 57.249 39.130 0.00 0.00 0.00 3.36
2281 4868 7.164230 TGGTATGTTTTGTCTCTGTTTTTGT 57.836 32.000 0.00 0.00 0.00 2.83
2284 4871 9.575783 GGTATGTTTTGTCTCTGTTTTTGTAAA 57.424 29.630 0.00 0.00 0.00 2.01
2307 4901 2.099756 GCAAACCTGAACTTGACTGCTT 59.900 45.455 0.00 0.00 0.00 3.91
2342 4947 5.000012 AGCTACAGTGTACAGTATTCAGC 58.000 43.478 2.08 9.37 0.00 4.26
2346 4951 2.932614 CAGTGTACAGTATTCAGCCTGC 59.067 50.000 2.08 0.00 31.76 4.85
2352 4957 2.836981 ACAGTATTCAGCCTGCTTCTCT 59.163 45.455 0.00 0.00 31.76 3.10
2409 5015 0.028505 GCTCAGGTGCATTGCGTATG 59.971 55.000 3.84 2.53 37.31 2.39
2410 5016 1.655484 CTCAGGTGCATTGCGTATGA 58.345 50.000 3.84 6.72 36.26 2.15
2411 5017 1.596260 CTCAGGTGCATTGCGTATGAG 59.404 52.381 17.07 17.07 36.26 2.90
2412 5018 1.066215 TCAGGTGCATTGCGTATGAGT 60.066 47.619 3.84 0.00 36.26 3.41
2413 5019 2.167487 TCAGGTGCATTGCGTATGAGTA 59.833 45.455 3.84 0.00 36.26 2.59
2427 5035 6.708949 TGCGTATGAGTATGACAGTATGAGTA 59.291 38.462 0.00 0.00 39.69 2.59
2432 5040 7.751768 TGAGTATGACAGTATGAGTATCTGG 57.248 40.000 0.00 0.00 39.69 3.86
2436 5044 3.384789 TGACAGTATGAGTATCTGGCCAC 59.615 47.826 0.00 0.00 39.69 5.01
2466 5074 9.974980 GTTTTATTTGACTGGAATTGGAGTTAA 57.025 29.630 0.00 0.00 0.00 2.01
2485 5102 0.773644 ATCCTGGTTGACCTGCTTGT 59.226 50.000 1.34 0.00 36.82 3.16
2517 5138 1.681538 TGGAGAGACCGCTAGATCAC 58.318 55.000 0.00 0.00 42.61 3.06
2521 5142 1.797211 GAGACCGCTAGATCACCCGG 61.797 65.000 14.02 14.02 45.80 5.73
2525 5146 1.392710 CCGCTAGATCACCCGGTTCT 61.393 60.000 0.00 0.00 36.18 3.01
2544 5169 5.357257 GTTCTAACGGAATCATAGCAGGAA 58.643 41.667 0.00 0.00 36.24 3.36
2556 5188 5.237815 TCATAGCAGGAATAGGTTATTGCG 58.762 41.667 0.00 0.00 40.84 4.85
2573 5205 5.731599 ATTGCGAGAGAAATCTTAAGCAG 57.268 39.130 0.00 0.00 32.57 4.24
2574 5206 2.932614 TGCGAGAGAAATCTTAAGCAGC 59.067 45.455 0.00 0.00 0.00 5.25
2693 5333 2.321263 ATCACTCATCAGGCAGCCGG 62.321 60.000 5.55 5.25 0.00 6.13
2694 5334 4.479993 ACTCATCAGGCAGCCGGC 62.480 66.667 21.89 21.89 43.74 6.13
2737 5377 3.823281 CATGGCATGCCCTGATAAAAA 57.177 42.857 31.68 12.82 34.28 1.94
2757 5397 3.837213 AAAAGGCAATGAGACGACATG 57.163 42.857 0.00 0.00 0.00 3.21
2758 5398 1.742761 AAGGCAATGAGACGACATGG 58.257 50.000 0.00 0.00 0.00 3.66
2792 5434 2.969443 AAAAAGGCAATGAGACGACG 57.031 45.000 0.00 0.00 0.00 5.12
2793 5435 2.163818 AAAAGGCAATGAGACGACGA 57.836 45.000 0.00 0.00 0.00 4.20
2794 5436 2.163818 AAAGGCAATGAGACGACGAA 57.836 45.000 0.00 0.00 0.00 3.85
2795 5437 2.386661 AAGGCAATGAGACGACGAAT 57.613 45.000 0.00 0.00 0.00 3.34
2796 5438 1.927895 AGGCAATGAGACGACGAATC 58.072 50.000 0.00 0.00 0.00 2.52
2797 5439 1.478510 AGGCAATGAGACGACGAATCT 59.521 47.619 0.00 0.00 0.00 2.40
2798 5440 2.688446 AGGCAATGAGACGACGAATCTA 59.312 45.455 0.00 0.00 0.00 1.98
2799 5441 3.130516 AGGCAATGAGACGACGAATCTAA 59.869 43.478 0.00 0.00 0.00 2.10
2800 5442 3.487574 GGCAATGAGACGACGAATCTAAG 59.512 47.826 0.00 0.00 0.00 2.18
2801 5443 3.487574 GCAATGAGACGACGAATCTAAGG 59.512 47.826 0.00 0.00 0.00 2.69
2802 5444 2.846039 TGAGACGACGAATCTAAGGC 57.154 50.000 0.00 0.00 0.00 4.35
2803 5445 1.404391 TGAGACGACGAATCTAAGGCC 59.596 52.381 0.00 0.00 0.00 5.19
2804 5446 1.404391 GAGACGACGAATCTAAGGCCA 59.596 52.381 5.01 0.00 0.00 5.36
2805 5447 1.822990 AGACGACGAATCTAAGGCCAA 59.177 47.619 5.01 0.00 0.00 4.52
2806 5448 1.925185 GACGACGAATCTAAGGCCAAC 59.075 52.381 5.01 0.00 0.00 3.77
2807 5449 1.549170 ACGACGAATCTAAGGCCAACT 59.451 47.619 5.01 0.00 0.00 3.16
2808 5450 2.194271 CGACGAATCTAAGGCCAACTC 58.806 52.381 5.01 0.00 0.00 3.01
2809 5451 2.552031 GACGAATCTAAGGCCAACTCC 58.448 52.381 5.01 0.00 0.00 3.85
2810 5452 1.906574 ACGAATCTAAGGCCAACTCCA 59.093 47.619 5.01 0.00 0.00 3.86
2811 5453 2.280628 CGAATCTAAGGCCAACTCCAC 58.719 52.381 5.01 0.00 0.00 4.02
2812 5454 2.644676 GAATCTAAGGCCAACTCCACC 58.355 52.381 5.01 0.00 0.00 4.61
2813 5455 0.541863 ATCTAAGGCCAACTCCACCG 59.458 55.000 5.01 0.00 0.00 4.94
2814 5456 1.745489 CTAAGGCCAACTCCACCGC 60.745 63.158 5.01 0.00 0.00 5.68
2815 5457 3.599285 TAAGGCCAACTCCACCGCG 62.599 63.158 5.01 0.00 0.00 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.287061 TCAGGAAATTCTCTTCTTTTGTGGTA 58.713 34.615 0.00 0.00 0.00 3.25
1 2 6.129179 TCAGGAAATTCTCTTCTTTTGTGGT 58.871 36.000 0.00 0.00 0.00 4.16
3 4 6.264067 ACCTCAGGAAATTCTCTTCTTTTGTG 59.736 38.462 0.00 0.00 0.00 3.33
72 1145 1.618861 AAACGCTGTTCTCTCGATCG 58.381 50.000 9.36 9.36 0.00 3.69
73 1146 4.602995 AGATAAACGCTGTTCTCTCGATC 58.397 43.478 0.00 0.00 0.00 3.69
74 1147 4.640789 AGATAAACGCTGTTCTCTCGAT 57.359 40.909 0.00 0.00 0.00 3.59
75 1148 4.082949 TCAAGATAAACGCTGTTCTCTCGA 60.083 41.667 0.00 0.00 0.00 4.04
76 1149 4.166523 TCAAGATAAACGCTGTTCTCTCG 58.833 43.478 0.00 0.00 0.00 4.04
115 1191 2.758423 CCCAGGTTTACTTTGCATACCC 59.242 50.000 0.00 0.00 0.00 3.69
286 1379 2.664081 GGAGGGGTGGTCAGCTGAG 61.664 68.421 18.89 0.00 0.00 3.35
287 1380 2.607750 GGAGGGGTGGTCAGCTGA 60.608 66.667 13.74 13.74 0.00 4.26
335 1429 1.808343 GTAGGGCGGTAAAAGGTTGTG 59.192 52.381 0.00 0.00 0.00 3.33
336 1430 1.271543 GGTAGGGCGGTAAAAGGTTGT 60.272 52.381 0.00 0.00 0.00 3.32
342 1436 1.660242 AGAAGGGTAGGGCGGTAAAA 58.340 50.000 0.00 0.00 0.00 1.52
343 1437 1.556451 GAAGAAGGGTAGGGCGGTAAA 59.444 52.381 0.00 0.00 0.00 2.01
349 1443 0.751452 CCGTAGAAGAAGGGTAGGGC 59.249 60.000 0.00 0.00 0.00 5.19
356 1450 0.391263 GCCACACCCGTAGAAGAAGG 60.391 60.000 0.00 0.00 0.00 3.46
357 1451 0.608640 AGCCACACCCGTAGAAGAAG 59.391 55.000 0.00 0.00 0.00 2.85
358 1452 1.053424 AAGCCACACCCGTAGAAGAA 58.947 50.000 0.00 0.00 0.00 2.52
361 1455 1.373435 CCAAGCCACACCCGTAGAA 59.627 57.895 0.00 0.00 0.00 2.10
362 1456 1.823169 GACCAAGCCACACCCGTAGA 61.823 60.000 0.00 0.00 0.00 2.59
363 1457 1.375523 GACCAAGCCACACCCGTAG 60.376 63.158 0.00 0.00 0.00 3.51
364 1458 2.745037 GACCAAGCCACACCCGTA 59.255 61.111 0.00 0.00 0.00 4.02
365 1459 4.265056 GGACCAAGCCACACCCGT 62.265 66.667 0.00 0.00 0.00 5.28
367 1461 3.901797 CTCGGACCAAGCCACACCC 62.902 68.421 0.00 0.00 0.00 4.61
368 1462 2.185310 ATCTCGGACCAAGCCACACC 62.185 60.000 0.00 0.00 0.00 4.16
369 1463 0.741221 GATCTCGGACCAAGCCACAC 60.741 60.000 0.00 0.00 0.00 3.82
370 1464 0.904865 AGATCTCGGACCAAGCCACA 60.905 55.000 0.00 0.00 0.00 4.17
371 1465 1.112113 TAGATCTCGGACCAAGCCAC 58.888 55.000 0.00 0.00 0.00 5.01
373 1467 1.202545 GGTTAGATCTCGGACCAAGCC 60.203 57.143 14.66 0.00 32.41 4.35
374 1468 1.480954 TGGTTAGATCTCGGACCAAGC 59.519 52.381 18.21 8.84 39.11 4.01
375 1469 3.887621 TTGGTTAGATCTCGGACCAAG 57.112 47.619 23.80 0.00 44.72 3.61
376 1470 3.170717 ACTTGGTTAGATCTCGGACCAA 58.829 45.455 24.98 24.98 46.69 3.67
378 1472 3.025262 AGACTTGGTTAGATCTCGGACC 58.975 50.000 0.00 7.19 0.00 4.46
379 1473 3.695060 TGAGACTTGGTTAGATCTCGGAC 59.305 47.826 0.00 0.00 40.45 4.79
380 1474 3.948473 CTGAGACTTGGTTAGATCTCGGA 59.052 47.826 0.00 0.00 44.19 4.55
382 1476 4.974368 ACTGAGACTTGGTTAGATCTCG 57.026 45.455 0.00 0.00 40.45 4.04
387 1481 9.485206 GTGTTATTTTACTGAGACTTGGTTAGA 57.515 33.333 0.00 0.00 0.00 2.10
388 1482 9.490379 AGTGTTATTTTACTGAGACTTGGTTAG 57.510 33.333 0.00 0.00 0.00 2.34
390 1484 9.269453 GTAGTGTTATTTTACTGAGACTTGGTT 57.731 33.333 0.00 0.00 0.00 3.67
391 1485 8.426489 TGTAGTGTTATTTTACTGAGACTTGGT 58.574 33.333 0.00 0.00 0.00 3.67
392 1486 8.827177 TGTAGTGTTATTTTACTGAGACTTGG 57.173 34.615 0.00 0.00 0.00 3.61
394 1488 9.998106 ACATGTAGTGTTATTTTACTGAGACTT 57.002 29.630 0.00 0.00 38.01 3.01
476 1678 8.956426 ACTGAAACTTTGTTAAGTCTCATTTGA 58.044 29.630 0.00 0.00 43.74 2.69
477 1679 9.573133 AACTGAAACTTTGTTAAGTCTCATTTG 57.427 29.630 0.00 0.00 43.74 2.32
478 1680 9.573133 CAACTGAAACTTTGTTAAGTCTCATTT 57.427 29.630 0.00 0.00 43.74 2.32
479 1681 8.956426 TCAACTGAAACTTTGTTAAGTCTCATT 58.044 29.630 0.00 0.00 43.74 2.57
480 1682 8.506168 TCAACTGAAACTTTGTTAAGTCTCAT 57.494 30.769 0.00 0.00 43.74 2.90
484 1686 9.567848 TCAATTCAACTGAAACTTTGTTAAGTC 57.432 29.630 0.00 0.00 43.74 3.01
485 1687 9.353999 GTCAATTCAACTGAAACTTTGTTAAGT 57.646 29.630 0.00 0.00 46.44 2.24
486 1688 9.573133 AGTCAATTCAACTGAAACTTTGTTAAG 57.427 29.630 0.00 0.00 37.61 1.85
488 1690 7.973388 CCAGTCAATTCAACTGAAACTTTGTTA 59.027 33.333 15.85 0.00 45.64 2.41
490 1692 6.152661 TCCAGTCAATTCAACTGAAACTTTGT 59.847 34.615 15.85 0.00 45.64 2.83
495 1697 5.278022 GGTCTCCAGTCAATTCAACTGAAAC 60.278 44.000 15.85 11.12 45.64 2.78
496 1698 4.821805 GGTCTCCAGTCAATTCAACTGAAA 59.178 41.667 15.85 6.00 45.64 2.69
499 1701 4.013267 AGGTCTCCAGTCAATTCAACTG 57.987 45.455 9.58 9.58 43.04 3.16
500 1702 4.323104 GCTAGGTCTCCAGTCAATTCAACT 60.323 45.833 0.00 0.00 0.00 3.16
501 1703 3.935828 GCTAGGTCTCCAGTCAATTCAAC 59.064 47.826 0.00 0.00 0.00 3.18
503 1705 3.173151 TGCTAGGTCTCCAGTCAATTCA 58.827 45.455 0.00 0.00 0.00 2.57
504 1706 3.895232 TGCTAGGTCTCCAGTCAATTC 57.105 47.619 0.00 0.00 0.00 2.17
506 1708 3.196685 GTCTTGCTAGGTCTCCAGTCAAT 59.803 47.826 0.00 0.00 0.00 2.57
507 1709 2.563179 GTCTTGCTAGGTCTCCAGTCAA 59.437 50.000 0.00 0.00 0.00 3.18
508 1710 2.171840 GTCTTGCTAGGTCTCCAGTCA 58.828 52.381 0.00 0.00 0.00 3.41
509 1711 2.452505 AGTCTTGCTAGGTCTCCAGTC 58.547 52.381 0.00 0.00 0.00 3.51
511 1713 3.971245 AAAGTCTTGCTAGGTCTCCAG 57.029 47.619 0.00 0.00 0.00 3.86
512 1714 3.904339 AGAAAAGTCTTGCTAGGTCTCCA 59.096 43.478 0.00 0.00 0.00 3.86
513 1715 4.545208 AGAAAAGTCTTGCTAGGTCTCC 57.455 45.455 0.00 0.00 0.00 3.71
514 1716 5.637387 CAGAAGAAAAGTCTTGCTAGGTCTC 59.363 44.000 0.00 0.00 44.42 3.36
515 1717 5.546526 CAGAAGAAAAGTCTTGCTAGGTCT 58.453 41.667 0.00 0.00 44.42 3.85
516 1718 4.153296 GCAGAAGAAAAGTCTTGCTAGGTC 59.847 45.833 0.00 0.00 44.42 3.85
518 1720 4.322567 AGCAGAAGAAAAGTCTTGCTAGG 58.677 43.478 1.93 0.00 43.23 3.02
520 1722 4.023707 GCAAGCAGAAGAAAAGTCTTGCTA 60.024 41.667 15.04 0.00 43.92 3.49
521 1723 3.243334 GCAAGCAGAAGAAAAGTCTTGCT 60.243 43.478 15.04 0.00 45.73 3.91
522 1724 3.048501 GCAAGCAGAAGAAAAGTCTTGC 58.951 45.455 8.67 8.67 44.42 4.01
523 1725 4.297299 TGCAAGCAGAAGAAAAGTCTTG 57.703 40.909 0.00 0.00 44.42 3.02
525 1727 4.139786 TGATGCAAGCAGAAGAAAAGTCT 58.860 39.130 0.00 0.00 34.72 3.24
526 1728 4.494350 TGATGCAAGCAGAAGAAAAGTC 57.506 40.909 0.00 0.00 0.00 3.01
527 1729 4.098349 TGTTGATGCAAGCAGAAGAAAAGT 59.902 37.500 0.00 0.00 28.24 2.66
528 1730 4.443394 GTGTTGATGCAAGCAGAAGAAAAG 59.557 41.667 0.00 0.00 28.24 2.27
529 1731 4.362279 GTGTTGATGCAAGCAGAAGAAAA 58.638 39.130 0.00 0.00 28.24 2.29
530 1732 3.548616 CGTGTTGATGCAAGCAGAAGAAA 60.549 43.478 0.00 0.00 28.24 2.52
531 1733 2.031769 CGTGTTGATGCAAGCAGAAGAA 60.032 45.455 0.00 0.00 28.24 2.52
533 1735 1.265095 ACGTGTTGATGCAAGCAGAAG 59.735 47.619 0.00 0.00 28.24 2.85
534 1736 1.002576 CACGTGTTGATGCAAGCAGAA 60.003 47.619 7.58 0.00 28.24 3.02
536 1738 0.587768 TCACGTGTTGATGCAAGCAG 59.412 50.000 16.51 0.00 28.24 4.24
538 1740 0.867746 TCTCACGTGTTGATGCAAGC 59.132 50.000 16.51 0.00 32.17 4.01
542 1744 1.629013 TCGATCTCACGTGTTGATGC 58.371 50.000 23.56 16.14 32.17 3.91
543 1745 2.465474 CGATCGATCTCACGTGTTGATG 59.535 50.000 22.43 17.26 32.17 3.07
545 1747 1.202143 CCGATCGATCTCACGTGTTGA 60.202 52.381 22.43 15.09 34.70 3.18
548 1750 1.329906 GTACCGATCGATCTCACGTGT 59.670 52.381 22.43 12.04 34.70 4.49
550 1752 0.580578 CGTACCGATCGATCTCACGT 59.419 55.000 22.43 14.58 34.70 4.49
559 2876 2.479275 TCTTCATCTAGCGTACCGATCG 59.521 50.000 8.51 8.51 0.00 3.69
565 2882 4.358494 ACTGTGTCTTCATCTAGCGTAC 57.642 45.455 0.00 0.00 0.00 3.67
566 2883 4.939439 TGTACTGTGTCTTCATCTAGCGTA 59.061 41.667 0.00 0.00 0.00 4.42
567 2884 3.756963 TGTACTGTGTCTTCATCTAGCGT 59.243 43.478 0.00 0.00 0.00 5.07
568 2885 4.099120 GTGTACTGTGTCTTCATCTAGCG 58.901 47.826 0.00 0.00 0.00 4.26
569 2886 4.099120 CGTGTACTGTGTCTTCATCTAGC 58.901 47.826 0.00 0.00 0.00 3.42
570 2887 5.298197 ACGTGTACTGTGTCTTCATCTAG 57.702 43.478 0.00 0.00 0.00 2.43
571 2888 5.936372 AGTACGTGTACTGTGTCTTCATCTA 59.064 40.000 11.69 0.00 44.11 1.98
572 2889 4.760715 AGTACGTGTACTGTGTCTTCATCT 59.239 41.667 11.69 0.00 44.11 2.90
573 2890 5.044428 AGTACGTGTACTGTGTCTTCATC 57.956 43.478 11.69 0.00 44.11 2.92
574 2891 5.704515 AGTAGTACGTGTACTGTGTCTTCAT 59.295 40.000 20.13 0.00 45.25 2.57
575 2892 5.059161 AGTAGTACGTGTACTGTGTCTTCA 58.941 41.667 20.13 0.00 45.25 3.02
576 2893 5.604010 AGTAGTACGTGTACTGTGTCTTC 57.396 43.478 20.13 4.87 45.25 2.87
577 2894 6.226787 ACTAGTAGTACGTGTACTGTGTCTT 58.773 40.000 20.13 4.72 45.25 3.01
578 2895 5.788450 ACTAGTAGTACGTGTACTGTGTCT 58.212 41.667 20.13 14.66 45.25 3.41
579 2896 5.866633 AGACTAGTAGTACGTGTACTGTGTC 59.133 44.000 20.13 22.62 45.25 3.67
580 2897 5.788450 AGACTAGTAGTACGTGTACTGTGT 58.212 41.667 20.13 15.98 45.25 3.72
581 2898 7.032580 AGTAGACTAGTAGTACGTGTACTGTG 58.967 42.308 20.13 13.81 45.25 3.66
582 2899 7.164230 AGTAGACTAGTAGTACGTGTACTGT 57.836 40.000 20.13 10.80 45.25 3.55
583 2900 8.184848 TGTAGTAGACTAGTAGTACGTGTACTG 58.815 40.741 20.13 8.00 45.25 2.74
585 2902 7.968956 TGTGTAGTAGACTAGTAGTACGTGTAC 59.031 40.741 1.88 1.90 33.21 2.90
586 2903 7.968956 GTGTGTAGTAGACTAGTAGTACGTGTA 59.031 40.741 1.88 0.00 33.21 2.90
587 2904 6.809196 GTGTGTAGTAGACTAGTAGTACGTGT 59.191 42.308 1.88 0.00 33.21 4.49
588 2905 6.021074 CGTGTGTAGTAGACTAGTAGTACGTG 60.021 46.154 1.88 0.00 33.21 4.49
589 2906 6.030849 CGTGTGTAGTAGACTAGTAGTACGT 58.969 44.000 1.88 0.00 33.21 3.57
590 2907 6.030849 ACGTGTGTAGTAGACTAGTAGTACG 58.969 44.000 17.66 17.66 33.21 3.67
591 2908 7.542477 TCAACGTGTGTAGTAGACTAGTAGTAC 59.458 40.741 1.88 0.79 31.76 2.73
592 2909 7.602753 TCAACGTGTGTAGTAGACTAGTAGTA 58.397 38.462 1.88 0.00 0.00 1.82
593 2910 6.459066 TCAACGTGTGTAGTAGACTAGTAGT 58.541 40.000 1.37 1.37 0.00 2.73
594 2911 6.589523 ACTCAACGTGTGTAGTAGACTAGTAG 59.410 42.308 0.00 0.00 0.00 2.57
595 2912 6.459066 ACTCAACGTGTGTAGTAGACTAGTA 58.541 40.000 0.00 0.00 0.00 1.82
596 2913 5.303971 ACTCAACGTGTGTAGTAGACTAGT 58.696 41.667 0.00 0.00 0.00 2.57
597 2914 5.859521 ACTCAACGTGTGTAGTAGACTAG 57.140 43.478 0.00 0.00 0.00 2.57
598 2915 5.349817 GCTACTCAACGTGTGTAGTAGACTA 59.650 44.000 21.56 0.00 42.93 2.59
599 2916 4.153835 GCTACTCAACGTGTGTAGTAGACT 59.846 45.833 21.56 0.00 42.93 3.24
600 2917 4.083643 TGCTACTCAACGTGTGTAGTAGAC 60.084 45.833 21.56 15.66 42.93 2.59
601 2918 4.067192 TGCTACTCAACGTGTGTAGTAGA 58.933 43.478 21.56 10.41 42.93 2.59
602 2919 4.414999 TGCTACTCAACGTGTGTAGTAG 57.585 45.455 17.93 17.23 42.93 2.57
603 2920 5.048573 TGAATGCTACTCAACGTGTGTAGTA 60.049 40.000 17.93 15.52 42.93 1.82
604 2921 3.936372 ATGCTACTCAACGTGTGTAGT 57.064 42.857 17.93 9.83 42.93 2.73
605 2922 4.234574 TGAATGCTACTCAACGTGTGTAG 58.765 43.478 14.60 14.60 43.49 2.74
606 2923 4.022676 TCTGAATGCTACTCAACGTGTGTA 60.023 41.667 0.00 0.00 0.00 2.90
607 2924 3.059884 CTGAATGCTACTCAACGTGTGT 58.940 45.455 0.00 0.00 0.00 3.72
608 2925 3.317150 TCTGAATGCTACTCAACGTGTG 58.683 45.455 0.00 0.00 0.00 3.82
609 2926 3.579709 CTCTGAATGCTACTCAACGTGT 58.420 45.455 0.00 0.00 0.00 4.49
610 2927 2.926200 CCTCTGAATGCTACTCAACGTG 59.074 50.000 0.00 0.00 0.00 4.49
611 2928 2.675317 GCCTCTGAATGCTACTCAACGT 60.675 50.000 0.00 0.00 0.00 3.99
612 2929 1.929836 GCCTCTGAATGCTACTCAACG 59.070 52.381 0.00 0.00 0.00 4.10
613 2930 2.093235 AGGCCTCTGAATGCTACTCAAC 60.093 50.000 0.00 0.00 0.00 3.18
614 2931 2.093288 CAGGCCTCTGAATGCTACTCAA 60.093 50.000 0.00 0.00 43.49 3.02
615 2932 1.483827 CAGGCCTCTGAATGCTACTCA 59.516 52.381 0.00 0.00 43.49 3.41
616 2933 1.809651 GCAGGCCTCTGAATGCTACTC 60.810 57.143 0.00 0.00 43.49 2.59
617 2934 0.179936 GCAGGCCTCTGAATGCTACT 59.820 55.000 0.00 0.00 43.49 2.57
618 2935 1.156645 CGCAGGCCTCTGAATGCTAC 61.157 60.000 0.00 0.00 43.49 3.58
619 2936 1.144716 CGCAGGCCTCTGAATGCTA 59.855 57.895 0.00 0.00 43.49 3.49
620 2937 1.617018 TACGCAGGCCTCTGAATGCT 61.617 55.000 0.00 0.00 43.49 3.79
621 2938 1.153369 TACGCAGGCCTCTGAATGC 60.153 57.895 0.00 1.25 43.49 3.56
622 2939 0.108186 TGTACGCAGGCCTCTGAATG 60.108 55.000 0.00 0.00 43.49 2.67
623 2940 0.108138 GTGTACGCAGGCCTCTGAAT 60.108 55.000 0.00 0.00 43.49 2.57
624 2941 1.292223 GTGTACGCAGGCCTCTGAA 59.708 57.895 0.00 0.00 43.49 3.02
625 2942 2.970639 GTGTACGCAGGCCTCTGA 59.029 61.111 0.00 0.00 43.49 3.27
626 2943 1.929806 TACGTGTACGCAGGCCTCTG 61.930 60.000 0.00 0.00 44.43 3.35
627 2944 1.676635 TACGTGTACGCAGGCCTCT 60.677 57.895 0.00 0.00 44.43 3.69
628 2945 1.515736 GTACGTGTACGCAGGCCTC 60.516 63.158 0.00 0.00 44.43 4.70
629 2946 1.975407 AGTACGTGTACGCAGGCCT 60.975 57.895 0.00 0.00 44.43 5.19
630 2947 1.804326 CAGTACGTGTACGCAGGCC 60.804 63.158 7.29 0.00 44.43 5.19
631 2948 2.442188 GCAGTACGTGTACGCAGGC 61.442 63.158 7.29 10.67 44.43 4.85
632 2949 0.797249 GAGCAGTACGTGTACGCAGG 60.797 60.000 20.52 8.71 44.43 4.85
633 2950 0.168348 AGAGCAGTACGTGTACGCAG 59.832 55.000 20.52 10.76 44.43 5.18
634 2951 0.109919 CAGAGCAGTACGTGTACGCA 60.110 55.000 20.52 0.00 44.43 5.24
635 2952 0.797249 CCAGAGCAGTACGTGTACGC 60.797 60.000 14.66 14.66 44.43 4.42
636 2953 0.797249 GCCAGAGCAGTACGTGTACG 60.797 60.000 0.00 2.43 40.80 3.67
637 2954 0.458025 GGCCAGAGCAGTACGTGTAC 60.458 60.000 0.00 1.90 42.56 2.90
638 2955 0.896479 TGGCCAGAGCAGTACGTGTA 60.896 55.000 0.00 0.00 42.56 2.90
639 2956 1.544825 ATGGCCAGAGCAGTACGTGT 61.545 55.000 13.05 0.00 42.56 4.49
655 2972 3.242837 CGTGTGCATGACCTGATTTATGG 60.243 47.826 0.00 0.00 0.00 2.74
663 3058 1.004560 ACTCCGTGTGCATGACCTG 60.005 57.895 0.00 0.00 0.00 4.00
670 3065 2.030412 AATGCGACTCCGTGTGCA 59.970 55.556 0.00 0.00 37.21 4.57
751 3160 2.134287 GTGAGGCGAGGCTGGGATA 61.134 63.158 3.24 0.00 0.00 2.59
776 3190 4.281688 CCCCTATTTATTGCCATGGAACTG 59.718 45.833 18.40 0.00 0.00 3.16
890 3304 6.231211 TCGCTTTCTTGAACTTTATTCTCCT 58.769 36.000 0.00 0.00 0.00 3.69
949 3369 3.995809 TACGGGCTTCTGGAGGGGG 62.996 68.421 0.00 0.00 0.00 5.40
953 3373 1.439644 GCTCTACGGGCTTCTGGAG 59.560 63.158 0.00 0.00 0.00 3.86
979 3407 1.044611 GCTCCTCCGCTTCTTCCTAT 58.955 55.000 0.00 0.00 0.00 2.57
1026 3466 0.041238 TCGGTTCTCCCTCCACATCT 59.959 55.000 0.00 0.00 0.00 2.90
1041 3481 3.989698 CTTGCGCTGATCCGTCGGT 62.990 63.158 11.88 0.00 33.06 4.69
1119 3568 1.349357 GGCTCTTTGAGGTTGTCTCCT 59.651 52.381 0.00 0.00 41.76 3.69
1121 3570 2.550180 GTTGGCTCTTTGAGGTTGTCTC 59.450 50.000 0.00 0.00 42.74 3.36
1122 3571 2.576615 GTTGGCTCTTTGAGGTTGTCT 58.423 47.619 0.00 0.00 0.00 3.41
1123 3572 1.264288 CGTTGGCTCTTTGAGGTTGTC 59.736 52.381 0.00 0.00 0.00 3.18
1124 3573 1.308998 CGTTGGCTCTTTGAGGTTGT 58.691 50.000 0.00 0.00 0.00 3.32
1125 3574 0.593128 CCGTTGGCTCTTTGAGGTTG 59.407 55.000 0.00 0.00 0.00 3.77
1126 3575 0.472471 TCCGTTGGCTCTTTGAGGTT 59.528 50.000 0.00 0.00 0.00 3.50
1127 3576 0.693049 ATCCGTTGGCTCTTTGAGGT 59.307 50.000 0.00 0.00 0.00 3.85
1128 3577 1.339055 TGATCCGTTGGCTCTTTGAGG 60.339 52.381 0.00 0.00 0.00 3.86
1129 3578 2.005451 CTGATCCGTTGGCTCTTTGAG 58.995 52.381 0.00 0.00 0.00 3.02
1130 3579 1.623311 TCTGATCCGTTGGCTCTTTGA 59.377 47.619 0.00 0.00 0.00 2.69
1131 3580 2.005451 CTCTGATCCGTTGGCTCTTTG 58.995 52.381 0.00 0.00 0.00 2.77
1132 3581 1.625818 ACTCTGATCCGTTGGCTCTTT 59.374 47.619 0.00 0.00 0.00 2.52
1133 3582 1.270907 ACTCTGATCCGTTGGCTCTT 58.729 50.000 0.00 0.00 0.00 2.85
1134 3583 2.145397 TACTCTGATCCGTTGGCTCT 57.855 50.000 0.00 0.00 0.00 4.09
1135 3584 2.482142 CCTTACTCTGATCCGTTGGCTC 60.482 54.545 0.00 0.00 0.00 4.70
1136 3585 1.482593 CCTTACTCTGATCCGTTGGCT 59.517 52.381 0.00 0.00 0.00 4.75
1137 3586 1.480954 TCCTTACTCTGATCCGTTGGC 59.519 52.381 0.00 0.00 0.00 4.52
1138 3587 2.101582 CCTCCTTACTCTGATCCGTTGG 59.898 54.545 0.00 0.00 0.00 3.77
1139 3588 3.024547 TCCTCCTTACTCTGATCCGTTG 58.975 50.000 0.00 0.00 0.00 4.10
1140 3589 3.292460 CTCCTCCTTACTCTGATCCGTT 58.708 50.000 0.00 0.00 0.00 4.44
1141 3590 2.423660 CCTCCTCCTTACTCTGATCCGT 60.424 54.545 0.00 0.00 0.00 4.69
1142 3591 2.158593 TCCTCCTCCTTACTCTGATCCG 60.159 54.545 0.00 0.00 0.00 4.18
1143 3592 3.496331 CTCCTCCTCCTTACTCTGATCC 58.504 54.545 0.00 0.00 0.00 3.36
1144 3593 2.890945 GCTCCTCCTCCTTACTCTGATC 59.109 54.545 0.00 0.00 0.00 2.92
1145 3594 2.751479 CGCTCCTCCTCCTTACTCTGAT 60.751 54.545 0.00 0.00 0.00 2.90
1146 3595 1.408961 CGCTCCTCCTCCTTACTCTGA 60.409 57.143 0.00 0.00 0.00 3.27
1147 3596 1.028905 CGCTCCTCCTCCTTACTCTG 58.971 60.000 0.00 0.00 0.00 3.35
1148 3597 0.106419 CCGCTCCTCCTCCTTACTCT 60.106 60.000 0.00 0.00 0.00 3.24
1149 3598 1.740332 GCCGCTCCTCCTCCTTACTC 61.740 65.000 0.00 0.00 0.00 2.59
1150 3599 1.758906 GCCGCTCCTCCTCCTTACT 60.759 63.158 0.00 0.00 0.00 2.24
1151 3600 2.816012 GCCGCTCCTCCTCCTTAC 59.184 66.667 0.00 0.00 0.00 2.34
1152 3601 2.833582 CGCCGCTCCTCCTCCTTA 60.834 66.667 0.00 0.00 0.00 2.69
1166 3615 4.779733 TGTCTCCCTCCTCCCGCC 62.780 72.222 0.00 0.00 0.00 6.13
1203 3652 3.997064 CTCGTCCTCCTTGCGCTGG 62.997 68.421 9.73 11.53 0.00 4.85
1218 3667 2.163509 TCAGACTTGTCCTCCTTCTCG 58.836 52.381 0.00 0.00 0.00 4.04
1304 3852 2.172483 CTTGTCCACCTCCACCTCCG 62.172 65.000 0.00 0.00 0.00 4.63
1435 3983 2.815647 GAGGTACCGCAGCAGCAC 60.816 66.667 11.20 0.00 42.27 4.40
1637 4188 6.319658 TGATCCAGAAATGAGAAATGCTTACC 59.680 38.462 0.00 0.00 0.00 2.85
1639 4190 8.529424 AATGATCCAGAAATGAGAAATGCTTA 57.471 30.769 0.00 0.00 0.00 3.09
1661 4216 3.865745 AGCGTCTTCGTCAATTAGGAATG 59.134 43.478 0.00 0.00 39.49 2.67
1666 4221 3.304559 CCAAGAGCGTCTTCGTCAATTAG 59.695 47.826 0.00 0.00 33.78 1.73
1667 4222 3.250744 CCAAGAGCGTCTTCGTCAATTA 58.749 45.455 0.00 0.00 33.78 1.40
1668 4223 2.069273 CCAAGAGCGTCTTCGTCAATT 58.931 47.619 0.00 0.00 33.78 2.32
1773 4331 2.359967 CCCTTCCCTCGGAGTGGTC 61.360 68.421 4.02 0.00 39.97 4.02
1774 4332 2.284699 CCCTTCCCTCGGAGTGGT 60.285 66.667 4.02 0.00 39.97 4.16
1775 4333 3.787001 GCCCTTCCCTCGGAGTGG 61.787 72.222 4.02 5.32 41.51 4.00
1928 4490 1.610522 CCAAAGGTCACCTGCTTTCAG 59.389 52.381 0.00 0.00 40.02 3.02
2000 4572 1.372499 CCTCCGCGAAGAACGTCAA 60.372 57.895 8.23 0.00 44.60 3.18
2012 4584 1.086634 GTGATCAGTCAAGCCTCCGC 61.087 60.000 0.00 0.00 35.80 5.54
2015 4587 3.540314 AGATGTGATCAGTCAAGCCTC 57.460 47.619 0.00 0.00 35.80 4.70
2018 4590 2.745821 TGCAAGATGTGATCAGTCAAGC 59.254 45.455 0.00 6.70 35.80 4.01
2052 4629 7.997107 CTGTAACACACACAGTAGTTCTTAA 57.003 36.000 0.00 0.00 38.86 1.85
2063 4640 5.963594 TGTACTAACACTGTAACACACACA 58.036 37.500 0.00 0.00 32.33 3.72
2064 4641 5.051240 GCTGTACTAACACTGTAACACACAC 60.051 44.000 0.00 0.00 32.33 3.82
2123 4700 5.186409 AGTTAGCAGATAAGTTGAACGGGTA 59.814 40.000 0.00 0.00 0.00 3.69
2127 4704 6.073222 ACCAAAGTTAGCAGATAAGTTGAACG 60.073 38.462 0.00 0.00 37.15 3.95
2129 4706 8.154856 ACTACCAAAGTTAGCAGATAAGTTGAA 58.845 33.333 0.00 0.00 37.15 2.69
2144 4721 5.469084 GCTGTAGCAGTTAACTACCAAAGTT 59.531 40.000 8.04 0.00 45.01 2.66
2147 4724 4.202377 TGGCTGTAGCAGTTAACTACCAAA 60.202 41.667 8.04 0.00 44.36 3.28
2170 4747 7.227910 ACATCACTTGTAGTAAAACGGACAAAT 59.772 33.333 0.00 0.00 36.57 2.32
2174 4751 5.464389 ACACATCACTTGTAGTAAAACGGAC 59.536 40.000 0.00 0.00 36.57 4.79
2175 4752 5.603596 ACACATCACTTGTAGTAAAACGGA 58.396 37.500 0.00 0.00 36.57 4.69
2176 4753 5.917541 ACACATCACTTGTAGTAAAACGG 57.082 39.130 0.00 0.00 36.57 4.44
2178 4755 6.844279 CGACAACACATCACTTGTAGTAAAAC 59.156 38.462 0.00 0.00 36.57 2.43
2179 4756 6.018588 CCGACAACACATCACTTGTAGTAAAA 60.019 38.462 0.00 0.00 36.57 1.52
2182 4759 4.038282 ACCGACAACACATCACTTGTAGTA 59.962 41.667 0.00 0.00 36.57 1.82
2183 4760 3.181469 ACCGACAACACATCACTTGTAGT 60.181 43.478 0.00 0.00 36.57 2.73
2184 4761 3.184379 CACCGACAACACATCACTTGTAG 59.816 47.826 0.00 0.00 36.57 2.74
2185 4762 3.127589 CACCGACAACACATCACTTGTA 58.872 45.455 0.00 0.00 36.57 2.41
2186 4763 1.939934 CACCGACAACACATCACTTGT 59.060 47.619 0.00 0.00 39.91 3.16
2187 4764 1.264020 CCACCGACAACACATCACTTG 59.736 52.381 0.00 0.00 0.00 3.16
2198 4775 0.748450 AAAGACGAGACCACCGACAA 59.252 50.000 0.00 0.00 0.00 3.18
2214 4798 7.308782 ACAAACACAGAGTTCTTAGTGAAAG 57.691 36.000 6.61 0.00 40.26 2.62
2220 4804 7.707035 AGAACAGTACAAACACAGAGTTCTTAG 59.293 37.037 0.00 0.00 40.90 2.18
2236 4821 5.128171 ACCAACAGTGTAGAAGAACAGTACA 59.872 40.000 0.00 0.00 31.76 2.90
2251 4836 5.296780 ACAGAGACAAAACATACCAACAGTG 59.703 40.000 0.00 0.00 0.00 3.66
2272 4859 6.900568 TCAGGTTTGCATTTACAAAAACAG 57.099 33.333 0.00 0.00 40.99 3.16
2281 4868 5.735922 GCAGTCAAGTTCAGGTTTGCATTTA 60.736 40.000 0.00 0.00 0.00 1.40
2284 4871 2.035066 GCAGTCAAGTTCAGGTTTGCAT 59.965 45.455 0.00 0.00 0.00 3.96
2328 4922 3.515502 AGAAGCAGGCTGAATACTGTACA 59.484 43.478 20.86 0.00 37.07 2.90
2329 4923 4.116238 GAGAAGCAGGCTGAATACTGTAC 58.884 47.826 20.86 0.00 37.07 2.90
2330 4924 4.026744 AGAGAAGCAGGCTGAATACTGTA 58.973 43.478 20.86 0.00 37.07 2.74
2331 4925 2.836981 AGAGAAGCAGGCTGAATACTGT 59.163 45.455 20.86 6.95 37.07 3.55
2332 4926 3.196463 CAGAGAAGCAGGCTGAATACTG 58.804 50.000 20.86 15.19 37.76 2.74
2333 4927 2.170187 CCAGAGAAGCAGGCTGAATACT 59.830 50.000 20.86 10.93 0.00 2.12
2334 4928 2.093235 ACCAGAGAAGCAGGCTGAATAC 60.093 50.000 20.86 6.01 0.00 1.89
2335 4929 2.093288 CACCAGAGAAGCAGGCTGAATA 60.093 50.000 20.86 0.00 0.00 1.75
2336 4930 0.990374 ACCAGAGAAGCAGGCTGAAT 59.010 50.000 20.86 5.27 0.00 2.57
2342 4947 2.702478 TCCATATCACCAGAGAAGCAGG 59.298 50.000 0.00 0.00 0.00 4.85
2346 4951 6.054295 CCTCTTTTCCATATCACCAGAGAAG 58.946 44.000 0.00 0.00 0.00 2.85
2352 4957 5.726308 TCTCTTCCTCTTTTCCATATCACCA 59.274 40.000 0.00 0.00 0.00 4.17
2409 5015 6.349777 GGCCAGATACTCATACTGTCATACTC 60.350 46.154 0.00 0.00 0.00 2.59
2410 5016 5.478679 GGCCAGATACTCATACTGTCATACT 59.521 44.000 0.00 0.00 0.00 2.12
2411 5017 5.243954 TGGCCAGATACTCATACTGTCATAC 59.756 44.000 0.00 0.00 0.00 2.39
2412 5018 5.243954 GTGGCCAGATACTCATACTGTCATA 59.756 44.000 5.11 0.00 0.00 2.15
2413 5019 4.039730 GTGGCCAGATACTCATACTGTCAT 59.960 45.833 5.11 0.00 0.00 3.06
2427 5035 6.041979 AGTCAAATAAAACAAAGTGGCCAGAT 59.958 34.615 5.11 0.00 0.00 2.90
2432 5040 5.596845 TCCAGTCAAATAAAACAAAGTGGC 58.403 37.500 0.00 0.00 0.00 5.01
2436 5044 8.885494 TCCAATTCCAGTCAAATAAAACAAAG 57.115 30.769 0.00 0.00 0.00 2.77
2466 5074 0.773644 ACAAGCAGGTCAACCAGGAT 59.226 50.000 1.33 0.00 38.89 3.24
2478 5095 1.382522 AATGGCCGACATACAAGCAG 58.617 50.000 0.00 0.00 39.40 4.24
2485 5102 2.115427 TCTCTCCAAATGGCCGACATA 58.885 47.619 0.00 0.00 39.40 2.29
2517 5138 2.614829 ATGATTCCGTTAGAACCGGG 57.385 50.000 6.32 0.00 45.51 5.73
2521 5142 4.945246 TCCTGCTATGATTCCGTTAGAAC 58.055 43.478 0.00 0.00 37.29 3.01
2525 5146 5.542635 ACCTATTCCTGCTATGATTCCGTTA 59.457 40.000 0.00 0.00 0.00 3.18
2534 5155 5.237815 TCGCAATAACCTATTCCTGCTATG 58.762 41.667 0.00 0.00 0.00 2.23
2539 5164 5.201713 TCTCTCGCAATAACCTATTCCTG 57.798 43.478 0.00 0.00 0.00 3.86
2544 5169 9.482627 CTTAAGATTTCTCTCGCAATAACCTAT 57.517 33.333 0.00 0.00 0.00 2.57
2556 5188 5.869753 TGTTGCTGCTTAAGATTTCTCTC 57.130 39.130 6.67 0.00 0.00 3.20
2693 5333 0.237498 GGTCAGTACTTTGTTGCGGC 59.763 55.000 0.00 0.00 0.00 6.53
2694 5334 1.531149 CTGGTCAGTACTTTGTTGCGG 59.469 52.381 0.00 0.00 0.00 5.69
2695 5335 2.032894 CACTGGTCAGTACTTTGTTGCG 60.033 50.000 3.06 0.00 40.20 4.85
2696 5336 2.287009 GCACTGGTCAGTACTTTGTTGC 60.287 50.000 3.06 0.00 40.20 4.17
2697 5337 2.942376 TGCACTGGTCAGTACTTTGTTG 59.058 45.455 3.06 0.00 40.20 3.33
2700 5340 2.485426 CCATGCACTGGTCAGTACTTTG 59.515 50.000 3.06 1.69 40.20 2.77
2736 5376 3.057315 CCATGTCGTCTCATTGCCTTTTT 60.057 43.478 0.00 0.00 0.00 1.94
2737 5377 2.489329 CCATGTCGTCTCATTGCCTTTT 59.511 45.455 0.00 0.00 0.00 2.27
2738 5378 2.086869 CCATGTCGTCTCATTGCCTTT 58.913 47.619 0.00 0.00 0.00 3.11
2739 5379 1.679944 CCCATGTCGTCTCATTGCCTT 60.680 52.381 0.00 0.00 0.00 4.35
2740 5380 0.107508 CCCATGTCGTCTCATTGCCT 60.108 55.000 0.00 0.00 0.00 4.75
2741 5381 1.718757 GCCCATGTCGTCTCATTGCC 61.719 60.000 0.00 0.00 0.00 4.52
2742 5382 1.026182 TGCCCATGTCGTCTCATTGC 61.026 55.000 0.00 0.00 0.00 3.56
2743 5383 1.332686 CATGCCCATGTCGTCTCATTG 59.667 52.381 0.13 0.00 34.23 2.82
2744 5384 1.671979 CATGCCCATGTCGTCTCATT 58.328 50.000 0.13 0.00 34.23 2.57
2745 5385 0.816825 GCATGCCCATGTCGTCTCAT 60.817 55.000 6.36 0.00 40.80 2.90
2746 5386 1.450134 GCATGCCCATGTCGTCTCA 60.450 57.895 6.36 0.00 40.80 3.27
2747 5387 2.182842 GGCATGCCCATGTCGTCTC 61.183 63.158 27.24 0.00 40.80 3.36
2748 5388 2.124570 GGCATGCCCATGTCGTCT 60.125 61.111 27.24 0.00 40.80 4.18
2792 5434 2.644676 GGTGGAGTTGGCCTTAGATTC 58.355 52.381 3.32 0.00 0.00 2.52
2793 5435 1.065418 CGGTGGAGTTGGCCTTAGATT 60.065 52.381 3.32 0.00 0.00 2.40
2794 5436 0.541863 CGGTGGAGTTGGCCTTAGAT 59.458 55.000 3.32 0.00 0.00 1.98
2795 5437 1.980052 CGGTGGAGTTGGCCTTAGA 59.020 57.895 3.32 0.00 0.00 2.10
2796 5438 1.745489 GCGGTGGAGTTGGCCTTAG 60.745 63.158 3.32 0.00 0.00 2.18
2797 5439 2.349755 GCGGTGGAGTTGGCCTTA 59.650 61.111 3.32 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.