Multiple sequence alignment - TraesCS2D01G527500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G527500 chr2D 100.000 3293 0 0 1 3293 615151575 615148283 0.000000e+00 6082.0
1 TraesCS2D01G527500 chr2D 88.770 187 19 2 1 185 126970623 126970809 9.190000e-56 228.0
2 TraesCS2D01G527500 chr2A 95.544 1324 47 3 761 2072 745300158 745298835 0.000000e+00 2108.0
3 TraesCS2D01G527500 chr2A 81.854 1003 120 29 2146 3130 745298819 745297861 0.000000e+00 787.0
4 TraesCS2D01G527500 chr2A 94.534 311 17 0 295 605 745301781 745301471 6.390000e-132 481.0
5 TraesCS2D01G527500 chr2A 90.811 185 16 1 1 184 739692749 739692933 2.540000e-61 246.0
6 TraesCS2D01G527500 chr2A 91.160 181 15 1 1 181 31880653 31880474 9.130000e-61 244.0
7 TraesCS2D01G527500 chr2A 87.898 157 19 0 3091 3247 419206977 419206821 5.610000e-43 185.0
8 TraesCS2D01G527500 chr2A 97.273 110 1 1 186 295 745302050 745301943 5.610000e-43 185.0
9 TraesCS2D01G527500 chr2B 94.020 1020 49 3 1065 2072 749687405 749686386 0.000000e+00 1535.0
10 TraesCS2D01G527500 chr2B 91.883 616 32 11 183 793 749690397 749689795 0.000000e+00 845.0
11 TraesCS2D01G527500 chr2B 94.953 317 14 2 780 1096 749687787 749687473 2.280000e-136 496.0
12 TraesCS2D01G527500 chr2B 87.241 290 20 9 2707 2995 749685522 749685249 6.860000e-82 315.0
13 TraesCS2D01G527500 chr2B 89.637 193 15 5 1 190 473766370 473766180 1.180000e-59 241.0
14 TraesCS2D01G527500 chr2B 88.435 147 16 1 516 661 741918287 741918141 3.380000e-40 176.0
15 TraesCS2D01G527500 chr5D 92.818 181 12 1 1 181 491269564 491269743 9.060000e-66 261.0
16 TraesCS2D01G527500 chr7B 91.667 180 15 0 1 180 601118399 601118220 1.960000e-62 250.0
17 TraesCS2D01G527500 chr7B 95.238 63 1 2 2086 2146 620597890 620597828 7.520000e-17 99.0
18 TraesCS2D01G527500 chr7D 91.209 182 15 1 1 181 567338150 567338331 2.540000e-61 246.0
19 TraesCS2D01G527500 chr7D 84.286 70 4 3 2086 2148 20308221 20308152 9.870000e-06 62.1
20 TraesCS2D01G527500 chr7D 85.246 61 6 3 2086 2145 25821459 25821401 3.550000e-05 60.2
21 TraesCS2D01G527500 chr7A 89.119 193 15 4 1 188 182859015 182858824 5.490000e-58 235.0
22 TraesCS2D01G527500 chr7A 89.130 184 20 0 1 184 646126844 646126661 2.560000e-56 230.0
23 TraesCS2D01G527500 chr7A 87.117 163 21 0 3091 3253 451519972 451519810 5.610000e-43 185.0
24 TraesCS2D01G527500 chr1B 86.782 174 22 1 3080 3252 325812719 325812546 3.350000e-45 193.0
25 TraesCS2D01G527500 chr1B 93.750 48 3 0 610 657 669776554 669776601 4.560000e-09 73.1
26 TraesCS2D01G527500 chr3A 87.730 163 20 0 3091 3253 739325013 739325175 1.210000e-44 191.0
27 TraesCS2D01G527500 chr3A 87.898 157 19 0 3091 3247 600921016 600920860 5.610000e-43 185.0
28 TraesCS2D01G527500 chr3A 85.915 71 2 4 2086 2149 549913157 549913088 5.900000e-08 69.4
29 TraesCS2D01G527500 chr1D 87.059 170 20 1 504 671 338533419 338533588 1.210000e-44 191.0
30 TraesCS2D01G527500 chr1D 87.261 157 20 0 3091 3247 125831082 125830926 2.610000e-41 180.0
31 TraesCS2D01G527500 chr5A 88.050 159 19 0 503 661 44303676 44303834 4.340000e-44 189.0
32 TraesCS2D01G527500 chr5A 86.503 163 21 1 3087 3248 48469036 48469198 9.390000e-41 178.0
33 TraesCS2D01G527500 chr5A 86.567 67 3 6 2086 2149 416182766 416182703 5.900000e-08 69.4
34 TraesCS2D01G527500 chr5B 86.875 160 19 2 503 661 700843953 700844111 9.390000e-41 178.0
35 TraesCS2D01G527500 chr4B 87.261 157 19 1 3091 3247 532435002 532435157 9.390000e-41 178.0
36 TraesCS2D01G527500 chr1A 86.792 159 20 1 3090 3247 564367239 564367397 3.380000e-40 176.0
37 TraesCS2D01G527500 chr6B 86.928 153 17 2 520 671 565269254 565269104 5.650000e-38 169.0
38 TraesCS2D01G527500 chrUn 85.714 147 20 1 516 661 412734098 412734244 1.580000e-33 154.0
39 TraesCS2D01G527500 chr3D 80.795 151 29 0 504 654 15336938 15337088 5.770000e-23 119.0
40 TraesCS2D01G527500 chr3D 97.368 38 1 0 2778 2815 7412111 7412148 7.630000e-07 65.8
41 TraesCS2D01G527500 chr4D 90.196 51 3 2 2113 2161 502678705 502678655 7.630000e-07 65.8
42 TraesCS2D01G527500 chr3B 90.196 51 4 1 2107 2156 738693134 738693184 7.630000e-07 65.8
43 TraesCS2D01G527500 chr3B 89.796 49 4 1 2098 2145 790743118 790743166 9.870000e-06 62.1
44 TraesCS2D01G527500 chr6D 87.719 57 3 1 2086 2142 363382425 363382373 2.740000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G527500 chr2D 615148283 615151575 3292 True 6082.00 6082 100.00000 1 3293 1 chr2D.!!$R1 3292
1 TraesCS2D01G527500 chr2A 745297861 745302050 4189 True 890.25 2108 92.30125 186 3130 4 chr2A.!!$R3 2944
2 TraesCS2D01G527500 chr2B 749685249 749690397 5148 True 797.75 1535 92.02425 183 2995 4 chr2B.!!$R3 2812

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
782 2105 0.332972 AGAAGGAATGAACCAGGGCC 59.667 55.0 0.0 0.0 0.00 5.80 F
1931 5385 0.813610 CATGCGGGGTTGCTTCGATA 60.814 55.0 0.0 0.0 35.36 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2079 5533 0.040646 TGGACGGAGGGAGTGTGTAT 59.959 55.0 0.00 0.0 0.00 2.29 R
2922 6929 0.320858 TAGCGACAATTTGCCGGACA 60.321 50.0 5.05 0.0 31.49 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.573664 TTACTGTTCATCATTCAAACCTGG 57.426 37.500 0.00 0.00 0.00 4.45
25 26 4.473444 ACTGTTCATCATTCAAACCTGGT 58.527 39.130 0.00 0.00 0.00 4.00
26 27 4.520492 ACTGTTCATCATTCAAACCTGGTC 59.480 41.667 0.00 0.00 0.00 4.02
27 28 4.468713 TGTTCATCATTCAAACCTGGTCA 58.531 39.130 0.00 0.00 0.00 4.02
28 29 4.892345 TGTTCATCATTCAAACCTGGTCAA 59.108 37.500 0.00 0.00 0.00 3.18
29 30 5.221224 TGTTCATCATTCAAACCTGGTCAAC 60.221 40.000 0.00 0.00 0.00 3.18
30 31 4.468713 TCATCATTCAAACCTGGTCAACA 58.531 39.130 0.00 0.00 0.00 3.33
31 32 5.078949 TCATCATTCAAACCTGGTCAACAT 58.921 37.500 0.00 0.00 0.00 2.71
32 33 4.852134 TCATTCAAACCTGGTCAACATG 57.148 40.909 0.00 1.36 0.00 3.21
33 34 3.573538 TCATTCAAACCTGGTCAACATGG 59.426 43.478 0.00 0.00 0.00 3.66
34 35 2.746279 TCAAACCTGGTCAACATGGT 57.254 45.000 0.00 0.00 33.73 3.55
35 36 2.582052 TCAAACCTGGTCAACATGGTC 58.418 47.619 0.00 0.00 31.94 4.02
36 37 2.092158 TCAAACCTGGTCAACATGGTCA 60.092 45.455 0.00 0.00 31.94 4.02
37 38 2.692557 CAAACCTGGTCAACATGGTCAA 59.307 45.455 0.00 0.00 31.94 3.18
38 39 2.746279 ACCTGGTCAACATGGTCAAA 57.254 45.000 0.00 0.00 0.00 2.69
39 40 2.306847 ACCTGGTCAACATGGTCAAAC 58.693 47.619 0.00 0.00 0.00 2.93
40 41 1.613437 CCTGGTCAACATGGTCAAACC 59.387 52.381 0.00 0.00 39.22 3.27
41 42 2.586425 CTGGTCAACATGGTCAAACCT 58.414 47.619 7.74 0.00 39.58 3.50
42 43 2.294233 CTGGTCAACATGGTCAAACCTG 59.706 50.000 7.74 4.19 39.58 4.00
43 44 1.613437 GGTCAACATGGTCAAACCTGG 59.387 52.381 0.00 0.00 39.58 4.45
44 45 2.306847 GTCAACATGGTCAAACCTGGT 58.693 47.619 0.00 0.00 39.58 4.00
45 46 2.293399 GTCAACATGGTCAAACCTGGTC 59.707 50.000 0.00 0.00 39.58 4.02
46 47 2.092158 TCAACATGGTCAAACCTGGTCA 60.092 45.455 0.00 0.00 39.58 4.02
47 48 2.692557 CAACATGGTCAAACCTGGTCAA 59.307 45.455 0.00 0.00 39.58 3.18
48 49 2.306847 ACATGGTCAAACCTGGTCAAC 58.693 47.619 0.00 0.00 39.58 3.18
49 50 2.091885 ACATGGTCAAACCTGGTCAACT 60.092 45.455 0.00 0.00 39.58 3.16
50 51 2.818751 TGGTCAAACCTGGTCAACTT 57.181 45.000 0.00 0.00 39.58 2.66
51 52 2.374184 TGGTCAAACCTGGTCAACTTG 58.626 47.619 0.00 0.72 39.58 3.16
52 53 1.067060 GGTCAAACCTGGTCAACTTGC 59.933 52.381 0.00 0.00 34.73 4.01
53 54 2.024414 GTCAAACCTGGTCAACTTGCT 58.976 47.619 0.00 0.00 0.00 3.91
54 55 2.427095 GTCAAACCTGGTCAACTTGCTT 59.573 45.455 0.00 0.00 0.00 3.91
55 56 3.630312 GTCAAACCTGGTCAACTTGCTTA 59.370 43.478 0.00 0.00 0.00 3.09
56 57 4.097286 GTCAAACCTGGTCAACTTGCTTAA 59.903 41.667 0.00 0.00 0.00 1.85
57 58 4.707448 TCAAACCTGGTCAACTTGCTTAAA 59.293 37.500 0.00 0.00 0.00 1.52
58 59 5.186021 TCAAACCTGGTCAACTTGCTTAAAA 59.814 36.000 0.00 0.00 0.00 1.52
59 60 5.869649 AACCTGGTCAACTTGCTTAAAAT 57.130 34.783 0.00 0.00 0.00 1.82
60 61 6.969993 AACCTGGTCAACTTGCTTAAAATA 57.030 33.333 0.00 0.00 0.00 1.40
61 62 7.539034 AACCTGGTCAACTTGCTTAAAATAT 57.461 32.000 0.00 0.00 0.00 1.28
62 63 6.924111 ACCTGGTCAACTTGCTTAAAATATG 58.076 36.000 0.00 0.00 0.00 1.78
63 64 6.071391 ACCTGGTCAACTTGCTTAAAATATGG 60.071 38.462 0.00 0.00 0.00 2.74
64 65 6.071391 CCTGGTCAACTTGCTTAAAATATGGT 60.071 38.462 0.00 0.00 0.00 3.55
65 66 7.296628 TGGTCAACTTGCTTAAAATATGGTT 57.703 32.000 0.00 0.00 0.00 3.67
66 67 7.731054 TGGTCAACTTGCTTAAAATATGGTTT 58.269 30.769 0.00 0.00 0.00 3.27
67 68 8.207545 TGGTCAACTTGCTTAAAATATGGTTTT 58.792 29.630 0.00 0.00 0.00 2.43
68 69 8.495148 GGTCAACTTGCTTAAAATATGGTTTTG 58.505 33.333 0.00 0.00 0.00 2.44
69 70 9.255304 GTCAACTTGCTTAAAATATGGTTTTGA 57.745 29.630 0.00 0.00 0.00 2.69
70 71 9.823647 TCAACTTGCTTAAAATATGGTTTTGAA 57.176 25.926 0.00 0.00 0.00 2.69
71 72 9.862585 CAACTTGCTTAAAATATGGTTTTGAAC 57.137 29.630 0.00 0.00 0.00 3.18
93 94 6.635030 ACCAAACTTATCTGGTTTTGAGAC 57.365 37.500 0.00 0.00 43.62 3.36
94 95 6.365520 ACCAAACTTATCTGGTTTTGAGACT 58.634 36.000 0.00 0.00 43.62 3.24
95 96 6.833933 ACCAAACTTATCTGGTTTTGAGACTT 59.166 34.615 0.00 0.00 43.62 3.01
96 97 7.141363 CCAAACTTATCTGGTTTTGAGACTTG 58.859 38.462 0.00 0.00 35.09 3.16
97 98 7.013274 CCAAACTTATCTGGTTTTGAGACTTGA 59.987 37.037 0.00 0.00 35.09 3.02
98 99 8.405531 CAAACTTATCTGGTTTTGAGACTTGAA 58.594 33.333 0.00 0.00 35.09 2.69
99 100 7.736447 ACTTATCTGGTTTTGAGACTTGAAG 57.264 36.000 0.00 0.00 0.00 3.02
100 101 6.712547 ACTTATCTGGTTTTGAGACTTGAAGG 59.287 38.462 0.00 0.00 0.00 3.46
101 102 4.771114 TCTGGTTTTGAGACTTGAAGGA 57.229 40.909 0.00 0.00 0.00 3.36
102 103 4.451900 TCTGGTTTTGAGACTTGAAGGAC 58.548 43.478 0.00 0.00 0.00 3.85
103 104 3.551846 TGGTTTTGAGACTTGAAGGACC 58.448 45.455 0.00 0.00 0.00 4.46
104 105 3.053991 TGGTTTTGAGACTTGAAGGACCA 60.054 43.478 0.00 0.00 32.66 4.02
105 106 3.951680 GGTTTTGAGACTTGAAGGACCAA 59.048 43.478 0.00 0.00 0.00 3.67
106 107 4.401202 GGTTTTGAGACTTGAAGGACCAAA 59.599 41.667 0.00 1.04 0.00 3.28
107 108 5.069119 GGTTTTGAGACTTGAAGGACCAAAT 59.931 40.000 0.00 0.00 0.00 2.32
108 109 5.772825 TTTGAGACTTGAAGGACCAAATG 57.227 39.130 0.00 0.00 0.00 2.32
109 110 4.437682 TGAGACTTGAAGGACCAAATGT 57.562 40.909 0.00 0.00 0.00 2.71
110 111 5.560722 TGAGACTTGAAGGACCAAATGTA 57.439 39.130 0.00 0.00 0.00 2.29
111 112 6.126863 TGAGACTTGAAGGACCAAATGTAT 57.873 37.500 0.00 0.00 0.00 2.29
112 113 7.252612 TGAGACTTGAAGGACCAAATGTATA 57.747 36.000 0.00 0.00 0.00 1.47
113 114 7.103641 TGAGACTTGAAGGACCAAATGTATAC 58.896 38.462 0.00 0.00 0.00 1.47
114 115 6.415573 AGACTTGAAGGACCAAATGTATACC 58.584 40.000 0.00 0.00 0.00 2.73
115 116 6.012858 AGACTTGAAGGACCAAATGTATACCA 60.013 38.462 0.00 0.00 0.00 3.25
116 117 6.548321 ACTTGAAGGACCAAATGTATACCAA 58.452 36.000 0.00 0.00 0.00 3.67
117 118 7.007723 ACTTGAAGGACCAAATGTATACCAAA 58.992 34.615 0.00 0.00 0.00 3.28
118 119 7.507616 ACTTGAAGGACCAAATGTATACCAAAA 59.492 33.333 0.00 0.00 0.00 2.44
119 120 7.841282 TGAAGGACCAAATGTATACCAAAAA 57.159 32.000 0.00 0.00 0.00 1.94
147 148 9.273016 TCTTGAAAGACCAAGTCTATACTTTTG 57.727 33.333 0.00 0.00 43.60 2.44
148 149 7.979444 TGAAAGACCAAGTCTATACTTTTGG 57.021 36.000 0.00 0.82 43.60 3.28
149 150 6.940298 TGAAAGACCAAGTCTATACTTTTGGG 59.060 38.462 7.00 0.68 43.60 4.12
150 151 5.437191 AGACCAAGTCTATACTTTTGGGG 57.563 43.478 7.00 0.39 43.60 4.96
151 152 5.098663 AGACCAAGTCTATACTTTTGGGGA 58.901 41.667 7.00 0.00 43.60 4.81
152 153 5.550403 AGACCAAGTCTATACTTTTGGGGAA 59.450 40.000 7.00 0.00 43.60 3.97
153 154 5.567430 ACCAAGTCTATACTTTTGGGGAAC 58.433 41.667 7.00 0.00 43.60 3.62
154 155 5.312443 ACCAAGTCTATACTTTTGGGGAACT 59.688 40.000 7.00 0.00 43.60 3.01
155 156 6.183361 ACCAAGTCTATACTTTTGGGGAACTT 60.183 38.462 7.00 0.00 43.60 2.66
156 157 6.151144 CCAAGTCTATACTTTTGGGGAACTTG 59.849 42.308 0.00 0.00 43.60 3.16
157 158 6.697641 AGTCTATACTTTTGGGGAACTTGA 57.302 37.500 0.00 0.00 29.00 3.02
158 159 6.712276 AGTCTATACTTTTGGGGAACTTGAG 58.288 40.000 0.00 0.00 29.00 3.02
159 160 5.880887 GTCTATACTTTTGGGGAACTTGAGG 59.119 44.000 0.00 0.00 0.00 3.86
160 161 2.381752 ACTTTTGGGGAACTTGAGGG 57.618 50.000 0.00 0.00 0.00 4.30
161 162 1.856920 ACTTTTGGGGAACTTGAGGGA 59.143 47.619 0.00 0.00 0.00 4.20
162 163 2.239400 CTTTTGGGGAACTTGAGGGAC 58.761 52.381 0.00 0.00 0.00 4.46
163 164 0.481128 TTTGGGGAACTTGAGGGACC 59.519 55.000 0.00 0.00 0.00 4.46
164 165 0.699577 TTGGGGAACTTGAGGGACCA 60.700 55.000 0.00 0.00 0.00 4.02
165 166 0.699577 TGGGGAACTTGAGGGACCAA 60.700 55.000 0.00 0.00 0.00 3.67
166 167 0.481128 GGGGAACTTGAGGGACCAAA 59.519 55.000 0.00 0.00 0.00 3.28
167 168 1.133294 GGGGAACTTGAGGGACCAAAA 60.133 52.381 0.00 0.00 0.00 2.44
168 169 2.673258 GGGAACTTGAGGGACCAAAAA 58.327 47.619 0.00 0.00 0.00 1.94
169 170 2.364324 GGGAACTTGAGGGACCAAAAAC 59.636 50.000 0.00 0.00 0.00 2.43
170 171 3.028130 GGAACTTGAGGGACCAAAAACA 58.972 45.455 0.00 0.00 0.00 2.83
171 172 3.641436 GGAACTTGAGGGACCAAAAACAT 59.359 43.478 0.00 0.00 0.00 2.71
172 173 4.830600 GGAACTTGAGGGACCAAAAACATA 59.169 41.667 0.00 0.00 0.00 2.29
173 174 5.278808 GGAACTTGAGGGACCAAAAACATAC 60.279 44.000 0.00 0.00 0.00 2.39
174 175 5.061721 ACTTGAGGGACCAAAAACATACT 57.938 39.130 0.00 0.00 0.00 2.12
175 176 5.454966 ACTTGAGGGACCAAAAACATACTT 58.545 37.500 0.00 0.00 0.00 2.24
176 177 5.897250 ACTTGAGGGACCAAAAACATACTTT 59.103 36.000 0.00 0.00 0.00 2.66
177 178 6.382859 ACTTGAGGGACCAAAAACATACTTTT 59.617 34.615 0.00 0.00 0.00 2.27
178 179 6.399639 TGAGGGACCAAAAACATACTTTTC 57.600 37.500 0.00 0.00 0.00 2.29
179 180 6.133356 TGAGGGACCAAAAACATACTTTTCT 58.867 36.000 0.00 0.00 0.00 2.52
180 181 6.264518 TGAGGGACCAAAAACATACTTTTCTC 59.735 38.462 0.00 0.00 0.00 2.87
181 182 6.133356 AGGGACCAAAAACATACTTTTCTCA 58.867 36.000 0.00 0.00 0.00 3.27
256 257 5.512753 TGACAAAAACTGAAGCAAGCATA 57.487 34.783 0.00 0.00 0.00 3.14
257 258 6.088016 TGACAAAAACTGAAGCAAGCATAT 57.912 33.333 0.00 0.00 0.00 1.78
459 623 4.798387 GGATGACACATTATTTCCGTTTGC 59.202 41.667 0.00 0.00 0.00 3.68
537 701 2.302260 TCAAAATTGAGTTGCCGACCA 58.698 42.857 0.00 0.00 32.50 4.02
567 731 8.728833 GGCAAACTATAGTCGTATAGAGTGTAT 58.271 37.037 5.70 0.00 40.48 2.29
572 736 4.728917 AGTCGTATAGAGTGTATCACGC 57.271 45.455 0.00 0.00 39.64 5.34
625 1558 0.460987 AGGATCTTTTGCCTCGCGAG 60.461 55.000 29.06 29.06 0.00 5.03
698 1635 5.462398 GTGATATTATCCGGTGACAACAGTC 59.538 44.000 0.00 0.00 0.00 3.51
706 1643 3.120199 CCGGTGACAACAGTCAATGAATC 60.120 47.826 0.00 0.00 43.37 2.52
717 1654 4.692625 CAGTCAATGAATCCAGAACGAACT 59.307 41.667 0.00 0.00 0.00 3.01
759 2082 4.685169 AGTAATGAACGAACTGGCATTG 57.315 40.909 0.00 0.00 33.45 2.82
782 2105 0.332972 AGAAGGAATGAACCAGGGCC 59.667 55.000 0.00 0.00 0.00 5.80
1150 4592 2.203294 AAAAGGGCGCGGTTGACT 60.203 55.556 8.83 0.00 0.00 3.41
1420 4871 2.283529 GGACTCCCTCCTGTCGCAA 61.284 63.158 0.00 0.00 35.89 4.85
1931 5385 0.813610 CATGCGGGGTTGCTTCGATA 60.814 55.000 0.00 0.00 35.36 2.92
2049 5503 3.682372 CGATCAATCGTCTGTCTCTCA 57.318 47.619 4.25 0.00 44.74 3.27
2072 5526 1.807742 CTCTCTCGGTCGAACACTTCT 59.192 52.381 0.00 0.00 0.00 2.85
2073 5527 3.001414 CTCTCTCGGTCGAACACTTCTA 58.999 50.000 0.00 0.00 0.00 2.10
2074 5528 2.740981 TCTCTCGGTCGAACACTTCTAC 59.259 50.000 0.00 0.00 0.00 2.59
2075 5529 2.483106 CTCTCGGTCGAACACTTCTACA 59.517 50.000 0.00 0.00 0.00 2.74
2076 5530 3.079578 TCTCGGTCGAACACTTCTACAT 58.920 45.455 0.00 0.00 0.00 2.29
2077 5531 4.256110 TCTCGGTCGAACACTTCTACATA 58.744 43.478 0.00 0.00 0.00 2.29
2078 5532 4.093998 TCTCGGTCGAACACTTCTACATAC 59.906 45.833 0.00 0.00 0.00 2.39
2079 5533 3.752747 TCGGTCGAACACTTCTACATACA 59.247 43.478 0.00 0.00 0.00 2.29
2080 5534 4.397103 TCGGTCGAACACTTCTACATACAT 59.603 41.667 0.00 0.00 0.00 2.29
2081 5535 5.585844 TCGGTCGAACACTTCTACATACATA 59.414 40.000 0.00 0.00 0.00 2.29
2082 5536 5.680229 CGGTCGAACACTTCTACATACATAC 59.320 44.000 0.00 0.00 0.00 2.39
2083 5537 6.558009 GGTCGAACACTTCTACATACATACA 58.442 40.000 0.00 0.00 0.00 2.29
2084 5538 6.471519 GGTCGAACACTTCTACATACATACAC 59.528 42.308 0.00 0.00 0.00 2.90
2085 5539 7.025365 GTCGAACACTTCTACATACATACACA 58.975 38.462 0.00 0.00 0.00 3.72
2086 5540 7.008086 GTCGAACACTTCTACATACATACACAC 59.992 40.741 0.00 0.00 0.00 3.82
2087 5541 7.027760 CGAACACTTCTACATACATACACACT 58.972 38.462 0.00 0.00 0.00 3.55
2088 5542 7.218393 CGAACACTTCTACATACATACACACTC 59.782 40.741 0.00 0.00 0.00 3.51
2089 5543 6.864342 ACACTTCTACATACATACACACTCC 58.136 40.000 0.00 0.00 0.00 3.85
2090 5544 6.127423 ACACTTCTACATACATACACACTCCC 60.127 42.308 0.00 0.00 0.00 4.30
2091 5545 6.096987 CACTTCTACATACATACACACTCCCT 59.903 42.308 0.00 0.00 0.00 4.20
2092 5546 6.321690 ACTTCTACATACATACACACTCCCTC 59.678 42.308 0.00 0.00 0.00 4.30
2093 5547 5.138276 TCTACATACATACACACTCCCTCC 58.862 45.833 0.00 0.00 0.00 4.30
2094 5548 2.693591 ACATACATACACACTCCCTCCG 59.306 50.000 0.00 0.00 0.00 4.63
2095 5549 2.519771 TACATACACACTCCCTCCGT 57.480 50.000 0.00 0.00 0.00 4.69
2096 5550 1.183549 ACATACACACTCCCTCCGTC 58.816 55.000 0.00 0.00 0.00 4.79
2097 5551 0.460311 CATACACACTCCCTCCGTCC 59.540 60.000 0.00 0.00 0.00 4.79
2098 5552 0.040646 ATACACACTCCCTCCGTCCA 59.959 55.000 0.00 0.00 0.00 4.02
2099 5553 0.040646 TACACACTCCCTCCGTCCAT 59.959 55.000 0.00 0.00 0.00 3.41
2100 5554 0.040646 ACACACTCCCTCCGTCCATA 59.959 55.000 0.00 0.00 0.00 2.74
2101 5555 1.191535 CACACTCCCTCCGTCCATAA 58.808 55.000 0.00 0.00 0.00 1.90
2102 5556 1.762957 CACACTCCCTCCGTCCATAAT 59.237 52.381 0.00 0.00 0.00 1.28
2103 5557 2.963101 CACACTCCCTCCGTCCATAATA 59.037 50.000 0.00 0.00 0.00 0.98
2104 5558 3.578716 CACACTCCCTCCGTCCATAATAT 59.421 47.826 0.00 0.00 0.00 1.28
2105 5559 4.770531 CACACTCCCTCCGTCCATAATATA 59.229 45.833 0.00 0.00 0.00 0.86
2106 5560 5.245301 CACACTCCCTCCGTCCATAATATAA 59.755 44.000 0.00 0.00 0.00 0.98
2107 5561 5.480772 ACACTCCCTCCGTCCATAATATAAG 59.519 44.000 0.00 0.00 0.00 1.73
2108 5562 5.715279 CACTCCCTCCGTCCATAATATAAGA 59.285 44.000 0.00 0.00 0.00 2.10
2109 5563 5.952947 ACTCCCTCCGTCCATAATATAAGAG 59.047 44.000 0.00 0.00 0.00 2.85
2110 5564 5.900437 TCCCTCCGTCCATAATATAAGAGT 58.100 41.667 0.00 0.00 0.00 3.24
2111 5565 7.036154 TCCCTCCGTCCATAATATAAGAGTA 57.964 40.000 0.00 0.00 0.00 2.59
2112 5566 7.472741 TCCCTCCGTCCATAATATAAGAGTAA 58.527 38.462 0.00 0.00 0.00 2.24
2113 5567 7.951806 TCCCTCCGTCCATAATATAAGAGTAAA 59.048 37.037 0.00 0.00 0.00 2.01
2114 5568 8.591072 CCCTCCGTCCATAATATAAGAGTAAAA 58.409 37.037 0.00 0.00 0.00 1.52
2115 5569 9.991906 CCTCCGTCCATAATATAAGAGTAAAAA 57.008 33.333 0.00 0.00 0.00 1.94
2137 5591 7.639162 AAAACGCTCTTATATTATGAGACGG 57.361 36.000 16.71 7.11 35.72 4.79
2138 5592 6.570672 AACGCTCTTATATTATGAGACGGA 57.429 37.500 16.71 0.00 35.72 4.69
2139 5593 6.184580 ACGCTCTTATATTATGAGACGGAG 57.815 41.667 16.71 6.33 35.72 4.63
2140 5594 5.124138 ACGCTCTTATATTATGAGACGGAGG 59.876 44.000 16.71 3.20 35.72 4.30
2141 5595 5.449314 CGCTCTTATATTATGAGACGGAGGG 60.449 48.000 0.00 0.00 33.20 4.30
2142 5596 5.163499 GCTCTTATATTATGAGACGGAGGGG 60.163 48.000 0.00 0.00 33.20 4.79
2155 5609 3.175594 ACGGAGGGGTAGATACAAAACA 58.824 45.455 0.00 0.00 0.00 2.83
2162 5616 3.000727 GGTAGATACAAAACAGCACGCT 58.999 45.455 0.00 0.00 0.00 5.07
2174 5628 3.011513 GCACGCTTGAATGCTTGAG 57.988 52.632 0.00 0.00 38.84 3.02
2177 5631 4.068302 GCTTGAATGCTTGAGCGC 57.932 55.556 0.00 0.00 45.83 5.92
2179 5633 0.729116 GCTTGAATGCTTGAGCGCTA 59.271 50.000 11.50 0.00 45.83 4.26
2184 5638 0.721718 AATGCTTGAGCGCTAACGAC 59.278 50.000 11.50 0.00 45.83 4.34
2191 5646 0.595310 GAGCGCTAACGACCATCTCC 60.595 60.000 11.50 0.00 43.93 3.71
2194 5649 1.066605 GCGCTAACGACCATCTCCTTA 59.933 52.381 0.00 0.00 43.93 2.69
2222 5679 4.415881 TTAAAAGCGAGCCTCCATATCA 57.584 40.909 0.00 0.00 0.00 2.15
2224 5681 2.246719 AAGCGAGCCTCCATATCAAC 57.753 50.000 0.00 0.00 0.00 3.18
2234 5691 7.519008 CGAGCCTCCATATCAACTTTCATTAAC 60.519 40.741 0.00 0.00 0.00 2.01
2235 5692 7.118723 AGCCTCCATATCAACTTTCATTAACA 58.881 34.615 0.00 0.00 0.00 2.41
2237 5694 7.917505 GCCTCCATATCAACTTTCATTAACAAG 59.082 37.037 0.00 0.00 0.00 3.16
2289 5747 8.830580 CAAAAAGACTCATAAAGAAGTCTCACA 58.169 33.333 5.57 0.00 40.31 3.58
2290 5748 8.964476 AAAAGACTCATAAAGAAGTCTCACAA 57.036 30.769 5.57 0.00 40.31 3.33
2307 5765 7.770897 AGTCTCACAAATATGAGGAATACAACC 59.229 37.037 3.10 0.00 45.30 3.77
2313 5771 8.026607 ACAAATATGAGGAATACAACCAAAACG 58.973 33.333 0.00 0.00 0.00 3.60
2326 5784 1.555477 CAAAACGTGGTGAAAGTGGC 58.445 50.000 0.00 0.00 0.00 5.01
2353 5811 9.487790 CAAATCTGGCCTTTTTATGAAACTTTA 57.512 29.630 3.32 0.00 0.00 1.85
2357 5815 6.220201 TGGCCTTTTTATGAAACTTTAGCAC 58.780 36.000 3.32 0.00 0.00 4.40
2415 5875 1.750778 CATTTACATGACACAGGGCCC 59.249 52.381 16.46 16.46 31.07 5.80
2416 5876 0.774276 TTTACATGACACAGGGCCCA 59.226 50.000 27.56 0.78 0.00 5.36
2445 5905 2.504681 CGTCATGCAAAAGCGGGC 60.505 61.111 0.00 0.00 0.00 6.13
2446 5906 2.650196 GTCATGCAAAAGCGGGCA 59.350 55.556 0.00 0.00 45.23 5.36
2449 5909 0.390078 TCATGCAAAAGCGGGCAATG 60.390 50.000 0.00 0.00 44.20 2.82
2450 5910 0.671163 CATGCAAAAGCGGGCAATGT 60.671 50.000 0.00 0.00 44.20 2.71
2454 5914 1.580815 CAAAAGCGGGCAATGTTGTT 58.419 45.000 0.00 0.00 0.00 2.83
2456 5916 3.126831 CAAAAGCGGGCAATGTTGTTAA 58.873 40.909 0.00 0.00 0.00 2.01
2492 5953 8.024285 CCGAGTACATTTTATGCCAAAGTTTTA 58.976 33.333 0.00 0.00 0.00 1.52
2501 5963 8.794335 TTTATGCCAAAGTTTTAAAAAGTGGT 57.206 26.923 19.36 9.29 0.00 4.16
2512 5974 7.979537 AGTTTTAAAAAGTGGTCAGATTTGTCC 59.020 33.333 1.31 0.00 33.69 4.02
2513 5975 4.568152 AAAAAGTGGTCAGATTTGTCCG 57.432 40.909 0.00 0.00 35.56 4.79
2517 5979 3.551846 AGTGGTCAGATTTGTCCGTTTT 58.448 40.909 0.00 0.00 35.56 2.43
2531 5993 4.639310 TGTCCGTTTTACTAAAACCTGCAA 59.361 37.500 15.70 0.32 46.12 4.08
2561 6027 3.243704 GCAAAGCCACTTATGAACCAACA 60.244 43.478 0.00 0.00 0.00 3.33
2567 6033 2.548057 CACTTATGAACCAACAGCACGT 59.452 45.455 0.00 0.00 0.00 4.49
2613 6079 0.874390 CACACACGATCACCCCAAAG 59.126 55.000 0.00 0.00 0.00 2.77
2683 6149 1.609208 TGAAGCAAGGCAGAAACTCC 58.391 50.000 0.00 0.00 0.00 3.85
2815 6821 6.832520 TTCTGCAATATGCTCCAAGTTTTA 57.167 33.333 3.78 0.00 45.31 1.52
2822 6828 9.801873 GCAATATGCTCCAAGTTTTAAGATTAA 57.198 29.630 0.00 0.00 40.96 1.40
2922 6929 5.222254 TGCCCTATTTTTAGTCTTCCAGGTT 60.222 40.000 0.00 0.00 0.00 3.50
2929 6936 1.671379 GTCTTCCAGGTTGTCCGGC 60.671 63.158 0.00 0.00 39.05 6.13
2938 6945 0.386731 GGTTGTCCGGCAAATTGTCG 60.387 55.000 13.54 13.54 46.34 4.35
2984 6991 0.773644 AGGAGTGCAACCATTGTCCT 59.226 50.000 12.69 2.53 37.80 3.85
3004 7043 0.947244 GGCATTTAGACAGGCCATCG 59.053 55.000 5.01 0.00 45.70 3.84
3005 7044 0.947244 GCATTTAGACAGGCCATCGG 59.053 55.000 5.01 0.00 0.00 4.18
3019 7058 0.446222 CATCGGCATTTTCGACCGTT 59.554 50.000 10.72 0.78 46.92 4.44
3035 7074 5.048504 TCGACCGTTAGATCTACACTTTTGT 60.049 40.000 0.67 0.00 40.02 2.83
3049 7088 2.286872 CTTTTGTGCATTTTGTGGCCA 58.713 42.857 0.00 0.00 0.00 5.36
3065 7104 2.093288 TGGCCATTTGTTGTGCTTTCAA 60.093 40.909 0.00 0.00 0.00 2.69
3070 7109 4.687483 CCATTTGTTGTGCTTTCAATCCTC 59.313 41.667 0.00 0.00 0.00 3.71
3072 7111 2.942804 TGTTGTGCTTTCAATCCTCCA 58.057 42.857 0.00 0.00 0.00 3.86
3075 7114 2.449464 TGTGCTTTCAATCCTCCATGG 58.551 47.619 4.97 4.97 37.10 3.66
3088 7127 3.723681 TCCTCCATGGGCTTCAATATCTT 59.276 43.478 13.02 0.00 36.20 2.40
3097 7136 5.193728 TGGGCTTCAATATCTTTTACTCCCT 59.806 40.000 0.00 0.00 0.00 4.20
3098 7137 6.129874 GGGCTTCAATATCTTTTACTCCCTT 58.870 40.000 0.00 0.00 0.00 3.95
3101 7140 6.539103 GCTTCAATATCTTTTACTCCCTTCGT 59.461 38.462 0.00 0.00 0.00 3.85
3102 7141 7.065923 GCTTCAATATCTTTTACTCCCTTCGTT 59.934 37.037 0.00 0.00 0.00 3.85
3104 7143 7.046033 TCAATATCTTTTACTCCCTTCGTTCC 58.954 38.462 0.00 0.00 0.00 3.62
3107 7146 6.616237 ATCTTTTACTCCCTTCGTTCCTAA 57.384 37.500 0.00 0.00 0.00 2.69
3116 7155 8.087303 ACTCCCTTCGTTCCTAAATATAAGTT 57.913 34.615 0.00 0.00 0.00 2.66
3258 7297 7.979786 TTAGGAACAGAGGAAATATGTCTCT 57.020 36.000 0.00 0.00 38.29 3.10
3259 7298 6.882768 AGGAACAGAGGAAATATGTCTCTT 57.117 37.500 0.00 0.00 35.89 2.85
3260 7299 6.883744 AGGAACAGAGGAAATATGTCTCTTC 58.116 40.000 0.00 0.00 35.89 2.87
3261 7300 6.671779 AGGAACAGAGGAAATATGTCTCTTCT 59.328 38.462 0.00 0.00 35.89 2.85
3262 7301 6.983890 GGAACAGAGGAAATATGTCTCTTCTC 59.016 42.308 0.00 0.00 35.89 2.87
3263 7302 6.478512 ACAGAGGAAATATGTCTCTTCTCC 57.521 41.667 0.00 0.00 35.89 3.71
3264 7303 5.365314 ACAGAGGAAATATGTCTCTTCTCCC 59.635 44.000 0.00 0.00 35.89 4.30
3265 7304 5.602145 CAGAGGAAATATGTCTCTTCTCCCT 59.398 44.000 0.00 0.00 35.89 4.20
3266 7305 6.780031 CAGAGGAAATATGTCTCTTCTCCCTA 59.220 42.308 0.00 0.00 35.89 3.53
3267 7306 6.780522 AGAGGAAATATGTCTCTTCTCCCTAC 59.219 42.308 0.00 0.00 34.55 3.18
3268 7307 6.444704 AGGAAATATGTCTCTTCTCCCTACA 58.555 40.000 0.00 0.00 0.00 2.74
3269 7308 6.325286 AGGAAATATGTCTCTTCTCCCTACAC 59.675 42.308 0.00 0.00 0.00 2.90
3270 7309 6.463190 GGAAATATGTCTCTTCTCCCTACACC 60.463 46.154 0.00 0.00 0.00 4.16
3271 7310 2.992847 TGTCTCTTCTCCCTACACCA 57.007 50.000 0.00 0.00 0.00 4.17
3272 7311 2.526432 TGTCTCTTCTCCCTACACCAC 58.474 52.381 0.00 0.00 0.00 4.16
3273 7312 2.158370 TGTCTCTTCTCCCTACACCACA 60.158 50.000 0.00 0.00 0.00 4.17
3274 7313 2.231721 GTCTCTTCTCCCTACACCACAC 59.768 54.545 0.00 0.00 0.00 3.82
3275 7314 1.202582 CTCTTCTCCCTACACCACACG 59.797 57.143 0.00 0.00 0.00 4.49
3276 7315 0.966920 CTTCTCCCTACACCACACGT 59.033 55.000 0.00 0.00 0.00 4.49
3277 7316 1.343465 CTTCTCCCTACACCACACGTT 59.657 52.381 0.00 0.00 0.00 3.99
3278 7317 0.677288 TCTCCCTACACCACACGTTG 59.323 55.000 0.00 0.00 0.00 4.10
3279 7318 0.949105 CTCCCTACACCACACGTTGC 60.949 60.000 0.00 0.00 0.00 4.17
3280 7319 1.227704 CCCTACACCACACGTTGCA 60.228 57.895 0.00 0.00 0.00 4.08
3281 7320 0.605319 CCCTACACCACACGTTGCAT 60.605 55.000 0.00 0.00 0.00 3.96
3282 7321 1.234821 CCTACACCACACGTTGCATT 58.765 50.000 0.00 0.00 0.00 3.56
3283 7322 1.196808 CCTACACCACACGTTGCATTC 59.803 52.381 0.00 0.00 0.00 2.67
3284 7323 0.862490 TACACCACACGTTGCATTCG 59.138 50.000 9.66 9.66 0.00 3.34
3285 7324 1.092921 ACACCACACGTTGCATTCGT 61.093 50.000 10.83 10.83 42.33 3.85
3286 7325 0.384230 CACCACACGTTGCATTCGTC 60.384 55.000 13.16 0.00 39.55 4.20
3287 7326 1.154672 CCACACGTTGCATTCGTCG 60.155 57.895 13.16 11.47 39.55 5.12
3288 7327 1.788203 CACACGTTGCATTCGTCGC 60.788 57.895 13.16 0.00 39.55 5.19
3289 7328 1.954146 ACACGTTGCATTCGTCGCT 60.954 52.632 13.16 0.00 39.55 4.93
3290 7329 1.225475 CACGTTGCATTCGTCGCTC 60.225 57.895 13.16 0.00 39.55 5.03
3291 7330 1.663388 ACGTTGCATTCGTCGCTCA 60.663 52.632 10.83 0.00 36.85 4.26
3292 7331 1.014044 ACGTTGCATTCGTCGCTCAT 61.014 50.000 10.83 0.00 36.85 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.549364 ACCAGGTTTGAATGATGAACAGTAAA 59.451 34.615 0.00 0.00 0.00 2.01
1 2 6.068010 ACCAGGTTTGAATGATGAACAGTAA 58.932 36.000 0.00 0.00 0.00 2.24
2 3 5.630121 ACCAGGTTTGAATGATGAACAGTA 58.370 37.500 0.00 0.00 0.00 2.74
3 4 4.473444 ACCAGGTTTGAATGATGAACAGT 58.527 39.130 0.00 0.00 0.00 3.55
4 5 4.520111 TGACCAGGTTTGAATGATGAACAG 59.480 41.667 0.00 0.00 0.00 3.16
5 6 4.468713 TGACCAGGTTTGAATGATGAACA 58.531 39.130 0.00 0.00 0.00 3.18
6 7 5.221224 TGTTGACCAGGTTTGAATGATGAAC 60.221 40.000 0.00 0.00 0.00 3.18
7 8 4.892345 TGTTGACCAGGTTTGAATGATGAA 59.108 37.500 0.00 0.00 0.00 2.57
8 9 4.468713 TGTTGACCAGGTTTGAATGATGA 58.531 39.130 0.00 0.00 0.00 2.92
9 10 4.852134 TGTTGACCAGGTTTGAATGATG 57.148 40.909 0.00 0.00 0.00 3.07
10 11 4.221262 CCATGTTGACCAGGTTTGAATGAT 59.779 41.667 0.00 0.00 0.00 2.45
11 12 3.573538 CCATGTTGACCAGGTTTGAATGA 59.426 43.478 0.00 0.00 0.00 2.57
12 13 3.321682 ACCATGTTGACCAGGTTTGAATG 59.678 43.478 0.00 0.00 0.00 2.67
13 14 3.573967 GACCATGTTGACCAGGTTTGAAT 59.426 43.478 0.00 0.00 33.77 2.57
14 15 2.955660 GACCATGTTGACCAGGTTTGAA 59.044 45.455 0.00 0.00 33.77 2.69
15 16 2.092158 TGACCATGTTGACCAGGTTTGA 60.092 45.455 0.00 0.00 33.77 2.69
16 17 2.305928 TGACCATGTTGACCAGGTTTG 58.694 47.619 0.00 0.00 33.77 2.93
17 18 2.746279 TGACCATGTTGACCAGGTTT 57.254 45.000 0.00 0.00 33.77 3.27
18 19 2.693074 GTTTGACCATGTTGACCAGGTT 59.307 45.455 0.00 0.00 33.77 3.50
19 20 2.306847 GTTTGACCATGTTGACCAGGT 58.693 47.619 0.00 0.00 37.00 4.00
20 21 1.613437 GGTTTGACCATGTTGACCAGG 59.387 52.381 0.00 0.00 38.42 4.45
21 22 2.294233 CAGGTTTGACCATGTTGACCAG 59.706 50.000 0.00 0.00 41.95 4.00
22 23 2.305928 CAGGTTTGACCATGTTGACCA 58.694 47.619 0.00 0.00 41.95 4.02
23 24 1.613437 CCAGGTTTGACCATGTTGACC 59.387 52.381 0.00 0.00 41.95 4.02
24 25 2.293399 GACCAGGTTTGACCATGTTGAC 59.707 50.000 0.00 0.00 41.95 3.18
25 26 2.092158 TGACCAGGTTTGACCATGTTGA 60.092 45.455 0.00 0.00 41.95 3.18
26 27 2.305928 TGACCAGGTTTGACCATGTTG 58.694 47.619 0.00 0.00 41.95 3.33
27 28 2.693074 GTTGACCAGGTTTGACCATGTT 59.307 45.455 0.00 0.00 41.95 2.71
28 29 2.091885 AGTTGACCAGGTTTGACCATGT 60.092 45.455 0.00 0.00 41.95 3.21
29 30 2.586425 AGTTGACCAGGTTTGACCATG 58.414 47.619 0.00 0.00 41.95 3.66
30 31 2.958355 CAAGTTGACCAGGTTTGACCAT 59.042 45.455 0.00 0.00 41.95 3.55
31 32 2.374184 CAAGTTGACCAGGTTTGACCA 58.626 47.619 0.00 0.00 41.95 4.02
32 33 1.067060 GCAAGTTGACCAGGTTTGACC 59.933 52.381 7.16 0.00 38.99 4.02
33 34 2.024414 AGCAAGTTGACCAGGTTTGAC 58.976 47.619 7.16 0.21 0.00 3.18
34 35 2.435372 AGCAAGTTGACCAGGTTTGA 57.565 45.000 7.16 0.00 0.00 2.69
35 36 4.647424 TTAAGCAAGTTGACCAGGTTTG 57.353 40.909 7.16 0.00 0.00 2.93
36 37 5.669164 TTTTAAGCAAGTTGACCAGGTTT 57.331 34.783 7.16 0.00 0.00 3.27
37 38 5.869649 ATTTTAAGCAAGTTGACCAGGTT 57.130 34.783 7.16 0.00 0.00 3.50
38 39 6.071391 CCATATTTTAAGCAAGTTGACCAGGT 60.071 38.462 7.16 0.00 0.00 4.00
39 40 6.071391 ACCATATTTTAAGCAAGTTGACCAGG 60.071 38.462 7.16 0.00 0.00 4.45
40 41 6.924111 ACCATATTTTAAGCAAGTTGACCAG 58.076 36.000 7.16 0.00 0.00 4.00
41 42 6.909550 ACCATATTTTAAGCAAGTTGACCA 57.090 33.333 7.16 0.00 0.00 4.02
42 43 8.495148 CAAAACCATATTTTAAGCAAGTTGACC 58.505 33.333 7.16 0.00 0.00 4.02
43 44 9.255304 TCAAAACCATATTTTAAGCAAGTTGAC 57.745 29.630 7.16 0.00 0.00 3.18
44 45 9.823647 TTCAAAACCATATTTTAAGCAAGTTGA 57.176 25.926 7.16 0.00 0.00 3.18
45 46 9.862585 GTTCAAAACCATATTTTAAGCAAGTTG 57.137 29.630 0.00 0.00 0.00 3.16
71 72 6.884280 AGTCTCAAAACCAGATAAGTTTGG 57.116 37.500 0.00 0.00 37.50 3.28
72 73 7.930217 TCAAGTCTCAAAACCAGATAAGTTTG 58.070 34.615 0.00 0.00 37.50 2.93
73 74 8.519799 TTCAAGTCTCAAAACCAGATAAGTTT 57.480 30.769 0.00 0.00 39.07 2.66
74 75 7.229506 CCTTCAAGTCTCAAAACCAGATAAGTT 59.770 37.037 0.00 0.00 0.00 2.66
75 76 6.712547 CCTTCAAGTCTCAAAACCAGATAAGT 59.287 38.462 0.00 0.00 0.00 2.24
76 77 6.936900 TCCTTCAAGTCTCAAAACCAGATAAG 59.063 38.462 0.00 0.00 0.00 1.73
77 78 6.710744 GTCCTTCAAGTCTCAAAACCAGATAA 59.289 38.462 0.00 0.00 0.00 1.75
78 79 6.231211 GTCCTTCAAGTCTCAAAACCAGATA 58.769 40.000 0.00 0.00 0.00 1.98
79 80 5.066593 GTCCTTCAAGTCTCAAAACCAGAT 58.933 41.667 0.00 0.00 0.00 2.90
80 81 4.451900 GTCCTTCAAGTCTCAAAACCAGA 58.548 43.478 0.00 0.00 0.00 3.86
81 82 3.565902 GGTCCTTCAAGTCTCAAAACCAG 59.434 47.826 0.00 0.00 0.00 4.00
82 83 3.053991 TGGTCCTTCAAGTCTCAAAACCA 60.054 43.478 0.00 0.00 32.13 3.67
83 84 3.551846 TGGTCCTTCAAGTCTCAAAACC 58.448 45.455 0.00 0.00 0.00 3.27
84 85 5.576447 TTTGGTCCTTCAAGTCTCAAAAC 57.424 39.130 0.00 0.00 0.00 2.43
85 86 5.656416 ACATTTGGTCCTTCAAGTCTCAAAA 59.344 36.000 0.00 0.00 0.00 2.44
86 87 5.200483 ACATTTGGTCCTTCAAGTCTCAAA 58.800 37.500 0.00 0.00 0.00 2.69
87 88 4.792068 ACATTTGGTCCTTCAAGTCTCAA 58.208 39.130 0.00 0.00 0.00 3.02
88 89 4.437682 ACATTTGGTCCTTCAAGTCTCA 57.562 40.909 0.00 0.00 0.00 3.27
89 90 6.539103 GGTATACATTTGGTCCTTCAAGTCTC 59.461 42.308 5.01 0.00 0.00 3.36
90 91 6.012858 TGGTATACATTTGGTCCTTCAAGTCT 60.013 38.462 5.01 0.00 0.00 3.24
91 92 6.177610 TGGTATACATTTGGTCCTTCAAGTC 58.822 40.000 5.01 0.00 0.00 3.01
92 93 6.134535 TGGTATACATTTGGTCCTTCAAGT 57.865 37.500 5.01 0.00 0.00 3.16
93 94 7.461182 TTTGGTATACATTTGGTCCTTCAAG 57.539 36.000 5.01 0.00 0.00 3.02
94 95 7.841282 TTTTGGTATACATTTGGTCCTTCAA 57.159 32.000 5.01 0.00 0.00 2.69
95 96 7.841282 TTTTTGGTATACATTTGGTCCTTCA 57.159 32.000 5.01 0.00 0.00 3.02
121 122 9.273016 CAAAAGTATAGACTTGGTCTTTCAAGA 57.727 33.333 2.98 0.00 45.50 3.02
122 123 8.507249 CCAAAAGTATAGACTTGGTCTTTCAAG 58.493 37.037 2.98 3.39 45.50 3.02
123 124 7.447238 CCCAAAAGTATAGACTTGGTCTTTCAA 59.553 37.037 2.98 0.00 45.50 2.69
124 125 6.940298 CCCAAAAGTATAGACTTGGTCTTTCA 59.060 38.462 2.98 0.00 45.50 2.69
125 126 6.374613 CCCCAAAAGTATAGACTTGGTCTTTC 59.625 42.308 2.98 0.00 45.50 2.62
126 127 6.045106 TCCCCAAAAGTATAGACTTGGTCTTT 59.955 38.462 2.98 1.20 45.50 2.52
127 128 5.550403 TCCCCAAAAGTATAGACTTGGTCTT 59.450 40.000 2.98 0.00 45.50 3.01
128 129 5.098663 TCCCCAAAAGTATAGACTTGGTCT 58.901 41.667 2.98 5.52 45.50 3.85
129 130 5.431179 TCCCCAAAAGTATAGACTTGGTC 57.569 43.478 2.98 0.00 45.50 4.02
130 131 5.312443 AGTTCCCCAAAAGTATAGACTTGGT 59.688 40.000 2.98 0.00 45.50 3.67
131 132 5.816682 AGTTCCCCAAAAGTATAGACTTGG 58.183 41.667 2.98 2.32 45.50 3.61
132 133 6.940298 TCAAGTTCCCCAAAAGTATAGACTTG 59.060 38.462 2.98 0.00 45.50 3.16
134 135 6.296489 CCTCAAGTTCCCCAAAAGTATAGACT 60.296 42.308 0.00 0.00 37.59 3.24
135 136 5.880887 CCTCAAGTTCCCCAAAAGTATAGAC 59.119 44.000 0.00 0.00 0.00 2.59
136 137 5.045140 CCCTCAAGTTCCCCAAAAGTATAGA 60.045 44.000 0.00 0.00 0.00 1.98
137 138 5.045140 TCCCTCAAGTTCCCCAAAAGTATAG 60.045 44.000 0.00 0.00 0.00 1.31
138 139 4.853276 TCCCTCAAGTTCCCCAAAAGTATA 59.147 41.667 0.00 0.00 0.00 1.47
139 140 3.660669 TCCCTCAAGTTCCCCAAAAGTAT 59.339 43.478 0.00 0.00 0.00 2.12
140 141 3.057586 TCCCTCAAGTTCCCCAAAAGTA 58.942 45.455 0.00 0.00 0.00 2.24
141 142 1.856920 TCCCTCAAGTTCCCCAAAAGT 59.143 47.619 0.00 0.00 0.00 2.66
142 143 2.239400 GTCCCTCAAGTTCCCCAAAAG 58.761 52.381 0.00 0.00 0.00 2.27
143 144 1.133294 GGTCCCTCAAGTTCCCCAAAA 60.133 52.381 0.00 0.00 0.00 2.44
144 145 0.481128 GGTCCCTCAAGTTCCCCAAA 59.519 55.000 0.00 0.00 0.00 3.28
145 146 0.699577 TGGTCCCTCAAGTTCCCCAA 60.700 55.000 0.00 0.00 0.00 4.12
146 147 0.699577 TTGGTCCCTCAAGTTCCCCA 60.700 55.000 0.00 0.00 0.00 4.96
147 148 0.481128 TTTGGTCCCTCAAGTTCCCC 59.519 55.000 0.00 0.00 0.00 4.81
148 149 2.364324 GTTTTTGGTCCCTCAAGTTCCC 59.636 50.000 0.00 0.00 0.00 3.97
149 150 3.028130 TGTTTTTGGTCCCTCAAGTTCC 58.972 45.455 0.00 0.00 0.00 3.62
150 151 4.937201 ATGTTTTTGGTCCCTCAAGTTC 57.063 40.909 0.00 0.00 0.00 3.01
151 152 5.454966 AGTATGTTTTTGGTCCCTCAAGTT 58.545 37.500 0.00 0.00 0.00 2.66
152 153 5.061721 AGTATGTTTTTGGTCCCTCAAGT 57.938 39.130 0.00 0.00 0.00 3.16
153 154 6.405278 AAAGTATGTTTTTGGTCCCTCAAG 57.595 37.500 0.00 0.00 0.00 3.02
154 155 6.609616 AGAAAAGTATGTTTTTGGTCCCTCAA 59.390 34.615 0.00 0.00 0.00 3.02
155 156 6.133356 AGAAAAGTATGTTTTTGGTCCCTCA 58.867 36.000 0.00 0.00 0.00 3.86
156 157 6.264518 TGAGAAAAGTATGTTTTTGGTCCCTC 59.735 38.462 0.00 0.00 0.00 4.30
157 158 6.133356 TGAGAAAAGTATGTTTTTGGTCCCT 58.867 36.000 0.00 0.00 0.00 4.20
158 159 6.399639 TGAGAAAAGTATGTTTTTGGTCCC 57.600 37.500 0.00 0.00 0.00 4.46
256 257 6.544197 CAGGACTACTGTAGTGTCTATGACAT 59.456 42.308 24.15 3.10 42.26 3.06
257 258 5.880887 CAGGACTACTGTAGTGTCTATGACA 59.119 44.000 24.15 0.00 42.42 3.58
459 623 5.860182 CCTGTGCTCTTAAACATTGTTGATG 59.140 40.000 2.13 0.00 41.71 3.07
513 677 4.321230 GGTCGGCAACTCAATTTTGATCTT 60.321 41.667 0.00 0.00 36.46 2.40
524 688 2.639970 CCAAATGGTCGGCAACTCA 58.360 52.632 0.00 0.00 0.00 3.41
537 701 8.639761 ACTCTATACGACTATAGTTTGCCAAAT 58.360 33.333 6.88 0.00 35.27 2.32
567 731 2.358615 GCATCCACACAGGCGTGA 60.359 61.111 14.38 0.00 46.80 4.35
572 736 1.210234 TCCTACATGCATCCACACAGG 59.790 52.381 0.00 0.00 39.47 4.00
621 1554 6.216569 TCCATATTGAGAGAATTACACTCGC 58.783 40.000 0.00 0.00 38.68 5.03
734 1693 4.130857 TGCCAGTTCGTTCATTACTTTGA 58.869 39.130 0.00 0.00 0.00 2.69
742 1701 1.200716 CTGCAATGCCAGTTCGTTCAT 59.799 47.619 1.53 0.00 0.00 2.57
759 2082 2.363683 CCTGGTTCATTCCTTCTCTGC 58.636 52.381 0.00 0.00 0.00 4.26
921 4264 3.186047 CGGCGGATTCGGTGTGTC 61.186 66.667 0.00 0.00 36.79 3.67
1150 4592 1.081041 CACGGACGACATGGACGAA 60.081 57.895 18.41 0.00 34.70 3.85
1643 5094 2.383527 CCACGTGCTTCTTCTCGGC 61.384 63.158 10.91 0.00 0.00 5.54
1954 5408 0.179163 CGAGCATGTACAGCGACTCA 60.179 55.000 0.33 0.00 37.01 3.41
2034 5488 3.938963 GAGAGAGTGAGAGACAGACGATT 59.061 47.826 0.00 0.00 0.00 3.34
2049 5503 1.158434 GTGTTCGACCGAGAGAGAGT 58.842 55.000 0.00 0.00 0.00 3.24
2072 5526 3.887110 CGGAGGGAGTGTGTATGTATGTA 59.113 47.826 0.00 0.00 0.00 2.29
2073 5527 2.693591 CGGAGGGAGTGTGTATGTATGT 59.306 50.000 0.00 0.00 0.00 2.29
2074 5528 2.693591 ACGGAGGGAGTGTGTATGTATG 59.306 50.000 0.00 0.00 0.00 2.39
2075 5529 2.957006 GACGGAGGGAGTGTGTATGTAT 59.043 50.000 0.00 0.00 0.00 2.29
2076 5530 2.372264 GACGGAGGGAGTGTGTATGTA 58.628 52.381 0.00 0.00 0.00 2.29
2077 5531 1.183549 GACGGAGGGAGTGTGTATGT 58.816 55.000 0.00 0.00 0.00 2.29
2078 5532 0.460311 GGACGGAGGGAGTGTGTATG 59.540 60.000 0.00 0.00 0.00 2.39
2079 5533 0.040646 TGGACGGAGGGAGTGTGTAT 59.959 55.000 0.00 0.00 0.00 2.29
2080 5534 0.040646 ATGGACGGAGGGAGTGTGTA 59.959 55.000 0.00 0.00 0.00 2.90
2081 5535 0.040646 TATGGACGGAGGGAGTGTGT 59.959 55.000 0.00 0.00 0.00 3.72
2082 5536 1.191535 TTATGGACGGAGGGAGTGTG 58.808 55.000 0.00 0.00 0.00 3.82
2083 5537 2.176247 ATTATGGACGGAGGGAGTGT 57.824 50.000 0.00 0.00 0.00 3.55
2084 5538 5.715279 TCTTATATTATGGACGGAGGGAGTG 59.285 44.000 0.00 0.00 0.00 3.51
2085 5539 5.900437 TCTTATATTATGGACGGAGGGAGT 58.100 41.667 0.00 0.00 0.00 3.85
2086 5540 5.952947 ACTCTTATATTATGGACGGAGGGAG 59.047 44.000 0.00 0.00 0.00 4.30
2087 5541 5.900437 ACTCTTATATTATGGACGGAGGGA 58.100 41.667 0.00 0.00 0.00 4.20
2088 5542 7.713734 TTACTCTTATATTATGGACGGAGGG 57.286 40.000 0.00 0.00 0.00 4.30
2089 5543 9.991906 TTTTTACTCTTATATTATGGACGGAGG 57.008 33.333 0.00 0.00 0.00 4.30
2112 5566 7.924412 TCCGTCTCATAATATAAGAGCGTTTTT 59.076 33.333 0.00 0.00 31.69 1.94
2113 5567 7.431249 TCCGTCTCATAATATAAGAGCGTTTT 58.569 34.615 0.00 0.00 31.69 2.43
2114 5568 6.978338 TCCGTCTCATAATATAAGAGCGTTT 58.022 36.000 0.00 0.00 31.69 3.60
2115 5569 6.349445 CCTCCGTCTCATAATATAAGAGCGTT 60.349 42.308 0.00 0.00 31.69 4.84
2116 5570 5.124138 CCTCCGTCTCATAATATAAGAGCGT 59.876 44.000 0.00 0.00 31.69 5.07
2117 5571 5.449314 CCCTCCGTCTCATAATATAAGAGCG 60.449 48.000 0.00 0.00 0.00 5.03
2118 5572 5.163499 CCCCTCCGTCTCATAATATAAGAGC 60.163 48.000 0.00 0.00 0.00 4.09
2119 5573 5.952947 ACCCCTCCGTCTCATAATATAAGAG 59.047 44.000 0.00 0.00 0.00 2.85
2120 5574 5.900437 ACCCCTCCGTCTCATAATATAAGA 58.100 41.667 0.00 0.00 0.00 2.10
2121 5575 7.117397 TCTACCCCTCCGTCTCATAATATAAG 58.883 42.308 0.00 0.00 0.00 1.73
2122 5576 7.036154 TCTACCCCTCCGTCTCATAATATAA 57.964 40.000 0.00 0.00 0.00 0.98
2123 5577 6.647461 TCTACCCCTCCGTCTCATAATATA 57.353 41.667 0.00 0.00 0.00 0.86
2124 5578 5.531753 TCTACCCCTCCGTCTCATAATAT 57.468 43.478 0.00 0.00 0.00 1.28
2125 5579 5.531753 ATCTACCCCTCCGTCTCATAATA 57.468 43.478 0.00 0.00 0.00 0.98
2126 5580 3.897657 TCTACCCCTCCGTCTCATAAT 57.102 47.619 0.00 0.00 0.00 1.28
2127 5581 3.897657 ATCTACCCCTCCGTCTCATAA 57.102 47.619 0.00 0.00 0.00 1.90
2128 5582 3.654321 TGTATCTACCCCTCCGTCTCATA 59.346 47.826 0.00 0.00 0.00 2.15
2129 5583 2.445905 TGTATCTACCCCTCCGTCTCAT 59.554 50.000 0.00 0.00 0.00 2.90
2130 5584 1.848388 TGTATCTACCCCTCCGTCTCA 59.152 52.381 0.00 0.00 0.00 3.27
2131 5585 2.653234 TGTATCTACCCCTCCGTCTC 57.347 55.000 0.00 0.00 0.00 3.36
2132 5586 3.393426 TTTGTATCTACCCCTCCGTCT 57.607 47.619 0.00 0.00 0.00 4.18
2133 5587 3.196254 TGTTTTGTATCTACCCCTCCGTC 59.804 47.826 0.00 0.00 0.00 4.79
2134 5588 3.175594 TGTTTTGTATCTACCCCTCCGT 58.824 45.455 0.00 0.00 0.00 4.69
2135 5589 3.793559 CTGTTTTGTATCTACCCCTCCG 58.206 50.000 0.00 0.00 0.00 4.63
2136 5590 3.054655 TGCTGTTTTGTATCTACCCCTCC 60.055 47.826 0.00 0.00 0.00 4.30
2137 5591 3.939592 GTGCTGTTTTGTATCTACCCCTC 59.060 47.826 0.00 0.00 0.00 4.30
2138 5592 3.618997 CGTGCTGTTTTGTATCTACCCCT 60.619 47.826 0.00 0.00 0.00 4.79
2139 5593 2.676342 CGTGCTGTTTTGTATCTACCCC 59.324 50.000 0.00 0.00 0.00 4.95
2140 5594 2.095372 GCGTGCTGTTTTGTATCTACCC 59.905 50.000 0.00 0.00 0.00 3.69
2141 5595 3.000727 AGCGTGCTGTTTTGTATCTACC 58.999 45.455 0.00 0.00 0.00 3.18
2142 5596 4.151689 TCAAGCGTGCTGTTTTGTATCTAC 59.848 41.667 0.00 0.00 0.00 2.59
2162 5616 1.128507 CGTTAGCGCTCAAGCATTCAA 59.871 47.619 16.34 0.00 42.21 2.69
2173 5627 1.038130 AGGAGATGGTCGTTAGCGCT 61.038 55.000 17.26 17.26 38.14 5.92
2174 5628 0.179108 AAGGAGATGGTCGTTAGCGC 60.179 55.000 0.00 0.00 38.14 5.92
2203 5658 2.945668 GTTGATATGGAGGCTCGCTTTT 59.054 45.455 8.69 0.00 0.00 2.27
2207 5662 2.246719 AAGTTGATATGGAGGCTCGC 57.753 50.000 8.69 2.15 0.00 5.03
2217 5674 9.807649 GCCAATCTTGTTAATGAAAGTTGATAT 57.192 29.630 0.00 0.00 0.00 1.63
2222 5679 6.815089 TGTGCCAATCTTGTTAATGAAAGTT 58.185 32.000 0.00 0.00 0.00 2.66
2224 5681 7.894376 ATTGTGCCAATCTTGTTAATGAAAG 57.106 32.000 0.00 0.00 0.00 2.62
2234 5691 7.244166 TGTTTTGTAAATTGTGCCAATCTTG 57.756 32.000 1.57 0.00 0.00 3.02
2235 5692 7.856145 TTGTTTTGTAAATTGTGCCAATCTT 57.144 28.000 1.57 2.53 0.00 2.40
2237 5694 8.793472 GTTTTTGTTTTGTAAATTGTGCCAATC 58.207 29.630 1.57 0.00 0.00 2.67
2239 5696 7.648142 TGTTTTTGTTTTGTAAATTGTGCCAA 58.352 26.923 0.00 0.00 0.00 4.52
2278 5736 8.762645 TGTATTCCTCATATTTGTGAGACTTCT 58.237 33.333 5.95 0.00 46.77 2.85
2289 5747 8.026607 CACGTTTTGGTTGTATTCCTCATATTT 58.973 33.333 0.00 0.00 0.00 1.40
2290 5748 7.362574 CCACGTTTTGGTTGTATTCCTCATATT 60.363 37.037 0.00 0.00 41.10 1.28
2307 5765 1.555477 GCCACTTTCACCACGTTTTG 58.445 50.000 0.00 0.00 0.00 2.44
2313 5771 1.963515 AGATTTGGCCACTTTCACCAC 59.036 47.619 3.88 0.00 31.83 4.16
2343 5801 6.424812 GGCTTCATTTTGTGCTAAAGTTTCAT 59.575 34.615 0.00 0.00 0.00 2.57
2345 5803 5.107875 CGGCTTCATTTTGTGCTAAAGTTTC 60.108 40.000 0.00 0.00 0.00 2.78
2353 5811 1.474077 GGATCGGCTTCATTTTGTGCT 59.526 47.619 0.00 0.00 0.00 4.40
2357 5815 4.305769 TGTTTTGGATCGGCTTCATTTTG 58.694 39.130 0.00 0.00 0.00 2.44
2366 5824 2.029470 TGTGGAATTGTTTTGGATCGGC 60.029 45.455 0.00 0.00 0.00 5.54
2440 5900 4.740741 AAAAATTAACAACATTGCCCGC 57.259 36.364 0.00 0.00 0.00 6.13
2466 5927 5.560966 ACTTTGGCATAAAATGTACTCGG 57.439 39.130 0.00 0.00 0.00 4.63
2467 5928 7.867445 AAAACTTTGGCATAAAATGTACTCG 57.133 32.000 0.00 0.00 0.00 4.18
2492 5953 3.951680 ACGGACAAATCTGACCACTTTTT 59.048 39.130 0.00 0.00 37.24 1.94
2497 5958 3.982576 AAAACGGACAAATCTGACCAC 57.017 42.857 0.00 0.00 37.24 4.16
2498 5959 4.710324 AGTAAAACGGACAAATCTGACCA 58.290 39.130 0.00 0.00 37.24 4.02
2517 5979 5.770663 TGCCTAATTGTTGCAGGTTTTAGTA 59.229 36.000 0.00 0.00 0.00 1.82
2555 6021 1.301716 CTGCCTACGTGCTGTTGGT 60.302 57.895 0.00 0.00 44.30 3.67
2561 6027 1.002087 AGTTTTAGCTGCCTACGTGCT 59.998 47.619 0.00 0.00 40.43 4.40
2600 6066 2.030274 GGTTTGAACTTTGGGGTGATCG 60.030 50.000 0.00 0.00 0.00 3.69
2613 6079 7.222031 GGAACTTGTTTAGTTGATGGTTTGAAC 59.778 37.037 0.00 0.00 47.00 3.18
2683 6149 3.128242 GCCAGGAGAATTTGTCACTCATG 59.872 47.826 0.00 0.00 40.54 3.07
2757 6763 5.363580 AGAAGAGAAACTGAGGATGGAGATC 59.636 44.000 0.00 0.00 0.00 2.75
2850 6856 8.454106 CGATGATCAGGTCTCTTTTGTTTTAAT 58.546 33.333 0.09 0.00 0.00 1.40
2851 6857 7.094805 CCGATGATCAGGTCTCTTTTGTTTTAA 60.095 37.037 0.09 0.00 0.00 1.52
2857 6863 4.128925 TCCGATGATCAGGTCTCTTTTG 57.871 45.455 0.09 0.00 0.00 2.44
2896 6903 5.300286 CCTGGAAGACTAAAAATAGGGCATG 59.700 44.000 0.00 0.00 34.07 4.06
2922 6929 0.320858 TAGCGACAATTTGCCGGACA 60.321 50.000 5.05 0.00 31.49 4.02
2929 6936 1.379527 GAGGGGGTAGCGACAATTTG 58.620 55.000 0.00 0.00 0.00 2.32
3004 7043 3.195661 AGATCTAACGGTCGAAAATGCC 58.804 45.455 0.00 0.00 0.00 4.40
3005 7044 4.802039 TGTAGATCTAACGGTCGAAAATGC 59.198 41.667 3.40 0.00 0.00 3.56
3013 7052 5.163982 GCACAAAAGTGTAGATCTAACGGTC 60.164 44.000 3.40 0.00 35.72 4.79
3019 7058 8.075574 CACAAAATGCACAAAAGTGTAGATCTA 58.924 33.333 0.00 0.00 35.72 1.98
3035 7074 2.617308 CAACAAATGGCCACAAAATGCA 59.383 40.909 8.16 0.00 0.00 3.96
3038 7077 2.617774 GCACAACAAATGGCCACAAAAT 59.382 40.909 8.16 0.00 0.00 1.82
3039 7078 2.012673 GCACAACAAATGGCCACAAAA 58.987 42.857 8.16 0.00 0.00 2.44
3049 7088 4.344679 TGGAGGATTGAAAGCACAACAAAT 59.655 37.500 0.00 0.00 32.50 2.32
3065 7104 3.921486 AGATATTGAAGCCCATGGAGGAT 59.079 43.478 15.22 0.00 41.22 3.24
3070 7109 6.015940 GGAGTAAAAGATATTGAAGCCCATGG 60.016 42.308 4.14 4.14 0.00 3.66
3072 7111 6.071320 GGGAGTAAAAGATATTGAAGCCCAT 58.929 40.000 0.00 0.00 0.00 4.00
3075 7114 6.017852 CGAAGGGAGTAAAAGATATTGAAGCC 60.018 42.308 0.00 0.00 0.00 4.35
3232 7271 8.997734 AGAGACATATTTCCTCTGTTCCTAAAT 58.002 33.333 0.00 0.00 36.07 1.40
3233 7272 8.380742 AGAGACATATTTCCTCTGTTCCTAAA 57.619 34.615 0.00 0.00 36.07 1.85
3234 7273 7.979786 AGAGACATATTTCCTCTGTTCCTAA 57.020 36.000 0.00 0.00 36.07 2.69
3235 7274 7.841729 AGAAGAGACATATTTCCTCTGTTCCTA 59.158 37.037 0.00 0.00 35.77 2.94
3236 7275 6.671779 AGAAGAGACATATTTCCTCTGTTCCT 59.328 38.462 0.00 0.00 35.77 3.36
3237 7276 6.883744 AGAAGAGACATATTTCCTCTGTTCC 58.116 40.000 0.00 0.00 35.77 3.62
3238 7277 6.983890 GGAGAAGAGACATATTTCCTCTGTTC 59.016 42.308 0.00 0.00 37.35 3.18
3239 7278 6.126911 GGGAGAAGAGACATATTTCCTCTGTT 60.127 42.308 0.00 0.00 37.35 3.16
3240 7279 5.365314 GGGAGAAGAGACATATTTCCTCTGT 59.635 44.000 0.00 0.00 37.35 3.41
3241 7280 5.602145 AGGGAGAAGAGACATATTTCCTCTG 59.398 44.000 0.00 0.00 37.35 3.35
3242 7281 5.787327 AGGGAGAAGAGACATATTTCCTCT 58.213 41.667 0.00 0.00 38.79 3.69
3243 7282 6.551601 TGTAGGGAGAAGAGACATATTTCCTC 59.448 42.308 0.00 0.00 0.00 3.71
3244 7283 6.325286 GTGTAGGGAGAAGAGACATATTTCCT 59.675 42.308 0.00 0.00 0.00 3.36
3245 7284 6.463190 GGTGTAGGGAGAAGAGACATATTTCC 60.463 46.154 0.00 0.00 0.00 3.13
3246 7285 6.098409 TGGTGTAGGGAGAAGAGACATATTTC 59.902 42.308 0.00 0.00 0.00 2.17
3247 7286 5.964477 TGGTGTAGGGAGAAGAGACATATTT 59.036 40.000 0.00 0.00 0.00 1.40
3248 7287 5.364157 GTGGTGTAGGGAGAAGAGACATATT 59.636 44.000 0.00 0.00 0.00 1.28
3249 7288 4.896482 GTGGTGTAGGGAGAAGAGACATAT 59.104 45.833 0.00 0.00 0.00 1.78
3250 7289 4.264217 TGTGGTGTAGGGAGAAGAGACATA 60.264 45.833 0.00 0.00 0.00 2.29
3251 7290 3.100671 GTGGTGTAGGGAGAAGAGACAT 58.899 50.000 0.00 0.00 0.00 3.06
3252 7291 2.158370 TGTGGTGTAGGGAGAAGAGACA 60.158 50.000 0.00 0.00 0.00 3.41
3253 7292 2.231721 GTGTGGTGTAGGGAGAAGAGAC 59.768 54.545 0.00 0.00 0.00 3.36
3254 7293 2.526432 GTGTGGTGTAGGGAGAAGAGA 58.474 52.381 0.00 0.00 0.00 3.10
3255 7294 1.202582 CGTGTGGTGTAGGGAGAAGAG 59.797 57.143 0.00 0.00 0.00 2.85
3256 7295 1.254026 CGTGTGGTGTAGGGAGAAGA 58.746 55.000 0.00 0.00 0.00 2.87
3257 7296 0.966920 ACGTGTGGTGTAGGGAGAAG 59.033 55.000 0.00 0.00 0.00 2.85
3258 7297 1.069513 CAACGTGTGGTGTAGGGAGAA 59.930 52.381 0.00 0.00 0.00 2.87
3259 7298 0.677288 CAACGTGTGGTGTAGGGAGA 59.323 55.000 0.00 0.00 0.00 3.71
3260 7299 0.949105 GCAACGTGTGGTGTAGGGAG 60.949 60.000 0.00 0.00 0.00 4.30
3261 7300 1.070105 GCAACGTGTGGTGTAGGGA 59.930 57.895 0.00 0.00 0.00 4.20
3262 7301 0.605319 ATGCAACGTGTGGTGTAGGG 60.605 55.000 0.00 0.00 0.00 3.53
3263 7302 1.196808 GAATGCAACGTGTGGTGTAGG 59.803 52.381 0.00 0.00 0.00 3.18
3264 7303 1.136363 CGAATGCAACGTGTGGTGTAG 60.136 52.381 8.20 0.00 0.00 2.74
3265 7304 0.862490 CGAATGCAACGTGTGGTGTA 59.138 50.000 8.20 0.00 0.00 2.90
3266 7305 1.092921 ACGAATGCAACGTGTGGTGT 61.093 50.000 18.59 0.00 42.37 4.16
3267 7306 0.384230 GACGAATGCAACGTGTGGTG 60.384 55.000 22.86 0.00 43.97 4.17
3268 7307 1.827315 CGACGAATGCAACGTGTGGT 61.827 55.000 22.86 2.41 43.97 4.16
3269 7308 1.154672 CGACGAATGCAACGTGTGG 60.155 57.895 22.86 10.80 43.97 4.17
3270 7309 1.788203 GCGACGAATGCAACGTGTG 60.788 57.895 22.86 16.48 43.97 3.82
3271 7310 1.886861 GAGCGACGAATGCAACGTGT 61.887 55.000 22.86 10.18 43.97 4.49
3272 7311 1.225475 GAGCGACGAATGCAACGTG 60.225 57.895 22.86 16.32 43.97 4.49
3273 7312 1.014044 ATGAGCGACGAATGCAACGT 61.014 50.000 19.17 19.17 46.58 3.99
3274 7313 1.709760 ATGAGCGACGAATGCAACG 59.290 52.632 13.58 13.58 33.85 4.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.