Multiple sequence alignment - TraesCS2D01G526600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G526600 chr2D 100.000 2310 0 0 1 2310 614820537 614818228 0.000000e+00 4266.0
1 TraesCS2D01G526600 chr2D 78.021 1324 162 70 80 1358 614812724 614811485 0.000000e+00 713.0
2 TraesCS2D01G526600 chr2D 83.541 401 36 11 966 1360 614804910 614804534 4.720000e-92 348.0
3 TraesCS2D01G526600 chr2D 77.916 643 70 31 80 710 614807057 614806475 3.680000e-88 335.0
4 TraesCS2D01G526600 chr2D 91.729 133 11 0 695 827 614805147 614805015 3.920000e-43 185.0
5 TraesCS2D01G526600 chr2D 93.043 115 8 0 1355 1469 525935414 525935528 3.950000e-38 169.0
6 TraesCS2D01G526600 chr2D 91.667 120 8 2 1346 1464 14813406 14813524 5.110000e-37 165.0
7 TraesCS2D01G526600 chr2A 90.856 864 50 12 1463 2307 745111796 745110943 0.000000e+00 1131.0
8 TraesCS2D01G526600 chr2A 89.018 774 50 12 612 1360 745112557 745111794 0.000000e+00 926.0
9 TraesCS2D01G526600 chr2A 79.819 1328 148 49 80 1360 745093734 745092480 0.000000e+00 857.0
10 TraesCS2D01G526600 chr2A 87.080 387 25 9 170 546 745121229 745120858 4.590000e-112 414.0
11 TraesCS2D01G526600 chr2A 91.319 288 17 6 409 693 745097656 745097374 1.000000e-103 387.0
12 TraesCS2D01G526600 chr2A 78.719 531 69 26 851 1358 745097221 745096712 4.790000e-82 315.0
13 TraesCS2D01G526600 chr2A 89.809 157 12 3 534 686 745112904 745112748 5.030000e-47 198.0
14 TraesCS2D01G526600 chr2A 87.952 166 13 5 350 515 745112750 745112592 3.030000e-44 189.0
15 TraesCS2D01G526600 chr2A 83.770 191 12 9 1 172 745121656 745121466 1.840000e-36 163.0
16 TraesCS2D01G526600 chr2B 92.398 513 21 7 19 520 749184519 749184014 0.000000e+00 715.0
17 TraesCS2D01G526600 chr2B 92.237 438 21 7 1463 1896 749181142 749180714 1.960000e-170 608.0
18 TraesCS2D01G526600 chr2B 82.627 731 67 29 643 1360 749139452 749138769 1.980000e-165 592.0
19 TraesCS2D01G526600 chr2B 91.451 386 29 2 975 1360 749181521 749181140 5.650000e-146 527.0
20 TraesCS2D01G526600 chr2B 80.204 783 85 38 620 1358 749148384 749147628 7.310000e-145 523.0
21 TraesCS2D01G526600 chr2B 82.176 432 56 15 90 515 749153104 749152688 3.650000e-93 351.0
22 TraesCS2D01G526600 chr2B 88.809 277 16 6 2044 2307 749179089 749178815 2.210000e-85 326.0
23 TraesCS2D01G526600 chr2B 88.263 213 21 4 531 742 749183509 749183300 3.810000e-63 252.0
24 TraesCS2D01G526600 chr2B 84.513 226 19 4 770 979 749183302 749183077 2.330000e-50 209.0
25 TraesCS2D01G526600 chr2B 92.035 113 8 1 987 1098 749044462 749044350 8.540000e-35 158.0
26 TraesCS2D01G526600 chr2B 95.238 42 2 0 853 894 749148087 749148046 1.480000e-07 67.6
27 TraesCS2D01G526600 chr4B 93.333 120 6 2 1352 1470 491089010 491088892 2.360000e-40 176.0
28 TraesCS2D01G526600 chr1D 93.277 119 7 1 1349 1466 44309798 44309916 8.480000e-40 174.0
29 TraesCS2D01G526600 chr1D 92.437 119 8 1 1349 1466 44274600 44274718 3.950000e-38 169.0
30 TraesCS2D01G526600 chr4A 94.595 111 6 0 1354 1464 692657343 692657453 3.050000e-39 172.0
31 TraesCS2D01G526600 chr7B 94.595 111 5 1 1354 1464 741544743 741544852 1.100000e-38 171.0
32 TraesCS2D01G526600 chr3D 91.870 123 9 1 1346 1467 589199583 589199461 1.100000e-38 171.0
33 TraesCS2D01G526600 chr5B 93.750 112 7 0 1358 1469 679351644 679351533 3.950000e-38 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G526600 chr2D 614818228 614820537 2309 True 4266.000000 4266 100.000000 1 2310 1 chr2D.!!$R2 2309
1 TraesCS2D01G526600 chr2D 614811485 614812724 1239 True 713.000000 713 78.021000 80 1358 1 chr2D.!!$R1 1278
2 TraesCS2D01G526600 chr2D 614804534 614807057 2523 True 289.333333 348 84.395333 80 1360 3 chr2D.!!$R3 1280
3 TraesCS2D01G526600 chr2A 745110943 745112904 1961 True 611.000000 1131 89.408750 350 2307 4 chr2A.!!$R2 1957
4 TraesCS2D01G526600 chr2A 745092480 745097656 5176 True 519.666667 857 83.285667 80 1360 3 chr2A.!!$R1 1280
5 TraesCS2D01G526600 chr2A 745120858 745121656 798 True 288.500000 414 85.425000 1 546 2 chr2A.!!$R3 545
6 TraesCS2D01G526600 chr2B 749138769 749139452 683 True 592.000000 592 82.627000 643 1360 1 chr2B.!!$R2 717
7 TraesCS2D01G526600 chr2B 749178815 749184519 5704 True 439.500000 715 89.611833 19 2307 6 chr2B.!!$R5 2288
8 TraesCS2D01G526600 chr2B 749147628 749148384 756 True 295.300000 523 87.721000 620 1358 2 chr2B.!!$R4 738

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
768 6804 0.248134 CACTACGTCCTAGTGCTCGC 60.248 60.0 4.13 0.0 44.71 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2042 11226 0.46729 TCAGGTGAAGGCCAACCAAC 60.467 55.0 20.66 11.15 39.06 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 7.483691 GCCTGTTTATATAAAGTTGGTCAAACG 59.516 37.037 8.18 0.00 44.04 3.60
150 3998 6.390758 ACCAGGCATCATCATAATATGGGATA 59.609 38.462 0.00 0.00 0.00 2.59
277 4374 4.278419 TCCCGTATACTCATGTCATGTGAG 59.722 45.833 19.19 11.10 46.60 3.51
465 4569 7.169308 CGTTTCAATAGTCGCCTTGATTATAGT 59.831 37.037 0.00 0.00 30.07 2.12
466 4570 9.472361 GTTTCAATAGTCGCCTTGATTATAGTA 57.528 33.333 0.00 0.00 30.07 1.82
504 4608 5.106673 GGTCTTGCTGTTAATAGTGGACAAC 60.107 44.000 16.22 4.56 0.00 3.32
516 4620 2.799126 TGGACAACCAACAACTCTGT 57.201 45.000 0.00 0.00 43.91 3.41
549 5206 2.434884 CCAGTAGCTGGTGGCGTG 60.435 66.667 6.99 0.00 45.82 5.34
550 5207 3.240134 CCAGTAGCTGGTGGCGTGT 62.240 63.158 6.99 0.00 45.82 4.49
579 5236 3.119352 GCAAGTTGCAATAAGAAGAGGGG 60.119 47.826 22.90 0.00 44.26 4.79
607 5264 4.169059 TCCATTTGGGAATGTGATCGAT 57.831 40.909 0.00 0.00 44.80 3.59
617 5274 5.510349 GGGAATGTGATCGATCAGAAGATGA 60.510 44.000 27.95 7.02 43.70 2.92
702 6702 0.608130 CCCTCGATCCCATAATGCGA 59.392 55.000 0.00 0.00 0.00 5.10
712 6712 2.408050 CCATAATGCGACTAGTGGAGC 58.592 52.381 9.33 8.22 0.00 4.70
742 6778 1.967597 CTGTCGCGCTCTGAGTACGA 61.968 60.000 16.48 16.48 0.00 3.43
743 6779 1.297012 GTCGCGCTCTGAGTACGAG 60.297 63.158 19.50 11.70 32.76 4.18
744 6780 1.740664 TCGCGCTCTGAGTACGAGT 60.741 57.895 16.48 0.00 0.00 4.18
745 6781 0.459063 TCGCGCTCTGAGTACGAGTA 60.459 55.000 16.48 0.41 0.00 2.59
746 6782 0.582482 CGCGCTCTGAGTACGAGTAT 59.418 55.000 5.56 0.00 0.00 2.12
747 6783 1.657816 CGCGCTCTGAGTACGAGTATG 60.658 57.143 5.56 0.00 0.00 2.39
748 6784 1.334239 GCGCTCTGAGTACGAGTATGG 60.334 57.143 0.00 0.00 0.00 2.74
749 6785 1.334239 CGCTCTGAGTACGAGTATGGC 60.334 57.143 6.53 0.00 0.00 4.40
750 6786 1.676529 GCTCTGAGTACGAGTATGGCA 59.323 52.381 6.53 0.00 0.00 4.92
751 6787 2.541999 GCTCTGAGTACGAGTATGGCAC 60.542 54.545 6.53 0.00 0.00 5.01
752 6788 2.946329 CTCTGAGTACGAGTATGGCACT 59.054 50.000 0.00 0.00 41.47 4.40
753 6789 4.127907 CTCTGAGTACGAGTATGGCACTA 58.872 47.826 0.00 0.00 37.72 2.74
754 6790 3.875727 TCTGAGTACGAGTATGGCACTAC 59.124 47.826 0.00 0.00 37.72 2.73
755 6791 2.610833 TGAGTACGAGTATGGCACTACG 59.389 50.000 0.00 0.00 37.72 3.51
756 6792 2.611292 GAGTACGAGTATGGCACTACGT 59.389 50.000 13.29 13.29 41.08 3.57
757 6793 2.611292 AGTACGAGTATGGCACTACGTC 59.389 50.000 12.43 6.80 39.78 4.34
758 6794 0.737219 ACGAGTATGGCACTACGTCC 59.263 55.000 0.00 0.00 37.72 4.79
759 6795 1.022735 CGAGTATGGCACTACGTCCT 58.977 55.000 0.00 0.00 37.72 3.85
760 6796 2.216046 CGAGTATGGCACTACGTCCTA 58.784 52.381 0.00 0.00 37.72 2.94
761 6797 2.223611 CGAGTATGGCACTACGTCCTAG 59.776 54.545 0.00 0.00 37.72 3.02
762 6798 3.212685 GAGTATGGCACTACGTCCTAGT 58.787 50.000 0.00 0.00 37.72 2.57
767 6803 3.899836 CACTACGTCCTAGTGCTCG 57.100 57.895 4.13 0.00 44.71 5.03
768 6804 0.248134 CACTACGTCCTAGTGCTCGC 60.248 60.000 4.13 0.00 44.71 5.03
769 6805 0.675837 ACTACGTCCTAGTGCTCGCA 60.676 55.000 0.00 0.00 34.08 5.10
770 6806 0.248134 CTACGTCCTAGTGCTCGCAC 60.248 60.000 13.86 13.86 46.50 5.34
779 6815 4.908687 TGCTCGCACGTGCTTGGT 62.909 61.111 35.27 0.00 39.32 3.67
786 6826 1.941812 CACGTGCTTGGTCCTTGTC 59.058 57.895 0.82 0.00 0.00 3.18
795 6835 3.745797 GCTTGGTCCTTGTCTGAAGAACT 60.746 47.826 0.00 0.00 0.00 3.01
945 7050 0.737715 CCAGCACTGTTCGAGTAGCC 60.738 60.000 0.00 0.00 31.73 3.93
963 7070 1.878522 CAAGCTAGTGGCGGTAGCG 60.879 63.158 10.57 10.57 46.37 4.26
1003 8670 1.690633 ACCAGCTCCGATCCCATGT 60.691 57.895 0.00 0.00 0.00 3.21
1025 8692 4.521062 CTTCGCCTCCCAGCTCCG 62.521 72.222 0.00 0.00 0.00 4.63
1112 8779 4.931002 GGGTACGTAAACACACACATGTAT 59.069 41.667 0.00 0.00 36.72 2.29
1115 8782 4.062293 ACGTAAACACACACATGTATGCT 58.938 39.130 3.46 0.00 36.72 3.79
1116 8783 4.084066 ACGTAAACACACACATGTATGCTG 60.084 41.667 3.46 4.72 36.72 4.41
1141 8815 1.065401 CTGAAAACGGCACTGCTGAAA 59.935 47.619 17.08 0.00 38.46 2.69
1148 8825 1.534595 CGGCACTGCTGAAATATTGCC 60.535 52.381 3.48 9.70 45.05 4.52
1153 8839 3.004106 CACTGCTGAAATATTGCCCTAGC 59.996 47.826 0.00 0.00 40.48 3.42
1236 8933 2.125633 GGAGGCTTTCCGGACGAC 60.126 66.667 1.83 0.00 35.91 4.34
1279 8976 1.065491 TCCAGAAATCACCCGGATGTG 60.065 52.381 0.73 3.16 36.02 3.21
1321 9018 6.377327 CAGGTCAATTAACATGGATGGTAC 57.623 41.667 0.00 0.00 27.88 3.34
1351 9052 1.872313 GCTAGCCTCTACGTACGTCAT 59.128 52.381 26.53 2.59 0.00 3.06
1360 9061 5.925397 CCTCTACGTACGTCATAGACATACT 59.075 44.000 26.53 0.00 30.39 2.12
1361 9062 6.423302 CCTCTACGTACGTCATAGACATACTT 59.577 42.308 26.53 0.00 30.39 2.24
1362 9063 7.359097 CCTCTACGTACGTCATAGACATACTTC 60.359 44.444 26.53 0.00 30.39 3.01
1363 9064 5.415415 ACGTACGTCATAGACATACTTCC 57.585 43.478 16.72 0.00 30.39 3.46
1364 9065 5.121811 ACGTACGTCATAGACATACTTCCT 58.878 41.667 16.72 0.00 30.39 3.36
1365 9066 5.587844 ACGTACGTCATAGACATACTTCCTT 59.412 40.000 16.72 0.00 30.39 3.36
1366 9067 6.134730 CGTACGTCATAGACATACTTCCTTC 58.865 44.000 7.22 0.00 30.39 3.46
1367 9068 5.171147 ACGTCATAGACATACTTCCTTCG 57.829 43.478 0.00 0.00 32.09 3.79
1368 9069 4.639310 ACGTCATAGACATACTTCCTTCGT 59.361 41.667 0.00 0.00 32.09 3.85
1369 9070 5.125097 ACGTCATAGACATACTTCCTTCGTT 59.875 40.000 0.00 0.00 32.09 3.85
1370 9071 5.681982 CGTCATAGACATACTTCCTTCGTTC 59.318 44.000 0.00 0.00 32.09 3.95
1371 9072 5.681982 GTCATAGACATACTTCCTTCGTTCG 59.318 44.000 0.00 0.00 32.09 3.95
1372 9073 3.505464 AGACATACTTCCTTCGTTCGG 57.495 47.619 0.00 0.00 0.00 4.30
1373 9074 3.087031 AGACATACTTCCTTCGTTCGGA 58.913 45.455 0.00 0.00 0.00 4.55
1374 9075 3.508793 AGACATACTTCCTTCGTTCGGAA 59.491 43.478 0.00 0.00 38.18 4.30
1375 9076 4.159879 AGACATACTTCCTTCGTTCGGAAT 59.840 41.667 0.00 0.00 39.64 3.01
1376 9077 4.828829 ACATACTTCCTTCGTTCGGAATT 58.171 39.130 0.00 2.21 39.64 2.17
1377 9078 5.969423 ACATACTTCCTTCGTTCGGAATTA 58.031 37.500 0.00 3.96 39.64 1.40
1378 9079 5.809051 ACATACTTCCTTCGTTCGGAATTAC 59.191 40.000 0.00 0.00 39.64 1.89
1379 9080 4.532314 ACTTCCTTCGTTCGGAATTACT 57.468 40.909 0.00 0.00 39.64 2.24
1380 9081 4.891260 ACTTCCTTCGTTCGGAATTACTT 58.109 39.130 0.00 0.00 39.64 2.24
1381 9082 4.689345 ACTTCCTTCGTTCGGAATTACTTG 59.311 41.667 0.00 0.00 39.64 3.16
1382 9083 4.261578 TCCTTCGTTCGGAATTACTTGT 57.738 40.909 0.00 0.00 33.26 3.16
1383 9084 4.240096 TCCTTCGTTCGGAATTACTTGTC 58.760 43.478 0.00 0.00 33.26 3.18
1384 9085 3.060363 CCTTCGTTCGGAATTACTTGTCG 59.940 47.826 0.00 0.00 33.26 4.35
1385 9086 3.287312 TCGTTCGGAATTACTTGTCGT 57.713 42.857 0.00 0.00 0.00 4.34
1386 9087 4.418013 TCGTTCGGAATTACTTGTCGTA 57.582 40.909 0.00 0.00 0.00 3.43
1387 9088 4.406069 TCGTTCGGAATTACTTGTCGTAG 58.594 43.478 0.00 0.00 0.00 3.51
1388 9089 4.154015 TCGTTCGGAATTACTTGTCGTAGA 59.846 41.667 0.00 0.00 0.00 2.59
1389 9090 4.853196 CGTTCGGAATTACTTGTCGTAGAA 59.147 41.667 0.00 0.00 39.69 2.10
1390 9091 5.343058 CGTTCGGAATTACTTGTCGTAGAAA 59.657 40.000 0.00 0.00 39.69 2.52
1391 9092 6.034256 CGTTCGGAATTACTTGTCGTAGAAAT 59.966 38.462 0.00 0.00 39.69 2.17
1392 9093 6.880822 TCGGAATTACTTGTCGTAGAAATG 57.119 37.500 0.00 0.00 39.69 2.32
1393 9094 5.808540 TCGGAATTACTTGTCGTAGAAATGG 59.191 40.000 0.00 0.00 39.69 3.16
1394 9095 5.808540 CGGAATTACTTGTCGTAGAAATGGA 59.191 40.000 0.00 0.00 39.69 3.41
1395 9096 6.479001 CGGAATTACTTGTCGTAGAAATGGAT 59.521 38.462 0.00 0.00 39.69 3.41
1396 9097 7.516785 CGGAATTACTTGTCGTAGAAATGGATG 60.517 40.741 0.00 0.00 39.69 3.51
1397 9098 7.280205 GGAATTACTTGTCGTAGAAATGGATGT 59.720 37.037 0.00 0.00 39.69 3.06
1398 9099 9.309516 GAATTACTTGTCGTAGAAATGGATGTA 57.690 33.333 0.00 0.00 39.69 2.29
1399 9100 9.832445 AATTACTTGTCGTAGAAATGGATGTAT 57.168 29.630 0.00 0.00 39.69 2.29
1400 9101 8.867112 TTACTTGTCGTAGAAATGGATGTATC 57.133 34.615 0.00 0.00 39.69 2.24
1401 9102 7.113658 ACTTGTCGTAGAAATGGATGTATCT 57.886 36.000 0.00 0.00 39.69 1.98
1402 9103 8.234136 ACTTGTCGTAGAAATGGATGTATCTA 57.766 34.615 0.00 0.00 39.69 1.98
1403 9104 8.353684 ACTTGTCGTAGAAATGGATGTATCTAG 58.646 37.037 0.00 0.00 39.69 2.43
1404 9105 8.459911 TTGTCGTAGAAATGGATGTATCTAGA 57.540 34.615 0.00 0.00 39.69 2.43
1405 9106 7.872881 TGTCGTAGAAATGGATGTATCTAGAC 58.127 38.462 0.00 0.00 39.69 2.59
1406 9107 7.501225 TGTCGTAGAAATGGATGTATCTAGACA 59.499 37.037 0.00 0.00 39.69 3.41
1407 9108 8.516234 GTCGTAGAAATGGATGTATCTAGACAT 58.484 37.037 0.00 0.00 40.04 3.06
1408 9109 9.078990 TCGTAGAAATGGATGTATCTAGACATT 57.921 33.333 0.00 0.00 40.18 2.71
1409 9110 9.698309 CGTAGAAATGGATGTATCTAGACATTT 57.302 33.333 13.59 13.59 40.18 2.32
1436 9137 8.589335 TTAGTTCTAGATACATTCATTTCCGC 57.411 34.615 0.00 0.00 0.00 5.54
1437 9138 5.692204 AGTTCTAGATACATTCATTTCCGCG 59.308 40.000 0.00 0.00 0.00 6.46
1438 9139 5.447624 TCTAGATACATTCATTTCCGCGA 57.552 39.130 8.23 0.00 0.00 5.87
1439 9140 5.220381 TCTAGATACATTCATTTCCGCGAC 58.780 41.667 8.23 0.00 0.00 5.19
1440 9141 3.792401 AGATACATTCATTTCCGCGACA 58.208 40.909 8.23 0.00 0.00 4.35
1441 9142 4.188462 AGATACATTCATTTCCGCGACAA 58.812 39.130 8.23 0.00 0.00 3.18
1442 9143 2.900122 ACATTCATTTCCGCGACAAG 57.100 45.000 8.23 0.00 0.00 3.16
1443 9144 2.151202 ACATTCATTTCCGCGACAAGT 58.849 42.857 8.23 0.00 0.00 3.16
1444 9145 3.331150 ACATTCATTTCCGCGACAAGTA 58.669 40.909 8.23 0.00 0.00 2.24
1445 9146 3.749088 ACATTCATTTCCGCGACAAGTAA 59.251 39.130 8.23 0.00 0.00 2.24
1446 9147 4.394920 ACATTCATTTCCGCGACAAGTAAT 59.605 37.500 8.23 1.19 0.00 1.89
1447 9148 5.106317 ACATTCATTTCCGCGACAAGTAATT 60.106 36.000 8.23 0.00 0.00 1.40
1448 9149 4.593597 TCATTTCCGCGACAAGTAATTC 57.406 40.909 8.23 0.00 0.00 2.17
1449 9150 3.997681 TCATTTCCGCGACAAGTAATTCA 59.002 39.130 8.23 0.00 0.00 2.57
1450 9151 4.092821 TCATTTCCGCGACAAGTAATTCAG 59.907 41.667 8.23 0.00 0.00 3.02
1451 9152 3.306917 TTCCGCGACAAGTAATTCAGA 57.693 42.857 8.23 0.00 0.00 3.27
1452 9153 3.306917 TCCGCGACAAGTAATTCAGAA 57.693 42.857 8.23 0.00 0.00 3.02
1453 9154 2.991190 TCCGCGACAAGTAATTCAGAAC 59.009 45.455 8.23 0.00 0.00 3.01
1454 9155 2.222508 CCGCGACAAGTAATTCAGAACG 60.223 50.000 8.23 0.00 0.00 3.95
1455 9156 2.222508 CGCGACAAGTAATTCAGAACGG 60.223 50.000 0.00 0.00 0.00 4.44
1456 9157 2.991190 GCGACAAGTAATTCAGAACGGA 59.009 45.455 0.00 0.00 0.00 4.69
1457 9158 3.060895 GCGACAAGTAATTCAGAACGGAG 59.939 47.826 0.00 0.00 0.00 4.63
1458 9159 3.612860 CGACAAGTAATTCAGAACGGAGG 59.387 47.826 0.00 0.00 0.00 4.30
1459 9160 3.933332 GACAAGTAATTCAGAACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
1460 9161 3.581332 ACAAGTAATTCAGAACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
1461 9162 4.184629 CAAGTAATTCAGAACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
1462 9163 3.442076 AGTAATTCAGAACGGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
1463 9164 4.607239 AGTAATTCAGAACGGAGGGAGTA 58.393 43.478 0.00 0.00 0.00 2.59
1464 9165 3.889520 AATTCAGAACGGAGGGAGTAC 57.110 47.619 0.00 0.00 0.00 2.73
1521 9222 3.854240 CAGTGTGCTCAAGATAGTGTACG 59.146 47.826 0.00 0.00 0.00 3.67
1536 9237 0.584876 GTACGTGCTGGTGTGTTTCC 59.415 55.000 0.00 0.00 0.00 3.13
1553 9254 9.959749 GTGTGTTTCCAAACTTCAGATAATAAA 57.040 29.630 3.92 0.00 39.59 1.40
1595 9300 8.871686 AATGTTTCAGTTTGTTGATTCCTTAC 57.128 30.769 0.00 0.00 0.00 2.34
1666 9371 5.048364 TGTTCTGTTGTGTGCTTGTAACTTT 60.048 36.000 0.00 0.00 0.00 2.66
1669 9374 6.548171 TCTGTTGTGTGCTTGTAACTTTTAC 58.452 36.000 0.00 0.00 0.00 2.01
1698 9403 7.201644 CCAATAAAGCAGTAACTTGATCGACAT 60.202 37.037 0.00 0.00 0.00 3.06
1718 9423 7.967854 TCGACATGCTTGTTAATTTTCTAATGG 59.032 33.333 6.70 0.00 35.79 3.16
1749 9454 4.834357 TGTTGTGTACGTAGAAGCTACA 57.166 40.909 0.00 0.00 0.00 2.74
1761 9466 7.918643 ACGTAGAAGCTACAGTCTTAAGATAC 58.081 38.462 8.75 2.37 0.00 2.24
1792 9497 3.606886 CCAACACGGTGAAGCTAGT 57.393 52.632 16.29 0.00 0.00 2.57
1793 9498 1.878953 CCAACACGGTGAAGCTAGTT 58.121 50.000 16.29 0.00 0.00 2.24
1794 9499 1.798813 CCAACACGGTGAAGCTAGTTC 59.201 52.381 16.29 0.00 35.48 3.01
1795 9500 1.455786 CAACACGGTGAAGCTAGTTCG 59.544 52.381 16.29 0.00 38.09 3.95
1802 9507 3.707793 GGTGAAGCTAGTTCGGTATGAG 58.292 50.000 0.00 0.00 38.09 2.90
1885 9592 1.083015 CGACCTTCGCACGTTTTGG 60.083 57.895 0.00 0.00 31.14 3.28
1897 9604 7.542534 TCGCACGTTTTGGTAATATTAGAAT 57.457 32.000 0.00 0.00 0.00 2.40
2003 10585 8.145122 TGTCATTTGGTAAGGTTGTTAATTTCC 58.855 33.333 0.00 0.00 0.00 3.13
2008 10590 6.243148 TGGTAAGGTTGTTAATTTCCTCCTC 58.757 40.000 0.00 0.00 0.00 3.71
2018 10600 1.371467 TTTCCTCCTCTGCCATTGGA 58.629 50.000 6.95 0.00 0.00 3.53
2030 10612 7.951806 TCCTCTGCCATTGGATTTGATTATTAT 59.048 33.333 6.95 0.00 0.00 1.28
2059 11243 1.152546 GGTTGGTTGGCCTTCACCT 60.153 57.895 17.22 0.00 35.27 4.00
2134 11323 7.492669 CGTTTTGGATATAGACACAGTCTTCAT 59.507 37.037 4.85 0.00 40.28 2.57
2209 11399 4.081087 CGGGAGGAGGAGTATCTTTTCAAA 60.081 45.833 0.00 0.00 33.73 2.69
2214 11404 8.655901 GGAGGAGGAGTATCTTTTCAAATAGAT 58.344 37.037 2.10 2.10 35.41 1.98
2247 11437 6.905544 GGTAACAAACTCTACATTAGGAGC 57.094 41.667 0.00 0.00 33.29 4.70
2248 11438 5.519206 GGTAACAAACTCTACATTAGGAGCG 59.481 44.000 0.00 0.00 33.29 5.03
2249 11439 5.401531 AACAAACTCTACATTAGGAGCGA 57.598 39.130 0.00 0.00 33.29 4.93
2257 11447 6.535508 ACTCTACATTAGGAGCGACATTTTTC 59.464 38.462 0.00 0.00 33.29 2.29
2273 11463 1.631405 TTTCAAGGGAACATGGCAGG 58.369 50.000 0.00 0.00 31.35 4.85
2307 11503 7.488187 AAAAGCACAGCATATCTAGTATGTG 57.512 36.000 11.50 0.00 41.86 3.21
2308 11504 5.144692 AGCACAGCATATCTAGTATGTGG 57.855 43.478 5.40 8.05 41.86 4.17
2309 11505 3.681897 GCACAGCATATCTAGTATGTGGC 59.318 47.826 5.40 0.00 41.86 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
202 4296 1.063912 ACATGTGTGACACGTTTGCAG 59.936 47.619 7.87 0.00 37.14 4.41
226 4320 1.544537 CCAGGAACGTTTCACATCCCA 60.545 52.381 9.76 0.00 32.15 4.37
227 4321 1.165270 CCAGGAACGTTTCACATCCC 58.835 55.000 9.76 0.15 32.15 3.85
277 4374 3.367498 CGATCTCCCAAATCGTAGGATCC 60.367 52.174 2.48 2.48 40.78 3.36
465 4569 1.301401 GACCGCGGCAAGGCATATA 60.301 57.895 28.58 0.00 0.00 0.86
466 4570 2.591715 GACCGCGGCAAGGCATAT 60.592 61.111 28.58 0.57 0.00 1.78
504 4608 0.673644 CCGGGCTACAGAGTTGTTGG 60.674 60.000 0.00 0.00 38.76 3.77
515 4619 0.393267 TGGTAAATGCACCGGGCTAC 60.393 55.000 6.32 5.44 45.15 3.58
516 4620 0.107410 CTGGTAAATGCACCGGGCTA 60.107 55.000 6.32 0.00 45.15 3.93
546 5203 0.040958 GCAACTTGCTCCAAGACACG 60.041 55.000 11.56 0.00 43.42 4.49
547 5204 1.024271 TGCAACTTGCTCCAAGACAC 58.976 50.000 14.78 1.64 45.31 3.67
548 5205 1.761449 TTGCAACTTGCTCCAAGACA 58.239 45.000 14.78 4.51 45.31 3.41
549 5206 4.216257 TCTTATTGCAACTTGCTCCAAGAC 59.784 41.667 14.78 2.25 45.31 3.01
550 5207 4.397420 TCTTATTGCAACTTGCTCCAAGA 58.603 39.130 14.78 14.88 45.31 3.02
551 5208 4.771590 TCTTATTGCAACTTGCTCCAAG 57.228 40.909 14.78 13.17 45.31 3.61
579 5236 3.106827 ACATTCCCAAATGGATTGACCC 58.893 45.455 0.00 0.00 45.48 4.46
584 5241 4.535781 TCGATCACATTCCCAAATGGATT 58.464 39.130 0.00 0.00 45.48 3.01
607 5264 3.696548 ACTGCTACACGATCATCTTCTGA 59.303 43.478 0.00 0.00 38.53 3.27
617 5274 0.108615 GCACTCCACTGCTACACGAT 60.109 55.000 0.00 0.00 34.06 3.73
618 5275 1.179174 AGCACTCCACTGCTACACGA 61.179 55.000 0.00 0.00 46.03 4.35
702 6702 2.195741 TCAGTACGTGCTCCACTAGT 57.804 50.000 2.06 0.00 31.34 2.57
712 6712 1.930816 GCGCGACAGTTCAGTACGTG 61.931 60.000 12.10 0.00 37.49 4.49
750 6786 2.869999 GTGCGAGCACTAGGACGTAGT 61.870 57.143 19.74 1.94 43.31 2.73
751 6787 0.248134 GTGCGAGCACTAGGACGTAG 60.248 60.000 19.74 0.60 43.12 3.51
752 6788 1.798735 GTGCGAGCACTAGGACGTA 59.201 57.895 19.74 0.00 43.12 3.57
753 6789 2.567049 GTGCGAGCACTAGGACGT 59.433 61.111 19.74 0.00 43.12 4.34
754 6790 2.577112 CGTGCGAGCACTAGGACG 60.577 66.667 23.39 10.00 44.16 4.79
755 6791 1.801913 CACGTGCGAGCACTAGGAC 60.802 63.158 23.39 0.00 44.16 3.85
756 6792 2.566529 CACGTGCGAGCACTAGGA 59.433 61.111 23.39 0.00 44.16 2.94
757 6793 3.181967 GCACGTGCGAGCACTAGG 61.182 66.667 26.77 14.26 44.16 3.02
767 6803 2.117941 GACAAGGACCAAGCACGTGC 62.118 60.000 32.79 32.79 42.49 5.34
768 6804 0.532862 AGACAAGGACCAAGCACGTG 60.533 55.000 12.28 12.28 0.00 4.49
769 6805 0.532862 CAGACAAGGACCAAGCACGT 60.533 55.000 0.00 0.00 0.00 4.49
770 6806 0.249868 TCAGACAAGGACCAAGCACG 60.250 55.000 0.00 0.00 0.00 5.34
771 6807 1.876156 CTTCAGACAAGGACCAAGCAC 59.124 52.381 0.00 0.00 0.00 4.40
772 6808 1.768275 TCTTCAGACAAGGACCAAGCA 59.232 47.619 0.00 0.00 0.00 3.91
775 6811 3.181454 GGAGTTCTTCAGACAAGGACCAA 60.181 47.826 0.00 0.00 0.00 3.67
779 6815 1.618837 CCGGAGTTCTTCAGACAAGGA 59.381 52.381 0.00 0.00 0.00 3.36
786 6826 2.383527 GCGCACCGGAGTTCTTCAG 61.384 63.158 9.46 0.00 0.00 3.02
829 6869 2.770802 CCTATCTCCATAGCCAGGGATG 59.229 54.545 0.00 0.00 33.24 3.51
830 6870 2.662113 TCCTATCTCCATAGCCAGGGAT 59.338 50.000 0.00 0.00 33.24 3.85
835 6888 3.141083 AGTGAGTCCTATCTCCATAGCCA 59.859 47.826 0.00 0.00 31.82 4.75
844 6898 3.748645 ACTGGTGAGTGAGTCCTATCT 57.251 47.619 0.00 0.00 0.00 1.98
945 7050 1.878522 CGCTACCGCCACTAGCTTG 60.879 63.158 0.00 0.00 40.39 4.01
963 7070 0.168788 TGCGTAATTCAAGCTGCTGC 59.831 50.000 1.35 7.62 40.05 5.25
1112 8779 1.785041 GCCGTTTTCAGAGTGCAGCA 61.785 55.000 0.00 0.00 0.00 4.41
1115 8782 0.463654 AGTGCCGTTTTCAGAGTGCA 60.464 50.000 0.00 0.00 0.00 4.57
1116 8783 0.040958 CAGTGCCGTTTTCAGAGTGC 60.041 55.000 0.00 0.00 0.00 4.40
1141 8815 4.916041 TCATTAGCAGCTAGGGCAATAT 57.084 40.909 1.49 0.00 41.70 1.28
1148 8825 3.037431 AGCGAATCATTAGCAGCTAGG 57.963 47.619 5.20 0.00 32.73 3.02
1153 8839 4.151335 GGACACATAGCGAATCATTAGCAG 59.849 45.833 5.20 0.00 0.00 4.24
1234 8931 0.879765 TCTCGACAACTTCCTCCGTC 59.120 55.000 0.00 0.00 0.00 4.79
1235 8932 1.473278 GATCTCGACAACTTCCTCCGT 59.527 52.381 0.00 0.00 0.00 4.69
1236 8933 1.472878 TGATCTCGACAACTTCCTCCG 59.527 52.381 0.00 0.00 0.00 4.63
1351 9052 4.264253 TCCGAACGAAGGAAGTATGTCTA 58.736 43.478 0.00 0.00 34.33 2.59
1361 9062 4.240096 GACAAGTAATTCCGAACGAAGGA 58.760 43.478 0.00 0.00 32.78 3.36
1362 9063 3.060363 CGACAAGTAATTCCGAACGAAGG 59.940 47.826 0.00 0.00 32.78 3.46
1363 9064 3.671928 ACGACAAGTAATTCCGAACGAAG 59.328 43.478 0.00 0.00 32.78 3.79
1364 9065 3.641648 ACGACAAGTAATTCCGAACGAA 58.358 40.909 0.00 0.00 34.14 3.85
1365 9066 3.287312 ACGACAAGTAATTCCGAACGA 57.713 42.857 0.00 0.00 0.00 3.85
1366 9067 4.406069 TCTACGACAAGTAATTCCGAACG 58.594 43.478 0.00 0.00 34.45 3.95
1367 9068 6.695292 TTTCTACGACAAGTAATTCCGAAC 57.305 37.500 0.00 0.00 34.45 3.95
1368 9069 6.311935 CCATTTCTACGACAAGTAATTCCGAA 59.688 38.462 0.00 0.00 34.45 4.30
1369 9070 5.808540 CCATTTCTACGACAAGTAATTCCGA 59.191 40.000 0.00 0.00 34.45 4.55
1370 9071 5.808540 TCCATTTCTACGACAAGTAATTCCG 59.191 40.000 0.00 0.00 34.45 4.30
1371 9072 7.280205 ACATCCATTTCTACGACAAGTAATTCC 59.720 37.037 0.00 0.00 34.45 3.01
1372 9073 8.197988 ACATCCATTTCTACGACAAGTAATTC 57.802 34.615 0.00 0.00 34.45 2.17
1373 9074 9.832445 ATACATCCATTTCTACGACAAGTAATT 57.168 29.630 0.00 0.00 34.45 1.40
1374 9075 9.477484 GATACATCCATTTCTACGACAAGTAAT 57.523 33.333 0.00 0.00 34.45 1.89
1375 9076 8.692710 AGATACATCCATTTCTACGACAAGTAA 58.307 33.333 0.00 0.00 34.45 2.24
1376 9077 8.234136 AGATACATCCATTTCTACGACAAGTA 57.766 34.615 0.00 0.00 0.00 2.24
1377 9078 7.113658 AGATACATCCATTTCTACGACAAGT 57.886 36.000 0.00 0.00 0.00 3.16
1378 9079 8.568794 TCTAGATACATCCATTTCTACGACAAG 58.431 37.037 0.00 0.00 0.00 3.16
1379 9080 8.350722 GTCTAGATACATCCATTTCTACGACAA 58.649 37.037 0.00 0.00 0.00 3.18
1380 9081 7.501225 TGTCTAGATACATCCATTTCTACGACA 59.499 37.037 0.00 0.00 32.64 4.35
1381 9082 7.872881 TGTCTAGATACATCCATTTCTACGAC 58.127 38.462 0.00 0.00 0.00 4.34
1382 9083 8.637196 ATGTCTAGATACATCCATTTCTACGA 57.363 34.615 0.00 0.00 35.08 3.43
1383 9084 9.698309 AAATGTCTAGATACATCCATTTCTACG 57.302 33.333 9.70 0.00 39.16 3.51
1410 9111 9.042008 GCGGAAATGAATGTATCTAGAACTAAA 57.958 33.333 0.00 0.00 0.00 1.85
1411 9112 7.381408 CGCGGAAATGAATGTATCTAGAACTAA 59.619 37.037 0.00 0.00 0.00 2.24
1412 9113 6.861572 CGCGGAAATGAATGTATCTAGAACTA 59.138 38.462 0.00 0.00 0.00 2.24
1413 9114 5.692204 CGCGGAAATGAATGTATCTAGAACT 59.308 40.000 0.00 0.00 0.00 3.01
1414 9115 5.690409 TCGCGGAAATGAATGTATCTAGAAC 59.310 40.000 6.13 0.00 0.00 3.01
1415 9116 5.690409 GTCGCGGAAATGAATGTATCTAGAA 59.310 40.000 6.13 0.00 0.00 2.10
1416 9117 5.220381 GTCGCGGAAATGAATGTATCTAGA 58.780 41.667 6.13 0.00 0.00 2.43
1417 9118 4.982295 TGTCGCGGAAATGAATGTATCTAG 59.018 41.667 6.13 0.00 0.00 2.43
1418 9119 4.939271 TGTCGCGGAAATGAATGTATCTA 58.061 39.130 6.13 0.00 0.00 1.98
1419 9120 3.792401 TGTCGCGGAAATGAATGTATCT 58.208 40.909 6.13 0.00 0.00 1.98
1420 9121 4.034048 ACTTGTCGCGGAAATGAATGTATC 59.966 41.667 6.13 0.00 0.00 2.24
1421 9122 3.938963 ACTTGTCGCGGAAATGAATGTAT 59.061 39.130 6.13 0.00 0.00 2.29
1422 9123 3.331150 ACTTGTCGCGGAAATGAATGTA 58.669 40.909 6.13 0.00 0.00 2.29
1423 9124 2.151202 ACTTGTCGCGGAAATGAATGT 58.849 42.857 6.13 0.00 0.00 2.71
1424 9125 2.900122 ACTTGTCGCGGAAATGAATG 57.100 45.000 6.13 0.00 0.00 2.67
1425 9126 5.123186 TGAATTACTTGTCGCGGAAATGAAT 59.877 36.000 6.13 0.00 0.00 2.57
1426 9127 4.452795 TGAATTACTTGTCGCGGAAATGAA 59.547 37.500 6.13 0.00 0.00 2.57
1427 9128 3.997681 TGAATTACTTGTCGCGGAAATGA 59.002 39.130 6.13 0.00 0.00 2.57
1428 9129 4.092821 TCTGAATTACTTGTCGCGGAAATG 59.907 41.667 6.13 0.00 0.00 2.32
1429 9130 4.250464 TCTGAATTACTTGTCGCGGAAAT 58.750 39.130 6.13 0.00 0.00 2.17
1430 9131 3.655486 TCTGAATTACTTGTCGCGGAAA 58.345 40.909 6.13 0.00 0.00 3.13
1431 9132 3.306917 TCTGAATTACTTGTCGCGGAA 57.693 42.857 6.13 0.00 0.00 4.30
1432 9133 2.991190 GTTCTGAATTACTTGTCGCGGA 59.009 45.455 6.13 0.00 0.00 5.54
1433 9134 2.222508 CGTTCTGAATTACTTGTCGCGG 60.223 50.000 6.13 0.00 0.00 6.46
1434 9135 2.222508 CCGTTCTGAATTACTTGTCGCG 60.223 50.000 0.00 0.00 0.00 5.87
1435 9136 2.991190 TCCGTTCTGAATTACTTGTCGC 59.009 45.455 0.00 0.00 0.00 5.19
1436 9137 3.612860 CCTCCGTTCTGAATTACTTGTCG 59.387 47.826 0.00 0.00 0.00 4.35
1437 9138 3.933332 CCCTCCGTTCTGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
1438 9139 3.581332 TCCCTCCGTTCTGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
1439 9140 4.184629 CTCCCTCCGTTCTGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
1440 9141 3.838903 ACTCCCTCCGTTCTGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
1441 9142 3.442076 ACTCCCTCCGTTCTGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
1442 9143 3.889520 ACTCCCTCCGTTCTGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
1443 9144 4.346730 TGTACTCCCTCCGTTCTGAATTA 58.653 43.478 0.00 0.00 0.00 1.40
1444 9145 3.170717 TGTACTCCCTCCGTTCTGAATT 58.829 45.455 0.00 0.00 0.00 2.17
1445 9146 2.816411 TGTACTCCCTCCGTTCTGAAT 58.184 47.619 0.00 0.00 0.00 2.57
1446 9147 2.297698 TGTACTCCCTCCGTTCTGAA 57.702 50.000 0.00 0.00 0.00 3.02
1447 9148 2.526888 ATGTACTCCCTCCGTTCTGA 57.473 50.000 0.00 0.00 0.00 3.27
1448 9149 3.488721 CGTTATGTACTCCCTCCGTTCTG 60.489 52.174 0.00 0.00 0.00 3.02
1449 9150 2.686915 CGTTATGTACTCCCTCCGTTCT 59.313 50.000 0.00 0.00 0.00 3.01
1450 9151 2.223665 CCGTTATGTACTCCCTCCGTTC 60.224 54.545 0.00 0.00 0.00 3.95
1451 9152 1.753073 CCGTTATGTACTCCCTCCGTT 59.247 52.381 0.00 0.00 0.00 4.44
1452 9153 1.396653 CCGTTATGTACTCCCTCCGT 58.603 55.000 0.00 0.00 0.00 4.69
1453 9154 0.031721 GCCGTTATGTACTCCCTCCG 59.968 60.000 0.00 0.00 0.00 4.63
1454 9155 0.391966 GGCCGTTATGTACTCCCTCC 59.608 60.000 0.00 0.00 0.00 4.30
1455 9156 0.031721 CGGCCGTTATGTACTCCCTC 59.968 60.000 19.50 0.00 0.00 4.30
1456 9157 0.685458 ACGGCCGTTATGTACTCCCT 60.685 55.000 28.70 0.00 0.00 4.20
1457 9158 0.529119 CACGGCCGTTATGTACTCCC 60.529 60.000 32.11 0.00 0.00 4.30
1458 9159 0.174162 ACACGGCCGTTATGTACTCC 59.826 55.000 32.11 0.00 0.00 3.85
1459 9160 1.274596 CACACGGCCGTTATGTACTC 58.725 55.000 32.11 0.00 0.00 2.59
1460 9161 0.108520 CCACACGGCCGTTATGTACT 60.109 55.000 32.11 0.00 0.00 2.73
1461 9162 2.375981 CCACACGGCCGTTATGTAC 58.624 57.895 32.11 0.00 0.00 2.90
1462 9163 4.915298 CCACACGGCCGTTATGTA 57.085 55.556 32.11 0.00 0.00 2.29
1521 9222 1.476488 AGTTTGGAAACACACCAGCAC 59.524 47.619 5.11 0.00 42.03 4.40
1536 9237 9.265938 CACACACGATTTATTATCTGAAGTTTG 57.734 33.333 0.00 0.00 0.00 2.93
1553 9254 2.301870 ACATTACTGGGACACACACGAT 59.698 45.455 0.00 0.00 0.00 3.73
1595 9300 5.892568 AGTTAAGATAGCAAGACACGGTAG 58.107 41.667 0.00 0.00 0.00 3.18
1666 9371 4.581868 AGTTACTGCTTTATTGGCCGTAA 58.418 39.130 0.00 0.00 37.16 3.18
1669 9374 3.438781 TCAAGTTACTGCTTTATTGGCCG 59.561 43.478 0.00 0.00 0.00 6.13
1698 9403 9.995003 ATTTGACCATTAGAAAATTAACAAGCA 57.005 25.926 0.00 0.00 0.00 3.91
1718 9423 9.525007 CTTCTACGTACACAACAAATATTTGAC 57.475 33.333 30.18 17.19 40.55 3.18
1732 9437 4.943142 AGACTGTAGCTTCTACGTACAC 57.057 45.455 0.00 0.00 0.00 2.90
1734 9439 7.301068 TCTTAAGACTGTAGCTTCTACGTAC 57.699 40.000 0.00 0.00 0.00 3.67
1735 9440 9.039870 GTATCTTAAGACTGTAGCTTCTACGTA 57.960 37.037 7.48 0.00 0.00 3.57
1736 9441 7.769970 AGTATCTTAAGACTGTAGCTTCTACGT 59.230 37.037 7.48 0.00 0.00 3.57
1737 9442 8.145316 AGTATCTTAAGACTGTAGCTTCTACG 57.855 38.462 7.48 0.00 0.00 3.51
1749 9454 9.212641 GGTTAACGGAAAAAGTATCTTAAGACT 57.787 33.333 7.48 0.00 0.00 3.24
1791 9496 4.755411 TCTCCATGTTTCTCATACCGAAC 58.245 43.478 0.00 0.00 34.67 3.95
1792 9497 5.359756 CATCTCCATGTTTCTCATACCGAA 58.640 41.667 0.00 0.00 34.67 4.30
1793 9498 4.740634 GCATCTCCATGTTTCTCATACCGA 60.741 45.833 0.00 0.00 34.67 4.69
1794 9499 3.496130 GCATCTCCATGTTTCTCATACCG 59.504 47.826 0.00 0.00 34.67 4.02
1795 9500 4.712476 AGCATCTCCATGTTTCTCATACC 58.288 43.478 0.00 0.00 34.67 2.73
1987 10569 5.944007 GCAGAGGAGGAAATTAACAACCTTA 59.056 40.000 0.00 0.00 32.53 2.69
2003 10585 3.008835 TCAAATCCAATGGCAGAGGAG 57.991 47.619 14.85 3.81 34.40 3.69
2030 10612 3.626222 GGCCAACCAACCTTATCCATACA 60.626 47.826 0.00 0.00 35.26 2.29
2042 11226 0.467290 TCAGGTGAAGGCCAACCAAC 60.467 55.000 20.66 11.15 39.06 3.77
2162 11352 9.116067 CCGGTTTCTCAAGAATAAATTGGTATA 57.884 33.333 0.00 0.00 33.54 1.47
2173 11363 2.237392 CTCCTCCCGGTTTCTCAAGAAT 59.763 50.000 0.00 0.00 33.54 2.40
2214 11404 8.740123 TGTAGAGTTTGTTACCATCTTTTCAA 57.260 30.769 0.00 0.00 0.00 2.69
2215 11405 8.918202 ATGTAGAGTTTGTTACCATCTTTTCA 57.082 30.769 0.00 0.00 0.00 2.69
2241 11431 3.008594 TCCCTTGAAAAATGTCGCTCCTA 59.991 43.478 0.00 0.00 0.00 2.94
2242 11432 2.162681 CCCTTGAAAAATGTCGCTCCT 58.837 47.619 0.00 0.00 0.00 3.69
2244 11434 3.004315 TGTTCCCTTGAAAAATGTCGCTC 59.996 43.478 0.00 0.00 30.79 5.03
2245 11435 2.955660 TGTTCCCTTGAAAAATGTCGCT 59.044 40.909 0.00 0.00 30.79 4.93
2246 11436 3.363341 TGTTCCCTTGAAAAATGTCGC 57.637 42.857 0.00 0.00 30.79 5.19
2247 11437 4.236935 CCATGTTCCCTTGAAAAATGTCG 58.763 43.478 0.00 0.00 30.32 4.35
2248 11438 3.996363 GCCATGTTCCCTTGAAAAATGTC 59.004 43.478 0.00 0.00 30.32 3.06
2249 11439 3.390639 TGCCATGTTCCCTTGAAAAATGT 59.609 39.130 0.00 0.00 30.32 2.71
2257 11447 1.273327 GTTTCCTGCCATGTTCCCTTG 59.727 52.381 0.00 0.00 0.00 3.61
2273 11463 2.364002 TGCTGTGCTTTTTAGGGGTTTC 59.636 45.455 0.00 0.00 0.00 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.