Multiple sequence alignment - TraesCS2D01G526100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G526100 chr2D 100.000 2610 0 0 1 2610 614736339 614733730 0.000000e+00 4820.0
1 TraesCS2D01G526100 chr2D 76.555 418 63 18 1170 1581 614804879 614804491 2.050000e-46 196.0
2 TraesCS2D01G526100 chr2D 91.150 113 9 1 1159 1271 614819551 614819440 4.500000e-33 152.0
3 TraesCS2D01G526100 chr2A 88.373 1703 119 41 457 2127 745067627 745065972 0.000000e+00 1975.0
4 TraesCS2D01G526100 chr2A 88.333 300 27 5 2273 2566 745064431 745064134 1.150000e-93 353.0
5 TraesCS2D01G526100 chr2A 91.667 168 14 0 2109 2276 745064726 745064559 1.560000e-57 233.0
6 TraesCS2D01G526100 chr2A 73.494 830 128 58 947 1725 745112391 745111603 2.020000e-56 230.0
7 TraesCS2D01G526100 chr2A 76.640 381 56 22 1165 1527 745097088 745096723 2.060000e-41 180.0
8 TraesCS2D01G526100 chr2A 94.340 53 3 0 2135 2187 745064649 745064597 5.990000e-12 82.4
9 TraesCS2D01G526100 chr2B 82.884 1075 96 50 741 1793 749044834 749043826 0.000000e+00 885.0
10 TraesCS2D01G526100 chr2B 78.458 441 60 18 1159 1595 749139122 749138713 3.330000e-64 255.0
11 TraesCS2D01G526100 chr2B 77.112 367 55 18 1165 1513 749148004 749147649 4.440000e-43 185.0
12 TraesCS2D01G526100 chr4D 87.500 264 21 5 318 571 101626525 101626786 7.060000e-76 294.0
13 TraesCS2D01G526100 chr3D 87.218 266 23 6 318 573 346865475 346865211 2.540000e-75 292.0
14 TraesCS2D01G526100 chr3A 87.170 265 21 6 318 571 41103267 41103005 3.290000e-74 289.0
15 TraesCS2D01G526100 chrUn 86.567 268 24 7 315 572 83300118 83299853 4.250000e-73 285.0
16 TraesCS2D01G526100 chr1D 85.714 266 26 5 318 573 377022784 377023047 1.190000e-68 270.0
17 TraesCS2D01G526100 chr7D 85.551 263 29 4 318 571 265002296 265002558 1.540000e-67 267.0
18 TraesCS2D01G526100 chr7D 84.962 266 29 5 317 572 358677625 358677361 2.580000e-65 259.0
19 TraesCS2D01G526100 chr5A 85.227 264 28 6 318 571 631470031 631470293 7.160000e-66 261.0
20 TraesCS2D01G526100 chr5A 85.081 248 32 4 299 545 229576233 229576476 5.580000e-62 248.0
21 TraesCS2D01G526100 chr5A 82.222 270 32 13 318 573 502031282 502031549 4.370000e-53 219.0
22 TraesCS2D01G526100 chr5A 75.735 272 47 13 318 575 638636839 638637105 4.560000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G526100 chr2D 614733730 614736339 2609 True 4820.00 4820 100.00000 1 2610 1 chr2D.!!$R1 2609
1 TraesCS2D01G526100 chr2A 745064134 745067627 3493 True 660.85 1975 90.67825 457 2566 4 chr2A.!!$R3 2109
2 TraesCS2D01G526100 chr2A 745111603 745112391 788 True 230.00 230 73.49400 947 1725 1 chr2A.!!$R2 778
3 TraesCS2D01G526100 chr2B 749043826 749044834 1008 True 885.00 885 82.88400 741 1793 1 chr2B.!!$R1 1052

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
290 291 0.034089 GCCCCAAATAGGTGTCAGCT 60.034 55.0 9.9 9.9 34.66 4.24 F
678 688 0.108138 GTCATCCACCTTGGTCTCCG 60.108 60.0 0.0 0.0 39.03 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1109 1146 0.034059 ACGAACAGTGCTAAGCTGCT 59.966 50.0 0.00 0.00 37.47 4.24 R
2354 3868 0.389426 ATTGTGACGTCTGCCCGTAC 60.389 55.0 17.92 5.03 41.98 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 5.907207 TCCAATTTGGAAACGAAATGTTCA 58.093 33.333 15.83 0.00 45.00 3.18
30 31 5.751028 TCCAATTTGGAAACGAAATGTTCAC 59.249 36.000 15.83 0.00 45.00 3.18
31 32 5.521735 CCAATTTGGAAACGAAATGTTCACA 59.478 36.000 10.03 0.00 40.96 3.58
32 33 6.410038 CAATTTGGAAACGAAATGTTCACAC 58.590 36.000 0.00 0.00 40.84 3.82
33 34 4.703645 TTGGAAACGAAATGTTCACACA 57.296 36.364 0.00 0.00 40.84 3.72
34 35 4.909696 TGGAAACGAAATGTTCACACAT 57.090 36.364 0.00 0.00 46.34 3.21
129 130 7.646446 ACAGAAAACAAAAATAAATACCGGC 57.354 32.000 0.00 0.00 0.00 6.13
130 131 7.438564 ACAGAAAACAAAAATAAATACCGGCT 58.561 30.769 0.00 0.00 0.00 5.52
131 132 8.578151 ACAGAAAACAAAAATAAATACCGGCTA 58.422 29.630 0.00 0.00 0.00 3.93
132 133 9.072294 CAGAAAACAAAAATAAATACCGGCTAG 57.928 33.333 0.00 0.00 0.00 3.42
134 135 7.706100 AAACAAAAATAAATACCGGCTAGGA 57.294 32.000 0.00 0.00 45.00 2.94
135 136 7.706100 AACAAAAATAAATACCGGCTAGGAA 57.294 32.000 0.00 0.00 45.00 3.36
136 137 7.329588 ACAAAAATAAATACCGGCTAGGAAG 57.670 36.000 0.00 0.00 45.00 3.46
147 148 1.662517 GCTAGGAAGCTTTCAGGAGC 58.337 55.000 7.68 8.90 45.85 4.70
154 155 3.346426 GCTTTCAGGAGCTTCCCAA 57.654 52.632 0.00 0.00 37.19 4.12
155 156 1.620822 GCTTTCAGGAGCTTCCCAAA 58.379 50.000 0.00 0.00 37.19 3.28
156 157 1.963515 GCTTTCAGGAGCTTCCCAAAA 59.036 47.619 0.00 0.00 37.19 2.44
157 158 2.288457 GCTTTCAGGAGCTTCCCAAAAC 60.288 50.000 0.00 0.00 37.19 2.43
158 159 1.995376 TTCAGGAGCTTCCCAAAACC 58.005 50.000 0.00 0.00 37.19 3.27
159 160 0.250727 TCAGGAGCTTCCCAAAACCG 60.251 55.000 0.00 0.00 37.19 4.44
160 161 1.074951 AGGAGCTTCCCAAAACCGG 59.925 57.895 0.00 0.00 37.19 5.28
170 171 3.081710 CCCAAAACCGGGTAAGAATCT 57.918 47.619 6.32 0.00 41.83 2.40
171 172 3.427573 CCCAAAACCGGGTAAGAATCTT 58.572 45.455 6.32 0.00 41.83 2.40
172 173 3.442625 CCCAAAACCGGGTAAGAATCTTC 59.557 47.826 6.32 0.00 41.83 2.87
173 174 4.332828 CCAAAACCGGGTAAGAATCTTCT 58.667 43.478 6.32 0.00 39.74 2.85
174 175 6.271080 CCCAAAACCGGGTAAGAATCTTCTT 61.271 44.000 6.32 9.90 42.83 2.52
175 176 5.106277 CCAAAACCGGGTAAGAATCTTCTTC 60.106 44.000 6.32 2.09 43.72 2.87
176 177 5.500546 AAACCGGGTAAGAATCTTCTTCT 57.499 39.130 6.32 0.00 43.72 2.85
177 178 4.473477 ACCGGGTAAGAATCTTCTTCTG 57.527 45.455 6.32 1.77 43.72 3.02
178 179 3.838903 ACCGGGTAAGAATCTTCTTCTGT 59.161 43.478 6.32 0.00 43.72 3.41
179 180 4.286291 ACCGGGTAAGAATCTTCTTCTGTT 59.714 41.667 6.32 0.00 43.72 3.16
180 181 4.631813 CCGGGTAAGAATCTTCTTCTGTTG 59.368 45.833 8.40 0.00 43.72 3.33
181 182 5.238583 CGGGTAAGAATCTTCTTCTGTTGT 58.761 41.667 8.40 0.00 43.72 3.32
182 183 5.120830 CGGGTAAGAATCTTCTTCTGTTGTG 59.879 44.000 8.40 0.00 43.72 3.33
183 184 5.106515 GGGTAAGAATCTTCTTCTGTTGTGC 60.107 44.000 8.40 0.00 43.72 4.57
184 185 5.106515 GGTAAGAATCTTCTTCTGTTGTGCC 60.107 44.000 8.40 0.00 43.72 5.01
185 186 3.416156 AGAATCTTCTTCTGTTGTGCCC 58.584 45.455 0.00 0.00 32.55 5.36
186 187 2.957402 ATCTTCTTCTGTTGTGCCCA 57.043 45.000 0.00 0.00 0.00 5.36
187 188 2.727123 TCTTCTTCTGTTGTGCCCAA 57.273 45.000 0.00 0.00 0.00 4.12
188 189 3.228188 TCTTCTTCTGTTGTGCCCAAT 57.772 42.857 0.00 0.00 32.11 3.16
189 190 2.886523 TCTTCTTCTGTTGTGCCCAATG 59.113 45.455 0.00 0.00 32.11 2.82
190 191 1.619654 TCTTCTGTTGTGCCCAATGG 58.380 50.000 0.00 0.00 32.11 3.16
208 209 2.720659 GGCTGGCCCATTTAGTAGC 58.279 57.895 0.00 0.00 0.00 3.58
209 210 1.166531 GGCTGGCCCATTTAGTAGCG 61.167 60.000 0.00 0.00 32.22 4.26
210 211 0.179056 GCTGGCCCATTTAGTAGCGA 60.179 55.000 0.00 0.00 0.00 4.93
211 212 1.745827 GCTGGCCCATTTAGTAGCGAA 60.746 52.381 0.00 0.00 0.00 4.70
212 213 2.213499 CTGGCCCATTTAGTAGCGAAG 58.787 52.381 0.00 0.00 0.00 3.79
213 214 1.557832 TGGCCCATTTAGTAGCGAAGT 59.442 47.619 0.00 0.00 0.00 3.01
214 215 2.767394 TGGCCCATTTAGTAGCGAAGTA 59.233 45.455 0.00 0.00 0.00 2.24
215 216 3.198200 TGGCCCATTTAGTAGCGAAGTAA 59.802 43.478 0.00 0.00 0.00 2.24
216 217 4.193865 GGCCCATTTAGTAGCGAAGTAAA 58.806 43.478 0.00 5.08 37.38 2.01
217 218 4.272748 GGCCCATTTAGTAGCGAAGTAAAG 59.727 45.833 0.00 2.46 36.62 1.85
218 219 4.272748 GCCCATTTAGTAGCGAAGTAAAGG 59.727 45.833 7.78 7.36 36.62 3.11
219 220 5.667466 CCCATTTAGTAGCGAAGTAAAGGA 58.333 41.667 12.67 0.00 37.07 3.36
220 221 5.753921 CCCATTTAGTAGCGAAGTAAAGGAG 59.246 44.000 12.67 0.64 37.07 3.69
221 222 5.753921 CCATTTAGTAGCGAAGTAAAGGAGG 59.246 44.000 12.67 8.59 37.07 4.30
222 223 4.996788 TTAGTAGCGAAGTAAAGGAGGG 57.003 45.455 0.00 0.00 0.00 4.30
223 224 3.097342 AGTAGCGAAGTAAAGGAGGGA 57.903 47.619 0.00 0.00 0.00 4.20
224 225 3.025262 AGTAGCGAAGTAAAGGAGGGAG 58.975 50.000 0.00 0.00 0.00 4.30
225 226 1.939980 AGCGAAGTAAAGGAGGGAGT 58.060 50.000 0.00 0.00 0.00 3.85
226 227 1.550976 AGCGAAGTAAAGGAGGGAGTG 59.449 52.381 0.00 0.00 0.00 3.51
227 228 1.275573 GCGAAGTAAAGGAGGGAGTGT 59.724 52.381 0.00 0.00 0.00 3.55
228 229 2.931320 GCGAAGTAAAGGAGGGAGTGTG 60.931 54.545 0.00 0.00 0.00 3.82
229 230 2.701107 GAAGTAAAGGAGGGAGTGTGC 58.299 52.381 0.00 0.00 0.00 4.57
230 231 0.608640 AGTAAAGGAGGGAGTGTGCG 59.391 55.000 0.00 0.00 0.00 5.34
231 232 1.019805 GTAAAGGAGGGAGTGTGCGC 61.020 60.000 0.00 0.00 0.00 6.09
232 233 1.192146 TAAAGGAGGGAGTGTGCGCT 61.192 55.000 9.73 0.00 0.00 5.92
233 234 2.056906 AAAGGAGGGAGTGTGCGCTT 62.057 55.000 9.73 0.00 0.00 4.68
234 235 2.032681 GGAGGGAGTGTGCGCTTT 59.967 61.111 9.73 0.00 0.00 3.51
235 236 1.600916 GGAGGGAGTGTGCGCTTTT 60.601 57.895 9.73 0.00 0.00 2.27
236 237 1.172812 GGAGGGAGTGTGCGCTTTTT 61.173 55.000 9.73 0.00 0.00 1.94
270 271 2.544480 GCCTTTAACTGGCGCTTAAG 57.456 50.000 7.64 5.49 41.03 1.85
271 272 1.132453 GCCTTTAACTGGCGCTTAAGG 59.868 52.381 7.64 7.59 41.03 2.69
272 273 1.132453 CCTTTAACTGGCGCTTAAGGC 59.868 52.381 7.64 6.03 37.64 4.35
277 278 3.936772 CTGGCGCTTAAGGCCCCAA 62.937 63.158 23.91 10.96 46.76 4.12
278 279 2.678580 GGCGCTTAAGGCCCCAAA 60.679 61.111 19.00 0.00 44.97 3.28
279 280 2.058001 GGCGCTTAAGGCCCCAAAT 61.058 57.895 19.00 0.00 44.97 2.32
280 281 0.753848 GGCGCTTAAGGCCCCAAATA 60.754 55.000 19.00 0.00 44.97 1.40
281 282 0.668535 GCGCTTAAGGCCCCAAATAG 59.331 55.000 0.00 0.00 37.74 1.73
282 283 1.318576 CGCTTAAGGCCCCAAATAGG 58.681 55.000 0.00 0.00 37.74 2.57
283 284 1.409661 CGCTTAAGGCCCCAAATAGGT 60.410 52.381 0.00 0.00 37.74 3.08
284 285 2.031870 GCTTAAGGCCCCAAATAGGTG 58.968 52.381 0.00 0.00 34.66 4.00
285 286 2.623239 GCTTAAGGCCCCAAATAGGTGT 60.623 50.000 0.00 0.00 34.66 4.16
286 287 3.288092 CTTAAGGCCCCAAATAGGTGTC 58.712 50.000 0.00 0.00 34.66 3.67
287 288 1.080638 AAGGCCCCAAATAGGTGTCA 58.919 50.000 0.00 0.00 34.66 3.58
288 289 0.625849 AGGCCCCAAATAGGTGTCAG 59.374 55.000 0.00 0.00 34.66 3.51
289 290 1.037579 GGCCCCAAATAGGTGTCAGC 61.038 60.000 0.00 0.00 34.66 4.26
290 291 0.034089 GCCCCAAATAGGTGTCAGCT 60.034 55.000 9.90 9.90 34.66 4.24
291 292 2.019156 GCCCCAAATAGGTGTCAGCTC 61.019 57.143 8.05 0.00 34.66 4.09
292 293 1.408822 CCCCAAATAGGTGTCAGCTCC 60.409 57.143 8.05 0.00 34.66 4.70
293 294 1.281867 CCCAAATAGGTGTCAGCTCCA 59.718 52.381 8.05 0.00 34.66 3.86
294 295 2.092212 CCCAAATAGGTGTCAGCTCCAT 60.092 50.000 8.05 0.00 34.66 3.41
295 296 3.136443 CCCAAATAGGTGTCAGCTCCATA 59.864 47.826 8.05 0.00 34.66 2.74
296 297 4.385199 CCCAAATAGGTGTCAGCTCCATAA 60.385 45.833 8.05 0.00 34.66 1.90
297 298 4.818546 CCAAATAGGTGTCAGCTCCATAAG 59.181 45.833 8.05 0.00 0.00 1.73
322 323 9.787435 AGCTAGCTATCTATATGTATGTACTCC 57.213 37.037 17.69 0.00 0.00 3.85
323 324 9.005777 GCTAGCTATCTATATGTATGTACTCCC 57.994 40.741 7.70 0.00 0.00 4.30
326 327 8.221944 AGCTATCTATATGTATGTACTCCCTCC 58.778 40.741 0.00 0.00 0.00 4.30
327 328 7.173562 GCTATCTATATGTATGTACTCCCTCCG 59.826 44.444 0.00 0.00 0.00 4.63
328 329 6.384342 TCTATATGTATGTACTCCCTCCGT 57.616 41.667 0.00 0.00 0.00 4.69
329 330 6.787170 TCTATATGTATGTACTCCCTCCGTT 58.213 40.000 0.00 0.00 0.00 4.44
330 331 5.979288 ATATGTATGTACTCCCTCCGTTC 57.021 43.478 0.00 0.00 0.00 3.95
331 332 3.090210 TGTATGTACTCCCTCCGTTCA 57.910 47.619 0.00 0.00 0.00 3.18
332 333 2.756760 TGTATGTACTCCCTCCGTTCAC 59.243 50.000 0.00 0.00 0.00 3.18
333 334 0.815734 ATGTACTCCCTCCGTTCACG 59.184 55.000 0.00 0.00 39.44 4.35
334 335 0.250858 TGTACTCCCTCCGTTCACGA 60.251 55.000 0.00 0.00 43.02 4.35
335 336 0.883833 GTACTCCCTCCGTTCACGAA 59.116 55.000 0.00 0.00 43.02 3.85
336 337 1.475682 GTACTCCCTCCGTTCACGAAT 59.524 52.381 0.00 0.00 43.02 3.34
337 338 1.843368 ACTCCCTCCGTTCACGAATA 58.157 50.000 0.00 0.00 43.02 1.75
338 339 2.173519 ACTCCCTCCGTTCACGAATAA 58.826 47.619 0.00 0.00 43.02 1.40
339 340 2.165845 ACTCCCTCCGTTCACGAATAAG 59.834 50.000 0.00 0.00 43.02 1.73
340 341 2.165845 CTCCCTCCGTTCACGAATAAGT 59.834 50.000 0.00 0.00 43.02 2.24
341 342 2.165030 TCCCTCCGTTCACGAATAAGTC 59.835 50.000 0.00 0.00 43.02 3.01
342 343 2.165845 CCCTCCGTTCACGAATAAGTCT 59.834 50.000 0.00 0.00 43.02 3.24
343 344 3.379372 CCCTCCGTTCACGAATAAGTCTA 59.621 47.826 0.00 0.00 43.02 2.59
344 345 4.349501 CCTCCGTTCACGAATAAGTCTAC 58.650 47.826 0.00 0.00 43.02 2.59
345 346 4.142534 CCTCCGTTCACGAATAAGTCTACA 60.143 45.833 0.00 0.00 43.02 2.74
346 347 5.450137 CCTCCGTTCACGAATAAGTCTACAT 60.450 44.000 0.00 0.00 43.02 2.29
347 348 5.575957 TCCGTTCACGAATAAGTCTACATC 58.424 41.667 0.00 0.00 43.02 3.06
348 349 5.356190 TCCGTTCACGAATAAGTCTACATCT 59.644 40.000 0.00 0.00 43.02 2.90
349 350 6.539826 TCCGTTCACGAATAAGTCTACATCTA 59.460 38.462 0.00 0.00 43.02 1.98
350 351 6.851837 CCGTTCACGAATAAGTCTACATCTAG 59.148 42.308 0.00 0.00 43.02 2.43
351 352 7.408123 CGTTCACGAATAAGTCTACATCTAGT 58.592 38.462 0.00 0.00 43.02 2.57
352 353 7.909121 CGTTCACGAATAAGTCTACATCTAGTT 59.091 37.037 0.00 0.00 43.02 2.24
353 354 9.570488 GTTCACGAATAAGTCTACATCTAGTTT 57.430 33.333 0.00 0.00 0.00 2.66
390 391 9.508642 TCAAAGGTTAAATTTTTGACCAACTTT 57.491 25.926 16.49 7.83 46.07 2.66
418 419 5.404466 AAAAAGTAGCAGCATTTATGGCA 57.596 34.783 0.00 0.00 0.00 4.92
419 420 4.376340 AAAGTAGCAGCATTTATGGCAC 57.624 40.909 0.00 0.00 0.00 5.01
420 421 3.287867 AGTAGCAGCATTTATGGCACT 57.712 42.857 0.00 0.00 0.00 4.40
421 422 4.422073 AGTAGCAGCATTTATGGCACTA 57.578 40.909 0.00 0.00 0.00 2.74
422 423 4.780815 AGTAGCAGCATTTATGGCACTAA 58.219 39.130 0.00 0.00 0.00 2.24
423 424 5.192927 AGTAGCAGCATTTATGGCACTAAA 58.807 37.500 0.00 0.00 0.00 1.85
424 425 4.376340 AGCAGCATTTATGGCACTAAAC 57.624 40.909 0.00 0.00 0.00 2.01
425 426 4.019174 AGCAGCATTTATGGCACTAAACT 58.981 39.130 0.00 0.00 0.00 2.66
426 427 5.192927 AGCAGCATTTATGGCACTAAACTA 58.807 37.500 0.00 0.00 0.00 2.24
427 428 5.297776 AGCAGCATTTATGGCACTAAACTAG 59.702 40.000 0.00 0.00 0.00 2.57
428 429 5.066505 GCAGCATTTATGGCACTAAACTAGT 59.933 40.000 0.00 0.00 40.28 2.57
429 430 6.260050 GCAGCATTTATGGCACTAAACTAGTA 59.740 38.462 0.00 0.00 37.23 1.82
430 431 7.041098 GCAGCATTTATGGCACTAAACTAGTAT 60.041 37.037 0.00 0.00 37.23 2.12
431 432 8.499162 CAGCATTTATGGCACTAAACTAGTATC 58.501 37.037 0.00 0.00 37.23 2.24
432 433 8.210946 AGCATTTATGGCACTAAACTAGTATCA 58.789 33.333 0.00 0.00 37.23 2.15
433 434 8.283291 GCATTTATGGCACTAAACTAGTATCAC 58.717 37.037 0.00 0.00 37.23 3.06
434 435 9.547753 CATTTATGGCACTAAACTAGTATCACT 57.452 33.333 0.00 0.00 37.23 3.41
548 549 7.713764 AACTTTGATTTATGACAAAAGGCAC 57.286 32.000 0.00 0.00 35.95 5.01
560 569 4.515404 AGGCACTTATTCGCGGAC 57.485 55.556 6.13 0.00 27.25 4.79
662 672 1.760875 GGGAGGTCCTATGCGGTCA 60.761 63.158 0.00 0.00 35.95 4.02
663 673 1.122019 GGGAGGTCCTATGCGGTCAT 61.122 60.000 0.00 0.00 36.73 3.06
673 683 1.852157 ATGCGGTCATCCACCTTGGT 61.852 55.000 0.00 0.00 44.21 3.67
678 688 0.108138 GTCATCCACCTTGGTCTCCG 60.108 60.000 0.00 0.00 39.03 4.63
696 706 0.804364 CGCCATTGACAAGCTGCTTA 59.196 50.000 15.51 0.00 0.00 3.09
708 718 5.128919 ACAAGCTGCTTATTGGAATAGAGG 58.871 41.667 15.51 0.32 0.00 3.69
715 725 7.308229 GCTGCTTATTGGAATAGAGGTATGTTG 60.308 40.741 0.00 0.00 0.00 3.33
717 727 8.710239 TGCTTATTGGAATAGAGGTATGTTGTA 58.290 33.333 0.00 0.00 0.00 2.41
718 728 9.726438 GCTTATTGGAATAGAGGTATGTTGTAT 57.274 33.333 0.00 0.00 0.00 2.29
730 740 8.504005 AGAGGTATGTTGTATTTTTGTTCTTCG 58.496 33.333 0.00 0.00 0.00 3.79
732 742 7.229907 AGGTATGTTGTATTTTTGTTCTTCGGT 59.770 33.333 0.00 0.00 0.00 4.69
733 743 7.863877 GGTATGTTGTATTTTTGTTCTTCGGTT 59.136 33.333 0.00 0.00 0.00 4.44
769 783 5.701290 GCATGTTTGCTAGTAGTAATAGGGG 59.299 44.000 6.76 0.00 45.77 4.79
786 801 1.490490 GGGGAATGTGCACCAGAGATA 59.510 52.381 15.69 0.00 0.00 1.98
790 805 4.202357 GGGAATGTGCACCAGAGATATGTA 60.202 45.833 15.69 0.00 0.00 2.29
799 814 5.620205 GCACCAGAGATATGTATAGTCACCG 60.620 48.000 0.00 0.00 0.00 4.94
807 822 4.761235 ATGTATAGTCACCGACCGTATG 57.239 45.455 0.00 0.00 32.18 2.39
815 832 1.406180 CACCGACCGTATGATACACCA 59.594 52.381 3.24 0.00 0.00 4.17
851 868 1.971695 GCCAGAACCCAGAAACCGG 60.972 63.158 0.00 0.00 0.00 5.28
882 899 4.152580 TGATTCTCTCGATCCGATAACTCG 59.847 45.833 0.00 0.00 44.62 4.18
919 936 7.094631 ACTATACTTTGCGTTCTGAATACACA 58.905 34.615 0.00 0.00 0.00 3.72
923 940 5.699001 ACTTTGCGTTCTGAATACACATACA 59.301 36.000 0.00 0.00 0.00 2.29
924 941 6.371548 ACTTTGCGTTCTGAATACACATACAT 59.628 34.615 0.00 0.00 0.00 2.29
926 943 4.808895 TGCGTTCTGAATACACATACATCC 59.191 41.667 0.00 0.00 0.00 3.51
927 944 4.211374 GCGTTCTGAATACACATACATCCC 59.789 45.833 0.00 0.00 0.00 3.85
928 945 5.356426 CGTTCTGAATACACATACATCCCA 58.644 41.667 0.00 0.00 0.00 4.37
929 946 5.463392 CGTTCTGAATACACATACATCCCAG 59.537 44.000 0.00 0.00 0.00 4.45
931 948 3.727726 TGAATACACATACATCCCAGCG 58.272 45.455 0.00 0.00 0.00 5.18
932 949 3.133901 TGAATACACATACATCCCAGCGT 59.866 43.478 0.00 0.00 0.00 5.07
933 950 2.595124 TACACATACATCCCAGCGTG 57.405 50.000 0.00 0.00 0.00 5.34
934 951 0.744414 ACACATACATCCCAGCGTGC 60.744 55.000 0.00 0.00 0.00 5.34
955 972 4.126390 CGCACGCGCTTGTCTGAG 62.126 66.667 15.84 0.00 35.30 3.35
1042 1061 1.393603 TGGCGATAGGACTCACTCAG 58.606 55.000 0.00 0.00 0.00 3.35
1043 1062 1.341089 TGGCGATAGGACTCACTCAGT 60.341 52.381 0.00 0.00 38.45 3.41
1108 1145 3.117171 CAGGCAGCTGCAGACGAC 61.117 66.667 37.63 20.45 44.36 4.34
1109 1146 3.619767 AGGCAGCTGCAGACGACA 61.620 61.111 37.63 0.00 44.36 4.35
1110 1147 3.117171 GGCAGCTGCAGACGACAG 61.117 66.667 37.63 0.00 44.36 3.51
1115 1152 2.048409 CTGCAGACGACAGCAGCT 60.048 61.111 17.79 0.00 46.20 4.24
1116 1153 1.667191 CTGCAGACGACAGCAGCTT 60.667 57.895 17.79 0.00 46.20 3.74
1117 1154 0.389037 CTGCAGACGACAGCAGCTTA 60.389 55.000 17.79 0.00 46.20 3.09
1118 1155 0.389037 TGCAGACGACAGCAGCTTAG 60.389 55.000 0.20 0.00 33.81 2.18
1119 1156 1.691215 GCAGACGACAGCAGCTTAGC 61.691 60.000 0.00 0.00 0.00 3.09
1120 1157 0.389037 CAGACGACAGCAGCTTAGCA 60.389 55.000 7.07 0.00 36.85 3.49
1121 1158 0.389166 AGACGACAGCAGCTTAGCAC 60.389 55.000 7.07 0.00 36.85 4.40
1122 1159 0.389166 GACGACAGCAGCTTAGCACT 60.389 55.000 7.07 0.00 36.85 4.40
1123 1160 0.668706 ACGACAGCAGCTTAGCACTG 60.669 55.000 20.59 20.59 39.66 3.66
1124 1161 0.668706 CGACAGCAGCTTAGCACTGT 60.669 55.000 25.55 25.55 45.83 3.55
1125 1162 1.517242 GACAGCAGCTTAGCACTGTT 58.483 50.000 25.85 14.54 44.19 3.16
1126 1163 1.462670 GACAGCAGCTTAGCACTGTTC 59.537 52.381 25.85 17.75 44.19 3.18
1127 1164 0.441533 CAGCAGCTTAGCACTGTTCG 59.558 55.000 15.98 0.00 37.47 3.95
1128 1165 0.034059 AGCAGCTTAGCACTGTTCGT 59.966 50.000 7.07 0.00 37.47 3.85
1162 1222 1.270907 AGCTCACTGAACTACCCAGG 58.729 55.000 0.00 0.00 36.03 4.45
1262 1327 4.789075 CGCCCCGACGACGACAAT 62.789 66.667 9.28 0.00 42.66 2.71
1273 1338 1.201910 CGACGACAATGGTACGTACGA 60.202 52.381 24.41 16.09 40.29 3.43
1279 1344 2.924922 AATGGTACGTACGAGCGCCG 62.925 60.000 24.41 15.25 45.44 6.46
1293 1369 1.205064 CGCCGCTCTGAAAACAGTG 59.795 57.895 0.00 0.00 0.00 3.66
1312 1388 3.443329 AGTGTTGTTCATGTTGCAGTCAA 59.557 39.130 0.00 0.00 0.00 3.18
1327 1403 7.744087 TTGCAGTCAACATTATCTTGTAGTT 57.256 32.000 0.00 0.00 0.00 2.24
1328 1404 7.132694 TGCAGTCAACATTATCTTGTAGTTG 57.867 36.000 0.00 0.00 40.53 3.16
1329 1405 6.024049 GCAGTCAACATTATCTTGTAGTTGC 58.976 40.000 0.00 0.00 39.39 4.17
1330 1406 6.128172 GCAGTCAACATTATCTTGTAGTTGCT 60.128 38.462 0.00 0.00 39.39 3.91
1331 1407 7.459486 CAGTCAACATTATCTTGTAGTTGCTC 58.541 38.462 0.00 0.00 39.39 4.26
1332 1408 7.118245 CAGTCAACATTATCTTGTAGTTGCTCA 59.882 37.037 0.00 0.00 39.39 4.26
1333 1409 7.661437 AGTCAACATTATCTTGTAGTTGCTCAA 59.339 33.333 0.00 0.00 39.39 3.02
1415 1492 3.645884 CAAGTTGGCATTTGTGGAGAAG 58.354 45.455 0.00 0.00 0.00 2.85
1552 1641 1.153249 ACGTGGATAATGGCCGTGG 60.153 57.895 0.00 0.00 0.00 4.94
1588 1693 3.680620 GATGGTGTGCCGCCTGCTA 62.681 63.158 6.38 0.00 42.00 3.49
1598 1703 4.208632 GCCTGCTAGCGTGTTCAT 57.791 55.556 10.77 0.00 0.00 2.57
1621 1726 9.109393 TCATAACTTCAGATAATAAACTGGTGC 57.891 33.333 0.00 0.00 35.20 5.01
1623 1728 4.332819 ACTTCAGATAATAAACTGGTGCGC 59.667 41.667 0.00 0.00 35.20 6.09
1680 1790 3.002348 GTCCTTTCTACTGTGTGTGTTGC 59.998 47.826 0.00 0.00 0.00 4.17
1725 1835 3.011119 GTGGGTGTTGTTCTGTTGTGTA 58.989 45.455 0.00 0.00 0.00 2.90
1777 1895 3.660501 TGCGAGTCTGTTGAGTGTAAT 57.339 42.857 0.00 0.00 0.00 1.89
1853 1971 2.281517 TCAAGTGTTCGCTTTTCCGAA 58.718 42.857 0.00 0.00 44.09 4.30
1880 1998 4.695455 TGTCGGATTGATTCCTTTTCTGTC 59.305 41.667 0.00 0.00 42.99 3.51
1914 2032 1.464997 GGTGAAGAAACACGGATGCTC 59.535 52.381 0.00 0.00 41.12 4.26
1919 2037 4.451096 TGAAGAAACACGGATGCTCTAAAC 59.549 41.667 0.00 0.00 0.00 2.01
1926 2044 4.081087 ACACGGATGCTCTAAACACCTAAT 60.081 41.667 0.00 0.00 0.00 1.73
1934 2052 5.012664 TGCTCTAAACACCTAATGGACTGAA 59.987 40.000 0.00 0.00 37.04 3.02
1945 2063 6.015434 ACCTAATGGACTGAAAAACAATGGTC 60.015 38.462 0.00 0.00 37.04 4.02
1983 2101 2.955660 TGGCGTTCATCTTTCTTTTGGT 59.044 40.909 0.00 0.00 0.00 3.67
2019 2137 7.945664 TCAAACCCCTTTATTAGCTTTCAGTAA 59.054 33.333 0.00 0.00 0.00 2.24
2049 2167 5.064962 GCATCATCTATTAGAAGAGGCATGC 59.935 44.000 23.19 9.90 45.47 4.06
2054 2172 7.890655 TCATCTATTAGAAGAGGCATGCTACTA 59.109 37.037 18.92 10.87 0.00 1.82
2065 2183 0.756903 ATGCTACTATCGGGCGGTTT 59.243 50.000 0.00 0.00 0.00 3.27
2136 3518 2.029844 GTCTTCACGAGGGCAGTGC 61.030 63.158 6.55 6.55 39.31 4.40
2160 3542 3.837213 ATGGAGAAATGCACAAACTCG 57.163 42.857 0.00 0.00 0.00 4.18
2161 3543 1.266718 TGGAGAAATGCACAAACTCGC 59.733 47.619 0.00 0.00 0.00 5.03
2198 3580 0.820226 TCGTCCTGCTCAATGGAGAG 59.180 55.000 0.00 0.00 44.26 3.20
2214 3596 0.038251 AGAGATGCACAAACTCGCGA 60.038 50.000 9.26 9.26 36.03 5.87
2216 3598 1.225475 GATGCACAAACTCGCGACG 60.225 57.895 3.71 4.12 0.00 5.12
2220 3602 1.204062 CACAAACTCGCGACGCAAT 59.796 52.632 21.35 0.58 0.00 3.56
2235 3617 3.248266 ACGCAATTACTAACAGTCGTCC 58.752 45.455 0.00 0.00 0.00 4.79
2251 3633 4.183686 CCTGAAATGCAGCCGCCG 62.184 66.667 0.00 0.00 43.50 6.46
2266 3648 3.869272 CCGCATGGCAGAACGCTC 61.869 66.667 0.00 0.00 41.91 5.03
2280 3793 5.051374 GCAGAACGCTCACTCATTTATAGTC 60.051 44.000 0.00 0.00 37.77 2.59
2299 3812 4.451900 AGTCAGAAAGTCGAAACAACCAT 58.548 39.130 0.00 0.00 0.00 3.55
2306 3819 7.693951 CAGAAAGTCGAAACAACCATCATATTC 59.306 37.037 0.00 0.00 0.00 1.75
2354 3868 6.533730 TCCAATGGGTTGTAGCTATGATAAG 58.466 40.000 0.00 0.00 33.36 1.73
2384 3898 5.164233 CAGACGTCACAATATTCAGACTGT 58.836 41.667 19.50 11.61 0.00 3.55
2406 3920 5.360714 TGTCATTGAGAAGAAAAAGGCAGTT 59.639 36.000 0.00 0.00 0.00 3.16
2466 3984 9.543231 AATACTCCCTCCGTCTCATAATATAAA 57.457 33.333 0.00 0.00 0.00 1.40
2467 3985 9.716556 ATACTCCCTCCGTCTCATAATATAAAT 57.283 33.333 0.00 0.00 0.00 1.40
2469 3987 8.881262 ACTCCCTCCGTCTCATAATATAAATTT 58.119 33.333 0.00 0.00 0.00 1.82
2508 4026 7.406799 ACATAGCTTGCAAAAACATTTACAC 57.593 32.000 0.00 0.00 0.00 2.90
2524 4042 0.465824 ACACGATAGGACGGAGGGAG 60.466 60.000 0.00 0.00 43.77 4.30
2538 4056 3.577415 CGGAGGGAGTAGTTATAAAGGGG 59.423 52.174 0.00 0.00 0.00 4.79
2544 4062 4.444449 GGAGTAGTTATAAAGGGGCAGTGG 60.444 50.000 0.00 0.00 0.00 4.00
2547 4065 2.024414 GTTATAAAGGGGCAGTGGCTG 58.976 52.381 17.16 0.00 40.87 4.85
2562 4080 2.611292 GTGGCTGCTTGCTAAGATGTAG 59.389 50.000 0.00 0.00 42.39 2.74
2566 4084 4.125703 GCTGCTTGCTAAGATGTAGTCAT 58.874 43.478 0.00 0.00 38.95 3.06
2567 4085 4.025061 GCTGCTTGCTAAGATGTAGTCATG 60.025 45.833 0.00 0.00 38.95 3.07
2568 4086 5.343307 TGCTTGCTAAGATGTAGTCATGA 57.657 39.130 0.00 0.00 34.06 3.07
2569 4087 5.733676 TGCTTGCTAAGATGTAGTCATGAA 58.266 37.500 0.00 0.00 34.06 2.57
2570 4088 5.814188 TGCTTGCTAAGATGTAGTCATGAAG 59.186 40.000 0.00 0.00 34.06 3.02
2571 4089 6.045318 GCTTGCTAAGATGTAGTCATGAAGA 58.955 40.000 0.00 0.00 34.06 2.87
2572 4090 6.200665 GCTTGCTAAGATGTAGTCATGAAGAG 59.799 42.308 0.00 0.00 34.06 2.85
2573 4091 7.410120 TTGCTAAGATGTAGTCATGAAGAGA 57.590 36.000 0.00 0.00 34.06 3.10
2574 4092 7.594351 TGCTAAGATGTAGTCATGAAGAGAT 57.406 36.000 0.00 0.00 34.06 2.75
2575 4093 7.656412 TGCTAAGATGTAGTCATGAAGAGATC 58.344 38.462 0.00 2.03 34.06 2.75
2576 4094 7.286316 TGCTAAGATGTAGTCATGAAGAGATCA 59.714 37.037 14.26 3.51 43.67 2.92
2577 4095 7.809331 GCTAAGATGTAGTCATGAAGAGATCAG 59.191 40.741 14.26 7.59 42.53 2.90
2578 4096 7.658525 AAGATGTAGTCATGAAGAGATCAGT 57.341 36.000 14.26 3.34 42.53 3.41
2579 4097 7.041635 AGATGTAGTCATGAAGAGATCAGTG 57.958 40.000 14.26 0.00 42.53 3.66
2580 4098 6.832900 AGATGTAGTCATGAAGAGATCAGTGA 59.167 38.462 14.26 0.00 42.53 3.41
2581 4099 7.506599 AGATGTAGTCATGAAGAGATCAGTGAT 59.493 37.037 4.98 4.98 42.53 3.06
2582 4100 7.036996 TGTAGTCATGAAGAGATCAGTGATC 57.963 40.000 23.20 23.20 42.53 2.92
2583 4101 5.534207 AGTCATGAAGAGATCAGTGATCC 57.466 43.478 26.14 18.22 42.53 3.36
2584 4102 4.961099 AGTCATGAAGAGATCAGTGATCCA 59.039 41.667 26.14 18.06 42.53 3.41
2585 4103 5.424573 AGTCATGAAGAGATCAGTGATCCAA 59.575 40.000 26.14 10.50 42.53 3.53
2586 4104 6.099990 AGTCATGAAGAGATCAGTGATCCAAT 59.900 38.462 26.14 14.18 42.53 3.16
2587 4105 6.203145 GTCATGAAGAGATCAGTGATCCAATG 59.797 42.308 26.14 20.66 42.53 2.82
2588 4106 5.688814 TGAAGAGATCAGTGATCCAATGT 57.311 39.130 26.14 10.18 39.66 2.71
2589 4107 6.058553 TGAAGAGATCAGTGATCCAATGTT 57.941 37.500 26.14 14.51 39.66 2.71
2590 4108 7.186570 TGAAGAGATCAGTGATCCAATGTTA 57.813 36.000 26.14 7.54 39.66 2.41
2591 4109 7.044181 TGAAGAGATCAGTGATCCAATGTTAC 58.956 38.462 26.14 12.12 39.66 2.50
2592 4110 6.550938 AGAGATCAGTGATCCAATGTTACA 57.449 37.500 26.14 0.00 39.66 2.41
2593 4111 6.950842 AGAGATCAGTGATCCAATGTTACAA 58.049 36.000 26.14 0.00 39.66 2.41
2594 4112 6.820656 AGAGATCAGTGATCCAATGTTACAAC 59.179 38.462 26.14 0.95 39.66 3.32
2595 4113 6.475504 AGATCAGTGATCCAATGTTACAACA 58.524 36.000 26.14 0.00 39.66 3.33
2596 4114 6.942005 AGATCAGTGATCCAATGTTACAACAA 59.058 34.615 26.14 0.00 39.88 2.83
2597 4115 6.951062 TCAGTGATCCAATGTTACAACAAA 57.049 33.333 0.00 0.00 43.03 2.83
2598 4116 6.969366 TCAGTGATCCAATGTTACAACAAAG 58.031 36.000 0.00 0.00 43.03 2.77
2599 4117 6.016360 TCAGTGATCCAATGTTACAACAAAGG 60.016 38.462 0.00 4.63 43.03 3.11
2600 4118 6.016360 CAGTGATCCAATGTTACAACAAAGGA 60.016 38.462 16.42 16.42 44.50 3.36
2601 4119 6.549364 AGTGATCCAATGTTACAACAAAGGAA 59.451 34.615 17.44 5.31 43.99 3.36
2602 4120 7.069331 AGTGATCCAATGTTACAACAAAGGAAA 59.931 33.333 17.44 9.96 43.99 3.13
2603 4121 7.169140 GTGATCCAATGTTACAACAAAGGAAAC 59.831 37.037 17.44 15.20 43.99 2.78
2604 4122 6.783708 TCCAATGTTACAACAAAGGAAACT 57.216 33.333 13.39 0.00 43.03 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 5.751028 GTGAACATTTCGTTTCCAAATTGGA 59.249 36.000 11.23 11.23 46.61 3.53
7 8 5.521735 TGTGAACATTTCGTTTCCAAATTGG 59.478 36.000 5.48 5.48 38.19 3.16
8 9 6.035435 TGTGTGAACATTTCGTTTCCAAATTG 59.965 34.615 0.00 0.00 38.19 2.32
9 10 6.102663 TGTGTGAACATTTCGTTTCCAAATT 58.897 32.000 0.00 0.00 38.19 1.82
10 11 5.655488 TGTGTGAACATTTCGTTTCCAAAT 58.345 33.333 0.00 0.00 38.19 2.32
11 12 5.060662 TGTGTGAACATTTCGTTTCCAAA 57.939 34.783 0.00 0.00 38.19 3.28
12 13 4.703645 TGTGTGAACATTTCGTTTCCAA 57.296 36.364 0.00 0.00 38.19 3.53
13 14 4.909696 ATGTGTGAACATTTCGTTTCCA 57.090 36.364 0.00 0.00 38.19 3.53
14 15 5.746245 TCAAATGTGTGAACATTTCGTTTCC 59.254 36.000 12.61 0.00 45.34 3.13
15 16 6.804534 TCAAATGTGTGAACATTTCGTTTC 57.195 33.333 12.61 0.00 45.34 2.78
16 17 7.588143 TTTCAAATGTGTGAACATTTCGTTT 57.412 28.000 12.61 0.00 45.34 3.60
17 18 7.588143 TTTTCAAATGTGTGAACATTTCGTT 57.412 28.000 12.61 0.00 45.34 3.85
18 19 7.588143 TTTTTCAAATGTGTGAACATTTCGT 57.412 28.000 12.61 0.00 45.34 3.85
103 104 8.552865 GCCGGTATTTATTTTTGTTTTCTGTTT 58.447 29.630 1.90 0.00 0.00 2.83
104 105 7.929245 AGCCGGTATTTATTTTTGTTTTCTGTT 59.071 29.630 1.90 0.00 0.00 3.16
105 106 7.438564 AGCCGGTATTTATTTTTGTTTTCTGT 58.561 30.769 1.90 0.00 0.00 3.41
106 107 7.883229 AGCCGGTATTTATTTTTGTTTTCTG 57.117 32.000 1.90 0.00 0.00 3.02
107 108 8.248253 CCTAGCCGGTATTTATTTTTGTTTTCT 58.752 33.333 1.90 0.00 0.00 2.52
108 109 8.245491 TCCTAGCCGGTATTTATTTTTGTTTTC 58.755 33.333 1.90 0.00 0.00 2.29
109 110 8.124808 TCCTAGCCGGTATTTATTTTTGTTTT 57.875 30.769 1.90 0.00 0.00 2.43
110 111 7.706100 TCCTAGCCGGTATTTATTTTTGTTT 57.294 32.000 1.90 0.00 0.00 2.83
111 112 7.629866 GCTTCCTAGCCGGTATTTATTTTTGTT 60.630 37.037 1.90 0.00 41.74 2.83
112 113 6.183360 GCTTCCTAGCCGGTATTTATTTTTGT 60.183 38.462 1.90 0.00 41.74 2.83
113 114 6.206498 GCTTCCTAGCCGGTATTTATTTTTG 58.794 40.000 1.90 0.00 41.74 2.44
114 115 6.387041 GCTTCCTAGCCGGTATTTATTTTT 57.613 37.500 1.90 0.00 41.74 1.94
136 137 1.620822 TTTGGGAAGCTCCTGAAAGC 58.379 50.000 0.00 0.00 42.82 3.51
137 138 2.297315 GGTTTTGGGAAGCTCCTGAAAG 59.703 50.000 0.00 0.00 36.57 2.62
138 139 2.316108 GGTTTTGGGAAGCTCCTGAAA 58.684 47.619 0.00 0.00 36.57 2.69
139 140 1.817740 CGGTTTTGGGAAGCTCCTGAA 60.818 52.381 0.00 0.00 36.57 3.02
140 141 0.250727 CGGTTTTGGGAAGCTCCTGA 60.251 55.000 0.00 0.00 36.57 3.86
141 142 1.244019 CCGGTTTTGGGAAGCTCCTG 61.244 60.000 0.00 0.00 36.57 3.86
142 143 1.074951 CCGGTTTTGGGAAGCTCCT 59.925 57.895 0.00 0.00 36.57 3.69
143 144 3.681473 CCGGTTTTGGGAAGCTCC 58.319 61.111 0.00 0.00 35.23 4.70
148 149 8.395374 AGAAGATTCTTACCCGGTTTTGGGAA 62.395 42.308 5.69 0.00 42.91 3.97
149 150 6.992540 AGAAGATTCTTACCCGGTTTTGGGA 61.993 44.000 5.69 0.00 42.91 4.37
150 151 4.809691 AGAAGATTCTTACCCGGTTTTGGG 60.810 45.833 0.00 0.00 44.71 4.12
151 152 4.332828 AGAAGATTCTTACCCGGTTTTGG 58.667 43.478 0.00 0.00 32.55 3.28
152 153 5.705905 AGAAGAAGATTCTTACCCGGTTTTG 59.294 40.000 7.78 0.00 46.84 2.44
153 154 5.705905 CAGAAGAAGATTCTTACCCGGTTTT 59.294 40.000 7.78 0.00 46.84 2.43
154 155 5.221864 ACAGAAGAAGATTCTTACCCGGTTT 60.222 40.000 7.78 0.00 46.84 3.27
155 156 4.286291 ACAGAAGAAGATTCTTACCCGGTT 59.714 41.667 7.78 0.00 46.84 4.44
156 157 3.838903 ACAGAAGAAGATTCTTACCCGGT 59.161 43.478 7.78 0.00 46.84 5.28
157 158 4.473477 ACAGAAGAAGATTCTTACCCGG 57.527 45.455 7.78 0.00 46.84 5.73
158 159 5.120830 CACAACAGAAGAAGATTCTTACCCG 59.879 44.000 7.78 0.81 46.84 5.28
159 160 5.106515 GCACAACAGAAGAAGATTCTTACCC 60.107 44.000 7.78 0.00 46.84 3.69
160 161 5.106515 GGCACAACAGAAGAAGATTCTTACC 60.107 44.000 7.78 0.00 46.84 2.85
161 162 5.106515 GGGCACAACAGAAGAAGATTCTTAC 60.107 44.000 7.78 3.05 46.84 2.34
162 163 5.003804 GGGCACAACAGAAGAAGATTCTTA 58.996 41.667 7.78 0.00 46.84 2.10
163 164 7.423776 ATTGGGCACAACAGAAGAAGATTCTT 61.424 38.462 1.86 7.53 43.84 2.52
164 165 3.181440 TGGGCACAACAGAAGAAGATTCT 60.181 43.478 0.00 0.00 39.74 2.40
165 166 3.149196 TGGGCACAACAGAAGAAGATTC 58.851 45.455 0.00 0.00 0.00 2.52
166 167 3.228188 TGGGCACAACAGAAGAAGATT 57.772 42.857 0.00 0.00 0.00 2.40
167 168 2.957402 TGGGCACAACAGAAGAAGAT 57.043 45.000 0.00 0.00 0.00 2.40
168 169 2.727123 TTGGGCACAACAGAAGAAGA 57.273 45.000 0.00 0.00 0.00 2.87
169 170 2.029649 CCATTGGGCACAACAGAAGAAG 60.030 50.000 1.86 0.00 39.87 2.85
170 171 1.962807 CCATTGGGCACAACAGAAGAA 59.037 47.619 1.86 0.00 39.87 2.52
171 172 1.619654 CCATTGGGCACAACAGAAGA 58.380 50.000 1.86 0.00 39.87 2.87
172 173 0.604578 CCCATTGGGCACAACAGAAG 59.395 55.000 9.28 0.00 39.87 2.85
173 174 2.744062 CCCATTGGGCACAACAGAA 58.256 52.632 9.28 0.00 39.87 3.02
174 175 4.517663 CCCATTGGGCACAACAGA 57.482 55.556 9.28 0.00 39.87 3.41
190 191 1.166531 CGCTACTAAATGGGCCAGCC 61.167 60.000 13.78 0.00 0.00 4.85
191 192 0.179056 TCGCTACTAAATGGGCCAGC 60.179 55.000 13.78 7.02 0.00 4.85
192 193 2.213499 CTTCGCTACTAAATGGGCCAG 58.787 52.381 13.78 0.00 0.00 4.85
193 194 1.557832 ACTTCGCTACTAAATGGGCCA 59.442 47.619 9.61 9.61 0.00 5.36
194 195 2.327200 ACTTCGCTACTAAATGGGCC 57.673 50.000 0.00 0.00 0.00 5.80
195 196 4.272748 CCTTTACTTCGCTACTAAATGGGC 59.727 45.833 0.00 0.00 0.00 5.36
196 197 5.667466 TCCTTTACTTCGCTACTAAATGGG 58.333 41.667 0.00 0.00 0.00 4.00
197 198 5.753921 CCTCCTTTACTTCGCTACTAAATGG 59.246 44.000 0.00 0.00 0.00 3.16
198 199 5.753921 CCCTCCTTTACTTCGCTACTAAATG 59.246 44.000 0.00 0.00 0.00 2.32
199 200 5.659971 TCCCTCCTTTACTTCGCTACTAAAT 59.340 40.000 0.00 0.00 0.00 1.40
200 201 5.018809 TCCCTCCTTTACTTCGCTACTAAA 58.981 41.667 0.00 0.00 0.00 1.85
201 202 4.603131 TCCCTCCTTTACTTCGCTACTAA 58.397 43.478 0.00 0.00 0.00 2.24
202 203 4.205587 CTCCCTCCTTTACTTCGCTACTA 58.794 47.826 0.00 0.00 0.00 1.82
203 204 3.025262 CTCCCTCCTTTACTTCGCTACT 58.975 50.000 0.00 0.00 0.00 2.57
204 205 2.759535 ACTCCCTCCTTTACTTCGCTAC 59.240 50.000 0.00 0.00 0.00 3.58
205 206 2.758979 CACTCCCTCCTTTACTTCGCTA 59.241 50.000 0.00 0.00 0.00 4.26
206 207 1.550976 CACTCCCTCCTTTACTTCGCT 59.449 52.381 0.00 0.00 0.00 4.93
207 208 1.275573 ACACTCCCTCCTTTACTTCGC 59.724 52.381 0.00 0.00 0.00 4.70
208 209 2.931320 GCACACTCCCTCCTTTACTTCG 60.931 54.545 0.00 0.00 0.00 3.79
209 210 2.701107 GCACACTCCCTCCTTTACTTC 58.299 52.381 0.00 0.00 0.00 3.01
210 211 1.002087 CGCACACTCCCTCCTTTACTT 59.998 52.381 0.00 0.00 0.00 2.24
211 212 0.608640 CGCACACTCCCTCCTTTACT 59.391 55.000 0.00 0.00 0.00 2.24
212 213 1.019805 GCGCACACTCCCTCCTTTAC 61.020 60.000 0.30 0.00 0.00 2.01
213 214 1.192146 AGCGCACACTCCCTCCTTTA 61.192 55.000 11.47 0.00 0.00 1.85
214 215 2.032681 GCGCACACTCCCTCCTTT 59.967 61.111 0.30 0.00 0.00 3.11
215 216 2.056906 AAAGCGCACACTCCCTCCTT 62.057 55.000 11.47 0.00 0.00 3.36
216 217 2.056906 AAAAGCGCACACTCCCTCCT 62.057 55.000 11.47 0.00 0.00 3.69
217 218 1.172812 AAAAAGCGCACACTCCCTCC 61.173 55.000 11.47 0.00 0.00 4.30
218 219 2.331265 AAAAAGCGCACACTCCCTC 58.669 52.632 11.47 0.00 0.00 4.30
219 220 4.579127 AAAAAGCGCACACTCCCT 57.421 50.000 11.47 0.00 0.00 4.20
252 253 1.132453 GCCTTAAGCGCCAGTTAAAGG 59.868 52.381 2.29 9.56 0.00 3.11
253 254 1.132453 GGCCTTAAGCGCCAGTTAAAG 59.868 52.381 22.72 0.00 46.27 1.85
254 255 1.170442 GGCCTTAAGCGCCAGTTAAA 58.830 50.000 22.72 0.00 46.27 1.52
255 256 2.862738 GGCCTTAAGCGCCAGTTAA 58.137 52.632 22.72 1.51 46.27 2.01
256 257 4.629779 GGCCTTAAGCGCCAGTTA 57.370 55.556 22.72 0.00 46.27 2.24
263 264 1.318576 CCTATTTGGGGCCTTAAGCG 58.681 55.000 0.84 0.00 45.17 4.68
264 265 2.031870 CACCTATTTGGGGCCTTAAGC 58.968 52.381 0.84 0.00 41.11 3.09
265 266 3.288092 GACACCTATTTGGGGCCTTAAG 58.712 50.000 0.84 0.00 45.20 1.85
266 267 2.650322 TGACACCTATTTGGGGCCTTAA 59.350 45.455 0.84 0.00 45.20 1.85
267 268 2.241176 CTGACACCTATTTGGGGCCTTA 59.759 50.000 0.84 0.00 45.20 2.69
268 269 1.005924 CTGACACCTATTTGGGGCCTT 59.994 52.381 0.84 0.00 45.20 4.35
269 270 0.625849 CTGACACCTATTTGGGGCCT 59.374 55.000 0.84 0.00 45.20 5.19
270 271 1.037579 GCTGACACCTATTTGGGGCC 61.038 60.000 0.00 0.00 45.20 5.80
271 272 0.034089 AGCTGACACCTATTTGGGGC 60.034 55.000 0.00 0.00 45.20 5.80
273 274 1.281867 TGGAGCTGACACCTATTTGGG 59.718 52.381 0.00 0.00 41.11 4.12
274 275 2.787473 TGGAGCTGACACCTATTTGG 57.213 50.000 0.00 0.00 42.93 3.28
275 276 5.998454 CTTATGGAGCTGACACCTATTTG 57.002 43.478 0.00 0.00 0.00 2.32
296 297 9.787435 GGAGTACATACATATAGATAGCTAGCT 57.213 37.037 23.12 23.12 0.00 3.32
297 298 9.005777 GGGAGTACATACATATAGATAGCTAGC 57.994 40.741 6.62 6.62 0.00 3.42
300 301 8.221944 GGAGGGAGTACATACATATAGATAGCT 58.778 40.741 0.00 0.00 0.00 3.32
301 302 7.173562 CGGAGGGAGTACATACATATAGATAGC 59.826 44.444 0.00 0.00 0.00 2.97
302 303 8.212312 ACGGAGGGAGTACATACATATAGATAG 58.788 40.741 0.00 0.00 0.00 2.08
303 304 8.098963 ACGGAGGGAGTACATACATATAGATA 57.901 38.462 0.00 0.00 0.00 1.98
304 305 6.971340 ACGGAGGGAGTACATACATATAGAT 58.029 40.000 0.00 0.00 0.00 1.98
305 306 6.384342 ACGGAGGGAGTACATACATATAGA 57.616 41.667 0.00 0.00 0.00 1.98
306 307 6.657966 TGAACGGAGGGAGTACATACATATAG 59.342 42.308 0.00 0.00 0.00 1.31
307 308 6.432162 GTGAACGGAGGGAGTACATACATATA 59.568 42.308 0.00 0.00 0.00 0.86
308 309 5.243283 GTGAACGGAGGGAGTACATACATAT 59.757 44.000 0.00 0.00 0.00 1.78
309 310 4.581824 GTGAACGGAGGGAGTACATACATA 59.418 45.833 0.00 0.00 0.00 2.29
310 311 3.383825 GTGAACGGAGGGAGTACATACAT 59.616 47.826 0.00 0.00 0.00 2.29
311 312 2.756760 GTGAACGGAGGGAGTACATACA 59.243 50.000 0.00 0.00 0.00 2.29
312 313 2.223433 CGTGAACGGAGGGAGTACATAC 60.223 54.545 0.00 0.00 35.37 2.39
313 314 2.019249 CGTGAACGGAGGGAGTACATA 58.981 52.381 0.00 0.00 35.37 2.29
314 315 0.815734 CGTGAACGGAGGGAGTACAT 59.184 55.000 0.00 0.00 35.37 2.29
315 316 0.250858 TCGTGAACGGAGGGAGTACA 60.251 55.000 2.59 0.00 40.29 2.90
316 317 0.883833 TTCGTGAACGGAGGGAGTAC 59.116 55.000 2.59 0.00 40.29 2.73
317 318 1.843368 ATTCGTGAACGGAGGGAGTA 58.157 50.000 2.59 0.00 40.29 2.59
318 319 1.843368 TATTCGTGAACGGAGGGAGT 58.157 50.000 2.59 0.00 40.29 3.85
319 320 2.165845 ACTTATTCGTGAACGGAGGGAG 59.834 50.000 2.59 0.00 40.29 4.30
320 321 2.165030 GACTTATTCGTGAACGGAGGGA 59.835 50.000 2.59 0.00 40.29 4.20
321 322 2.165845 AGACTTATTCGTGAACGGAGGG 59.834 50.000 2.59 0.00 40.29 4.30
322 323 3.505464 AGACTTATTCGTGAACGGAGG 57.495 47.619 2.59 0.00 40.29 4.30
323 324 4.978186 TGTAGACTTATTCGTGAACGGAG 58.022 43.478 2.59 0.00 40.29 4.63
324 325 5.356190 AGATGTAGACTTATTCGTGAACGGA 59.644 40.000 2.59 0.00 40.29 4.69
325 326 5.579718 AGATGTAGACTTATTCGTGAACGG 58.420 41.667 2.59 0.00 40.29 4.44
326 327 7.408123 ACTAGATGTAGACTTATTCGTGAACG 58.592 38.462 3.49 0.00 41.45 3.95
327 328 9.570488 AAACTAGATGTAGACTTATTCGTGAAC 57.430 33.333 3.49 0.00 0.00 3.18
364 365 9.508642 AAAGTTGGTCAAAAATTTAACCTTTGA 57.491 25.926 14.78 8.04 36.87 2.69
396 397 5.047092 AGTGCCATAAATGCTGCTACTTTTT 60.047 36.000 0.00 0.00 0.00 1.94
397 398 4.463891 AGTGCCATAAATGCTGCTACTTTT 59.536 37.500 0.00 0.00 0.00 2.27
398 399 4.019174 AGTGCCATAAATGCTGCTACTTT 58.981 39.130 0.00 1.23 0.00 2.66
399 400 3.624777 AGTGCCATAAATGCTGCTACTT 58.375 40.909 0.00 0.00 0.00 2.24
400 401 3.287867 AGTGCCATAAATGCTGCTACT 57.712 42.857 0.00 0.00 0.00 2.57
401 402 5.066505 AGTTTAGTGCCATAAATGCTGCTAC 59.933 40.000 0.00 0.00 0.00 3.58
402 403 5.192927 AGTTTAGTGCCATAAATGCTGCTA 58.807 37.500 0.00 0.00 0.00 3.49
403 404 4.019174 AGTTTAGTGCCATAAATGCTGCT 58.981 39.130 0.00 0.00 0.00 4.24
404 405 4.376340 AGTTTAGTGCCATAAATGCTGC 57.624 40.909 0.00 0.00 0.00 5.25
405 406 6.683974 ACTAGTTTAGTGCCATAAATGCTG 57.316 37.500 0.00 0.00 37.69 4.41
406 407 8.210946 TGATACTAGTTTAGTGCCATAAATGCT 58.789 33.333 0.00 0.00 39.81 3.79
407 408 8.283291 GTGATACTAGTTTAGTGCCATAAATGC 58.717 37.037 0.00 0.00 39.81 3.56
408 409 9.547753 AGTGATACTAGTTTAGTGCCATAAATG 57.452 33.333 0.00 0.00 39.81 2.32
411 412 9.636789 TCTAGTGATACTAGTTTAGTGCCATAA 57.363 33.333 13.86 0.00 46.31 1.90
412 413 9.809395 ATCTAGTGATACTAGTTTAGTGCCATA 57.191 33.333 13.86 0.00 46.31 2.74
413 414 8.713708 ATCTAGTGATACTAGTTTAGTGCCAT 57.286 34.615 13.86 0.00 46.31 4.40
414 415 8.534954 AATCTAGTGATACTAGTTTAGTGCCA 57.465 34.615 13.86 0.00 46.31 4.92
415 416 9.250624 CAAATCTAGTGATACTAGTTTAGTGCC 57.749 37.037 13.86 0.00 46.31 5.01
416 417 9.804758 ACAAATCTAGTGATACTAGTTTAGTGC 57.195 33.333 13.86 0.00 46.31 4.40
532 533 6.090129 GCGAATAAGTGCCTTTTGTCATAAA 58.910 36.000 0.00 0.00 0.00 1.40
544 545 1.517694 TCGTCCGCGAATAAGTGCC 60.518 57.895 8.23 0.00 44.92 5.01
545 546 4.082192 TCGTCCGCGAATAAGTGC 57.918 55.556 8.23 0.00 44.92 4.40
557 566 3.329929 AAACATGTACTCCCTTCGTCC 57.670 47.619 0.00 0.00 0.00 4.79
599 608 8.735315 CGAGATGACCAAGTATCACTATATTCT 58.265 37.037 0.00 0.00 0.00 2.40
600 609 8.516234 ACGAGATGACCAAGTATCACTATATTC 58.484 37.037 0.00 0.00 0.00 1.75
639 649 1.133792 CCGCATAGGACCTCCCAAAAT 60.134 52.381 0.00 0.00 45.00 1.82
662 672 2.670148 GGCGGAGACCAAGGTGGAT 61.670 63.158 0.18 0.00 40.96 3.41
663 673 3.319198 GGCGGAGACCAAGGTGGA 61.319 66.667 0.18 0.00 40.96 4.02
673 683 0.674581 CAGCTTGTCAATGGCGGAGA 60.675 55.000 0.00 0.00 0.00 3.71
678 688 3.184541 CAATAAGCAGCTTGTCAATGGC 58.815 45.455 18.54 0.00 0.00 4.40
708 718 8.791355 AACCGAAGAACAAAAATACAACATAC 57.209 30.769 0.00 0.00 0.00 2.39
715 725 6.407623 GTTGCAAACCGAAGAACAAAAATAC 58.592 36.000 0.00 0.00 42.21 1.89
717 727 4.032331 CGTTGCAAACCGAAGAACAAAAAT 59.968 37.500 0.00 0.00 46.28 1.82
718 728 3.365220 CGTTGCAAACCGAAGAACAAAAA 59.635 39.130 0.00 0.00 46.28 1.94
723 733 0.933047 GGCGTTGCAAACCGAAGAAC 60.933 55.000 13.06 0.00 46.28 3.01
732 742 4.354939 CATGCCCGGCGTTGCAAA 62.355 61.111 22.15 3.64 41.50 3.68
757 767 4.141574 TGGTGCACATTCCCCTATTACTAC 60.142 45.833 20.43 0.00 0.00 2.73
769 783 7.382110 ACTATACATATCTCTGGTGCACATTC 58.618 38.462 20.43 1.36 0.00 2.67
786 801 4.392047 TCATACGGTCGGTGACTATACAT 58.608 43.478 0.00 0.00 32.47 2.29
790 805 4.214971 GTGTATCATACGGTCGGTGACTAT 59.785 45.833 0.00 0.00 32.47 2.12
799 814 4.678287 CGTGTAATGGTGTATCATACGGTC 59.322 45.833 0.00 0.00 0.00 4.79
807 822 2.607635 CCAGCACGTGTAATGGTGTATC 59.392 50.000 18.38 0.00 42.68 2.24
815 832 2.435938 CCGGCCAGCACGTGTAAT 60.436 61.111 18.38 0.38 0.00 1.89
834 851 0.109723 TTCCGGTTTCTGGGTTCTGG 59.890 55.000 0.00 0.00 0.00 3.86
835 852 1.975660 TTTCCGGTTTCTGGGTTCTG 58.024 50.000 0.00 0.00 0.00 3.02
836 853 2.740506 TTTTCCGGTTTCTGGGTTCT 57.259 45.000 0.00 0.00 0.00 3.01
837 854 3.572682 AGAATTTTCCGGTTTCTGGGTTC 59.427 43.478 0.00 0.00 0.00 3.62
838 855 3.320826 CAGAATTTTCCGGTTTCTGGGTT 59.679 43.478 21.07 3.16 41.58 4.11
839 856 2.890945 CAGAATTTTCCGGTTTCTGGGT 59.109 45.455 21.07 0.00 41.58 4.51
840 857 3.153919 TCAGAATTTTCCGGTTTCTGGG 58.846 45.455 24.80 11.51 44.09 4.45
882 899 5.006746 CGCAAAGTATAGTTCAGATTCCACC 59.993 44.000 0.00 0.00 0.00 4.61
883 900 5.581085 ACGCAAAGTATAGTTCAGATTCCAC 59.419 40.000 0.00 0.00 0.00 4.02
884 901 5.730550 ACGCAAAGTATAGTTCAGATTCCA 58.269 37.500 0.00 0.00 0.00 3.53
919 936 2.588877 GCGCACGCTGGGATGTAT 60.589 61.111 7.96 0.00 38.26 2.29
1042 1061 2.297315 TGAGATGTCTGTGAGTGGTGAC 59.703 50.000 0.00 0.00 0.00 3.67
1043 1062 2.597455 TGAGATGTCTGTGAGTGGTGA 58.403 47.619 0.00 0.00 0.00 4.02
1044 1063 3.391506 TTGAGATGTCTGTGAGTGGTG 57.608 47.619 0.00 0.00 0.00 4.17
1045 1064 3.805108 GCTTTGAGATGTCTGTGAGTGGT 60.805 47.826 0.00 0.00 0.00 4.16
1099 1136 0.389037 CTAAGCTGCTGTCGTCTGCA 60.389 55.000 12.92 12.92 44.05 4.41
1100 1137 1.691215 GCTAAGCTGCTGTCGTCTGC 61.691 60.000 1.35 4.67 38.66 4.26
1102 1139 0.389166 GTGCTAAGCTGCTGTCGTCT 60.389 55.000 1.35 0.00 0.00 4.18
1103 1140 0.389166 AGTGCTAAGCTGCTGTCGTC 60.389 55.000 1.35 0.00 0.00 4.20
1104 1141 0.668706 CAGTGCTAAGCTGCTGTCGT 60.669 55.000 1.35 0.00 31.68 4.34
1105 1142 0.668706 ACAGTGCTAAGCTGCTGTCG 60.669 55.000 1.35 0.00 39.58 4.35
1106 1143 1.462670 GAACAGTGCTAAGCTGCTGTC 59.537 52.381 1.35 0.00 41.43 3.51
1107 1144 1.517242 GAACAGTGCTAAGCTGCTGT 58.483 50.000 1.35 0.00 42.93 4.40
1108 1145 0.441533 CGAACAGTGCTAAGCTGCTG 59.558 55.000 1.35 0.00 37.47 4.41
1109 1146 0.034059 ACGAACAGTGCTAAGCTGCT 59.966 50.000 0.00 0.00 37.47 4.24
1110 1147 1.656095 CTACGAACAGTGCTAAGCTGC 59.344 52.381 0.00 0.00 37.47 5.25
1111 1148 1.656095 GCTACGAACAGTGCTAAGCTG 59.344 52.381 0.00 0.00 39.67 4.24
1112 1149 1.272490 TGCTACGAACAGTGCTAAGCT 59.728 47.619 0.00 0.00 33.18 3.74
1113 1150 1.390463 GTGCTACGAACAGTGCTAAGC 59.610 52.381 0.00 0.00 32.74 3.09
1114 1151 2.663602 CAGTGCTACGAACAGTGCTAAG 59.336 50.000 0.00 0.00 32.12 2.18
1115 1152 2.035449 ACAGTGCTACGAACAGTGCTAA 59.965 45.455 10.40 0.00 41.29 3.09
1116 1153 1.611977 ACAGTGCTACGAACAGTGCTA 59.388 47.619 10.40 0.00 41.29 3.49
1117 1154 0.389391 ACAGTGCTACGAACAGTGCT 59.611 50.000 10.40 0.00 41.29 4.40
1118 1155 1.192534 GAACAGTGCTACGAACAGTGC 59.807 52.381 10.40 0.00 41.29 4.40
1119 1156 1.452025 CGAACAGTGCTACGAACAGTG 59.548 52.381 9.34 9.34 42.88 3.66
1120 1157 1.335810 TCGAACAGTGCTACGAACAGT 59.664 47.619 0.00 0.00 0.00 3.55
1121 1158 1.979469 CTCGAACAGTGCTACGAACAG 59.021 52.381 7.93 0.00 34.50 3.16
1122 1159 1.335810 ACTCGAACAGTGCTACGAACA 59.664 47.619 7.93 0.00 32.26 3.18
1123 1160 2.047679 ACTCGAACAGTGCTACGAAC 57.952 50.000 7.93 0.00 32.26 3.95
1124 1161 2.413765 GCTACTCGAACAGTGCTACGAA 60.414 50.000 7.93 0.00 36.43 3.85
1125 1162 1.129998 GCTACTCGAACAGTGCTACGA 59.870 52.381 0.00 6.70 36.43 3.43
1126 1163 1.130749 AGCTACTCGAACAGTGCTACG 59.869 52.381 0.00 0.00 37.58 3.51
1127 1164 2.161808 TGAGCTACTCGAACAGTGCTAC 59.838 50.000 0.00 0.00 38.70 3.58
1128 1165 2.161808 GTGAGCTACTCGAACAGTGCTA 59.838 50.000 0.00 0.00 38.70 3.49
1162 1222 3.711059 CTGGCCATGGGAGCTGGAC 62.711 68.421 15.13 0.00 42.62 4.02
1262 1327 4.164664 CGGCGCTCGTACGTACCA 62.165 66.667 19.67 6.49 34.88 3.25
1273 1338 2.280797 TGTTTTCAGAGCGGCGCT 60.281 55.556 37.11 37.11 43.88 5.92
1282 1358 5.220265 GCAACATGAACAACACTGTTTTCAG 60.220 40.000 17.14 13.51 45.98 3.02
1312 1388 6.789262 GCATTGAGCAACTACAAGATAATGT 58.211 36.000 0.00 0.00 44.79 2.71
1328 1404 3.438297 AGCAAATCATGAGCATTGAGC 57.562 42.857 17.91 9.02 46.19 4.26
1329 1405 4.034858 ACGTAGCAAATCATGAGCATTGAG 59.965 41.667 17.91 10.31 0.00 3.02
1330 1406 3.940852 ACGTAGCAAATCATGAGCATTGA 59.059 39.130 17.91 1.26 0.00 2.57
1331 1407 4.033019 CACGTAGCAAATCATGAGCATTG 58.967 43.478 0.09 7.82 0.00 2.82
1332 1408 3.691118 ACACGTAGCAAATCATGAGCATT 59.309 39.130 0.09 0.00 0.00 3.56
1333 1409 3.064408 CACACGTAGCAAATCATGAGCAT 59.936 43.478 0.09 0.00 0.00 3.79
1415 1492 3.670091 CGACTACTTCTTCGGTCTGGAAC 60.670 52.174 0.00 0.00 0.00 3.62
1427 1504 3.054287 TGGACCTGATCTCGACTACTTCT 60.054 47.826 0.00 0.00 0.00 2.85
1499 1583 4.394920 GTAGAGGCTAGCTAGCTCTACATG 59.605 50.000 39.58 17.60 45.88 3.21
1524 1608 4.156008 GCCATTATCCACGTCTCAAAAGTT 59.844 41.667 0.00 0.00 0.00 2.66
1552 1641 3.492829 CCATCTTAAGGCTACGAGAACCC 60.493 52.174 1.85 0.00 0.00 4.11
1588 1693 8.942338 TTATTATCTGAAGTTATGAACACGCT 57.058 30.769 0.00 0.00 0.00 5.07
1598 1703 6.036735 GCGCACCAGTTTATTATCTGAAGTTA 59.963 38.462 0.30 0.00 34.02 2.24
1623 1728 1.623081 ATTACAGGAACACGCACGCG 61.623 55.000 10.36 10.36 46.03 6.01
1752 1867 3.063997 ACACTCAACAGACTCGCAAAAAG 59.936 43.478 0.00 0.00 0.00 2.27
1809 1927 7.442969 TGATCGGTAGAAACTTAACAAACATGT 59.557 33.333 0.00 0.00 0.00 3.21
1880 1998 8.645487 GTGTTTCTTCACCGAGTAATTAGTTAG 58.355 37.037 0.00 0.00 32.81 2.34
1914 2032 7.936584 TGTTTTTCAGTCCATTAGGTGTTTAG 58.063 34.615 0.00 0.00 35.89 1.85
1919 2037 6.158598 CCATTGTTTTTCAGTCCATTAGGTG 58.841 40.000 0.00 0.00 35.89 4.00
1926 2044 2.621055 CCGACCATTGTTTTTCAGTCCA 59.379 45.455 0.00 0.00 0.00 4.02
1945 2063 0.592500 CCACATGTCGAGTCGATCCG 60.593 60.000 19.75 11.99 38.42 4.18
2000 2118 9.937175 GCAACTATTACTGAAAGCTAATAAAGG 57.063 33.333 0.00 0.00 37.60 3.11
2019 2137 8.040132 GCCTCTTCTAATAGATGATGCAACTAT 58.960 37.037 20.31 0.00 38.75 2.12
2036 2154 3.759086 CCGATAGTAGCATGCCTCTTCTA 59.241 47.826 15.66 10.24 0.00 2.10
2049 2167 1.135527 TGTCAAACCGCCCGATAGTAG 59.864 52.381 0.00 0.00 0.00 2.57
2054 2172 1.079127 CTCTGTCAAACCGCCCGAT 60.079 57.895 0.00 0.00 0.00 4.18
2065 2183 2.563179 GCCTAGAAGTTCCACTCTGTCA 59.437 50.000 0.00 0.00 0.00 3.58
2136 3518 5.130292 AGTTTGTGCATTTCTCCATTGAG 57.870 39.130 0.00 0.00 40.17 3.02
2160 3542 3.800506 ACGACTGTTAGTAATTATGCCGC 59.199 43.478 0.00 0.00 0.00 6.53
2161 3543 4.443394 GGACGACTGTTAGTAATTATGCCG 59.557 45.833 0.00 0.00 0.00 5.69
2198 3580 1.225475 CGTCGCGAGTTTGTGCATC 60.225 57.895 10.24 0.00 0.00 3.91
2214 3596 3.057033 AGGACGACTGTTAGTAATTGCGT 60.057 43.478 0.00 0.00 0.00 5.24
2216 3598 4.842139 CAGGACGACTGTTAGTAATTGC 57.158 45.455 0.00 0.00 42.42 3.56
2235 3617 4.842091 GCGGCGGCTGCATTTCAG 62.842 66.667 27.92 4.01 45.35 3.02
2257 3639 6.036470 TGACTATAAATGAGTGAGCGTTCTG 58.964 40.000 0.00 0.00 0.00 3.02
2266 3648 8.689251 TTCGACTTTCTGACTATAAATGAGTG 57.311 34.615 0.00 0.00 0.00 3.51
2280 3793 4.811555 TGATGGTTGTTTCGACTTTCTG 57.188 40.909 0.00 0.00 0.00 3.02
2354 3868 0.389426 ATTGTGACGTCTGCCCGTAC 60.389 55.000 17.92 5.03 41.98 3.67
2384 3898 6.772716 ACTAACTGCCTTTTTCTTCTCAATGA 59.227 34.615 0.00 0.00 0.00 2.57
2439 3957 9.543231 TTATATTATGAGACGGAGGGAGTATTT 57.457 33.333 0.00 0.00 0.00 1.40
2441 3959 9.716556 ATTTATATTATGAGACGGAGGGAGTAT 57.283 33.333 0.00 0.00 0.00 2.12
2489 4007 5.574815 ATCGTGTAAATGTTTTTGCAAGC 57.425 34.783 0.00 0.00 38.84 4.01
2494 4012 6.019152 CCGTCCTATCGTGTAAATGTTTTTG 58.981 40.000 0.00 0.00 0.00 2.44
2508 4026 1.072015 ACTACTCCCTCCGTCCTATCG 59.928 57.143 0.00 0.00 0.00 2.92
2524 4042 3.118000 AGCCACTGCCCCTTTATAACTAC 60.118 47.826 0.00 0.00 38.69 2.73
2544 4062 3.525537 TGACTACATCTTAGCAAGCAGC 58.474 45.455 0.00 0.00 46.19 5.25
2547 4065 6.045318 TCTTCATGACTACATCTTAGCAAGC 58.955 40.000 0.00 0.00 34.15 4.01
2551 4069 7.656412 TGATCTCTTCATGACTACATCTTAGC 58.344 38.462 0.00 0.00 34.15 3.09
2555 4073 6.832900 TCACTGATCTCTTCATGACTACATCT 59.167 38.462 0.00 0.00 34.15 2.90
2562 4080 5.273674 TGGATCACTGATCTCTTCATGAC 57.726 43.478 16.92 0.38 38.91 3.06
2566 4084 5.688814 ACATTGGATCACTGATCTCTTCA 57.311 39.130 16.92 5.52 38.91 3.02
2567 4085 7.044181 TGTAACATTGGATCACTGATCTCTTC 58.956 38.462 16.92 3.19 38.91 2.87
2568 4086 6.950842 TGTAACATTGGATCACTGATCTCTT 58.049 36.000 16.92 5.97 38.91 2.85
2569 4087 6.550938 TGTAACATTGGATCACTGATCTCT 57.449 37.500 16.92 1.92 38.91 3.10
2570 4088 6.595326 TGTTGTAACATTGGATCACTGATCTC 59.405 38.462 16.92 9.06 35.34 2.75
2571 4089 6.475504 TGTTGTAACATTGGATCACTGATCT 58.524 36.000 16.92 1.13 35.34 2.75
2572 4090 6.741992 TGTTGTAACATTGGATCACTGATC 57.258 37.500 10.22 10.22 34.77 2.92
2573 4091 7.309377 CCTTTGTTGTAACATTGGATCACTGAT 60.309 37.037 9.50 0.00 38.95 2.90
2574 4092 6.016360 CCTTTGTTGTAACATTGGATCACTGA 60.016 38.462 9.50 0.00 38.95 3.41
2575 4093 6.016360 TCCTTTGTTGTAACATTGGATCACTG 60.016 38.462 12.23 0.00 38.95 3.66
2576 4094 6.068010 TCCTTTGTTGTAACATTGGATCACT 58.932 36.000 12.23 0.00 38.95 3.41
2577 4095 6.325919 TCCTTTGTTGTAACATTGGATCAC 57.674 37.500 12.23 0.00 38.95 3.06
2578 4096 6.968263 TTCCTTTGTTGTAACATTGGATCA 57.032 33.333 15.17 4.54 39.04 2.92
2579 4097 7.433680 AGTTTCCTTTGTTGTAACATTGGATC 58.566 34.615 15.17 12.49 39.04 3.36
2580 4098 7.360113 AGTTTCCTTTGTTGTAACATTGGAT 57.640 32.000 15.17 4.05 39.04 3.41
2581 4099 6.783708 AGTTTCCTTTGTTGTAACATTGGA 57.216 33.333 12.23 12.23 38.95 3.53
2582 4100 8.934507 TTAAGTTTCCTTTGTTGTAACATTGG 57.065 30.769 0.00 4.61 38.95 3.16
2583 4101 9.030301 CCTTAAGTTTCCTTTGTTGTAACATTG 57.970 33.333 0.97 0.00 38.95 2.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.