Multiple sequence alignment - TraesCS2D01G523600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G523600 chr2D 100.000 4164 0 0 563 4726 612364605 612368768 0.000000e+00 7690.0
1 TraesCS2D01G523600 chr2D 100.000 244 0 0 1 244 612364043 612364286 7.210000e-123 451.0
2 TraesCS2D01G523600 chr2D 86.250 80 11 0 4317 4396 552572713 552572792 2.340000e-13 87.9
3 TraesCS2D01G523600 chr2D 79.091 110 16 4 4385 4490 560322924 560323030 8.490000e-08 69.4
4 TraesCS2D01G523600 chr2B 95.708 3681 103 25 584 4235 747236911 747240565 0.000000e+00 5871.0
5 TraesCS2D01G523600 chr2B 81.409 511 35 13 4262 4726 747241427 747241923 3.480000e-96 363.0
6 TraesCS2D01G523600 chr2B 86.179 246 12 8 1 242 747236412 747236639 3.650000e-61 246.0
7 TraesCS2D01G523600 chr2B 100.000 28 0 0 4456 4483 196154879 196154906 9.000000e-03 52.8
8 TraesCS2D01G523600 chr2A 95.298 3360 88 24 599 3944 744491640 744494943 0.000000e+00 5265.0
9 TraesCS2D01G523600 chr2A 82.123 537 40 25 4244 4726 744496260 744496794 4.400000e-110 409.0
10 TraesCS2D01G523600 chr2A 88.435 294 26 5 3943 4235 744495214 744495500 9.730000e-92 348.0
11 TraesCS2D01G523600 chr2A 91.241 137 10 1 8 142 744491222 744491358 8.080000e-43 185.0
12 TraesCS2D01G523600 chr3B 87.605 1307 142 14 984 2283 584811391 584812684 0.000000e+00 1498.0
13 TraesCS2D01G523600 chr3B 88.101 832 77 12 2771 3600 584813278 584814089 0.000000e+00 968.0
14 TraesCS2D01G523600 chr3B 86.905 420 46 4 2280 2693 584812778 584813194 3.330000e-126 462.0
15 TraesCS2D01G523600 chr3A 87.452 1307 144 14 984 2283 587635765 587637058 0.000000e+00 1487.0
16 TraesCS2D01G523600 chr3A 83.789 1499 171 47 2280 3746 587637139 587638597 0.000000e+00 1356.0
17 TraesCS2D01G523600 chr3D 87.136 1306 150 12 984 2283 445858186 445859479 0.000000e+00 1465.0
18 TraesCS2D01G523600 chr3D 86.643 861 79 20 2771 3627 445860077 445860905 0.000000e+00 920.0
19 TraesCS2D01G523600 chr3D 87.381 420 44 4 2280 2693 445859573 445859989 1.540000e-129 473.0
20 TraesCS2D01G523600 chr3D 79.085 153 19 8 4385 4536 438057849 438057709 5.040000e-15 93.5
21 TraesCS2D01G523600 chr3D 77.465 142 22 5 4393 4534 421287963 421287832 5.070000e-10 76.8
22 TraesCS2D01G523600 chr1A 85.757 1004 139 4 1283 2284 497243267 497242266 0.000000e+00 1059.0
23 TraesCS2D01G523600 chr1A 78.382 1397 234 57 2278 3658 497242176 497240832 0.000000e+00 845.0
24 TraesCS2D01G523600 chr1A 87.097 186 18 2 1098 1283 497243524 497243345 6.200000e-49 206.0
25 TraesCS2D01G523600 chr1D 85.458 1004 142 4 1283 2284 401134707 401133706 0.000000e+00 1042.0
26 TraesCS2D01G523600 chr1D 79.345 886 140 33 2779 3658 401133131 401132283 2.450000e-162 582.0
27 TraesCS2D01G523600 chr1D 88.462 312 32 4 2278 2587 401133630 401133321 1.610000e-99 374.0
28 TraesCS2D01G523600 chr1D 87.097 186 18 2 1098 1283 401134973 401134794 6.200000e-49 206.0
29 TraesCS2D01G523600 chr1D 92.857 42 1 1 4389 4428 65838179 65838220 5.110000e-05 60.2
30 TraesCS2D01G523600 chr1B 85.259 1004 144 4 1283 2284 538868158 538867157 0.000000e+00 1031.0
31 TraesCS2D01G523600 chr1B 79.275 883 146 29 2779 3658 538866570 538865722 2.450000e-162 582.0
32 TraesCS2D01G523600 chr1B 83.871 403 50 14 2278 2677 538867077 538866687 2.080000e-98 370.0
33 TraesCS2D01G523600 chr1B 87.097 186 18 2 1098 1283 538868408 538868229 6.200000e-49 206.0
34 TraesCS2D01G523600 chr1B 89.394 66 7 0 4326 4391 562512385 562512320 3.030000e-12 84.2
35 TraesCS2D01G523600 chr5D 76.280 371 72 13 1366 1728 531291688 531292050 2.900000e-42 183.0
36 TraesCS2D01G523600 chr5D 78.169 142 24 6 4402 4540 357151430 357151567 3.030000e-12 84.2
37 TraesCS2D01G523600 chr6D 86.957 92 11 1 4309 4399 9364745 9364654 8.370000e-18 102.0
38 TraesCS2D01G523600 chr6D 85.714 77 9 2 4319 4395 5974016 5974090 3.920000e-11 80.5
39 TraesCS2D01G523600 chr6A 88.312 77 8 1 4324 4399 11160553 11160629 1.810000e-14 91.6
40 TraesCS2D01G523600 chr7A 84.043 94 13 2 4457 4548 556296023 556296116 6.510000e-14 89.8
41 TraesCS2D01G523600 chr7A 90.698 43 2 2 4456 4497 338005559 338005518 6.610000e-04 56.5
42 TraesCS2D01G523600 chr7A 100.000 28 0 0 4456 4483 338105756 338105783 9.000000e-03 52.8
43 TraesCS2D01G523600 chr5B 87.500 72 9 0 4324 4395 516457232 516457161 3.030000e-12 84.2
44 TraesCS2D01G523600 chr5B 97.297 37 1 0 4400 4436 64 28 3.950000e-06 63.9
45 TraesCS2D01G523600 chr5B 97.297 37 1 0 4400 4436 6101 6065 3.950000e-06 63.9
46 TraesCS2D01G523600 chr5B 90.698 43 4 0 4394 4436 609936972 609937014 1.840000e-04 58.4
47 TraesCS2D01G523600 chr7D 85.897 78 10 1 4318 4395 58134543 58134619 1.090000e-11 82.4
48 TraesCS2D01G523600 chr7D 84.337 83 11 2 4318 4399 536153795 536153876 3.920000e-11 80.5
49 TraesCS2D01G523600 chrUn 81.395 86 10 5 4456 4538 259817840 259817758 1.100000e-06 65.8
50 TraesCS2D01G523600 chr4A 83.099 71 12 0 3049 3119 641291417 641291347 1.100000e-06 65.8
51 TraesCS2D01G523600 chr6B 92.500 40 3 0 38 77 479080497 479080458 1.840000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G523600 chr2D 612364043 612368768 4725 False 4070.500000 7690 100.000000 1 4726 2 chr2D.!!$F3 4725
1 TraesCS2D01G523600 chr2B 747236412 747241923 5511 False 2160.000000 5871 87.765333 1 4726 3 chr2B.!!$F2 4725
2 TraesCS2D01G523600 chr2A 744491222 744496794 5572 False 1551.750000 5265 89.274250 8 4726 4 chr2A.!!$F1 4718
3 TraesCS2D01G523600 chr3B 584811391 584814089 2698 False 976.000000 1498 87.537000 984 3600 3 chr3B.!!$F1 2616
4 TraesCS2D01G523600 chr3A 587635765 587638597 2832 False 1421.500000 1487 85.620500 984 3746 2 chr3A.!!$F1 2762
5 TraesCS2D01G523600 chr3D 445858186 445860905 2719 False 952.666667 1465 87.053333 984 3627 3 chr3D.!!$F1 2643
6 TraesCS2D01G523600 chr1A 497240832 497243524 2692 True 703.333333 1059 83.745333 1098 3658 3 chr1A.!!$R1 2560
7 TraesCS2D01G523600 chr1D 401132283 401134973 2690 True 551.000000 1042 85.090500 1098 3658 4 chr1D.!!$R1 2560
8 TraesCS2D01G523600 chr1B 538865722 538868408 2686 True 547.250000 1031 83.875500 1098 3658 4 chr1B.!!$R2 2560

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
718 726 0.107508 ATGTAAGCCTCTGCATGCGT 60.108 50.000 14.09 0.0 41.13 5.24 F
865 879 1.080025 CTTTCCCCCGTCTGTCGTC 60.080 63.158 0.00 0.0 37.94 4.20 F
2316 2631 1.447140 GTTCGCGGTGATGGTGCTA 60.447 57.895 6.13 0.0 0.00 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2696 3020 5.486526 TGAAGTTTTCAATTGGCAACTGTT 58.513 33.333 18.4 8.45 36.59 3.16 R
3128 3475 0.322546 GGAGGAACCGCAAGATGGTT 60.323 55.000 0.0 0.00 42.91 3.67 R
4001 4694 2.880890 GGAGCAGCGATCAATGGTAAAT 59.119 45.455 0.0 0.00 0.00 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
142 145 8.553459 AATGACAAATGTAGAGGTGAAGTAAG 57.447 34.615 0.00 0.00 0.00 2.34
143 146 5.932303 TGACAAATGTAGAGGTGAAGTAAGC 59.068 40.000 0.00 0.00 0.00 3.09
144 147 5.246307 ACAAATGTAGAGGTGAAGTAAGCC 58.754 41.667 0.00 0.00 0.00 4.35
145 148 5.221843 ACAAATGTAGAGGTGAAGTAAGCCA 60.222 40.000 0.00 0.00 0.00 4.75
146 149 5.700402 AATGTAGAGGTGAAGTAAGCCAT 57.300 39.130 0.00 0.00 0.00 4.40
147 150 5.700402 ATGTAGAGGTGAAGTAAGCCATT 57.300 39.130 0.00 0.00 0.00 3.16
148 151 5.499004 TGTAGAGGTGAAGTAAGCCATTT 57.501 39.130 0.00 0.00 0.00 2.32
149 152 5.876357 TGTAGAGGTGAAGTAAGCCATTTT 58.124 37.500 0.00 0.00 0.00 1.82
150 153 5.705441 TGTAGAGGTGAAGTAAGCCATTTTG 59.295 40.000 0.00 0.00 0.00 2.44
151 154 3.507622 AGAGGTGAAGTAAGCCATTTTGC 59.492 43.478 0.00 0.00 0.00 3.68
152 155 2.562738 AGGTGAAGTAAGCCATTTTGCC 59.437 45.455 0.00 0.00 0.00 4.52
153 156 2.562738 GGTGAAGTAAGCCATTTTGCCT 59.437 45.455 0.00 0.00 0.00 4.75
154 157 3.006859 GGTGAAGTAAGCCATTTTGCCTT 59.993 43.478 0.00 0.00 0.00 4.35
155 158 4.503123 GGTGAAGTAAGCCATTTTGCCTTT 60.503 41.667 0.00 0.00 0.00 3.11
156 159 5.056480 GTGAAGTAAGCCATTTTGCCTTTT 58.944 37.500 0.00 0.00 0.00 2.27
157 160 5.527214 GTGAAGTAAGCCATTTTGCCTTTTT 59.473 36.000 0.00 0.00 0.00 1.94
158 161 5.526846 TGAAGTAAGCCATTTTGCCTTTTTG 59.473 36.000 0.00 0.00 0.00 2.44
159 162 5.034852 AGTAAGCCATTTTGCCTTTTTGT 57.965 34.783 0.00 0.00 0.00 2.83
164 167 3.242706 GCCATTTTGCCTTTTTGTGACAC 60.243 43.478 0.00 0.00 0.00 3.67
176 179 7.629222 GCCTTTTTGTGACACTATTCATGCTAT 60.629 37.037 7.20 0.00 0.00 2.97
184 187 7.225538 GTGACACTATTCATGCTATATATGCCC 59.774 40.741 0.00 0.00 0.00 5.36
636 641 8.494016 AATTATAGACACCTTGCTTCAGTTAC 57.506 34.615 0.00 0.00 0.00 2.50
681 686 3.881688 CTGGTGCCAGAAATAGGATGAAG 59.118 47.826 12.66 0.00 46.30 3.02
683 688 4.263905 TGGTGCCAGAAATAGGATGAAGTT 60.264 41.667 0.00 0.00 0.00 2.66
684 689 5.045213 TGGTGCCAGAAATAGGATGAAGTTA 60.045 40.000 0.00 0.00 0.00 2.24
685 690 5.529060 GGTGCCAGAAATAGGATGAAGTTAG 59.471 44.000 0.00 0.00 0.00 2.34
718 726 0.107508 ATGTAAGCCTCTGCATGCGT 60.108 50.000 14.09 0.00 41.13 5.24
754 762 2.094762 ACCTCACAATTCGTGGTAGC 57.905 50.000 7.78 0.00 46.36 3.58
863 877 1.374252 CACTTTCCCCCGTCTGTCG 60.374 63.158 0.00 0.00 39.52 4.35
864 878 1.835712 ACTTTCCCCCGTCTGTCGT 60.836 57.895 0.00 0.00 37.94 4.34
865 879 1.080025 CTTTCCCCCGTCTGTCGTC 60.080 63.158 0.00 0.00 37.94 4.20
908 932 2.376518 TCAAGTTGCCATCTTCCTTCCT 59.623 45.455 0.00 0.00 0.00 3.36
2133 2250 2.988549 GCTCGTGCTCGTGTTCGTG 61.989 63.158 8.17 0.00 38.33 4.35
2316 2631 1.447140 GTTCGCGGTGATGGTGCTA 60.447 57.895 6.13 0.00 0.00 3.49
2696 3020 2.280797 GCTCACCGGTCAGTGCAA 60.281 61.111 7.53 0.00 37.68 4.08
3400 3756 2.359850 GGGCATGGACAACAGCGA 60.360 61.111 0.00 0.00 0.00 4.93
3791 4206 2.156917 CGTGTCCCTGTAGTGAGTGTA 58.843 52.381 0.00 0.00 0.00 2.90
3792 4207 2.555325 CGTGTCCCTGTAGTGAGTGTAA 59.445 50.000 0.00 0.00 0.00 2.41
3793 4208 3.366070 CGTGTCCCTGTAGTGAGTGTAAG 60.366 52.174 0.00 0.00 0.00 2.34
3794 4209 3.573110 GTGTCCCTGTAGTGAGTGTAAGT 59.427 47.826 0.00 0.00 0.00 2.24
3795 4210 3.572682 TGTCCCTGTAGTGAGTGTAAGTG 59.427 47.826 0.00 0.00 0.00 3.16
3796 4211 3.573110 GTCCCTGTAGTGAGTGTAAGTGT 59.427 47.826 0.00 0.00 0.00 3.55
3797 4212 3.572682 TCCCTGTAGTGAGTGTAAGTGTG 59.427 47.826 0.00 0.00 0.00 3.82
3798 4213 3.321111 CCCTGTAGTGAGTGTAAGTGTGT 59.679 47.826 0.00 0.00 0.00 3.72
3882 4297 2.055838 TCTGTTATGTGACGTGAACGC 58.944 47.619 2.11 0.00 44.43 4.84
3994 4687 6.346096 TGATTTTCTAATTAGGGTCAGTCGG 58.654 40.000 12.54 0.00 0.00 4.79
3995 4688 5.750352 TTTTCTAATTAGGGTCAGTCGGT 57.250 39.130 12.54 0.00 0.00 4.69
3996 4689 5.750352 TTTCTAATTAGGGTCAGTCGGTT 57.250 39.130 12.54 0.00 0.00 4.44
4034 4727 3.092192 CTGCTCCAAGATGCGTGCG 62.092 63.158 0.00 0.00 0.00 5.34
4036 4729 4.214383 CTCCAAGATGCGTGCGCG 62.214 66.667 16.86 16.86 45.51 6.86
4047 4742 2.248431 GTGCGCGCTCTTCGTTTT 59.752 55.556 33.29 0.00 41.07 2.43
4111 4806 0.249868 CTGACCACTGTTTCGGCTCA 60.250 55.000 0.00 0.00 0.00 4.26
4120 4815 1.372499 TTTCGGCTCAGTCGTTCCG 60.372 57.895 0.00 0.00 42.96 4.30
4123 4818 1.513586 CGGCTCAGTCGTTCCGTAC 60.514 63.158 0.00 0.00 37.33 3.67
4125 4820 1.089920 GGCTCAGTCGTTCCGTACTA 58.910 55.000 0.00 0.00 0.00 1.82
4170 4865 7.695480 TTTCTTATAGGCTTGTTTGTATGCA 57.305 32.000 0.00 0.00 0.00 3.96
4184 4879 1.667724 GTATGCATTGTCGCTTCTGCT 59.332 47.619 3.54 0.00 35.66 4.24
4235 4930 3.885976 TGGGTAGTTTTGGGATGTTGA 57.114 42.857 0.00 0.00 0.00 3.18
4238 4933 4.770010 TGGGTAGTTTTGGGATGTTGAATC 59.230 41.667 0.00 0.00 0.00 2.52
4240 4935 5.245075 GGGTAGTTTTGGGATGTTGAATCAA 59.755 40.000 0.00 0.00 0.00 2.57
4241 4936 6.239458 GGGTAGTTTTGGGATGTTGAATCAAA 60.239 38.462 0.00 0.00 0.00 2.69
4242 4937 7.213678 GGTAGTTTTGGGATGTTGAATCAAAA 58.786 34.615 0.00 0.00 35.71 2.44
4337 5906 9.688592 TTGCAAATTTTGTCATTTTGTTTCTTT 57.311 22.222 10.65 0.00 33.83 2.52
4344 5913 8.614469 TTTGTCATTTTGTTTCTTTTGGAAGT 57.386 26.923 0.00 0.00 35.16 3.01
4420 5995 3.297134 AGGGTAATACCAATGCCACTG 57.703 47.619 12.03 0.00 41.02 3.66
4719 6340 7.082700 TGCGAAGATTAATTGAGTTGCATTA 57.917 32.000 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 77 7.843490 TCTCGAAATCGGATTTGAAGTATTT 57.157 32.000 19.96 0.00 40.29 1.40
127 130 5.392057 GCAAAATGGCTTACTTCACCTCTAC 60.392 44.000 0.00 0.00 0.00 2.59
128 131 4.700213 GCAAAATGGCTTACTTCACCTCTA 59.300 41.667 0.00 0.00 0.00 2.43
142 145 2.941720 TGTCACAAAAAGGCAAAATGGC 59.058 40.909 0.00 0.00 44.10 4.40
143 146 4.190772 AGTGTCACAAAAAGGCAAAATGG 58.809 39.130 5.62 0.00 0.00 3.16
144 147 7.224362 TGAATAGTGTCACAAAAAGGCAAAATG 59.776 33.333 5.62 0.00 0.00 2.32
145 148 7.271511 TGAATAGTGTCACAAAAAGGCAAAAT 58.728 30.769 5.62 0.00 0.00 1.82
146 149 6.634805 TGAATAGTGTCACAAAAAGGCAAAA 58.365 32.000 5.62 0.00 0.00 2.44
147 150 6.214191 TGAATAGTGTCACAAAAAGGCAAA 57.786 33.333 5.62 0.00 0.00 3.68
148 151 5.843673 TGAATAGTGTCACAAAAAGGCAA 57.156 34.783 5.62 0.00 0.00 4.52
149 152 5.771469 CATGAATAGTGTCACAAAAAGGCA 58.229 37.500 5.62 0.00 0.00 4.75
150 153 4.622740 GCATGAATAGTGTCACAAAAAGGC 59.377 41.667 5.62 0.00 0.00 4.35
151 154 6.017400 AGCATGAATAGTGTCACAAAAAGG 57.983 37.500 5.62 0.00 0.00 3.11
156 159 9.154847 GCATATATAGCATGAATAGTGTCACAA 57.845 33.333 5.62 0.00 0.00 3.33
157 160 7.765819 GGCATATATAGCATGAATAGTGTCACA 59.234 37.037 5.62 0.00 0.00 3.58
158 161 7.225538 GGGCATATATAGCATGAATAGTGTCAC 59.774 40.741 0.00 0.00 0.00 3.67
159 162 7.126268 AGGGCATATATAGCATGAATAGTGTCA 59.874 37.037 0.00 0.00 0.00 3.58
563 568 6.323203 ACATATTTTAGATGATGCCACAGC 57.677 37.500 0.00 0.00 40.48 4.40
602 607 9.700831 AGCAAGGTGTCTATAATTCCTAAAAAT 57.299 29.630 0.00 0.00 0.00 1.82
627 632 2.480037 TGCATCGTGCTTGTAACTGAAG 59.520 45.455 10.54 0.00 45.31 3.02
693 701 1.028330 GCAGAGGCTTACATGCAGCA 61.028 55.000 17.06 0.00 39.21 4.41
718 726 1.076677 AGGTTCTCAGTAAGGGTCGGA 59.923 52.381 0.00 0.00 0.00 4.55
754 762 3.244112 ACCGGTCACCTTAGTTTCTCAAG 60.244 47.826 0.00 0.00 0.00 3.02
844 858 1.752833 GACAGACGGGGGAAAGTGT 59.247 57.895 0.00 0.00 0.00 3.55
863 877 0.179124 CAGCTAGCTGAACGGAGGAC 60.179 60.000 36.47 0.00 46.30 3.85
864 878 1.949847 GCAGCTAGCTGAACGGAGGA 61.950 60.000 41.87 0.00 46.30 3.71
865 879 1.520342 GCAGCTAGCTGAACGGAGG 60.520 63.158 41.87 18.20 46.30 4.30
908 932 0.975135 AGCTCTGCTTCTGCTTCTGA 59.025 50.000 0.00 0.00 33.89 3.27
2696 3020 5.486526 TGAAGTTTTCAATTGGCAACTGTT 58.513 33.333 18.40 8.45 36.59 3.16
3128 3475 0.322546 GGAGGAACCGCAAGATGGTT 60.323 55.000 0.00 0.00 42.91 3.67
3791 4206 8.500753 TGAAAGAACAATACTGTTACACACTT 57.499 30.769 0.00 0.00 45.98 3.16
3792 4207 7.985184 TCTGAAAGAACAATACTGTTACACACT 59.015 33.333 0.00 0.00 45.98 3.55
3793 4208 8.138365 TCTGAAAGAACAATACTGTTACACAC 57.862 34.615 0.00 0.00 45.98 3.82
3882 4297 7.496920 TGTTGATGAGTAAGCCAATAATCTCAG 59.503 37.037 0.00 0.00 35.82 3.35
3996 4689 6.862209 AGCAGCGATCAATGGTAAATAAAAA 58.138 32.000 0.00 0.00 0.00 1.94
4001 4694 2.880890 GGAGCAGCGATCAATGGTAAAT 59.119 45.455 0.00 0.00 0.00 1.40
4047 4742 5.650266 ACATGACAGTACACCAACAGAAAAA 59.350 36.000 0.00 0.00 0.00 1.94
4054 4749 4.499019 CCCAAAACATGACAGTACACCAAC 60.499 45.833 0.00 0.00 0.00 3.77
4210 4905 6.209788 TCAACATCCCAAAACTACCCATAAAC 59.790 38.462 0.00 0.00 0.00 2.01
4307 5859 8.450385 AACAAAATGACAAAATTTGCAAACAG 57.550 26.923 15.41 7.20 37.52 3.16
4337 5906 9.952030 TTAGTGACATTGATATTACACTTCCAA 57.048 29.630 0.00 0.00 38.99 3.53
4391 5960 9.440761 TGGCATTGGTATTACCCTTAAATAAAT 57.559 29.630 10.37 0.00 37.50 1.40
4412 5987 5.733620 AAGAACAAATGAATCAGTGGCAT 57.266 34.783 0.00 0.00 0.00 4.40
4444 6019 7.733402 AATAGTGCAATTTCACAGCAAAATT 57.267 28.000 10.86 1.60 40.35 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.