Multiple sequence alignment - TraesCS2D01G523400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G523400 chr2D 100.000 3908 0 0 1 3908 612340191 612344098 0.000000e+00 7217
1 TraesCS2D01G523400 chr2B 92.506 2135 125 21 1777 3908 747178754 747180856 0.000000e+00 3024
2 TraesCS2D01G523400 chr2B 88.404 871 73 16 716 1559 747177637 747178506 0.000000e+00 1024
3 TraesCS2D01G523400 chr2B 94.839 155 7 1 1609 1763 747178492 747178645 1.400000e-59 241
4 TraesCS2D01G523400 chr2A 94.485 1523 70 5 2393 3908 744447538 744449053 0.000000e+00 2335
5 TraesCS2D01G523400 chr2A 92.857 308 20 1 851 1158 744445862 744446167 2.770000e-121 446
6 TraesCS2D01G523400 chr2A 88.270 341 31 2 1227 1559 744446526 744446865 2.190000e-107 399
7 TraesCS2D01G523400 chr2A 86.697 218 20 5 1961 2177 744447104 744447313 2.350000e-57 233
8 TraesCS2D01G523400 chr2A 76.758 512 47 42 18 502 744445252 744445718 1.830000e-53 220
9 TraesCS2D01G523400 chr2A 91.304 138 12 0 1605 1742 744446847 744446984 5.150000e-44 189
10 TraesCS2D01G523400 chr7D 83.202 381 34 15 3306 3684 618084466 618084818 4.870000e-84 322
11 TraesCS2D01G523400 chr7B 80.741 405 34 23 3299 3696 712467616 712467983 3.850000e-70 276
12 TraesCS2D01G523400 chr7A 79.874 318 26 21 3299 3614 711814181 711814462 8.560000e-47 198
13 TraesCS2D01G523400 chr5B 94.000 100 6 0 3809 3908 382332611 382332710 6.760000e-33 152


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G523400 chr2D 612340191 612344098 3907 False 7217.000000 7217 100.000000 1 3908 1 chr2D.!!$F1 3907
1 TraesCS2D01G523400 chr2B 747177637 747180856 3219 False 1429.666667 3024 91.916333 716 3908 3 chr2B.!!$F1 3192
2 TraesCS2D01G523400 chr2A 744445252 744449053 3801 False 637.000000 2335 88.395167 18 3908 6 chr2A.!!$F1 3890

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
96 97 0.301687 GCATGTTTCGATCATCGCGT 59.698 50.0 5.77 0.0 40.21 6.01 F
458 486 0.464036 AGCAACTCACGGTTCAGACA 59.536 50.0 0.00 0.0 35.74 3.41 F
1056 1106 0.532640 TGTCAAGCAGCGCTTCTGAA 60.533 50.0 11.16 0.0 46.77 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2081 2557 1.134401 CCCCAACGAGATATGCACACT 60.134 52.381 0.00 0.00 0.00 3.55 R
2135 2611 1.071471 CTCGACCTGCCAAGTTGGT 59.929 57.895 22.85 2.87 40.46 3.67 R
2915 3495 0.865769 CTGTTCGAACGGGGAGTTTG 59.134 55.000 26.35 4.03 44.35 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 3.459145 CCTGTGCTCTGATCTCATTCAG 58.541 50.000 0.00 0.00 43.70 3.02
44 45 3.118702 CCTGTGCTCTGATCTCATTCAGT 60.119 47.826 0.00 0.00 43.02 3.41
57 58 4.464244 TCTCATTCAGTCTTGTCCGATTCT 59.536 41.667 0.00 0.00 0.00 2.40
58 59 5.652452 TCTCATTCAGTCTTGTCCGATTCTA 59.348 40.000 0.00 0.00 0.00 2.10
59 60 5.895928 TCATTCAGTCTTGTCCGATTCTAG 58.104 41.667 0.00 0.00 0.00 2.43
61 62 5.723672 TTCAGTCTTGTCCGATTCTAGTT 57.276 39.130 0.00 0.00 0.00 2.24
73 74 7.555195 TGTCCGATTCTAGTTCAGATTGTACTA 59.445 37.037 0.00 0.00 30.57 1.82
76 77 8.071368 CCGATTCTAGTTCAGATTGTACTACTC 58.929 40.741 0.00 0.00 30.57 2.59
78 79 6.360844 TCTAGTTCAGATTGTACTACTCGC 57.639 41.667 0.00 0.00 30.57 5.03
83 84 5.324784 TCAGATTGTACTACTCGCATGTT 57.675 39.130 0.00 0.00 0.00 2.71
84 85 5.720202 TCAGATTGTACTACTCGCATGTTT 58.280 37.500 0.00 0.00 0.00 2.83
85 86 5.805486 TCAGATTGTACTACTCGCATGTTTC 59.195 40.000 0.00 0.00 0.00 2.78
86 87 4.798907 AGATTGTACTACTCGCATGTTTCG 59.201 41.667 0.00 0.00 0.00 3.46
87 88 3.835378 TGTACTACTCGCATGTTTCGA 57.165 42.857 0.00 0.00 34.52 3.71
88 89 4.365899 TGTACTACTCGCATGTTTCGAT 57.634 40.909 0.00 0.00 35.25 3.59
89 90 4.348656 TGTACTACTCGCATGTTTCGATC 58.651 43.478 0.00 0.00 35.25 3.69
92 93 4.045104 ACTACTCGCATGTTTCGATCATC 58.955 43.478 0.00 0.00 35.25 2.92
93 94 1.854743 ACTCGCATGTTTCGATCATCG 59.145 47.619 0.00 0.00 42.10 3.84
95 96 0.715959 CGCATGTTTCGATCATCGCG 60.716 55.000 20.37 20.37 40.21 5.87
96 97 0.301687 GCATGTTTCGATCATCGCGT 59.698 50.000 5.77 0.00 40.21 6.01
97 98 1.654775 GCATGTTTCGATCATCGCGTC 60.655 52.381 5.77 0.00 40.21 5.19
98 99 0.846401 ATGTTTCGATCATCGCGTCG 59.154 50.000 5.77 8.44 40.21 5.12
99 100 1.137459 TGTTTCGATCATCGCGTCGG 61.137 55.000 15.49 2.86 40.21 4.79
109 110 3.897502 CGCGTCGGTGTATGTGCG 61.898 66.667 0.00 0.00 39.57 5.34
110 111 3.550992 GCGTCGGTGTATGTGCGG 61.551 66.667 0.00 0.00 0.00 5.69
126 127 0.933097 GCGGTATGCATCTCTGTGTG 59.067 55.000 0.19 0.00 45.45 3.82
127 128 1.471501 GCGGTATGCATCTCTGTGTGA 60.472 52.381 0.19 0.00 45.45 3.58
128 129 2.196749 CGGTATGCATCTCTGTGTGAC 58.803 52.381 0.19 0.00 0.00 3.67
129 130 2.417243 CGGTATGCATCTCTGTGTGACA 60.417 50.000 0.19 0.00 0.00 3.58
132 133 2.916702 TGCATCTCTGTGTGACAGTT 57.083 45.000 3.75 0.00 46.03 3.16
134 135 2.874086 TGCATCTCTGTGTGACAGTTTG 59.126 45.455 3.75 2.45 46.03 2.93
135 136 2.874701 GCATCTCTGTGTGACAGTTTGT 59.125 45.455 3.75 0.00 46.03 2.83
136 137 3.303593 GCATCTCTGTGTGACAGTTTGTG 60.304 47.826 3.75 1.68 46.03 3.33
137 138 2.279741 TCTCTGTGTGACAGTTTGTGC 58.720 47.619 3.75 0.00 46.03 4.57
139 140 2.009051 TCTGTGTGACAGTTTGTGCTG 58.991 47.619 3.75 0.00 46.03 4.41
141 142 1.094785 GTGTGACAGTTTGTGCTGGT 58.905 50.000 0.00 0.00 40.59 4.00
142 143 1.472480 GTGTGACAGTTTGTGCTGGTT 59.528 47.619 0.00 0.00 40.59 3.67
143 144 2.094752 GTGTGACAGTTTGTGCTGGTTT 60.095 45.455 0.00 0.00 40.59 3.27
145 146 3.179048 GTGACAGTTTGTGCTGGTTTTC 58.821 45.455 0.00 0.00 40.59 2.29
146 147 3.088532 TGACAGTTTGTGCTGGTTTTCT 58.911 40.909 0.00 0.00 40.59 2.52
147 148 3.119531 TGACAGTTTGTGCTGGTTTTCTG 60.120 43.478 0.00 0.00 40.59 3.02
148 149 3.088532 ACAGTTTGTGCTGGTTTTCTGA 58.911 40.909 0.00 0.00 40.59 3.27
149 150 3.701040 ACAGTTTGTGCTGGTTTTCTGAT 59.299 39.130 0.00 0.00 40.59 2.90
150 151 4.160252 ACAGTTTGTGCTGGTTTTCTGATT 59.840 37.500 0.00 0.00 40.59 2.57
151 152 4.505191 CAGTTTGTGCTGGTTTTCTGATTG 59.495 41.667 0.00 0.00 33.11 2.67
152 153 4.402155 AGTTTGTGCTGGTTTTCTGATTGA 59.598 37.500 0.00 0.00 0.00 2.57
153 154 4.998671 TTGTGCTGGTTTTCTGATTGAA 57.001 36.364 0.00 0.00 0.00 2.69
154 155 5.534207 TTGTGCTGGTTTTCTGATTGAAT 57.466 34.783 0.00 0.00 34.24 2.57
155 156 5.125100 TGTGCTGGTTTTCTGATTGAATC 57.875 39.130 0.00 0.00 34.24 2.52
156 157 4.583907 TGTGCTGGTTTTCTGATTGAATCA 59.416 37.500 7.73 7.73 37.76 2.57
157 158 5.244402 TGTGCTGGTTTTCTGATTGAATCAT 59.756 36.000 8.50 0.00 38.85 2.45
158 159 5.575606 GTGCTGGTTTTCTGATTGAATCATG 59.424 40.000 8.50 3.62 38.85 3.07
159 160 5.107133 GCTGGTTTTCTGATTGAATCATGG 58.893 41.667 8.50 0.00 38.85 3.66
182 183 5.009010 GGACGGCAAATCATGATCATAGTTT 59.991 40.000 9.06 9.45 0.00 2.66
188 189 9.403110 GGCAAATCATGATCATAGTTTATTCAC 57.597 33.333 9.06 1.79 0.00 3.18
199 200 8.492673 TCATAGTTTATTCACCTAGCTGTTTG 57.507 34.615 0.00 0.00 0.00 2.93
200 201 8.100791 TCATAGTTTATTCACCTAGCTGTTTGT 58.899 33.333 0.00 0.00 0.00 2.83
202 203 6.062095 AGTTTATTCACCTAGCTGTTTGTGT 58.938 36.000 0.00 0.00 0.00 3.72
203 204 5.940192 TTATTCACCTAGCTGTTTGTGTG 57.060 39.130 0.00 0.00 0.00 3.82
212 231 1.270550 GCTGTTTGTGTGGGGAATCTG 59.729 52.381 0.00 0.00 0.00 2.90
231 250 2.880268 CTGCTGGTTGAACAGTGAATGA 59.120 45.455 0.00 0.00 40.59 2.57
251 270 3.006323 TGACTTTGGGCGCAAAATAATGT 59.994 39.130 26.44 20.45 0.00 2.71
262 281 4.244862 GCAAAATAATGTGAGTGGTTGGG 58.755 43.478 0.00 0.00 0.00 4.12
281 303 3.812156 GGTACCTTTTTGTTTGGCAGT 57.188 42.857 4.06 0.00 0.00 4.40
282 304 3.453424 GGTACCTTTTTGTTTGGCAGTG 58.547 45.455 4.06 0.00 0.00 3.66
283 305 3.131400 GGTACCTTTTTGTTTGGCAGTGA 59.869 43.478 4.06 0.00 0.00 3.41
284 306 3.971245 ACCTTTTTGTTTGGCAGTGAA 57.029 38.095 0.00 0.00 0.00 3.18
285 307 4.486125 ACCTTTTTGTTTGGCAGTGAAT 57.514 36.364 0.00 0.00 0.00 2.57
286 308 4.441792 ACCTTTTTGTTTGGCAGTGAATC 58.558 39.130 0.00 0.00 0.00 2.52
287 309 4.081198 ACCTTTTTGTTTGGCAGTGAATCA 60.081 37.500 0.00 0.00 0.00 2.57
288 310 4.508861 CCTTTTTGTTTGGCAGTGAATCAG 59.491 41.667 0.00 0.00 0.00 2.90
289 311 4.998671 TTTTGTTTGGCAGTGAATCAGA 57.001 36.364 0.00 0.00 0.00 3.27
290 312 4.572985 TTTGTTTGGCAGTGAATCAGAG 57.427 40.909 0.00 0.00 0.00 3.35
291 313 3.490439 TGTTTGGCAGTGAATCAGAGA 57.510 42.857 0.00 0.00 0.00 3.10
292 314 3.819368 TGTTTGGCAGTGAATCAGAGAA 58.181 40.909 0.00 0.00 0.00 2.87
293 315 3.817084 TGTTTGGCAGTGAATCAGAGAAG 59.183 43.478 0.00 0.00 0.00 2.85
294 316 2.105006 TGGCAGTGAATCAGAGAAGC 57.895 50.000 0.00 0.00 0.00 3.86
295 317 1.348696 TGGCAGTGAATCAGAGAAGCA 59.651 47.619 0.00 0.00 0.00 3.91
296 318 2.224597 TGGCAGTGAATCAGAGAAGCAA 60.225 45.455 0.00 0.00 0.00 3.91
297 319 2.161211 GGCAGTGAATCAGAGAAGCAAC 59.839 50.000 0.00 0.00 0.00 4.17
298 320 3.072944 GCAGTGAATCAGAGAAGCAACT 58.927 45.455 0.00 0.00 0.00 3.16
299 321 4.248859 GCAGTGAATCAGAGAAGCAACTA 58.751 43.478 0.00 0.00 0.00 2.24
300 322 4.329528 GCAGTGAATCAGAGAAGCAACTAG 59.670 45.833 0.00 0.00 0.00 2.57
301 323 4.869297 CAGTGAATCAGAGAAGCAACTAGG 59.131 45.833 0.00 0.00 0.00 3.02
302 324 4.774726 AGTGAATCAGAGAAGCAACTAGGA 59.225 41.667 0.00 0.00 0.00 2.94
303 325 5.424895 AGTGAATCAGAGAAGCAACTAGGAT 59.575 40.000 0.00 0.00 0.00 3.24
304 326 5.752955 GTGAATCAGAGAAGCAACTAGGATC 59.247 44.000 0.00 0.00 0.00 3.36
308 330 3.862267 CAGAGAAGCAACTAGGATCAACG 59.138 47.826 0.00 0.00 0.00 4.10
315 337 3.600388 CAACTAGGATCAACGAAAGCCT 58.400 45.455 0.00 0.00 0.00 4.58
322 344 3.132467 GGATCAACGAAAGCCTAGTAGGT 59.868 47.826 17.69 1.97 37.80 3.08
323 345 4.382793 GGATCAACGAAAGCCTAGTAGGTT 60.383 45.833 17.69 9.04 37.80 3.50
333 357 7.254353 CGAAAGCCTAGTAGGTTAATAAGCAAC 60.254 40.741 17.69 0.00 37.80 4.17
410 437 1.843992 CAGCAGTTTCCACAAAGCAC 58.156 50.000 0.00 0.00 0.00 4.40
413 440 2.159198 AGCAGTTTCCACAAAGCACAAG 60.159 45.455 0.00 0.00 0.00 3.16
452 480 3.074412 CTCCATTTAGCAACTCACGGTT 58.926 45.455 0.00 0.00 38.93 4.44
453 481 3.071479 TCCATTTAGCAACTCACGGTTC 58.929 45.455 0.00 0.00 35.74 3.62
454 482 2.811431 CCATTTAGCAACTCACGGTTCA 59.189 45.455 0.00 0.00 35.74 3.18
455 483 3.120199 CCATTTAGCAACTCACGGTTCAG 60.120 47.826 0.00 0.00 35.74 3.02
457 485 2.433868 TAGCAACTCACGGTTCAGAC 57.566 50.000 0.00 0.00 35.74 3.51
458 486 0.464036 AGCAACTCACGGTTCAGACA 59.536 50.000 0.00 0.00 35.74 3.41
459 487 0.582005 GCAACTCACGGTTCAGACAC 59.418 55.000 0.00 0.00 35.74 3.67
460 488 1.806623 GCAACTCACGGTTCAGACACT 60.807 52.381 0.00 0.00 35.74 3.55
461 489 2.545113 GCAACTCACGGTTCAGACACTA 60.545 50.000 0.00 0.00 35.74 2.74
462 490 3.713288 CAACTCACGGTTCAGACACTAA 58.287 45.455 0.00 0.00 35.74 2.24
489 517 3.305398 AGAGAAAAGACTGTACGCTGG 57.695 47.619 0.00 0.00 0.00 4.85
494 522 5.790593 AGAAAAGACTGTACGCTGGAATTA 58.209 37.500 0.00 0.00 0.00 1.40
495 523 5.638234 AGAAAAGACTGTACGCTGGAATTAC 59.362 40.000 0.00 0.00 0.00 1.89
502 530 6.331061 ACTGTACGCTGGAATTACTTTCTAG 58.669 40.000 0.00 0.00 43.75 2.43
504 532 7.121759 ACTGTACGCTGGAATTACTTTCTAGTA 59.878 37.037 0.00 0.00 43.06 1.82
505 533 7.253422 TGTACGCTGGAATTACTTTCTAGTAC 58.747 38.462 0.00 0.00 43.06 2.73
506 534 6.276832 ACGCTGGAATTACTTTCTAGTACA 57.723 37.500 0.00 0.00 43.06 2.90
507 535 6.875076 ACGCTGGAATTACTTTCTAGTACAT 58.125 36.000 0.00 0.00 43.06 2.29
510 538 7.277981 CGCTGGAATTACTTTCTAGTACATTGT 59.722 37.037 0.00 0.00 43.06 2.71
511 539 8.947115 GCTGGAATTACTTTCTAGTACATTGTT 58.053 33.333 0.00 0.00 43.06 2.83
514 542 9.556030 GGAATTACTTTCTAGTACATTGTTTGC 57.444 33.333 0.00 0.00 36.61 3.68
519 547 8.801715 ACTTTCTAGTACATTGTTTGCATTTG 57.198 30.769 0.00 0.00 31.21 2.32
520 548 7.382218 ACTTTCTAGTACATTGTTTGCATTTGC 59.618 33.333 0.00 0.00 35.51 3.68
521 549 6.573664 TCTAGTACATTGTTTGCATTTGCT 57.426 33.333 3.94 0.00 42.66 3.91
522 550 7.680442 TCTAGTACATTGTTTGCATTTGCTA 57.320 32.000 3.94 0.00 42.66 3.49
538 566 2.047061 TGCTACAGGTCACCTTCTGTT 58.953 47.619 0.00 0.00 43.19 3.16
539 567 3.236047 TGCTACAGGTCACCTTCTGTTA 58.764 45.455 0.00 0.00 43.19 2.41
540 568 3.644265 TGCTACAGGTCACCTTCTGTTAA 59.356 43.478 0.00 0.00 43.19 2.01
541 569 3.995048 GCTACAGGTCACCTTCTGTTAAC 59.005 47.826 0.00 0.00 43.19 2.01
543 571 2.224209 ACAGGTCACCTTCTGTTAACGG 60.224 50.000 8.22 8.22 40.91 4.44
544 572 1.346722 AGGTCACCTTCTGTTAACGGG 59.653 52.381 14.44 9.37 0.00 5.28
545 573 1.154197 GTCACCTTCTGTTAACGGGC 58.846 55.000 14.44 0.00 0.00 6.13
546 574 0.759959 TCACCTTCTGTTAACGGGCA 59.240 50.000 14.44 1.23 0.00 5.36
547 575 1.349688 TCACCTTCTGTTAACGGGCAT 59.650 47.619 14.44 0.00 0.00 4.40
548 576 1.468520 CACCTTCTGTTAACGGGCATG 59.531 52.381 14.44 4.86 0.00 4.06
550 578 2.159382 CCTTCTGTTAACGGGCATGTT 58.841 47.619 14.44 0.07 35.86 2.71
551 579 3.244630 ACCTTCTGTTAACGGGCATGTTA 60.245 43.478 14.44 0.00 33.32 2.41
552 580 3.945285 CCTTCTGTTAACGGGCATGTTAT 59.055 43.478 14.44 0.00 34.50 1.89
553 581 4.398044 CCTTCTGTTAACGGGCATGTTATT 59.602 41.667 14.44 0.00 34.50 1.40
554 582 5.105917 CCTTCTGTTAACGGGCATGTTATTT 60.106 40.000 14.44 0.00 34.50 1.40
555 583 5.968528 TCTGTTAACGGGCATGTTATTTT 57.031 34.783 14.44 0.00 34.50 1.82
556 584 5.704888 TCTGTTAACGGGCATGTTATTTTG 58.295 37.500 14.44 0.00 34.50 2.44
557 585 4.238514 TGTTAACGGGCATGTTATTTTGC 58.761 39.130 0.26 0.00 34.50 3.68
558 586 4.238514 GTTAACGGGCATGTTATTTTGCA 58.761 39.130 0.00 0.00 40.66 4.08
559 587 3.608316 AACGGGCATGTTATTTTGCAT 57.392 38.095 0.00 0.00 40.66 3.96
560 588 2.891112 ACGGGCATGTTATTTTGCATG 58.109 42.857 0.00 0.00 43.71 4.06
561 589 2.203401 CGGGCATGTTATTTTGCATGG 58.797 47.619 6.65 0.00 41.82 3.66
562 590 2.418471 CGGGCATGTTATTTTGCATGGT 60.418 45.455 6.65 0.00 41.82 3.55
563 591 3.608796 GGGCATGTTATTTTGCATGGTT 58.391 40.909 6.65 0.00 41.82 3.67
564 592 3.622612 GGGCATGTTATTTTGCATGGTTC 59.377 43.478 6.65 0.00 41.82 3.62
565 593 4.506758 GGCATGTTATTTTGCATGGTTCT 58.493 39.130 6.65 0.00 41.82 3.01
566 594 4.330620 GGCATGTTATTTTGCATGGTTCTG 59.669 41.667 6.65 0.00 41.82 3.02
567 595 4.931002 GCATGTTATTTTGCATGGTTCTGT 59.069 37.500 6.65 0.00 41.82 3.41
568 596 6.098679 GCATGTTATTTTGCATGGTTCTGTA 58.901 36.000 6.65 0.00 41.82 2.74
569 597 6.254157 GCATGTTATTTTGCATGGTTCTGTAG 59.746 38.462 6.65 0.00 41.82 2.74
570 598 6.892658 TGTTATTTTGCATGGTTCTGTAGT 57.107 33.333 0.00 0.00 0.00 2.73
571 599 6.676950 TGTTATTTTGCATGGTTCTGTAGTG 58.323 36.000 0.00 0.00 0.00 2.74
572 600 4.789012 ATTTTGCATGGTTCTGTAGTGG 57.211 40.909 0.00 0.00 0.00 4.00
573 601 3.500448 TTTGCATGGTTCTGTAGTGGA 57.500 42.857 0.00 0.00 0.00 4.02
574 602 2.768253 TGCATGGTTCTGTAGTGGAG 57.232 50.000 0.00 0.00 0.00 3.86
575 603 1.977854 TGCATGGTTCTGTAGTGGAGT 59.022 47.619 0.00 0.00 0.00 3.85
576 604 2.371841 TGCATGGTTCTGTAGTGGAGTT 59.628 45.455 0.00 0.00 0.00 3.01
577 605 2.744202 GCATGGTTCTGTAGTGGAGTTG 59.256 50.000 0.00 0.00 0.00 3.16
578 606 3.807209 GCATGGTTCTGTAGTGGAGTTGT 60.807 47.826 0.00 0.00 0.00 3.32
579 607 3.746045 TGGTTCTGTAGTGGAGTTGTC 57.254 47.619 0.00 0.00 0.00 3.18
580 608 3.035363 TGGTTCTGTAGTGGAGTTGTCA 58.965 45.455 0.00 0.00 0.00 3.58
581 609 3.646162 TGGTTCTGTAGTGGAGTTGTCAT 59.354 43.478 0.00 0.00 0.00 3.06
582 610 4.102524 TGGTTCTGTAGTGGAGTTGTCATT 59.897 41.667 0.00 0.00 0.00 2.57
583 611 4.691216 GGTTCTGTAGTGGAGTTGTCATTC 59.309 45.833 0.00 0.00 0.00 2.67
584 612 5.511545 GGTTCTGTAGTGGAGTTGTCATTCT 60.512 44.000 0.00 0.00 0.00 2.40
585 613 6.295123 GGTTCTGTAGTGGAGTTGTCATTCTA 60.295 42.308 0.00 0.00 0.00 2.10
586 614 6.516739 TCTGTAGTGGAGTTGTCATTCTAG 57.483 41.667 0.00 0.00 0.00 2.43
587 615 6.010850 TCTGTAGTGGAGTTGTCATTCTAGT 58.989 40.000 0.00 0.00 0.00 2.57
588 616 6.025749 TGTAGTGGAGTTGTCATTCTAGTG 57.974 41.667 0.00 0.00 0.00 2.74
589 617 4.543590 AGTGGAGTTGTCATTCTAGTGG 57.456 45.455 0.00 0.00 0.00 4.00
590 618 3.904339 AGTGGAGTTGTCATTCTAGTGGT 59.096 43.478 0.00 0.00 0.00 4.16
591 619 3.997021 GTGGAGTTGTCATTCTAGTGGTG 59.003 47.826 0.00 0.00 0.00 4.17
592 620 3.901222 TGGAGTTGTCATTCTAGTGGTGA 59.099 43.478 0.00 0.00 0.00 4.02
593 621 4.532126 TGGAGTTGTCATTCTAGTGGTGAT 59.468 41.667 0.00 0.00 0.00 3.06
594 622 4.872691 GGAGTTGTCATTCTAGTGGTGATG 59.127 45.833 0.00 0.00 0.00 3.07
595 623 4.256920 AGTTGTCATTCTAGTGGTGATGC 58.743 43.478 0.00 0.00 0.00 3.91
596 624 3.979101 TGTCATTCTAGTGGTGATGCA 57.021 42.857 0.00 0.00 0.00 3.96
597 625 4.284829 TGTCATTCTAGTGGTGATGCAA 57.715 40.909 0.00 0.00 0.00 4.08
598 626 4.847198 TGTCATTCTAGTGGTGATGCAAT 58.153 39.130 0.00 0.00 0.00 3.56
599 627 4.877823 TGTCATTCTAGTGGTGATGCAATC 59.122 41.667 0.00 0.00 45.83 2.67
614 642 5.893687 GATGCAATCACCATACATGTTTCA 58.106 37.500 2.30 0.00 44.70 2.69
615 643 5.058149 TGCAATCACCATACATGTTTCAC 57.942 39.130 2.30 0.00 0.00 3.18
616 644 4.522022 TGCAATCACCATACATGTTTCACA 59.478 37.500 2.30 0.00 0.00 3.58
617 645 5.010415 TGCAATCACCATACATGTTTCACAA 59.990 36.000 2.30 0.00 0.00 3.33
618 646 5.574055 GCAATCACCATACATGTTTCACAAG 59.426 40.000 2.30 0.00 0.00 3.16
619 647 6.680810 CAATCACCATACATGTTTCACAAGT 58.319 36.000 2.30 0.00 34.19 3.16
620 648 7.574779 GCAATCACCATACATGTTTCACAAGTA 60.575 37.037 2.30 0.00 36.82 2.24
621 649 8.461222 CAATCACCATACATGTTTCACAAGTAT 58.539 33.333 2.30 0.07 41.84 2.12
622 650 7.994425 TCACCATACATGTTTCACAAGTATT 57.006 32.000 2.30 0.00 39.19 1.89
623 651 8.039603 TCACCATACATGTTTCACAAGTATTC 57.960 34.615 2.30 0.00 39.19 1.75
624 652 7.882791 TCACCATACATGTTTCACAAGTATTCT 59.117 33.333 2.30 0.00 39.19 2.40
625 653 7.964559 CACCATACATGTTTCACAAGTATTCTG 59.035 37.037 2.30 0.00 39.19 3.02
626 654 7.665559 ACCATACATGTTTCACAAGTATTCTGT 59.334 33.333 2.30 0.00 39.19 3.41
627 655 8.514594 CCATACATGTTTCACAAGTATTCTGTT 58.485 33.333 2.30 0.00 39.19 3.16
630 658 8.099364 ACATGTTTCACAAGTATTCTGTTAGG 57.901 34.615 0.00 0.00 27.09 2.69
631 659 7.174946 ACATGTTTCACAAGTATTCTGTTAGGG 59.825 37.037 0.00 0.00 27.09 3.53
632 660 6.833041 TGTTTCACAAGTATTCTGTTAGGGA 58.167 36.000 0.00 0.00 0.00 4.20
633 661 6.934645 TGTTTCACAAGTATTCTGTTAGGGAG 59.065 38.462 0.00 0.00 0.00 4.30
634 662 6.928348 TTCACAAGTATTCTGTTAGGGAGA 57.072 37.500 0.00 0.00 0.00 3.71
635 663 6.928348 TCACAAGTATTCTGTTAGGGAGAA 57.072 37.500 0.00 0.00 34.00 2.87
636 664 6.936279 TCACAAGTATTCTGTTAGGGAGAAG 58.064 40.000 0.00 0.00 33.01 2.85
637 665 6.724441 TCACAAGTATTCTGTTAGGGAGAAGA 59.276 38.462 0.00 0.00 33.01 2.87
638 666 7.400339 TCACAAGTATTCTGTTAGGGAGAAGAT 59.600 37.037 0.00 0.00 33.01 2.40
639 667 7.493971 CACAAGTATTCTGTTAGGGAGAAGATG 59.506 40.741 0.00 0.00 33.01 2.90
640 668 7.181125 ACAAGTATTCTGTTAGGGAGAAGATGT 59.819 37.037 0.00 0.00 33.01 3.06
641 669 7.741554 AGTATTCTGTTAGGGAGAAGATGTT 57.258 36.000 0.00 0.00 33.01 2.71
642 670 8.152023 AGTATTCTGTTAGGGAGAAGATGTTT 57.848 34.615 0.00 0.00 33.01 2.83
643 671 8.606830 AGTATTCTGTTAGGGAGAAGATGTTTT 58.393 33.333 0.00 0.00 33.01 2.43
644 672 9.232473 GTATTCTGTTAGGGAGAAGATGTTTTT 57.768 33.333 0.00 0.00 33.01 1.94
664 692 5.528043 TTTTTGTTGAGCCAGCTGATAAA 57.472 34.783 17.39 2.58 0.00 1.40
665 693 5.726980 TTTTGTTGAGCCAGCTGATAAAT 57.273 34.783 17.39 0.00 0.00 1.40
666 694 4.707030 TTGTTGAGCCAGCTGATAAATG 57.293 40.909 17.39 0.00 0.00 2.32
667 695 3.689347 TGTTGAGCCAGCTGATAAATGT 58.311 40.909 17.39 0.00 0.00 2.71
668 696 4.081406 TGTTGAGCCAGCTGATAAATGTT 58.919 39.130 17.39 0.00 0.00 2.71
669 697 4.523943 TGTTGAGCCAGCTGATAAATGTTT 59.476 37.500 17.39 0.00 0.00 2.83
670 698 5.010922 TGTTGAGCCAGCTGATAAATGTTTT 59.989 36.000 17.39 0.00 0.00 2.43
671 699 5.726980 TGAGCCAGCTGATAAATGTTTTT 57.273 34.783 17.39 0.00 0.00 1.94
704 732 9.233232 CGTTCCTATAAATACCATTTTTCTTGC 57.767 33.333 0.00 0.00 0.00 4.01
707 735 8.836413 TCCTATAAATACCATTTTTCTTGCTCG 58.164 33.333 0.00 0.00 0.00 5.03
708 736 8.076178 CCTATAAATACCATTTTTCTTGCTCGG 58.924 37.037 0.00 0.00 0.00 4.63
709 737 5.975693 AAATACCATTTTTCTTGCTCGGA 57.024 34.783 0.00 0.00 0.00 4.55
710 738 6.530019 AAATACCATTTTTCTTGCTCGGAT 57.470 33.333 0.00 0.00 0.00 4.18
711 739 3.855689 ACCATTTTTCTTGCTCGGATG 57.144 42.857 0.00 0.00 0.00 3.51
712 740 2.493278 ACCATTTTTCTTGCTCGGATGG 59.507 45.455 0.00 0.00 38.74 3.51
713 741 2.533266 CATTTTTCTTGCTCGGATGGC 58.467 47.619 0.00 0.00 0.00 4.40
714 742 1.614996 TTTTTCTTGCTCGGATGGCA 58.385 45.000 0.00 0.00 37.97 4.92
737 765 4.724798 ACCTATACCATGCTTGTAGGGAAA 59.275 41.667 15.49 0.00 36.96 3.13
743 771 3.826157 CCATGCTTGTAGGGAAAACAGAA 59.174 43.478 0.00 0.00 0.00 3.02
750 778 8.087750 TGCTTGTAGGGAAAACAGAAATAATTG 58.912 33.333 0.00 0.00 0.00 2.32
757 785 9.875691 AGGGAAAACAGAAATAATTGAATAAGC 57.124 29.630 0.00 0.00 0.00 3.09
791 819 3.399330 TGTCCAAAGTTTCCTAAGAGCG 58.601 45.455 0.00 0.00 0.00 5.03
799 827 3.827302 AGTTTCCTAAGAGCGTCTCTCAA 59.173 43.478 9.35 2.15 44.35 3.02
810 838 4.764172 AGCGTCTCTCAAAGAATAGCATT 58.236 39.130 0.00 0.00 35.21 3.56
816 844 7.405769 GTCTCTCAAAGAATAGCATTAGCAAC 58.594 38.462 0.00 0.00 38.50 4.17
817 845 7.279758 GTCTCTCAAAGAATAGCATTAGCAACT 59.720 37.037 0.00 0.00 38.50 3.16
818 846 7.279536 TCTCTCAAAGAATAGCATTAGCAACTG 59.720 37.037 0.00 0.00 45.49 3.16
819 847 6.881065 TCTCAAAGAATAGCATTAGCAACTGT 59.119 34.615 0.00 0.00 45.49 3.55
822 850 8.668353 TCAAAGAATAGCATTAGCAACTGTAAG 58.332 33.333 0.00 0.00 45.49 2.34
841 869 7.328277 TGTAAGTGTTTGCAACTCAAGTAAT 57.672 32.000 0.00 0.00 35.84 1.89
842 870 7.767261 TGTAAGTGTTTGCAACTCAAGTAATT 58.233 30.769 0.00 0.00 35.84 1.40
843 871 8.247562 TGTAAGTGTTTGCAACTCAAGTAATTT 58.752 29.630 0.00 0.00 35.84 1.82
845 873 8.856490 AAGTGTTTGCAACTCAAGTAATTTAG 57.144 30.769 0.00 0.00 35.84 1.85
847 875 8.850156 AGTGTTTGCAACTCAAGTAATTTAGAT 58.150 29.630 0.00 0.00 35.84 1.98
848 876 8.905702 GTGTTTGCAACTCAAGTAATTTAGATG 58.094 33.333 0.00 0.00 35.84 2.90
849 877 7.594758 TGTTTGCAACTCAAGTAATTTAGATGC 59.405 33.333 11.11 11.11 38.00 3.91
854 904 7.065085 GCAACTCAAGTAATTTAGATGCAGAGA 59.935 37.037 12.61 0.00 37.60 3.10
893 943 1.202486 TGTAAGGTAGCGTATGCAGCC 60.202 52.381 10.11 10.44 46.23 4.85
921 971 9.839817 TCAGATAGCACTATACTACTATGATCC 57.160 37.037 0.00 0.00 0.00 3.36
953 1003 8.015185 TGAATTACTAGAGGTACATGTAACCC 57.985 38.462 17.38 10.60 37.77 4.11
980 1030 1.064906 AGGGAATGCTCATCCTGTGTG 60.065 52.381 3.58 0.00 37.14 3.82
1050 1100 0.671781 CTAACCTGTCAAGCAGCGCT 60.672 55.000 2.64 2.64 43.71 5.92
1056 1106 0.532640 TGTCAAGCAGCGCTTCTGAA 60.533 50.000 11.16 0.00 46.77 3.02
1202 1312 7.223260 TGAGCAAGTTTCAAGATTCATCATT 57.777 32.000 0.00 0.00 0.00 2.57
1221 1331 9.246670 TCATCATTCTTATTGAACATTTGGTCT 57.753 29.630 0.00 0.00 37.52 3.85
1223 1333 9.865321 ATCATTCTTATTGAACATTTGGTCTTG 57.135 29.630 0.00 0.00 37.52 3.02
1225 1335 7.831691 TTCTTATTGAACATTTGGTCTTGGA 57.168 32.000 0.00 0.00 31.73 3.53
1230 1570 6.968263 TTGAACATTTGGTCTTGGACAATA 57.032 33.333 0.00 0.00 33.68 1.90
1243 1583 8.739972 GGTCTTGGACAATATTATGTTTTCTGT 58.260 33.333 0.14 0.00 33.68 3.41
1265 1605 8.514594 TCTGTTCATTTTCAATATCCAACTGTC 58.485 33.333 0.00 0.00 0.00 3.51
1274 1614 7.194112 TCAATATCCAACTGTCACCTGATTA 57.806 36.000 0.00 0.00 0.00 1.75
1286 1626 5.991606 TGTCACCTGATTAGACAGTTCAAAG 59.008 40.000 0.00 0.00 37.36 2.77
1290 1630 7.556275 TCACCTGATTAGACAGTTCAAAGTTTT 59.444 33.333 0.00 0.00 36.30 2.43
1294 1634 6.972328 TGATTAGACAGTTCAAAGTTTTGTGC 59.028 34.615 4.67 0.30 39.18 4.57
1316 1656 5.415701 TGCTATTTCCATGTCTTGTTCTTCC 59.584 40.000 0.00 0.00 0.00 3.46
1361 1701 5.677319 TTAACACTAACAGATCAGGAGGG 57.323 43.478 0.00 0.00 0.00 4.30
1473 1821 1.602888 CAAAGCAGTGCTCTGGGCT 60.603 57.895 20.03 6.37 38.25 5.19
1539 1890 7.557358 TCCTAACGTTGTATGGTCTACTGATTA 59.443 37.037 11.99 0.00 0.00 1.75
1540 1891 8.192774 CCTAACGTTGTATGGTCTACTGATTAA 58.807 37.037 11.99 0.00 0.00 1.40
1541 1892 7.823149 AACGTTGTATGGTCTACTGATTAAC 57.177 36.000 0.00 0.00 0.00 2.01
1542 1893 7.166691 ACGTTGTATGGTCTACTGATTAACT 57.833 36.000 0.00 0.00 0.00 2.24
1543 1894 7.033791 ACGTTGTATGGTCTACTGATTAACTG 58.966 38.462 0.00 0.00 0.00 3.16
1544 1895 7.033791 CGTTGTATGGTCTACTGATTAACTGT 58.966 38.462 0.00 0.00 35.06 3.55
1545 1896 7.009265 CGTTGTATGGTCTACTGATTAACTGTG 59.991 40.741 0.00 0.00 33.04 3.66
1546 1897 7.712204 TGTATGGTCTACTGATTAACTGTGA 57.288 36.000 0.00 0.00 33.04 3.58
1547 1898 8.129496 TGTATGGTCTACTGATTAACTGTGAA 57.871 34.615 0.00 0.00 33.04 3.18
1548 1899 8.758829 TGTATGGTCTACTGATTAACTGTGAAT 58.241 33.333 0.00 0.00 33.04 2.57
1549 1900 9.601217 GTATGGTCTACTGATTAACTGTGAATT 57.399 33.333 0.00 0.00 33.04 2.17
1552 1903 9.653287 TGGTCTACTGATTAACTGTGAATTAAG 57.347 33.333 0.00 0.00 33.04 1.85
1553 1904 9.654663 GGTCTACTGATTAACTGTGAATTAAGT 57.345 33.333 10.37 10.37 33.04 2.24
1557 1908 8.336801 ACTGATTAACTGTGAATTAAGTTCCC 57.663 34.615 4.42 0.00 37.74 3.97
1558 1909 8.164070 ACTGATTAACTGTGAATTAAGTTCCCT 58.836 33.333 4.42 0.00 37.74 4.20
1559 1910 9.667107 CTGATTAACTGTGAATTAAGTTCCCTA 57.333 33.333 4.42 0.00 37.74 3.53
1564 1915 8.990163 AACTGTGAATTAAGTTCCCTAAAGAA 57.010 30.769 0.00 0.00 35.91 2.52
1565 1916 8.990163 ACTGTGAATTAAGTTCCCTAAAGAAA 57.010 30.769 0.00 0.00 35.91 2.52
1566 1917 9.416284 ACTGTGAATTAAGTTCCCTAAAGAAAA 57.584 29.630 0.00 0.00 35.91 2.29
1645 1996 3.017442 GGCCAGGAGAATAGTTTGGTTC 58.983 50.000 0.00 0.00 0.00 3.62
1669 2021 5.849357 TTCGCGTGTGTTAATATTGACTT 57.151 34.783 5.77 0.00 0.00 3.01
1766 2239 7.133891 ACTGTTATCACTTGACAAATAGTGC 57.866 36.000 1.53 0.00 41.16 4.40
1770 2243 4.032960 TCACTTGACAAATAGTGCCCAT 57.967 40.909 1.53 0.00 41.16 4.00
1777 2250 5.754782 TGACAAATAGTGCCCATATGACTT 58.245 37.500 3.65 0.00 0.00 3.01
1778 2251 5.589855 TGACAAATAGTGCCCATATGACTTG 59.410 40.000 3.65 0.00 0.00 3.16
1808 2284 6.426937 GTCTACCTCTTGTAAATTGCAGACAA 59.573 38.462 5.72 5.72 40.87 3.18
1823 2299 4.935352 CAGACAATTTCTGTTTTCCCCA 57.065 40.909 8.59 0.00 46.12 4.96
1826 2302 6.624423 CAGACAATTTCTGTTTTCCCCATAG 58.376 40.000 8.59 0.00 46.12 2.23
1846 2322 9.429359 CCCATAGTGACATCTTACATCTTTATC 57.571 37.037 0.00 0.00 0.00 1.75
1868 2344 7.814264 ATCTGCACAAATATTCTTTCCCTAG 57.186 36.000 0.00 0.00 0.00 3.02
1892 2368 4.139786 CCCCTACATTCAATCATGTCAGG 58.860 47.826 0.00 0.00 38.40 3.86
1925 2401 2.364324 GCTCGGATTCCATACTGGTGTA 59.636 50.000 3.09 0.00 39.03 2.90
1936 2412 4.466370 CCATACTGGTGTAGTCCTTCAAGA 59.534 45.833 0.00 0.00 40.89 3.02
1939 2415 3.265791 CTGGTGTAGTCCTTCAAGATGC 58.734 50.000 0.00 0.00 0.00 3.91
1945 2421 3.498774 AGTCCTTCAAGATGCAACTGT 57.501 42.857 0.00 0.00 0.00 3.55
2008 2484 6.719365 AGCATATTTCTCGTAAATTGCAGAC 58.281 36.000 20.35 0.00 31.93 3.51
2014 2490 6.403333 TTCTCGTAAATTGCAGACACATAC 57.597 37.500 0.00 0.00 0.00 2.39
2018 2494 6.827641 TCGTAAATTGCAGACACATACTTTC 58.172 36.000 0.00 0.00 0.00 2.62
2020 2496 6.738200 CGTAAATTGCAGACACATACTTTCTG 59.262 38.462 0.00 0.00 39.89 3.02
2022 2498 6.639632 AATTGCAGACACATACTTTCTGTT 57.360 33.333 0.00 0.00 39.23 3.16
2023 2499 6.639632 ATTGCAGACACATACTTTCTGTTT 57.360 33.333 0.00 0.00 39.23 2.83
2024 2500 6.449635 TTGCAGACACATACTTTCTGTTTT 57.550 33.333 0.00 0.00 39.23 2.43
2025 2501 6.449635 TGCAGACACATACTTTCTGTTTTT 57.550 33.333 0.00 0.00 39.23 1.94
2081 2557 1.408683 GCTACCATTGTGGATCAGCCA 60.409 52.381 2.45 0.00 46.96 4.75
2214 2690 4.439305 CCAATTCACGTGGTTGATCATT 57.561 40.909 25.85 9.16 0.00 2.57
2225 2701 7.060979 CACGTGGTTGATCATTTTTATGTTCTG 59.939 37.037 7.95 0.00 0.00 3.02
2231 2707 9.844790 GTTGATCATTTTTATGTTCTGTGATGA 57.155 29.630 0.00 0.00 0.00 2.92
2251 2727 7.489113 GTGATGATAATTTGGAATGTGTTGGTC 59.511 37.037 0.00 0.00 0.00 4.02
2269 2745 6.014584 TGTTGGTCACATAGTAAGTCAGTGAT 60.015 38.462 0.00 0.00 40.80 3.06
2307 2783 9.778741 AGAAGACACTGTCAGTTATTAAATTGA 57.221 29.630 11.80 0.00 34.60 2.57
2310 2786 9.507329 AGACACTGTCAGTTATTAAATTGATGT 57.493 29.630 11.80 0.00 34.33 3.06
2311 2787 9.760660 GACACTGTCAGTTATTAAATTGATGTC 57.239 33.333 1.67 0.00 34.53 3.06
2312 2788 9.507329 ACACTGTCAGTTATTAAATTGATGTCT 57.493 29.630 1.67 0.00 34.33 3.41
2357 2836 5.055265 TCCCCTCACATGAAAAGTAACAA 57.945 39.130 0.00 0.00 0.00 2.83
2390 2970 3.958147 ACCAGAAAATCACGTCCCTTTTT 59.042 39.130 0.00 0.00 0.00 1.94
2450 3030 3.202097 TCGTGACTTCATTTGCTGACAA 58.798 40.909 0.00 0.00 32.17 3.18
2453 3033 5.468409 TCGTGACTTCATTTGCTGACAATTA 59.532 36.000 0.00 0.00 35.21 1.40
2466 3046 6.990798 TGCTGACAATTATTTTTCATGACCA 58.009 32.000 0.00 0.00 0.00 4.02
2538 3118 1.681166 GCATTGACAGTGGCTCAGGAT 60.681 52.381 0.00 0.00 0.00 3.24
2565 3145 4.850193 ACAATGCTGTCAAGGGGG 57.150 55.556 0.00 0.00 0.00 5.40
2739 3319 4.021229 TGGACGAGACATACCATGTTACT 58.979 43.478 0.00 0.00 45.03 2.24
2826 3406 1.216444 CAGCAGCTACTTCTCCGCA 59.784 57.895 0.00 0.00 0.00 5.69
2847 3427 1.620819 GGAGCTATGATGGTGTCCGAT 59.379 52.381 0.00 0.00 0.00 4.18
2915 3495 3.367395 GGCAGGCAGAATTAAGTGGAAAC 60.367 47.826 0.00 0.00 0.00 2.78
2920 3500 5.598417 AGGCAGAATTAAGTGGAAACAAACT 59.402 36.000 0.00 0.00 46.06 2.66
3128 3709 2.227388 GTGCAGAATTCAGTCAAGGTGG 59.773 50.000 8.44 0.00 0.00 4.61
3136 3717 0.813610 CAGTCAAGGTGGTCGTGCAA 60.814 55.000 0.00 0.00 0.00 4.08
3150 3731 1.322637 CGTGCAATCATGTCTCTGACG 59.677 52.381 0.00 0.00 34.95 4.35
3164 3745 5.106515 TGTCTCTGACGTTTCTGATACTCTG 60.107 44.000 0.00 0.00 34.95 3.35
3259 3840 0.107214 TTGAGGCCGACATTCCATCC 60.107 55.000 0.00 0.00 0.00 3.51
3262 3843 0.399949 AGGCCGACATTCCATCCCTA 60.400 55.000 0.00 0.00 0.00 3.53
3269 3850 1.837439 ACATTCCATCCCTAACGCAGA 59.163 47.619 0.00 0.00 0.00 4.26
3275 3856 2.103094 CCATCCCTAACGCAGATTCAGA 59.897 50.000 0.00 0.00 0.00 3.27
3309 3890 8.722480 TGAACCTAAATATCACAGATCAACAG 57.278 34.615 0.00 0.00 0.00 3.16
3316 3897 1.277273 TCACAGATCAACAGAGGCTGG 59.723 52.381 0.00 0.00 35.51 4.85
3339 3924 9.959721 CTGGGTACTAAATTTATATGGCTGTAT 57.040 33.333 0.00 0.00 0.00 2.29
3340 3925 9.733556 TGGGTACTAAATTTATATGGCTGTATG 57.266 33.333 0.00 0.00 0.00 2.39
3341 3926 9.734984 GGGTACTAAATTTATATGGCTGTATGT 57.265 33.333 0.00 0.00 0.00 2.29
3352 3937 9.710900 TTATATGGCTGTATGTATTCACTCTTG 57.289 33.333 0.00 0.00 0.00 3.02
3387 3972 6.471233 TTGACCTCATAGATCTACAACAGG 57.529 41.667 4.10 10.03 0.00 4.00
3423 4008 8.151596 GGAGGGAGAAAATTATTACTGTAGGAG 58.848 40.741 0.00 0.00 0.00 3.69
3502 4087 6.924060 ACACTGTACAAAGTAGAAGCAACTAG 59.076 38.462 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.189736 AGGCTAATTGAACTAGTGGATCACA 59.810 40.000 0.00 0.00 36.74 3.58
1 2 5.525378 CAGGCTAATTGAACTAGTGGATCAC 59.475 44.000 0.00 0.00 34.10 3.06
2 3 5.189736 ACAGGCTAATTGAACTAGTGGATCA 59.810 40.000 0.00 0.00 0.00 2.92
3 4 5.525378 CACAGGCTAATTGAACTAGTGGATC 59.475 44.000 0.00 0.00 0.00 3.36
4 5 5.431765 CACAGGCTAATTGAACTAGTGGAT 58.568 41.667 0.00 0.00 0.00 3.41
5 6 4.832248 CACAGGCTAATTGAACTAGTGGA 58.168 43.478 0.00 0.00 0.00 4.02
6 7 3.375299 GCACAGGCTAATTGAACTAGTGG 59.625 47.826 0.00 0.00 36.96 4.00
7 8 4.606457 GCACAGGCTAATTGAACTAGTG 57.394 45.455 0.00 0.00 36.96 2.74
22 23 3.538634 TGAATGAGATCAGAGCACAGG 57.461 47.619 0.00 0.00 0.00 4.00
43 44 5.312120 TCTGAACTAGAATCGGACAAGAC 57.688 43.478 0.00 0.00 30.84 3.01
44 45 6.071334 ACAATCTGAACTAGAATCGGACAAGA 60.071 38.462 12.08 3.18 39.30 3.02
57 58 6.095021 ACATGCGAGTAGTACAATCTGAACTA 59.905 38.462 2.52 0.00 0.00 2.24
58 59 5.105716 ACATGCGAGTAGTACAATCTGAACT 60.106 40.000 2.52 0.00 0.00 3.01
59 60 5.103000 ACATGCGAGTAGTACAATCTGAAC 58.897 41.667 2.52 0.00 0.00 3.18
61 62 4.983671 ACATGCGAGTAGTACAATCTGA 57.016 40.909 2.52 0.00 0.00 3.27
73 74 1.854743 CGATGATCGAAACATGCGAGT 59.145 47.619 9.62 0.00 43.74 4.18
76 77 0.715959 CGCGATGATCGAAACATGCG 60.716 55.000 20.25 22.67 43.74 4.73
78 79 1.394712 CGACGCGATGATCGAAACATG 60.395 52.381 20.25 2.84 43.74 3.21
83 84 1.585261 CACCGACGCGATGATCGAA 60.585 57.895 20.25 0.00 43.74 3.71
84 85 1.430707 TACACCGACGCGATGATCGA 61.431 55.000 20.25 0.00 43.74 3.59
85 86 0.385598 ATACACCGACGCGATGATCG 60.386 55.000 15.93 11.02 43.89 3.69
86 87 1.053048 CATACACCGACGCGATGATC 58.947 55.000 15.93 0.00 0.00 2.92
87 88 0.384309 ACATACACCGACGCGATGAT 59.616 50.000 15.93 0.00 0.00 2.45
88 89 0.524604 CACATACACCGACGCGATGA 60.525 55.000 15.93 0.00 0.00 2.92
89 90 1.917212 CACATACACCGACGCGATG 59.083 57.895 15.93 6.64 0.00 3.84
92 93 3.897502 CGCACATACACCGACGCG 61.898 66.667 3.53 3.53 36.47 6.01
93 94 2.870667 TACCGCACATACACCGACGC 62.871 60.000 0.00 0.00 0.00 5.19
95 96 1.205657 CATACCGCACATACACCGAC 58.794 55.000 0.00 0.00 0.00 4.79
96 97 0.528901 GCATACCGCACATACACCGA 60.529 55.000 0.00 0.00 41.79 4.69
97 98 1.931551 GCATACCGCACATACACCG 59.068 57.895 0.00 0.00 41.79 4.94
109 110 3.251479 TGTCACACAGAGATGCATACC 57.749 47.619 0.00 0.00 0.00 2.73
122 123 1.094785 ACCAGCACAAACTGTCACAC 58.905 50.000 0.00 0.00 35.83 3.82
124 125 2.939460 AAACCAGCACAAACTGTCAC 57.061 45.000 0.00 0.00 35.83 3.67
126 127 3.128589 TCAGAAAACCAGCACAAACTGTC 59.871 43.478 0.00 0.00 35.83 3.51
127 128 3.088532 TCAGAAAACCAGCACAAACTGT 58.911 40.909 0.00 0.00 35.83 3.55
128 129 3.781079 TCAGAAAACCAGCACAAACTG 57.219 42.857 0.00 0.00 37.42 3.16
129 130 4.402155 TCAATCAGAAAACCAGCACAAACT 59.598 37.500 0.00 0.00 0.00 2.66
132 133 4.998671 TTCAATCAGAAAACCAGCACAA 57.001 36.364 0.00 0.00 32.05 3.33
134 135 5.125100 TGATTCAATCAGAAAACCAGCAC 57.875 39.130 0.00 0.00 40.22 4.40
135 136 5.336929 CCATGATTCAATCAGAAAACCAGCA 60.337 40.000 6.19 0.00 43.53 4.41
136 137 5.105635 TCCATGATTCAATCAGAAAACCAGC 60.106 40.000 6.19 0.00 43.53 4.85
137 138 6.327934 GTCCATGATTCAATCAGAAAACCAG 58.672 40.000 6.19 0.00 43.53 4.00
139 140 5.335127 CGTCCATGATTCAATCAGAAAACC 58.665 41.667 6.19 0.00 43.53 3.27
141 142 4.142403 GCCGTCCATGATTCAATCAGAAAA 60.142 41.667 6.19 0.00 43.53 2.29
142 143 3.378112 GCCGTCCATGATTCAATCAGAAA 59.622 43.478 6.19 0.00 43.53 2.52
143 144 2.945008 GCCGTCCATGATTCAATCAGAA 59.055 45.455 6.19 0.00 43.53 3.02
145 146 2.291365 TGCCGTCCATGATTCAATCAG 58.709 47.619 6.19 0.00 43.53 2.90
146 147 2.416680 TGCCGTCCATGATTCAATCA 57.583 45.000 1.59 1.59 44.55 2.57
147 148 3.781079 TTTGCCGTCCATGATTCAATC 57.219 42.857 0.00 0.00 0.00 2.67
148 149 3.700539 TGATTTGCCGTCCATGATTCAAT 59.299 39.130 0.00 0.00 0.00 2.57
149 150 3.087781 TGATTTGCCGTCCATGATTCAA 58.912 40.909 0.00 0.00 0.00 2.69
150 151 2.720915 TGATTTGCCGTCCATGATTCA 58.279 42.857 0.00 0.00 0.00 2.57
151 152 3.316029 TCATGATTTGCCGTCCATGATTC 59.684 43.478 0.00 0.00 40.04 2.52
152 153 3.289836 TCATGATTTGCCGTCCATGATT 58.710 40.909 0.00 0.00 40.04 2.57
153 154 2.934887 TCATGATTTGCCGTCCATGAT 58.065 42.857 0.00 0.00 40.04 2.45
154 155 2.416680 TCATGATTTGCCGTCCATGA 57.583 45.000 0.00 0.00 41.90 3.07
155 156 2.619646 TGATCATGATTTGCCGTCCATG 59.380 45.455 10.14 0.00 38.12 3.66
156 157 2.934887 TGATCATGATTTGCCGTCCAT 58.065 42.857 10.14 0.00 0.00 3.41
157 158 2.416680 TGATCATGATTTGCCGTCCA 57.583 45.000 10.14 0.00 0.00 4.02
158 159 4.067896 ACTATGATCATGATTTGCCGTCC 58.932 43.478 18.72 0.00 0.00 4.79
159 160 5.679734 AACTATGATCATGATTTGCCGTC 57.320 39.130 18.72 0.00 0.00 4.79
182 183 4.323417 CCACACAAACAGCTAGGTGAATA 58.677 43.478 27.87 0.00 35.33 1.75
188 189 0.400213 TCCCCACACAAACAGCTAGG 59.600 55.000 0.00 0.00 0.00 3.02
192 193 1.270550 CAGATTCCCCACACAAACAGC 59.729 52.381 0.00 0.00 0.00 4.40
199 200 0.251341 AACCAGCAGATTCCCCACAC 60.251 55.000 0.00 0.00 0.00 3.82
200 201 0.251297 CAACCAGCAGATTCCCCACA 60.251 55.000 0.00 0.00 0.00 4.17
202 203 0.776810 TTCAACCAGCAGATTCCCCA 59.223 50.000 0.00 0.00 0.00 4.96
203 204 1.177401 GTTCAACCAGCAGATTCCCC 58.823 55.000 0.00 0.00 0.00 4.81
212 231 2.880890 AGTCATTCACTGTTCAACCAGC 59.119 45.455 0.00 0.00 35.83 4.85
231 250 3.006323 TCACATTATTTTGCGCCCAAAGT 59.994 39.130 4.18 0.00 41.58 2.66
262 281 4.379339 TCACTGCCAAACAAAAAGGTAC 57.621 40.909 0.00 0.00 0.00 3.34
280 302 5.078411 TCCTAGTTGCTTCTCTGATTCAC 57.922 43.478 0.00 0.00 0.00 3.18
281 303 5.423290 TGATCCTAGTTGCTTCTCTGATTCA 59.577 40.000 0.00 0.00 0.00 2.57
282 304 5.911752 TGATCCTAGTTGCTTCTCTGATTC 58.088 41.667 0.00 0.00 0.00 2.52
283 305 5.946942 TGATCCTAGTTGCTTCTCTGATT 57.053 39.130 0.00 0.00 0.00 2.57
284 306 5.669477 GTTGATCCTAGTTGCTTCTCTGAT 58.331 41.667 0.00 0.00 0.00 2.90
285 307 4.380973 CGTTGATCCTAGTTGCTTCTCTGA 60.381 45.833 0.00 0.00 0.00 3.27
286 308 3.862267 CGTTGATCCTAGTTGCTTCTCTG 59.138 47.826 0.00 0.00 0.00 3.35
287 309 3.764434 TCGTTGATCCTAGTTGCTTCTCT 59.236 43.478 0.00 0.00 0.00 3.10
288 310 4.111375 TCGTTGATCCTAGTTGCTTCTC 57.889 45.455 0.00 0.00 0.00 2.87
289 311 4.537135 TTCGTTGATCCTAGTTGCTTCT 57.463 40.909 0.00 0.00 0.00 2.85
290 312 4.436183 GCTTTCGTTGATCCTAGTTGCTTC 60.436 45.833 0.00 0.00 0.00 3.86
291 313 3.437049 GCTTTCGTTGATCCTAGTTGCTT 59.563 43.478 0.00 0.00 0.00 3.91
292 314 3.003480 GCTTTCGTTGATCCTAGTTGCT 58.997 45.455 0.00 0.00 0.00 3.91
293 315 2.096013 GGCTTTCGTTGATCCTAGTTGC 59.904 50.000 0.00 0.00 0.00 4.17
294 316 3.600388 AGGCTTTCGTTGATCCTAGTTG 58.400 45.455 0.00 0.00 0.00 3.16
295 317 3.983044 AGGCTTTCGTTGATCCTAGTT 57.017 42.857 0.00 0.00 0.00 2.24
296 318 4.657436 CTAGGCTTTCGTTGATCCTAGT 57.343 45.455 0.00 0.00 40.74 2.57
298 320 4.583489 CCTACTAGGCTTTCGTTGATCCTA 59.417 45.833 0.00 0.00 0.00 2.94
299 321 3.385111 CCTACTAGGCTTTCGTTGATCCT 59.615 47.826 0.00 0.00 0.00 3.24
300 322 3.132467 ACCTACTAGGCTTTCGTTGATCC 59.868 47.826 1.55 0.00 39.63 3.36
301 323 4.388378 ACCTACTAGGCTTTCGTTGATC 57.612 45.455 1.55 0.00 39.63 2.92
302 324 4.820894 AACCTACTAGGCTTTCGTTGAT 57.179 40.909 1.55 0.00 39.63 2.57
303 325 5.726980 TTAACCTACTAGGCTTTCGTTGA 57.273 39.130 1.55 0.00 39.63 3.18
304 326 7.254353 GCTTATTAACCTACTAGGCTTTCGTTG 60.254 40.741 1.55 0.00 39.63 4.10
308 330 7.769507 AGTTGCTTATTAACCTACTAGGCTTTC 59.230 37.037 1.55 0.00 39.63 2.62
333 357 2.627699 TGGGCAAAAGGTTTTCAGCTAG 59.372 45.455 0.00 0.00 0.00 3.42
362 386 3.756434 TGTGCAATAGCTTTCCACCTAAC 59.244 43.478 0.00 0.00 42.74 2.34
396 423 1.134848 TGCCTTGTGCTTTGTGGAAAC 60.135 47.619 0.00 0.00 42.00 2.78
429 457 3.074412 CCGTGAGTTGCTAAATGGAGTT 58.926 45.455 0.00 0.00 0.00 3.01
430 458 2.038557 ACCGTGAGTTGCTAAATGGAGT 59.961 45.455 0.00 0.00 0.00 3.85
433 461 2.811431 TGAACCGTGAGTTGCTAAATGG 59.189 45.455 0.00 0.00 39.40 3.16
437 465 2.101750 TGTCTGAACCGTGAGTTGCTAA 59.898 45.455 0.00 0.00 39.40 3.09
444 472 5.924475 ATTTTTAGTGTCTGAACCGTGAG 57.076 39.130 0.00 0.00 0.00 3.51
461 489 8.837389 AGCGTACAGTCTTTTCTCTTTATTTTT 58.163 29.630 0.00 0.00 0.00 1.94
462 490 8.283291 CAGCGTACAGTCTTTTCTCTTTATTTT 58.717 33.333 0.00 0.00 0.00 1.82
480 508 6.276832 ACTAGAAAGTAATTCCAGCGTACA 57.723 37.500 0.00 0.00 38.94 2.90
494 522 7.382218 GCAAATGCAAACAATGTACTAGAAAGT 59.618 33.333 0.00 0.00 41.59 2.66
495 523 7.596248 AGCAAATGCAAACAATGTACTAGAAAG 59.404 33.333 8.28 0.00 45.16 2.62
502 530 5.345741 CCTGTAGCAAATGCAAACAATGTAC 59.654 40.000 8.28 0.00 45.16 2.90
504 532 4.202243 ACCTGTAGCAAATGCAAACAATGT 60.202 37.500 8.28 8.47 45.16 2.71
505 533 4.309099 ACCTGTAGCAAATGCAAACAATG 58.691 39.130 8.28 7.94 45.16 2.82
506 534 4.039004 TGACCTGTAGCAAATGCAAACAAT 59.961 37.500 8.28 3.27 45.16 2.71
507 535 3.382865 TGACCTGTAGCAAATGCAAACAA 59.617 39.130 8.28 0.00 45.16 2.83
510 538 2.295909 GGTGACCTGTAGCAAATGCAAA 59.704 45.455 8.28 0.00 45.16 3.68
511 539 1.885887 GGTGACCTGTAGCAAATGCAA 59.114 47.619 8.28 0.00 45.16 4.08
512 540 1.073763 AGGTGACCTGTAGCAAATGCA 59.926 47.619 1.77 0.00 36.44 3.96
513 541 1.826385 AGGTGACCTGTAGCAAATGC 58.174 50.000 1.77 0.00 34.86 3.56
514 542 3.438087 CAGAAGGTGACCTGTAGCAAATG 59.562 47.826 4.15 0.00 32.13 2.32
515 543 3.073062 ACAGAAGGTGACCTGTAGCAAAT 59.927 43.478 4.15 0.00 41.38 2.32
516 544 2.438021 ACAGAAGGTGACCTGTAGCAAA 59.562 45.455 4.15 0.00 41.38 3.68
517 545 2.047061 ACAGAAGGTGACCTGTAGCAA 58.953 47.619 4.15 0.00 41.38 3.91
518 546 1.717032 ACAGAAGGTGACCTGTAGCA 58.283 50.000 4.15 0.00 41.38 3.49
519 547 2.841442 AACAGAAGGTGACCTGTAGC 57.159 50.000 4.15 0.00 42.25 3.58
520 548 4.235360 CGTTAACAGAAGGTGACCTGTAG 58.765 47.826 4.15 0.00 42.25 2.74
521 549 3.006110 CCGTTAACAGAAGGTGACCTGTA 59.994 47.826 4.15 0.00 42.25 2.74
522 550 2.224209 CCGTTAACAGAAGGTGACCTGT 60.224 50.000 4.15 0.00 44.69 4.00
538 566 4.428209 CATGCAAAATAACATGCCCGTTA 58.572 39.130 0.00 0.00 41.87 3.18
539 567 3.260740 CATGCAAAATAACATGCCCGTT 58.739 40.909 0.00 0.00 41.87 4.44
540 568 2.418471 CCATGCAAAATAACATGCCCGT 60.418 45.455 0.00 0.00 41.88 5.28
541 569 2.203401 CCATGCAAAATAACATGCCCG 58.797 47.619 0.00 0.00 41.88 6.13
543 571 4.330620 CAGAACCATGCAAAATAACATGCC 59.669 41.667 0.00 0.00 41.88 4.40
544 572 4.931002 ACAGAACCATGCAAAATAACATGC 59.069 37.500 0.00 0.00 41.88 4.06
545 573 7.274033 CACTACAGAACCATGCAAAATAACATG 59.726 37.037 0.00 0.00 42.67 3.21
546 574 7.315142 CACTACAGAACCATGCAAAATAACAT 58.685 34.615 0.00 0.00 0.00 2.71
547 575 6.294453 CCACTACAGAACCATGCAAAATAACA 60.294 38.462 0.00 0.00 0.00 2.41
548 576 6.072175 TCCACTACAGAACCATGCAAAATAAC 60.072 38.462 0.00 0.00 0.00 1.89
550 578 5.565509 TCCACTACAGAACCATGCAAAATA 58.434 37.500 0.00 0.00 0.00 1.40
551 579 4.406456 TCCACTACAGAACCATGCAAAAT 58.594 39.130 0.00 0.00 0.00 1.82
552 580 3.820467 CTCCACTACAGAACCATGCAAAA 59.180 43.478 0.00 0.00 0.00 2.44
553 581 3.181445 ACTCCACTACAGAACCATGCAAA 60.181 43.478 0.00 0.00 0.00 3.68
554 582 2.371841 ACTCCACTACAGAACCATGCAA 59.628 45.455 0.00 0.00 0.00 4.08
555 583 1.977854 ACTCCACTACAGAACCATGCA 59.022 47.619 0.00 0.00 0.00 3.96
556 584 2.744202 CAACTCCACTACAGAACCATGC 59.256 50.000 0.00 0.00 0.00 4.06
557 585 3.997021 GACAACTCCACTACAGAACCATG 59.003 47.826 0.00 0.00 0.00 3.66
558 586 3.646162 TGACAACTCCACTACAGAACCAT 59.354 43.478 0.00 0.00 0.00 3.55
559 587 3.035363 TGACAACTCCACTACAGAACCA 58.965 45.455 0.00 0.00 0.00 3.67
560 588 3.746045 TGACAACTCCACTACAGAACC 57.254 47.619 0.00 0.00 0.00 3.62
561 589 5.542779 AGAATGACAACTCCACTACAGAAC 58.457 41.667 0.00 0.00 0.00 3.01
562 590 5.808366 AGAATGACAACTCCACTACAGAA 57.192 39.130 0.00 0.00 0.00 3.02
563 591 6.010850 ACTAGAATGACAACTCCACTACAGA 58.989 40.000 0.00 0.00 0.00 3.41
564 592 6.096036 CACTAGAATGACAACTCCACTACAG 58.904 44.000 0.00 0.00 0.00 2.74
565 593 5.047306 CCACTAGAATGACAACTCCACTACA 60.047 44.000 0.00 0.00 0.00 2.74
566 594 5.047235 ACCACTAGAATGACAACTCCACTAC 60.047 44.000 0.00 0.00 0.00 2.73
567 595 5.047306 CACCACTAGAATGACAACTCCACTA 60.047 44.000 0.00 0.00 0.00 2.74
568 596 3.904339 ACCACTAGAATGACAACTCCACT 59.096 43.478 0.00 0.00 0.00 4.00
569 597 3.997021 CACCACTAGAATGACAACTCCAC 59.003 47.826 0.00 0.00 0.00 4.02
570 598 3.901222 TCACCACTAGAATGACAACTCCA 59.099 43.478 0.00 0.00 0.00 3.86
571 599 4.537135 TCACCACTAGAATGACAACTCC 57.463 45.455 0.00 0.00 0.00 3.85
572 600 4.331168 GCATCACCACTAGAATGACAACTC 59.669 45.833 0.00 0.00 0.00 3.01
573 601 4.256920 GCATCACCACTAGAATGACAACT 58.743 43.478 0.00 0.00 0.00 3.16
574 602 4.002982 TGCATCACCACTAGAATGACAAC 58.997 43.478 0.00 0.00 0.00 3.32
575 603 4.284829 TGCATCACCACTAGAATGACAA 57.715 40.909 0.00 0.00 0.00 3.18
576 604 3.979101 TGCATCACCACTAGAATGACA 57.021 42.857 0.00 0.00 0.00 3.58
577 605 4.877823 TGATTGCATCACCACTAGAATGAC 59.122 41.667 0.00 0.00 33.59 3.06
578 606 5.101648 TGATTGCATCACCACTAGAATGA 57.898 39.130 0.00 0.00 33.59 2.57
590 618 5.418209 TGAAACATGTATGGTGATTGCATCA 59.582 36.000 0.00 0.00 39.94 3.07
591 619 5.745294 GTGAAACATGTATGGTGATTGCATC 59.255 40.000 0.00 0.00 36.32 3.91
592 620 5.185442 TGTGAAACATGTATGGTGATTGCAT 59.815 36.000 0.00 0.00 45.67 3.96
593 621 4.522022 TGTGAAACATGTATGGTGATTGCA 59.478 37.500 0.00 0.00 45.67 4.08
594 622 5.058149 TGTGAAACATGTATGGTGATTGC 57.942 39.130 0.00 0.00 45.67 3.56
609 637 7.159372 TCTCCCTAACAGAATACTTGTGAAAC 58.841 38.462 0.00 0.00 37.35 2.78
610 638 7.311092 TCTCCCTAACAGAATACTTGTGAAA 57.689 36.000 0.00 0.00 0.00 2.69
611 639 6.928348 TCTCCCTAACAGAATACTTGTGAA 57.072 37.500 0.00 0.00 0.00 3.18
612 640 6.724441 TCTTCTCCCTAACAGAATACTTGTGA 59.276 38.462 0.00 0.00 0.00 3.58
613 641 6.936279 TCTTCTCCCTAACAGAATACTTGTG 58.064 40.000 0.00 0.00 0.00 3.33
614 642 7.181125 ACATCTTCTCCCTAACAGAATACTTGT 59.819 37.037 0.00 0.00 0.00 3.16
615 643 7.560368 ACATCTTCTCCCTAACAGAATACTTG 58.440 38.462 0.00 0.00 0.00 3.16
616 644 7.741554 ACATCTTCTCCCTAACAGAATACTT 57.258 36.000 0.00 0.00 0.00 2.24
617 645 7.741554 AACATCTTCTCCCTAACAGAATACT 57.258 36.000 0.00 0.00 0.00 2.12
618 646 8.794335 AAAACATCTTCTCCCTAACAGAATAC 57.206 34.615 0.00 0.00 0.00 1.89
642 670 5.528043 TTTATCAGCTGGCTCAACAAAAA 57.472 34.783 15.13 0.00 0.00 1.94
643 671 5.010922 ACATTTATCAGCTGGCTCAACAAAA 59.989 36.000 15.13 3.91 0.00 2.44
644 672 4.523943 ACATTTATCAGCTGGCTCAACAAA 59.476 37.500 15.13 0.00 0.00 2.83
645 673 4.081406 ACATTTATCAGCTGGCTCAACAA 58.919 39.130 15.13 0.00 0.00 2.83
646 674 3.689347 ACATTTATCAGCTGGCTCAACA 58.311 40.909 15.13 0.00 0.00 3.33
647 675 4.708726 AACATTTATCAGCTGGCTCAAC 57.291 40.909 15.13 0.00 0.00 3.18
648 676 5.726980 AAAACATTTATCAGCTGGCTCAA 57.273 34.783 15.13 2.44 0.00 3.02
649 677 5.726980 AAAAACATTTATCAGCTGGCTCA 57.273 34.783 15.13 0.00 0.00 4.26
678 706 9.233232 GCAAGAAAAATGGTATTTATAGGAACG 57.767 33.333 0.00 0.00 0.00 3.95
681 709 8.836413 CGAGCAAGAAAAATGGTATTTATAGGA 58.164 33.333 0.00 0.00 0.00 2.94
682 710 8.076178 CCGAGCAAGAAAAATGGTATTTATAGG 58.924 37.037 0.00 0.00 0.00 2.57
683 711 8.836413 TCCGAGCAAGAAAAATGGTATTTATAG 58.164 33.333 0.00 0.00 0.00 1.31
684 712 8.740123 TCCGAGCAAGAAAAATGGTATTTATA 57.260 30.769 0.00 0.00 0.00 0.98
685 713 7.639113 TCCGAGCAAGAAAAATGGTATTTAT 57.361 32.000 0.00 0.00 0.00 1.40
686 714 7.416213 CCATCCGAGCAAGAAAAATGGTATTTA 60.416 37.037 0.00 0.00 0.00 1.40
687 715 5.975693 TCCGAGCAAGAAAAATGGTATTT 57.024 34.783 0.00 0.00 0.00 1.40
688 716 5.163519 CCATCCGAGCAAGAAAAATGGTATT 60.164 40.000 0.00 0.00 0.00 1.89
689 717 4.339247 CCATCCGAGCAAGAAAAATGGTAT 59.661 41.667 0.00 0.00 0.00 2.73
690 718 3.694072 CCATCCGAGCAAGAAAAATGGTA 59.306 43.478 0.00 0.00 0.00 3.25
691 719 2.493278 CCATCCGAGCAAGAAAAATGGT 59.507 45.455 0.00 0.00 0.00 3.55
692 720 2.736400 GCCATCCGAGCAAGAAAAATGG 60.736 50.000 0.00 0.00 36.19 3.16
693 721 2.094597 TGCCATCCGAGCAAGAAAAATG 60.095 45.455 0.00 0.00 37.28 2.32
694 722 2.094545 GTGCCATCCGAGCAAGAAAAAT 60.095 45.455 0.00 0.00 43.02 1.82
695 723 1.269448 GTGCCATCCGAGCAAGAAAAA 59.731 47.619 0.00 0.00 43.02 1.94
696 724 0.881118 GTGCCATCCGAGCAAGAAAA 59.119 50.000 0.00 0.00 43.02 2.29
697 725 0.960364 GGTGCCATCCGAGCAAGAAA 60.960 55.000 0.00 0.00 43.02 2.52
698 726 1.377202 GGTGCCATCCGAGCAAGAA 60.377 57.895 0.00 0.00 43.02 2.52
699 727 0.975556 TAGGTGCCATCCGAGCAAGA 60.976 55.000 0.00 0.00 43.02 3.02
700 728 0.107456 ATAGGTGCCATCCGAGCAAG 59.893 55.000 0.00 0.00 43.02 4.01
701 729 1.070134 GTATAGGTGCCATCCGAGCAA 59.930 52.381 0.00 0.00 43.02 3.91
702 730 0.679505 GTATAGGTGCCATCCGAGCA 59.320 55.000 0.00 0.00 38.08 4.26
703 731 0.037232 GGTATAGGTGCCATCCGAGC 60.037 60.000 0.00 0.00 0.00 5.03
704 732 1.338107 TGGTATAGGTGCCATCCGAG 58.662 55.000 0.00 0.00 34.96 4.63
705 733 1.623311 CATGGTATAGGTGCCATCCGA 59.377 52.381 0.00 0.00 46.42 4.55
706 734 1.945819 GCATGGTATAGGTGCCATCCG 60.946 57.143 0.00 0.00 46.42 4.18
707 735 1.352352 AGCATGGTATAGGTGCCATCC 59.648 52.381 0.00 0.00 46.42 3.51
708 736 2.816087 CAAGCATGGTATAGGTGCCATC 59.184 50.000 0.00 0.00 46.42 3.51
710 738 1.563879 ACAAGCATGGTATAGGTGCCA 59.436 47.619 0.00 0.00 44.59 4.92
711 739 2.348411 ACAAGCATGGTATAGGTGCC 57.652 50.000 0.00 0.00 39.62 5.01
712 740 3.403038 CCTACAAGCATGGTATAGGTGC 58.597 50.000 19.96 0.00 39.10 5.01
713 741 3.646162 TCCCTACAAGCATGGTATAGGTG 59.354 47.826 23.63 17.85 32.05 4.00
714 742 3.936461 TCCCTACAAGCATGGTATAGGT 58.064 45.455 23.63 12.77 32.05 3.08
750 778 9.638239 TTGGACATTCTGTTAATTTGCTTATTC 57.362 29.630 0.00 0.00 0.00 1.75
757 785 8.764287 GGAAACTTTGGACATTCTGTTAATTTG 58.236 33.333 0.00 0.00 0.00 2.32
775 803 4.281182 TGAGAGACGCTCTTAGGAAACTTT 59.719 41.667 7.75 0.00 41.35 2.66
778 806 3.851976 TGAGAGACGCTCTTAGGAAAC 57.148 47.619 7.75 0.00 41.35 2.78
781 809 3.687125 TCTTTGAGAGACGCTCTTAGGA 58.313 45.455 7.75 6.00 41.35 2.94
791 819 7.279758 AGTTGCTAATGCTATTCTTTGAGAGAC 59.720 37.037 0.00 0.00 40.48 3.36
799 827 7.607991 ACACTTACAGTTGCTAATGCTATTCTT 59.392 33.333 0.00 0.00 40.48 2.52
893 943 9.845740 ATCATAGTAGTATAGTGCTATCTGAGG 57.154 37.037 13.52 4.96 0.00 3.86
921 971 3.123804 ACCTCTAGTAATTCAATGCGCG 58.876 45.455 0.00 0.00 0.00 6.86
963 1013 3.829948 CAAACACACAGGATGAGCATTC 58.170 45.455 0.00 0.00 39.69 2.67
976 1026 2.833794 TCTGTAGGTCAGCAAACACAC 58.166 47.619 0.00 0.00 43.32 3.82
980 1030 4.937620 TCATGATTCTGTAGGTCAGCAAAC 59.062 41.667 0.00 0.00 43.32 2.93
1050 1100 8.859236 AGAACTCATGAAGATCATTTTCAGAA 57.141 30.769 0.00 0.00 37.91 3.02
1161 1271 2.344950 CTCAGCAGGTCTTCACATCAC 58.655 52.381 0.00 0.00 0.00 3.06
1168 1278 3.621953 ACTTGCTCAGCAGGTCTTC 57.378 52.632 8.98 0.00 45.43 2.87
1202 1312 6.775142 TGTCCAAGACCAAATGTTCAATAAGA 59.225 34.615 0.00 0.00 0.00 2.10
1216 1326 8.739039 CAGAAAACATAATATTGTCCAAGACCA 58.261 33.333 0.00 0.00 0.00 4.02
1243 1583 7.451255 AGGTGACAGTTGGATATTGAAAATGAA 59.549 33.333 0.00 0.00 0.00 2.57
1255 1595 4.532126 TGTCTAATCAGGTGACAGTTGGAT 59.468 41.667 0.00 0.00 36.03 3.41
1265 1605 6.867662 AACTTTGAACTGTCTAATCAGGTG 57.132 37.500 0.00 0.00 39.48 4.00
1274 1614 6.699575 ATAGCACAAAACTTTGAACTGTCT 57.300 33.333 9.12 2.72 40.55 3.41
1279 1619 7.224557 ACATGGAAATAGCACAAAACTTTGAAC 59.775 33.333 9.12 1.02 40.55 3.18
1286 1626 6.215845 ACAAGACATGGAAATAGCACAAAAC 58.784 36.000 0.00 0.00 0.00 2.43
1290 1630 5.316167 AGAACAAGACATGGAAATAGCACA 58.684 37.500 0.00 0.00 0.00 4.57
1294 1634 8.970859 ATAGGAAGAACAAGACATGGAAATAG 57.029 34.615 0.00 0.00 0.00 1.73
1361 1701 5.643777 AGTCACATAAGCAGTTGAACCATAC 59.356 40.000 0.00 0.00 0.00 2.39
1523 1874 9.601217 AATTCACAGTTAATCAGTAGACCATAC 57.399 33.333 0.00 0.00 0.00 2.39
1539 1890 8.990163 TTCTTTAGGGAACTTAATTCACAGTT 57.010 30.769 0.00 0.00 43.96 3.16
1540 1891 8.990163 TTTCTTTAGGGAACTTAATTCACAGT 57.010 30.769 3.71 0.00 43.96 3.55
1637 1988 1.202098 ACACACGCGAAAGAACCAAAC 60.202 47.619 15.93 0.00 0.00 2.93
1645 1996 5.854157 AGTCAATATTAACACACGCGAAAG 58.146 37.500 15.93 4.52 0.00 2.62
1669 2021 4.306391 TGAGATGATGGAATGTAGGGGAA 58.694 43.478 0.00 0.00 0.00 3.97
1721 2073 7.736893 ACAGTTACATCTTTAAGGACTTCACT 58.263 34.615 0.00 0.00 0.00 3.41
1777 2250 6.426937 GCAATTTACAAGAGGTAGACTGAACA 59.573 38.462 0.00 0.00 32.49 3.18
1778 2251 6.426937 TGCAATTTACAAGAGGTAGACTGAAC 59.573 38.462 0.00 0.00 32.49 3.18
1808 2284 5.640147 TGTCACTATGGGGAAAACAGAAAT 58.360 37.500 0.00 0.00 0.00 2.17
1823 2299 9.703892 GCAGATAAAGATGTAAGATGTCACTAT 57.296 33.333 0.00 0.00 0.00 2.12
1826 2302 7.278646 TGTGCAGATAAAGATGTAAGATGTCAC 59.721 37.037 0.00 0.00 0.00 3.67
1846 2322 6.038714 GGACTAGGGAAAGAATATTTGTGCAG 59.961 42.308 0.00 0.00 0.00 4.41
1848 2324 5.299531 GGGACTAGGGAAAGAATATTTGTGC 59.700 44.000 0.00 0.00 0.00 4.57
1860 2336 4.083080 TGAATGTAGGGGACTAGGGAAA 57.917 45.455 0.00 0.00 45.49 3.13
1862 2338 3.788116 TTGAATGTAGGGGACTAGGGA 57.212 47.619 0.00 0.00 45.49 4.20
1868 2344 4.780815 TGACATGATTGAATGTAGGGGAC 58.219 43.478 0.00 0.00 40.87 4.46
1892 2368 5.839621 TGGAATCCGAGCTAAACTATGTAC 58.160 41.667 0.00 0.00 0.00 2.90
1925 2401 3.498774 ACAGTTGCATCTTGAAGGACT 57.501 42.857 0.00 0.00 0.00 3.85
1945 2421 5.939764 AGCCACTATCTGTCAACTGATAA 57.060 39.130 9.94 0.00 36.69 1.75
1983 2459 6.848296 GTCTGCAATTTACGAGAAATATGCTC 59.152 38.462 20.40 0.00 33.87 4.26
1991 2467 6.163476 AGTATGTGTCTGCAATTTACGAGAA 58.837 36.000 0.00 0.00 0.00 2.87
1995 2471 6.738200 CAGAAAGTATGTGTCTGCAATTTACG 59.262 38.462 0.00 0.00 32.96 3.18
1997 2473 7.744087 ACAGAAAGTATGTGTCTGCAATTTA 57.256 32.000 0.00 0.00 42.09 1.40
2038 2514 5.368989 CCCCCTGTCAAGATATAAAGTGTC 58.631 45.833 0.00 0.00 0.00 3.67
2081 2557 1.134401 CCCCAACGAGATATGCACACT 60.134 52.381 0.00 0.00 0.00 3.55
2135 2611 1.071471 CTCGACCTGCCAAGTTGGT 59.929 57.895 22.85 2.87 40.46 3.67
2225 2701 7.322664 ACCAACACATTCCAAATTATCATCAC 58.677 34.615 0.00 0.00 0.00 3.06
2284 2760 9.507329 ACATCAATTTAATAACTGACAGTGTCT 57.493 29.630 23.29 6.78 33.15 3.41
2285 2761 9.760660 GACATCAATTTAATAACTGACAGTGTC 57.239 33.333 16.68 16.68 0.00 3.67
2286 2762 9.507329 AGACATCAATTTAATAACTGACAGTGT 57.493 29.630 9.33 0.00 0.00 3.55
2337 2816 5.530915 TCTGTTGTTACTTTTCATGTGAGGG 59.469 40.000 0.00 0.00 0.00 4.30
2357 2836 7.712797 ACGTGATTTTCTGGTTTTATTTCTGT 58.287 30.769 0.00 0.00 0.00 3.41
2411 2991 7.089538 AGTCACGATGATATTCAGATTAGCTG 58.910 38.462 0.00 0.00 46.31 4.24
2429 3009 2.832563 TGTCAGCAAATGAAGTCACGA 58.167 42.857 0.00 0.00 40.43 4.35
2431 3011 8.524870 AAATAATTGTCAGCAAATGAAGTCAC 57.475 30.769 0.00 0.00 40.43 3.67
2450 3030 9.260002 GTTCAAGTTGTGGTCATGAAAAATAAT 57.740 29.630 0.00 0.00 32.36 1.28
2453 3033 6.638610 TGTTCAAGTTGTGGTCATGAAAAAT 58.361 32.000 0.00 0.00 32.36 1.82
2462 3042 2.919228 AGTCCTGTTCAAGTTGTGGTC 58.081 47.619 2.11 0.57 0.00 4.02
2466 3046 4.497291 TTGGTAGTCCTGTTCAAGTTGT 57.503 40.909 2.11 0.00 34.23 3.32
2565 3145 2.194271 GCGTCCTTGCTCAGTATGTAC 58.806 52.381 0.00 0.00 37.40 2.90
2670 3250 2.203640 ACTCTGTCCGTCAGGCCA 60.204 61.111 5.01 0.00 43.76 5.36
2679 3259 2.125753 CCAGCGCTGACTCTGTCC 60.126 66.667 38.06 0.00 0.00 4.02
2739 3319 4.169271 ACGGTCTTGGTCGTCTCA 57.831 55.556 0.00 0.00 34.20 3.27
2826 3406 1.043816 CGGACACCATCATAGCTCCT 58.956 55.000 0.00 0.00 0.00 3.69
2915 3495 0.865769 CTGTTCGAACGGGGAGTTTG 59.134 55.000 26.35 4.03 44.35 2.93
3128 3709 2.346847 GTCAGAGACATGATTGCACGAC 59.653 50.000 0.00 0.00 32.09 4.34
3136 3717 4.790765 TCAGAAACGTCAGAGACATGAT 57.209 40.909 0.00 0.00 32.09 2.45
3150 3731 7.760340 ACTCGAATAAACCAGAGTATCAGAAAC 59.240 37.037 0.00 0.00 41.57 2.78
3259 3840 8.147642 AGAATTTTATCTGAATCTGCGTTAGG 57.852 34.615 0.00 0.00 0.00 2.69
3309 3890 6.374613 GCCATATAAATTTAGTACCCAGCCTC 59.625 42.308 3.94 0.00 0.00 4.70
3339 3924 7.581213 ATTTTGTTGGTCAAGAGTGAATACA 57.419 32.000 0.00 0.00 37.35 2.29
3340 3925 8.755018 CAAATTTTGTTGGTCAAGAGTGAATAC 58.245 33.333 0.78 0.00 37.35 1.89
3341 3926 8.690884 TCAAATTTTGTTGGTCAAGAGTGAATA 58.309 29.630 8.89 0.00 37.35 1.75
3342 3927 7.492344 GTCAAATTTTGTTGGTCAAGAGTGAAT 59.508 33.333 8.89 0.00 37.35 2.57
3352 3937 7.214467 TCTATGAGGTCAAATTTTGTTGGTC 57.786 36.000 8.89 3.65 0.00 4.02
3502 4087 2.744741 GGCTAAAGTTCTCCTGCTGTTC 59.255 50.000 0.00 0.00 0.00 3.18
3883 4474 1.743252 CTTCAAGTCCGAGCTGGCC 60.743 63.158 0.00 0.00 37.80 5.36
3886 4477 2.097038 CGCCTTCAAGTCCGAGCTG 61.097 63.158 0.00 0.00 0.00 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.