Multiple sequence alignment - TraesCS2D01G521800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G521800 chr2D 100.000 3645 0 0 1 3645 610405620 610401976 0.000000e+00 6732.0
1 TraesCS2D01G521800 chr2D 91.569 1791 119 20 953 2727 610378228 610376454 0.000000e+00 2442.0
2 TraesCS2D01G521800 chr2D 86.689 293 36 2 3220 3512 619938541 619938252 4.540000e-84 322.0
3 TraesCS2D01G521800 chr2D 83.286 353 25 19 561 896 610378706 610378371 9.900000e-76 294.0
4 TraesCS2D01G521800 chr2D 82.310 277 43 5 1 274 346077010 346077283 6.080000e-58 235.0
5 TraesCS2D01G521800 chr2D 78.868 265 50 3 11 274 354560422 354560681 1.350000e-39 174.0
6 TraesCS2D01G521800 chr2D 83.516 182 28 2 3001 3181 579754935 579754755 6.260000e-38 169.0
7 TraesCS2D01G521800 chr2A 92.506 1748 98 15 927 2652 743267038 743265302 0.000000e+00 2471.0
8 TraesCS2D01G521800 chr2A 91.221 467 28 8 2 462 743267752 743267293 1.110000e-174 623.0
9 TraesCS2D01G521800 chr2A 90.135 223 9 6 624 845 743267276 743267066 9.970000e-71 278.0
10 TraesCS2D01G521800 chr2A 82.909 275 45 2 1 274 457447542 457447269 2.810000e-61 246.0
11 TraesCS2D01G521800 chr2A 80.986 284 50 2 3236 3519 753679660 753679381 4.740000e-54 222.0
12 TraesCS2D01G521800 chr2A 78.113 265 53 3 11 274 473889712 473889972 2.910000e-36 163.0
13 TraesCS2D01G521800 chr2A 93.478 46 1 2 3567 3612 388485934 388485891 2.350000e-07 67.6
14 TraesCS2D01G521800 chr2A 95.349 43 1 1 3571 3613 592782276 592782235 2.350000e-07 67.6
15 TraesCS2D01G521800 chr5B 85.408 1775 211 32 971 2721 94048329 94050079 0.000000e+00 1799.0
16 TraesCS2D01G521800 chr5B 84.296 1662 212 30 1012 2651 94087240 94088874 0.000000e+00 1578.0
17 TraesCS2D01G521800 chr5B 90.933 386 27 6 1311 1696 687240836 687241213 2.510000e-141 512.0
18 TraesCS2D01G521800 chr5B 81.166 223 38 4 9 229 535445464 535445684 3.740000e-40 176.0
19 TraesCS2D01G521800 chr5B 81.026 195 37 0 2987 3181 491244356 491244162 4.870000e-34 156.0
20 TraesCS2D01G521800 chr5D 86.542 1657 182 29 1003 2649 88465055 88466680 0.000000e+00 1786.0
21 TraesCS2D01G521800 chr5D 85.030 1650 210 26 1012 2651 88469782 88471404 0.000000e+00 1644.0
22 TraesCS2D01G521800 chr5D 87.543 289 31 4 3226 3513 539226265 539225981 2.710000e-86 329.0
23 TraesCS2D01G521800 chr5D 76.619 556 80 21 2996 3507 9077151 9077700 1.000000e-65 261.0
24 TraesCS2D01G521800 chr5D 84.211 190 23 6 2996 3182 499087929 499087744 1.040000e-40 178.0
25 TraesCS2D01G521800 chr5D 95.349 43 1 1 3571 3613 322989675 322989634 2.350000e-07 67.6
26 TraesCS2D01G521800 chr5D 95.238 42 1 1 3571 3612 361654163 361654123 8.450000e-07 65.8
27 TraesCS2D01G521800 chr5D 95.238 42 1 1 3571 3612 537752427 537752387 8.450000e-07 65.8
28 TraesCS2D01G521800 chr2B 91.054 1319 89 16 953 2260 745769324 745768024 0.000000e+00 1755.0
29 TraesCS2D01G521800 chr2B 89.644 618 48 10 1 604 745770532 745769917 0.000000e+00 773.0
30 TraesCS2D01G521800 chr2B 85.106 611 90 1 2020 2630 41473333 41472724 1.110000e-174 623.0
31 TraesCS2D01G521800 chr2B 83.905 379 55 3 3215 3588 745727274 745726897 1.240000e-94 357.0
32 TraesCS2D01G521800 chr2B 77.863 262 51 6 2937 3192 25344173 25343913 4.870000e-34 156.0
33 TraesCS2D01G521800 chr2B 97.015 67 2 0 619 685 745769656 745769590 2.970000e-21 113.0
34 TraesCS2D01G521800 chr5A 84.425 1618 218 24 1046 2651 82300001 82301596 0.000000e+00 1561.0
35 TraesCS2D01G521800 chr6D 76.452 1550 279 53 997 2520 77623638 77625127 0.000000e+00 761.0
36 TraesCS2D01G521800 chr6D 85.185 297 41 2 3215 3511 304688833 304688540 5.920000e-78 302.0
37 TraesCS2D01G521800 chr7A 81.132 954 114 34 1041 1978 193686507 193685604 0.000000e+00 704.0
38 TraesCS2D01G521800 chr7A 85.099 302 40 5 3212 3511 528338890 528339188 1.640000e-78 303.0
39 TraesCS2D01G521800 chr1A 86.042 566 77 2 2020 2584 590766821 590766257 1.120000e-169 606.0
40 TraesCS2D01G521800 chr1A 77.233 571 81 18 2986 3510 572682221 572681654 4.610000e-74 289.0
41 TraesCS2D01G521800 chr1A 81.560 282 49 3 3226 3507 39898835 39899113 2.830000e-56 230.0
42 TraesCS2D01G521800 chr1A 95.238 42 1 1 3571 3612 53859380 53859420 8.450000e-07 65.8
43 TraesCS2D01G521800 chr1A 95.238 42 1 1 3571 3612 557879329 557879289 8.450000e-07 65.8
44 TraesCS2D01G521800 chr3D 77.778 549 95 14 2986 3510 610077093 610076548 2.730000e-81 313.0
45 TraesCS2D01G521800 chr3D 76.572 636 101 30 2916 3507 514644653 514645284 4.570000e-79 305.0
46 TraesCS2D01G521800 chr6A 86.063 287 40 0 3221 3507 540151442 540151728 3.530000e-80 309.0
47 TraesCS2D01G521800 chr6A 86.385 213 28 1 1071 1283 579369 579580 7.870000e-57 231.0
48 TraesCS2D01G521800 chr7D 85.666 293 40 2 3216 3507 251355144 251354853 1.270000e-79 307.0
49 TraesCS2D01G521800 chr7D 85.567 291 42 0 3220 3510 632121122 632120832 4.570000e-79 305.0
50 TraesCS2D01G521800 chr7D 76.268 611 95 20 2944 3507 593250398 593251005 2.770000e-71 279.0
51 TraesCS2D01G521800 chr7D 95.349 43 1 1 3571 3613 425045272 425045313 2.350000e-07 67.6
52 TraesCS2D01G521800 chr4D 76.708 571 85 17 2986 3511 458984981 458984414 1.290000e-69 274.0
53 TraesCS2D01G521800 chr4D 82.591 247 36 3 2937 3176 433088621 433088867 1.030000e-50 211.0
54 TraesCS2D01G521800 chr7B 75.559 626 95 35 2937 3511 594046361 594045743 4.670000e-64 255.0
55 TraesCS2D01G521800 chr3A 80.903 288 53 2 3221 3507 704026811 704027097 3.660000e-55 226.0
56 TraesCS2D01G521800 chr3A 81.423 253 36 8 2940 3182 693125058 693124807 2.870000e-46 196.0
57 TraesCS2D01G521800 chr3A 93.478 46 2 1 3567 3612 83775677 83775721 2.350000e-07 67.6
58 TraesCS2D01G521800 chr4B 74.530 585 101 22 2974 3513 88372944 88372363 1.030000e-50 211.0
59 TraesCS2D01G521800 chr4A 79.636 275 54 2 1 274 471724973 471725246 2.870000e-46 196.0
60 TraesCS2D01G521800 chr3B 80.365 219 39 2 2969 3186 444129528 444129313 2.910000e-36 163.0
61 TraesCS2D01G521800 chr1D 75.182 274 62 3 1 274 314778319 314778586 1.370000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G521800 chr2D 610401976 610405620 3644 True 6732.000000 6732 100.000000 1 3645 1 chr2D.!!$R2 3644
1 TraesCS2D01G521800 chr2D 610376454 610378706 2252 True 1368.000000 2442 87.427500 561 2727 2 chr2D.!!$R4 2166
2 TraesCS2D01G521800 chr2A 743265302 743267752 2450 True 1124.000000 2471 91.287333 2 2652 3 chr2A.!!$R5 2650
3 TraesCS2D01G521800 chr5B 94048329 94050079 1750 False 1799.000000 1799 85.408000 971 2721 1 chr5B.!!$F1 1750
4 TraesCS2D01G521800 chr5B 94087240 94088874 1634 False 1578.000000 1578 84.296000 1012 2651 1 chr5B.!!$F2 1639
5 TraesCS2D01G521800 chr5D 88465055 88471404 6349 False 1715.000000 1786 85.786000 1003 2651 2 chr5D.!!$F2 1648
6 TraesCS2D01G521800 chr5D 9077151 9077700 549 False 261.000000 261 76.619000 2996 3507 1 chr5D.!!$F1 511
7 TraesCS2D01G521800 chr2B 745768024 745770532 2508 True 880.333333 1755 92.571000 1 2260 3 chr2B.!!$R4 2259
8 TraesCS2D01G521800 chr2B 41472724 41473333 609 True 623.000000 623 85.106000 2020 2630 1 chr2B.!!$R2 610
9 TraesCS2D01G521800 chr5A 82300001 82301596 1595 False 1561.000000 1561 84.425000 1046 2651 1 chr5A.!!$F1 1605
10 TraesCS2D01G521800 chr6D 77623638 77625127 1489 False 761.000000 761 76.452000 997 2520 1 chr6D.!!$F1 1523
11 TraesCS2D01G521800 chr7A 193685604 193686507 903 True 704.000000 704 81.132000 1041 1978 1 chr7A.!!$R1 937
12 TraesCS2D01G521800 chr1A 590766257 590766821 564 True 606.000000 606 86.042000 2020 2584 1 chr1A.!!$R3 564
13 TraesCS2D01G521800 chr1A 572681654 572682221 567 True 289.000000 289 77.233000 2986 3510 1 chr1A.!!$R2 524
14 TraesCS2D01G521800 chr3D 610076548 610077093 545 True 313.000000 313 77.778000 2986 3510 1 chr3D.!!$R1 524
15 TraesCS2D01G521800 chr3D 514644653 514645284 631 False 305.000000 305 76.572000 2916 3507 1 chr3D.!!$F1 591
16 TraesCS2D01G521800 chr7D 593250398 593251005 607 False 279.000000 279 76.268000 2944 3507 1 chr7D.!!$F2 563
17 TraesCS2D01G521800 chr4D 458984414 458984981 567 True 274.000000 274 76.708000 2986 3511 1 chr4D.!!$R1 525
18 TraesCS2D01G521800 chr7B 594045743 594046361 618 True 255.000000 255 75.559000 2937 3511 1 chr7B.!!$R1 574
19 TraesCS2D01G521800 chr4B 88372363 88372944 581 True 211.000000 211 74.530000 2974 3513 1 chr4B.!!$R1 539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
904 1204 0.322546 GCTTGGTCCACGATTCCCTT 60.323 55.0 0.0 0.0 0.0 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2792 3634 0.036671 GCTACTAACGCCACCAACCT 60.037 55.0 0.0 0.0 0.0 3.5 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
137 138 1.537202 GGATCGTGAGCCATTAATGCC 59.463 52.381 10.11 0.00 36.74 4.40
174 175 4.389374 TGAAGAAGGCTACAAGAAACTGG 58.611 43.478 0.00 0.00 0.00 4.00
238 239 8.271458 TGTTTTATAATGCTCTTACTCCCATGA 58.729 33.333 0.00 0.00 0.00 3.07
269 270 1.155042 CTTGAGACAACTGCAGGAGC 58.845 55.000 19.93 4.33 42.57 4.70
322 324 7.309805 GGCAAATTTGAACTTATTAGGTCCAGT 60.310 37.037 22.31 0.00 37.29 4.00
422 425 6.020984 CGTTGAAATGTTTATTCGATCTGCA 58.979 36.000 0.00 0.00 0.00 4.41
423 426 6.193410 CGTTGAAATGTTTATTCGATCTGCAG 59.807 38.462 7.63 7.63 0.00 4.41
425 428 5.647658 TGAAATGTTTATTCGATCTGCAGGT 59.352 36.000 15.13 6.50 0.00 4.00
426 429 5.490139 AATGTTTATTCGATCTGCAGGTG 57.510 39.130 15.13 4.08 0.00 4.00
427 430 2.677836 TGTTTATTCGATCTGCAGGTGC 59.322 45.455 15.13 2.53 42.50 5.01
446 453 3.440522 GTGCCTAAACCCATCAAACTCTC 59.559 47.826 0.00 0.00 0.00 3.20
464 471 6.305693 ACTCTCTGTTCTTATTGTGCAAAC 57.694 37.500 0.00 0.00 0.00 2.93
471 478 6.437928 TGTTCTTATTGTGCAAACATGAGTC 58.562 36.000 0.00 0.00 0.00 3.36
505 512 8.943002 AGTTTAGTTATTCAGGTAACGATTTGG 58.057 33.333 0.00 0.00 46.39 3.28
507 514 5.497474 AGTTATTCAGGTAACGATTTGGCT 58.503 37.500 0.00 0.00 46.39 4.75
520 527 9.401873 GTAACGATTTGGCTAACTAAAAATTGT 57.598 29.630 0.00 0.00 37.94 2.71
524 531 7.201350 CGATTTGGCTAACTAAAAATTGTCAGC 60.201 37.037 0.00 0.00 0.00 4.26
543 550 2.440501 GCGAATTGCATTCAGGTAACG 58.559 47.619 0.00 0.00 45.45 3.18
545 552 3.242739 GCGAATTGCATTCAGGTAACGAT 60.243 43.478 0.00 0.00 45.45 3.73
546 553 4.730613 GCGAATTGCATTCAGGTAACGATT 60.731 41.667 0.00 0.00 45.45 3.34
547 554 5.331902 CGAATTGCATTCAGGTAACGATTT 58.668 37.500 0.00 0.00 39.22 2.17
599 617 2.960819 AGGTGACGTACATCTTGCTTC 58.039 47.619 0.00 0.00 36.42 3.86
604 622 5.407387 GGTGACGTACATCTTGCTTCTTTTA 59.593 40.000 0.00 0.00 0.00 1.52
607 625 8.818057 GTGACGTACATCTTGCTTCTTTTATAT 58.182 33.333 0.00 0.00 0.00 0.86
689 957 3.163467 ACGGAGGTTAACTCTAGCAAGT 58.837 45.455 5.42 0.00 45.83 3.16
691 959 4.398673 ACGGAGGTTAACTCTAGCAAGTAG 59.601 45.833 5.42 0.00 45.83 2.57
692 960 4.684877 GGAGGTTAACTCTAGCAAGTAGC 58.315 47.826 5.42 0.00 45.83 3.58
693 961 4.159879 GGAGGTTAACTCTAGCAAGTAGCA 59.840 45.833 5.42 0.00 45.64 3.49
694 962 5.337330 GGAGGTTAACTCTAGCAAGTAGCAA 60.337 44.000 5.42 0.00 45.64 3.91
695 963 5.577554 GAGGTTAACTCTAGCAAGTAGCAAC 59.422 44.000 5.42 0.00 44.05 4.17
738 1006 4.948847 TGACCTTATCATCAGTCAATCCG 58.051 43.478 0.00 0.00 36.36 4.18
754 1022 7.278646 CAGTCAATCCGATCAGACATTTTTCTA 59.721 37.037 13.43 0.00 33.56 2.10
755 1023 7.493971 AGTCAATCCGATCAGACATTTTTCTAG 59.506 37.037 13.43 0.00 33.56 2.43
756 1024 7.278868 GTCAATCCGATCAGACATTTTTCTAGT 59.721 37.037 8.36 0.00 0.00 2.57
757 1025 7.492669 TCAATCCGATCAGACATTTTTCTAGTC 59.507 37.037 0.00 0.00 0.00 2.59
758 1026 6.531503 TCCGATCAGACATTTTTCTAGTCT 57.468 37.500 0.00 0.00 42.97 3.24
860 1152 3.165875 AGATTCACCCGAGAAAGAGACA 58.834 45.455 0.00 0.00 0.00 3.41
867 1163 2.005451 CCGAGAAAGAGACATTGCCTG 58.995 52.381 0.00 0.00 0.00 4.85
886 1186 1.949525 TGTGAAAGTGAAAGAGGCTGC 59.050 47.619 0.00 0.00 0.00 5.25
896 1196 2.738213 AAGAGGCTGCTTGGTCCACG 62.738 60.000 0.00 0.00 0.00 4.94
897 1197 3.240134 GAGGCTGCTTGGTCCACGA 62.240 63.158 0.00 0.00 0.00 4.35
898 1198 2.045926 GGCTGCTTGGTCCACGAT 60.046 61.111 0.00 0.00 0.00 3.73
899 1199 1.675641 GGCTGCTTGGTCCACGATT 60.676 57.895 0.00 0.00 0.00 3.34
900 1200 1.648467 GGCTGCTTGGTCCACGATTC 61.648 60.000 0.00 0.00 0.00 2.52
902 1202 1.002624 TGCTTGGTCCACGATTCCC 60.003 57.895 0.00 0.00 0.00 3.97
903 1203 1.299976 GCTTGGTCCACGATTCCCT 59.700 57.895 0.00 0.00 0.00 4.20
904 1204 0.322546 GCTTGGTCCACGATTCCCTT 60.323 55.000 0.00 0.00 0.00 3.95
906 1206 0.326927 TTGGTCCACGATTCCCTTCC 59.673 55.000 0.00 0.00 0.00 3.46
907 1207 1.223763 GGTCCACGATTCCCTTCCC 59.776 63.158 0.00 0.00 0.00 3.97
951 1302 7.993758 TCCTCCTGATTCTATATCTATACCACG 59.006 40.741 0.00 0.00 0.00 4.94
953 1304 8.734218 TCCTGATTCTATATCTATACCACGAC 57.266 38.462 0.00 0.00 0.00 4.34
954 1305 8.549731 TCCTGATTCTATATCTATACCACGACT 58.450 37.037 0.00 0.00 0.00 4.18
955 1306 9.833917 CCTGATTCTATATCTATACCACGACTA 57.166 37.037 0.00 0.00 0.00 2.59
959 1344 9.616156 ATTCTATATCTATACCACGACTACCTG 57.384 37.037 0.00 0.00 0.00 4.00
961 1346 2.579873 TCTATACCACGACTACCTGCC 58.420 52.381 0.00 0.00 0.00 4.85
982 1367 1.278127 TGGGAAAGGTGTCTCGGATTC 59.722 52.381 0.00 0.00 0.00 2.52
998 1387 2.812591 GGATTCTATAGCCGACACGAGA 59.187 50.000 0.00 0.00 0.00 4.04
1005 1394 1.517257 GCCGACACGAGACATGGAG 60.517 63.158 0.00 0.00 0.00 3.86
1561 2006 2.728817 GGACTATCACGCTCCGGG 59.271 66.667 0.00 0.00 0.00 5.73
1854 2303 2.317609 CGTGGACAAGAAGGGCGTG 61.318 63.158 0.00 0.00 0.00 5.34
1893 2342 0.909623 ACCAAGAAACCGATCCCGAT 59.090 50.000 0.00 0.00 38.22 4.18
1939 2391 1.927895 CATCGTCTTGGTGAGTAGCC 58.072 55.000 0.00 0.00 0.00 3.93
1949 2401 2.168521 TGGTGAGTAGCCAGCATACTTC 59.831 50.000 0.00 0.00 39.33 3.01
1957 2410 1.202076 GCCAGCATACTTCGCAAACTC 60.202 52.381 0.00 0.00 0.00 3.01
1978 2431 2.281484 GCGTGACACCACCACCAT 60.281 61.111 0.00 0.00 40.12 3.55
1981 2434 1.506309 CGTGACACCACCACCATGTG 61.506 60.000 0.00 0.00 40.12 3.21
1982 2435 0.465460 GTGACACCACCACCATGTGT 60.465 55.000 0.00 0.00 45.34 3.72
1986 2439 1.243902 CACCACCACCATGTGTTACC 58.756 55.000 0.00 0.00 34.35 2.85
1987 2440 0.847373 ACCACCACCATGTGTTACCA 59.153 50.000 0.00 0.00 34.35 3.25
1989 2442 1.611491 CCACCACCATGTGTTACCAAC 59.389 52.381 0.00 0.00 34.35 3.77
1992 2486 4.138290 CACCACCATGTGTTACCAACTTA 58.862 43.478 0.00 0.00 0.00 2.24
2065 2559 4.994201 GACACGTCGGCGCTGACA 62.994 66.667 39.86 11.96 42.83 3.58
2077 2571 2.358737 CTGACAACCGAGTGGGCC 60.359 66.667 0.00 0.00 40.62 5.80
2226 2720 1.079438 AGGAGACCCTTCGGCTCTT 59.921 57.895 0.00 0.00 40.78 2.85
2621 3115 1.303317 CCCCGGGAGTTTGTCAAGG 60.303 63.158 26.32 0.00 0.00 3.61
2630 3124 2.250939 TTTGTCAAGGGCGTGCTCG 61.251 57.895 3.31 3.31 40.37 5.03
2660 3154 2.174639 ACTTGATGGACTGGTGTTTGGA 59.825 45.455 0.00 0.00 0.00 3.53
2663 3157 2.174639 TGATGGACTGGTGTTTGGACTT 59.825 45.455 0.00 0.00 0.00 3.01
2668 3169 4.204799 GGACTGGTGTTTGGACTTAAAGT 58.795 43.478 0.00 0.00 0.00 2.66
2671 3172 6.238566 GGACTGGTGTTTGGACTTAAAGTAAC 60.239 42.308 0.00 0.00 0.00 2.50
2672 3173 5.591472 ACTGGTGTTTGGACTTAAAGTAACC 59.409 40.000 0.00 0.00 0.00 2.85
2677 3178 7.982919 GGTGTTTGGACTTAAAGTAACCAAAAT 59.017 33.333 13.96 0.00 46.97 1.82
2713 3214 1.695114 TAGCTGTGGTGCACTGGTGT 61.695 55.000 17.98 0.13 42.22 4.16
2727 3228 1.133216 CTGGTGTCAGTGATCGTCGAT 59.867 52.381 7.63 7.63 36.30 3.59
2728 3229 1.544246 TGGTGTCAGTGATCGTCGATT 59.456 47.619 9.52 0.00 0.00 3.34
2729 3230 2.029380 TGGTGTCAGTGATCGTCGATTT 60.029 45.455 9.52 0.00 0.00 2.17
2730 3231 2.599082 GGTGTCAGTGATCGTCGATTTC 59.401 50.000 9.52 5.91 0.00 2.17
2731 3232 3.242518 GTGTCAGTGATCGTCGATTTCA 58.757 45.455 9.52 1.47 0.00 2.69
2732 3233 3.059570 GTGTCAGTGATCGTCGATTTCAC 59.940 47.826 17.41 17.41 40.00 3.18
2734 3235 3.921021 GTCAGTGATCGTCGATTTCACTT 59.079 43.478 22.76 10.36 45.88 3.16
2765 3607 4.538738 GATACTGAACTGTAGTCCCCTCT 58.461 47.826 0.00 0.00 0.00 3.69
2769 3611 2.111972 TGAACTGTAGTCCCCTCTTCCT 59.888 50.000 0.00 0.00 0.00 3.36
2770 3612 3.174779 GAACTGTAGTCCCCTCTTCCTT 58.825 50.000 0.00 0.00 0.00 3.36
2775 3617 1.945580 AGTCCCCTCTTCCTTCACTC 58.054 55.000 0.00 0.00 0.00 3.51
2776 3618 1.150135 AGTCCCCTCTTCCTTCACTCA 59.850 52.381 0.00 0.00 0.00 3.41
2777 3619 2.192263 GTCCCCTCTTCCTTCACTCAT 58.808 52.381 0.00 0.00 0.00 2.90
2778 3620 2.093235 GTCCCCTCTTCCTTCACTCATG 60.093 54.545 0.00 0.00 0.00 3.07
2779 3621 2.191400 CCCCTCTTCCTTCACTCATGA 58.809 52.381 0.00 0.00 0.00 3.07
2780 3622 2.776536 CCCCTCTTCCTTCACTCATGAT 59.223 50.000 0.00 0.00 33.85 2.45
2781 3623 3.433314 CCCCTCTTCCTTCACTCATGATG 60.433 52.174 0.00 0.00 33.85 3.07
2782 3624 3.204526 CCTCTTCCTTCACTCATGATGC 58.795 50.000 0.00 0.00 33.85 3.91
2783 3625 3.118334 CCTCTTCCTTCACTCATGATGCT 60.118 47.826 0.00 0.00 33.85 3.79
2784 3626 4.121317 CTCTTCCTTCACTCATGATGCTC 58.879 47.826 0.00 0.00 33.85 4.26
2785 3627 2.591571 TCCTTCACTCATGATGCTCG 57.408 50.000 0.00 0.00 33.85 5.03
2786 3628 2.102578 TCCTTCACTCATGATGCTCGA 58.897 47.619 0.00 0.00 33.85 4.04
2787 3629 2.697229 TCCTTCACTCATGATGCTCGAT 59.303 45.455 0.00 0.00 33.85 3.59
2788 3630 3.891366 TCCTTCACTCATGATGCTCGATA 59.109 43.478 0.00 0.00 33.85 2.92
2789 3631 4.022503 TCCTTCACTCATGATGCTCGATAG 60.023 45.833 0.00 0.00 33.85 2.08
2801 3643 1.656652 CTCGATAGCAAGGTTGGTGG 58.343 55.000 4.67 0.00 39.55 4.61
2802 3644 0.392461 TCGATAGCAAGGTTGGTGGC 60.392 55.000 4.67 0.00 39.55 5.01
2803 3645 1.705337 CGATAGCAAGGTTGGTGGCG 61.705 60.000 4.67 4.63 39.55 5.69
2804 3646 0.676782 GATAGCAAGGTTGGTGGCGT 60.677 55.000 4.67 0.00 39.55 5.68
2805 3647 0.251165 ATAGCAAGGTTGGTGGCGTT 60.251 50.000 4.67 0.00 39.55 4.84
2806 3648 0.397187 TAGCAAGGTTGGTGGCGTTA 59.603 50.000 4.67 0.00 39.55 3.18
2807 3649 0.889186 AGCAAGGTTGGTGGCGTTAG 60.889 55.000 0.00 0.00 37.53 2.34
2808 3650 1.170290 GCAAGGTTGGTGGCGTTAGT 61.170 55.000 0.00 0.00 0.00 2.24
2809 3651 1.878948 GCAAGGTTGGTGGCGTTAGTA 60.879 52.381 0.00 0.00 0.00 1.82
2810 3652 2.073816 CAAGGTTGGTGGCGTTAGTAG 58.926 52.381 0.00 0.00 0.00 2.57
2811 3653 0.036671 AGGTTGGTGGCGTTAGTAGC 60.037 55.000 0.00 0.00 0.00 3.58
2812 3654 1.356527 GGTTGGTGGCGTTAGTAGCG 61.357 60.000 1.55 1.55 35.00 4.26
2821 3663 0.713883 CGTTAGTAGCGCACTTGTGG 59.286 55.000 11.47 0.00 38.80 4.17
2822 3664 1.076332 GTTAGTAGCGCACTTGTGGG 58.924 55.000 11.47 12.54 38.80 4.61
2823 3665 0.682852 TTAGTAGCGCACTTGTGGGT 59.317 50.000 11.47 8.74 38.80 4.51
2824 3666 0.245539 TAGTAGCGCACTTGTGGGTC 59.754 55.000 11.47 10.53 38.80 4.46
2825 3667 1.004918 GTAGCGCACTTGTGGGTCT 60.005 57.895 11.47 15.68 0.00 3.85
2826 3668 0.602905 GTAGCGCACTTGTGGGTCTT 60.603 55.000 11.47 7.82 0.00 3.01
2827 3669 0.107831 TAGCGCACTTGTGGGTCTTT 59.892 50.000 11.47 5.87 0.00 2.52
2828 3670 0.751643 AGCGCACTTGTGGGTCTTTT 60.752 50.000 11.47 0.00 0.00 2.27
2829 3671 0.594796 GCGCACTTGTGGGTCTTTTG 60.595 55.000 16.95 0.00 0.00 2.44
2830 3672 0.594796 CGCACTTGTGGGTCTTTTGC 60.595 55.000 9.27 0.00 0.00 3.68
2831 3673 0.249447 GCACTTGTGGGTCTTTTGCC 60.249 55.000 2.81 0.00 0.00 4.52
2832 3674 1.402787 CACTTGTGGGTCTTTTGCCT 58.597 50.000 0.00 0.00 0.00 4.75
2833 3675 1.067516 CACTTGTGGGTCTTTTGCCTG 59.932 52.381 0.00 0.00 0.00 4.85
2834 3676 1.341976 ACTTGTGGGTCTTTTGCCTGT 60.342 47.619 0.00 0.00 0.00 4.00
2835 3677 1.067516 CTTGTGGGTCTTTTGCCTGTG 59.932 52.381 0.00 0.00 0.00 3.66
2836 3678 1.363807 GTGGGTCTTTTGCCTGTGC 59.636 57.895 0.00 0.00 38.26 4.57
2837 3679 2.192861 TGGGTCTTTTGCCTGTGCG 61.193 57.895 0.00 0.00 41.78 5.34
2838 3680 1.896660 GGGTCTTTTGCCTGTGCGA 60.897 57.895 0.00 0.00 41.78 5.10
2839 3681 1.244019 GGGTCTTTTGCCTGTGCGAT 61.244 55.000 0.00 0.00 41.78 4.58
2840 3682 0.598065 GGTCTTTTGCCTGTGCGATT 59.402 50.000 0.00 0.00 41.78 3.34
2841 3683 1.000274 GGTCTTTTGCCTGTGCGATTT 60.000 47.619 0.00 0.00 41.78 2.17
2842 3684 2.227865 GGTCTTTTGCCTGTGCGATTTA 59.772 45.455 0.00 0.00 41.78 1.40
2843 3685 3.492313 GTCTTTTGCCTGTGCGATTTAG 58.508 45.455 0.00 0.00 41.78 1.85
2844 3686 3.058224 GTCTTTTGCCTGTGCGATTTAGT 60.058 43.478 0.00 0.00 41.78 2.24
2845 3687 3.568007 TCTTTTGCCTGTGCGATTTAGTT 59.432 39.130 0.00 0.00 41.78 2.24
2846 3688 2.987413 TTGCCTGTGCGATTTAGTTG 57.013 45.000 0.00 0.00 41.78 3.16
2847 3689 1.890876 TGCCTGTGCGATTTAGTTGT 58.109 45.000 0.00 0.00 41.78 3.32
2848 3690 2.226330 TGCCTGTGCGATTTAGTTGTT 58.774 42.857 0.00 0.00 41.78 2.83
2849 3691 2.225491 TGCCTGTGCGATTTAGTTGTTC 59.775 45.455 0.00 0.00 41.78 3.18
2850 3692 2.414161 GCCTGTGCGATTTAGTTGTTCC 60.414 50.000 0.00 0.00 0.00 3.62
2851 3693 2.811431 CCTGTGCGATTTAGTTGTTCCA 59.189 45.455 0.00 0.00 0.00 3.53
2852 3694 3.120199 CCTGTGCGATTTAGTTGTTCCAG 60.120 47.826 0.00 0.00 0.00 3.86
2853 3695 3.472652 TGTGCGATTTAGTTGTTCCAGT 58.527 40.909 0.00 0.00 0.00 4.00
2854 3696 3.880490 TGTGCGATTTAGTTGTTCCAGTT 59.120 39.130 0.00 0.00 0.00 3.16
2855 3697 4.336993 TGTGCGATTTAGTTGTTCCAGTTT 59.663 37.500 0.00 0.00 0.00 2.66
2856 3698 5.163602 TGTGCGATTTAGTTGTTCCAGTTTT 60.164 36.000 0.00 0.00 0.00 2.43
2857 3699 5.746721 GTGCGATTTAGTTGTTCCAGTTTTT 59.253 36.000 0.00 0.00 0.00 1.94
2858 3700 5.974751 TGCGATTTAGTTGTTCCAGTTTTTC 59.025 36.000 0.00 0.00 0.00 2.29
2859 3701 6.183360 TGCGATTTAGTTGTTCCAGTTTTTCT 60.183 34.615 0.00 0.00 0.00 2.52
2860 3702 6.695713 GCGATTTAGTTGTTCCAGTTTTTCTT 59.304 34.615 0.00 0.00 0.00 2.52
2861 3703 7.222031 GCGATTTAGTTGTTCCAGTTTTTCTTT 59.778 33.333 0.00 0.00 0.00 2.52
2862 3704 8.531530 CGATTTAGTTGTTCCAGTTTTTCTTTG 58.468 33.333 0.00 0.00 0.00 2.77
2863 3705 8.716646 ATTTAGTTGTTCCAGTTTTTCTTTGG 57.283 30.769 0.00 0.00 0.00 3.28
2864 3706 5.738619 AGTTGTTCCAGTTTTTCTTTGGT 57.261 34.783 0.00 0.00 33.65 3.67
2865 3707 5.720202 AGTTGTTCCAGTTTTTCTTTGGTC 58.280 37.500 0.00 0.00 33.65 4.02
2866 3708 5.480422 AGTTGTTCCAGTTTTTCTTTGGTCT 59.520 36.000 0.00 0.00 33.65 3.85
2867 3709 5.323371 TGTTCCAGTTTTTCTTTGGTCTG 57.677 39.130 0.00 0.00 33.65 3.51
2868 3710 4.770010 TGTTCCAGTTTTTCTTTGGTCTGT 59.230 37.500 0.00 0.00 33.65 3.41
2869 3711 5.245075 TGTTCCAGTTTTTCTTTGGTCTGTT 59.755 36.000 0.00 0.00 33.65 3.16
2870 3712 5.993748 TCCAGTTTTTCTTTGGTCTGTTT 57.006 34.783 0.00 0.00 33.65 2.83
2871 3713 6.353404 TCCAGTTTTTCTTTGGTCTGTTTT 57.647 33.333 0.00 0.00 33.65 2.43
2872 3714 7.469537 TCCAGTTTTTCTTTGGTCTGTTTTA 57.530 32.000 0.00 0.00 33.65 1.52
2873 3715 8.073467 TCCAGTTTTTCTTTGGTCTGTTTTAT 57.927 30.769 0.00 0.00 33.65 1.40
2874 3716 9.191479 TCCAGTTTTTCTTTGGTCTGTTTTATA 57.809 29.630 0.00 0.00 33.65 0.98
2875 3717 9.810545 CCAGTTTTTCTTTGGTCTGTTTTATAA 57.189 29.630 0.00 0.00 0.00 0.98
2882 3724 9.847224 TTCTTTGGTCTGTTTTATAAGAAGACT 57.153 29.630 17.07 0.00 0.00 3.24
2883 3725 9.847224 TCTTTGGTCTGTTTTATAAGAAGACTT 57.153 29.630 17.07 0.00 39.81 3.01
2892 3734 9.730420 TGTTTTATAAGAAGACTTTTTCACTGC 57.270 29.630 0.00 0.00 37.53 4.40
2893 3735 9.181805 GTTTTATAAGAAGACTTTTTCACTGCC 57.818 33.333 0.00 0.00 37.53 4.85
2894 3736 8.458573 TTTATAAGAAGACTTTTTCACTGCCA 57.541 30.769 0.00 0.00 37.53 4.92
2895 3737 6.959639 ATAAGAAGACTTTTTCACTGCCAA 57.040 33.333 0.00 0.00 37.53 4.52
2896 3738 4.907879 AGAAGACTTTTTCACTGCCAAG 57.092 40.909 0.00 0.00 0.00 3.61
2897 3739 4.273318 AGAAGACTTTTTCACTGCCAAGT 58.727 39.130 0.00 0.00 36.98 3.16
2898 3740 4.706962 AGAAGACTTTTTCACTGCCAAGTT 59.293 37.500 0.00 0.00 32.98 2.66
2899 3741 5.185828 AGAAGACTTTTTCACTGCCAAGTTT 59.814 36.000 0.00 0.00 32.98 2.66
2900 3742 5.405935 AGACTTTTTCACTGCCAAGTTTT 57.594 34.783 0.00 0.00 32.98 2.43
2901 3743 5.170748 AGACTTTTTCACTGCCAAGTTTTG 58.829 37.500 0.00 0.00 32.98 2.44
2902 3744 4.893608 ACTTTTTCACTGCCAAGTTTTGT 58.106 34.783 0.00 0.00 32.98 2.83
2903 3745 4.690280 ACTTTTTCACTGCCAAGTTTTGTG 59.310 37.500 0.00 0.00 32.98 3.33
2904 3746 4.527509 TTTTCACTGCCAAGTTTTGTGA 57.472 36.364 0.00 0.00 32.98 3.58
2905 3747 3.781079 TTCACTGCCAAGTTTTGTGAG 57.219 42.857 0.00 0.00 38.60 3.51
2906 3748 2.997980 TCACTGCCAAGTTTTGTGAGA 58.002 42.857 0.00 0.00 32.98 3.27
2907 3749 2.682856 TCACTGCCAAGTTTTGTGAGAC 59.317 45.455 0.00 0.00 32.98 3.36
2908 3750 2.423185 CACTGCCAAGTTTTGTGAGACA 59.577 45.455 0.00 0.00 32.98 3.41
2909 3751 2.684881 ACTGCCAAGTTTTGTGAGACAG 59.315 45.455 0.00 0.00 30.14 3.51
2910 3752 2.023673 TGCCAAGTTTTGTGAGACAGG 58.976 47.619 0.00 0.00 0.00 4.00
2911 3753 2.024414 GCCAAGTTTTGTGAGACAGGT 58.976 47.619 0.00 0.00 0.00 4.00
2912 3754 3.211045 GCCAAGTTTTGTGAGACAGGTA 58.789 45.455 0.00 0.00 0.00 3.08
2913 3755 3.251004 GCCAAGTTTTGTGAGACAGGTAG 59.749 47.826 0.00 0.00 0.00 3.18
2914 3756 3.815401 CCAAGTTTTGTGAGACAGGTAGG 59.185 47.826 0.00 0.00 0.00 3.18
2920 3762 0.613777 GTGAGACAGGTAGGGGTTGG 59.386 60.000 0.00 0.00 0.00 3.77
2926 3768 3.920841 AGACAGGTAGGGGTTGGTTAATT 59.079 43.478 0.00 0.00 0.00 1.40
2929 3771 6.218938 AGACAGGTAGGGGTTGGTTAATTAAT 59.781 38.462 0.31 0.00 0.00 1.40
2930 3772 6.429151 ACAGGTAGGGGTTGGTTAATTAATC 58.571 40.000 0.31 0.79 0.00 1.75
2932 3774 5.103387 AGGTAGGGGTTGGTTAATTAATCCC 60.103 44.000 12.73 12.73 45.79 3.85
2937 3779 3.002965 GGTTGGTTAATTAATCCCTCGCG 59.997 47.826 0.00 0.00 0.00 5.87
2938 3780 3.547054 TGGTTAATTAATCCCTCGCGT 57.453 42.857 5.77 0.00 0.00 6.01
2940 3782 4.624015 TGGTTAATTAATCCCTCGCGTAG 58.376 43.478 5.77 1.91 0.00 3.51
2960 3807 2.203771 CGCCGCCTCCTCTCCTAAT 61.204 63.158 0.00 0.00 0.00 1.73
2978 3832 4.141688 CCTAATCTTAGGTTTTCTCCGCCT 60.142 45.833 7.69 0.00 44.26 5.52
2982 3836 0.612732 TAGGTTTTCTCCGCCTCCGA 60.613 55.000 0.00 0.00 36.29 4.55
3043 5611 0.769873 GAGGCATGGTGGATCCTGAT 59.230 55.000 14.23 0.00 37.07 2.90
3078 5646 8.231837 GTGAGACGGCTTTGTTTTTATATGTTA 58.768 33.333 0.00 0.00 0.00 2.41
3113 5681 6.993079 TGTTAGAGTTTATGTCTTGCTCAGA 58.007 36.000 0.00 0.00 0.00 3.27
3128 5696 2.167861 CAGAAAGGCTAGACGGCGC 61.168 63.158 6.90 0.00 44.22 6.53
3152 5720 3.392616 GGCTCCCTGAAGATGGAATAAGA 59.607 47.826 0.00 0.00 0.00 2.10
3153 5721 4.141390 GGCTCCCTGAAGATGGAATAAGAA 60.141 45.833 0.00 0.00 0.00 2.52
3250 6476 2.277084 GTTCGTGTGTCTTCAGGTTGT 58.723 47.619 0.00 0.00 0.00 3.32
3266 6554 2.100252 GGTTGTATCCTTCCGATCGACA 59.900 50.000 18.66 8.13 31.92 4.35
3276 6564 2.286872 TCCGATCGACACTACTCTTCC 58.713 52.381 18.66 0.00 0.00 3.46
3285 6573 1.405821 CACTACTCTTCCTCGGCGATT 59.594 52.381 11.27 0.00 0.00 3.34
3289 6577 1.281899 CTCTTCCTCGGCGATTGTTC 58.718 55.000 11.27 0.00 0.00 3.18
3298 6751 1.798223 CGGCGATTGTTCTTGTTCTGA 59.202 47.619 0.00 0.00 0.00 3.27
3343 7815 2.460918 CACGACGACTTTCTGACTGTT 58.539 47.619 0.00 0.00 0.00 3.16
3360 7933 8.259411 TCTGACTGTTTACTACAACAAGGTTTA 58.741 33.333 0.00 0.00 36.22 2.01
3363 7936 9.269453 GACTGTTTACTACAACAAGGTTTATCT 57.731 33.333 0.00 0.00 36.22 1.98
3375 7948 1.134907 GGTTTATCTGGCTCCGACGAA 60.135 52.381 0.00 0.00 0.00 3.85
3377 7950 1.758936 TTATCTGGCTCCGACGAAGA 58.241 50.000 0.00 0.00 0.00 2.87
3427 8008 3.612955 GCTCGCTTCAGTTCTTGTAGTCT 60.613 47.826 0.00 0.00 0.00 3.24
3429 8010 4.299155 TCGCTTCAGTTCTTGTAGTCTTG 58.701 43.478 0.00 0.00 0.00 3.02
3448 8029 4.101585 TCTTGGCTAGGTGGTCTATGAATG 59.898 45.833 0.00 0.00 0.00 2.67
3545 8126 6.731292 AAAGGACTTTTTGACTGCCTTATT 57.269 33.333 0.00 0.00 34.85 1.40
3546 8127 6.731292 AAGGACTTTTTGACTGCCTTATTT 57.269 33.333 0.00 0.00 34.21 1.40
3547 8128 6.731292 AGGACTTTTTGACTGCCTTATTTT 57.269 33.333 0.00 0.00 0.00 1.82
3548 8129 6.749139 AGGACTTTTTGACTGCCTTATTTTC 58.251 36.000 0.00 0.00 0.00 2.29
3549 8130 6.551227 AGGACTTTTTGACTGCCTTATTTTCT 59.449 34.615 0.00 0.00 0.00 2.52
3550 8131 7.069950 AGGACTTTTTGACTGCCTTATTTTCTT 59.930 33.333 0.00 0.00 0.00 2.52
3551 8132 7.710907 GGACTTTTTGACTGCCTTATTTTCTTT 59.289 33.333 0.00 0.00 0.00 2.52
3552 8133 9.744468 GACTTTTTGACTGCCTTATTTTCTTTA 57.256 29.630 0.00 0.00 0.00 1.85
3556 8137 9.691362 TTTTGACTGCCTTATTTTCTTTATGAC 57.309 29.630 0.00 0.00 0.00 3.06
3557 8138 8.635765 TTGACTGCCTTATTTTCTTTATGACT 57.364 30.769 0.00 0.00 0.00 3.41
3558 8139 8.635765 TGACTGCCTTATTTTCTTTATGACTT 57.364 30.769 0.00 0.00 0.00 3.01
3559 8140 8.514594 TGACTGCCTTATTTTCTTTATGACTTG 58.485 33.333 0.00 0.00 0.00 3.16
3561 8142 8.299570 ACTGCCTTATTTTCTTTATGACTTGTG 58.700 33.333 0.00 0.00 0.00 3.33
3563 8144 7.450014 TGCCTTATTTTCTTTATGACTTGTGGA 59.550 33.333 0.00 0.00 0.00 4.02
3564 8145 8.470002 GCCTTATTTTCTTTATGACTTGTGGAT 58.530 33.333 0.00 0.00 0.00 3.41
3568 8149 6.500684 TTTCTTTATGACTTGTGGATCTGC 57.499 37.500 0.00 0.00 0.00 4.26
3569 8150 5.426689 TCTTTATGACTTGTGGATCTGCT 57.573 39.130 0.00 0.00 0.00 4.24
3571 8152 6.240894 TCTTTATGACTTGTGGATCTGCTTT 58.759 36.000 0.00 0.00 0.00 3.51
3572 8153 7.394016 TCTTTATGACTTGTGGATCTGCTTTA 58.606 34.615 0.00 0.00 0.00 1.85
3573 8154 8.049117 TCTTTATGACTTGTGGATCTGCTTTAT 58.951 33.333 0.00 0.00 0.00 1.40
3574 8155 7.558161 TTATGACTTGTGGATCTGCTTTATG 57.442 36.000 0.00 0.00 0.00 1.90
3575 8156 5.164620 TGACTTGTGGATCTGCTTTATGA 57.835 39.130 0.00 0.00 0.00 2.15
3579 8160 4.824479 TGTGGATCTGCTTTATGACTCA 57.176 40.909 0.00 0.00 0.00 3.41
3580 8161 5.164620 TGTGGATCTGCTTTATGACTCAA 57.835 39.130 0.00 0.00 0.00 3.02
3581 8162 5.748402 TGTGGATCTGCTTTATGACTCAAT 58.252 37.500 0.00 0.00 0.00 2.57
3582 8163 6.888105 TGTGGATCTGCTTTATGACTCAATA 58.112 36.000 0.00 0.00 0.00 1.90
3584 8165 7.994911 TGTGGATCTGCTTTATGACTCAATATT 59.005 33.333 0.00 0.00 0.00 1.28
3585 8166 8.288208 GTGGATCTGCTTTATGACTCAATATTG 58.712 37.037 9.29 9.29 0.00 1.90
3586 8167 7.994911 TGGATCTGCTTTATGACTCAATATTGT 59.005 33.333 14.97 0.00 0.00 2.71
3608 8189 9.733556 ATTGTTATATGATGGTATAAGCCGAAA 57.266 29.630 0.00 0.00 29.64 3.46
3609 8190 9.562408 TTGTTATATGATGGTATAAGCCGAAAA 57.438 29.630 0.00 0.00 29.64 2.29
3610 8191 9.214957 TGTTATATGATGGTATAAGCCGAAAAG 57.785 33.333 0.00 0.00 29.64 2.27
3611 8192 6.743575 ATATGATGGTATAAGCCGAAAAGC 57.256 37.500 0.00 0.00 0.00 3.51
3625 8206 7.859325 AGCCGAAAAGCTTCTTATATAAACA 57.141 32.000 0.00 0.00 41.41 2.83
3626 8207 8.276252 AGCCGAAAAGCTTCTTATATAAACAA 57.724 30.769 0.00 0.00 41.41 2.83
3627 8208 8.736244 AGCCGAAAAGCTTCTTATATAAACAAA 58.264 29.630 0.00 0.00 41.41 2.83
3628 8209 9.349145 GCCGAAAAGCTTCTTATATAAACAAAA 57.651 29.630 0.00 0.00 0.00 2.44
3643 8224 5.993748 AAACAAAAGTTGGAAGGTCAAGA 57.006 34.783 0.00 0.00 34.12 3.02
3644 8225 5.582689 AACAAAAGTTGGAAGGTCAAGAG 57.417 39.130 0.00 0.00 34.12 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 9.436957 TTGCACTGGACAAAACTTAAATAAAAA 57.563 25.926 0.00 0.00 0.00 1.94
238 239 6.498304 CAGTTGTCTCAAGCATAGTTTTTGT 58.502 36.000 0.00 0.00 0.00 2.83
322 324 9.828852 GTTGATTAAACCACAAATTACATACGA 57.171 29.630 0.00 0.00 32.13 3.43
422 425 2.110011 AGTTTGATGGGTTTAGGCACCT 59.890 45.455 0.00 0.00 36.97 4.00
423 426 2.492088 GAGTTTGATGGGTTTAGGCACC 59.508 50.000 0.00 0.00 35.88 5.01
425 428 3.330701 AGAGAGTTTGATGGGTTTAGGCA 59.669 43.478 0.00 0.00 0.00 4.75
426 429 3.691609 CAGAGAGTTTGATGGGTTTAGGC 59.308 47.826 0.00 0.00 0.00 3.93
427 430 4.911390 ACAGAGAGTTTGATGGGTTTAGG 58.089 43.478 0.00 0.00 0.00 2.69
446 453 6.441274 ACTCATGTTTGCACAATAAGAACAG 58.559 36.000 4.40 0.00 36.16 3.16
486 493 7.107542 AGTTAGCCAAATCGTTACCTGAATAA 58.892 34.615 0.00 0.00 0.00 1.40
499 506 7.201350 CGCTGACAATTTTTAGTTAGCCAAATC 60.201 37.037 0.00 0.00 42.38 2.17
503 510 4.757657 TCGCTGACAATTTTTAGTTAGCCA 59.242 37.500 0.00 0.00 42.38 4.75
504 511 5.291293 TCGCTGACAATTTTTAGTTAGCC 57.709 39.130 0.00 0.00 42.38 3.93
505 512 7.657364 CAATTCGCTGACAATTTTTAGTTAGC 58.343 34.615 0.00 0.00 42.06 3.09
507 514 7.142021 TGCAATTCGCTGACAATTTTTAGTTA 58.858 30.769 0.00 0.00 43.06 2.24
534 541 6.182627 TCCTACTAGTGAAATCGTTACCTGA 58.817 40.000 5.39 0.00 0.00 3.86
535 542 6.095160 ACTCCTACTAGTGAAATCGTTACCTG 59.905 42.308 5.39 0.00 0.00 4.00
536 543 6.186234 ACTCCTACTAGTGAAATCGTTACCT 58.814 40.000 5.39 0.00 0.00 3.08
547 554 9.021807 GCCATTGTTATATACTCCTACTAGTGA 57.978 37.037 5.39 0.00 0.00 3.41
607 625 6.322712 ACCCAAGCAAAAATCTGTTTGTACTA 59.677 34.615 0.00 0.00 40.06 1.82
612 638 4.440880 TGACCCAAGCAAAAATCTGTTTG 58.559 39.130 0.00 0.00 40.72 2.93
621 885 2.593026 CCTAGGTTGACCCAAGCAAAA 58.407 47.619 0.00 0.00 43.28 2.44
689 957 4.191544 CAAAGGATTGGATCGAGTTGCTA 58.808 43.478 0.00 0.00 32.69 3.49
691 959 2.749621 ACAAAGGATTGGATCGAGTTGC 59.250 45.455 0.00 0.00 41.01 4.17
692 960 5.376854 AAACAAAGGATTGGATCGAGTTG 57.623 39.130 0.00 0.00 41.01 3.16
693 961 6.040391 TCAAAAACAAAGGATTGGATCGAGTT 59.960 34.615 0.00 0.00 41.01 3.01
694 962 5.534654 TCAAAAACAAAGGATTGGATCGAGT 59.465 36.000 0.00 0.00 41.01 4.18
695 963 5.858581 GTCAAAAACAAAGGATTGGATCGAG 59.141 40.000 0.00 0.00 41.01 4.04
769 1037 5.879223 TGCTTCTTGGATTCATCTCTTCTTC 59.121 40.000 0.00 0.00 0.00 2.87
860 1152 3.571401 CCTCTTTCACTTTCACAGGCAAT 59.429 43.478 0.00 0.00 0.00 3.56
867 1163 2.225467 AGCAGCCTCTTTCACTTTCAC 58.775 47.619 0.00 0.00 0.00 3.18
886 1186 1.679032 GGAAGGGAATCGTGGACCAAG 60.679 57.143 0.00 0.00 0.00 3.61
896 1196 1.152943 GCGGGAAGGGAAGGGAATC 60.153 63.158 0.00 0.00 0.00 2.52
897 1197 1.926426 CTGCGGGAAGGGAAGGGAAT 61.926 60.000 0.00 0.00 0.00 3.01
898 1198 2.530661 TGCGGGAAGGGAAGGGAA 60.531 61.111 0.00 0.00 0.00 3.97
899 1199 3.009115 CTGCGGGAAGGGAAGGGA 61.009 66.667 0.00 0.00 0.00 4.20
900 1200 4.803908 GCTGCGGGAAGGGAAGGG 62.804 72.222 0.00 0.00 0.00 3.95
902 1202 3.350031 ATGGCTGCGGGAAGGGAAG 62.350 63.158 0.00 0.00 0.00 3.46
903 1203 3.338250 ATGGCTGCGGGAAGGGAA 61.338 61.111 0.00 0.00 0.00 3.97
904 1204 4.113815 CATGGCTGCGGGAAGGGA 62.114 66.667 0.00 0.00 0.00 4.20
951 1302 0.253327 CCTTTCCCAGGCAGGTAGTC 59.747 60.000 0.00 0.00 35.13 2.59
961 1346 0.905357 ATCCGAGACACCTTTCCCAG 59.095 55.000 0.00 0.00 0.00 4.45
982 1367 2.350868 CCATGTCTCGTGTCGGCTATAG 60.351 54.545 0.00 0.00 0.00 1.31
1533 1978 2.042762 ATAGTCCCAGCCCCAGCA 59.957 61.111 0.00 0.00 43.56 4.41
1541 1986 1.360551 CGGAGCGTGATAGTCCCAG 59.639 63.158 0.00 0.00 0.00 4.45
1653 2098 1.006102 CACCGCAAACGTCTCCTCT 60.006 57.895 0.00 0.00 37.70 3.69
1854 2303 1.064946 CTCCAGGAGCACGTCGATC 59.935 63.158 2.60 0.00 0.00 3.69
1939 2391 2.076100 TGGAGTTTGCGAAGTATGCTG 58.924 47.619 0.00 0.00 0.00 4.41
1957 2410 2.281414 TGGTGGTGTCACGCATGG 60.281 61.111 0.00 0.00 44.50 3.66
1978 2431 7.466055 CATGGACATGGTAAGTTGGTAACACA 61.466 42.308 4.39 0.00 40.05 3.72
1981 2434 4.142469 GCATGGACATGGTAAGTTGGTAAC 60.142 45.833 13.63 0.00 39.16 2.50
1982 2435 4.013728 GCATGGACATGGTAAGTTGGTAA 58.986 43.478 13.63 0.00 39.16 2.85
1986 2439 3.127548 GTCAGCATGGACATGGTAAGTTG 59.872 47.826 15.66 4.87 46.57 3.16
1987 2440 3.009473 AGTCAGCATGGACATGGTAAGTT 59.991 43.478 15.66 1.52 46.57 2.66
1989 2442 2.941064 CAGTCAGCATGGACATGGTAAG 59.059 50.000 15.66 6.16 46.57 2.34
1992 2486 6.635641 AATGTCAGTCAGCATGGACATGGT 62.636 45.833 10.91 10.91 46.95 3.55
2065 2559 4.740822 GCCATGGCCCACTCGGTT 62.741 66.667 27.24 0.00 34.56 4.44
2077 2571 1.568025 CGTCATCATCAGCGCCATG 59.432 57.895 2.29 7.26 0.00 3.66
2652 3146 8.936070 ATTTTGGTTACTTTAAGTCCAAACAC 57.064 30.769 22.46 9.26 39.97 3.32
2653 3147 9.945904 AAATTTTGGTTACTTTAAGTCCAAACA 57.054 25.926 22.46 16.38 39.97 2.83
2655 3149 9.384764 CCAAATTTTGGTTACTTTAAGTCCAAA 57.615 29.630 20.20 20.20 45.93 3.28
2656 3150 8.950208 CCAAATTTTGGTTACTTTAAGTCCAA 57.050 30.769 18.34 12.43 45.93 3.53
2677 3178 8.207545 ACCACAGCTAAACAATTTTAATCCAAA 58.792 29.630 0.00 0.00 0.00 3.28
2698 3199 1.153188 CTGACACCAGTGCACCACA 60.153 57.895 14.63 4.32 36.74 4.17
2734 3235 8.529476 GGACTACAGTTCAGTATCCTCTAAAAA 58.471 37.037 0.00 0.00 0.00 1.94
2738 3580 5.398809 GGGGACTACAGTTCAGTATCCTCTA 60.399 48.000 0.00 0.00 0.00 2.43
2739 3581 4.538738 GGGACTACAGTTCAGTATCCTCT 58.461 47.826 0.00 0.00 0.00 3.69
2741 3583 3.272551 AGGGGACTACAGTTCAGTATCCT 59.727 47.826 0.00 0.00 40.61 3.24
2744 3586 4.611564 AGAGGGGACTACAGTTCAGTAT 57.388 45.455 0.00 0.00 44.43 2.12
2745 3587 4.342359 GAAGAGGGGACTACAGTTCAGTA 58.658 47.826 0.00 0.00 44.43 2.74
2746 3588 3.166679 GAAGAGGGGACTACAGTTCAGT 58.833 50.000 0.00 0.00 44.43 3.41
2753 3595 2.111972 AGTGAAGGAAGAGGGGACTACA 59.888 50.000 0.00 0.00 44.43 2.74
2754 3596 2.761767 GAGTGAAGGAAGAGGGGACTAC 59.238 54.545 0.00 0.00 44.43 2.73
2756 3598 7.842278 ATCATGAGTGAAGGAAGAGGGGACT 62.842 48.000 0.09 0.00 40.35 3.85
2757 3599 1.645710 TGAGTGAAGGAAGAGGGGAC 58.354 55.000 0.00 0.00 0.00 4.46
2761 3603 3.118334 AGCATCATGAGTGAAGGAAGAGG 60.118 47.826 0.09 0.00 38.01 3.69
2765 3607 2.497273 TCGAGCATCATGAGTGAAGGAA 59.503 45.455 0.09 0.00 38.01 3.36
2782 3624 1.656652 CCACCAACCTTGCTATCGAG 58.343 55.000 0.00 0.00 0.00 4.04
2783 3625 0.392461 GCCACCAACCTTGCTATCGA 60.392 55.000 0.00 0.00 0.00 3.59
2784 3626 1.705337 CGCCACCAACCTTGCTATCG 61.705 60.000 0.00 0.00 0.00 2.92
2785 3627 0.676782 ACGCCACCAACCTTGCTATC 60.677 55.000 0.00 0.00 0.00 2.08
2786 3628 0.251165 AACGCCACCAACCTTGCTAT 60.251 50.000 0.00 0.00 0.00 2.97
2787 3629 0.397187 TAACGCCACCAACCTTGCTA 59.603 50.000 0.00 0.00 0.00 3.49
2788 3630 0.889186 CTAACGCCACCAACCTTGCT 60.889 55.000 0.00 0.00 0.00 3.91
2789 3631 1.170290 ACTAACGCCACCAACCTTGC 61.170 55.000 0.00 0.00 0.00 4.01
2790 3632 2.073816 CTACTAACGCCACCAACCTTG 58.926 52.381 0.00 0.00 0.00 3.61
2791 3633 1.609841 GCTACTAACGCCACCAACCTT 60.610 52.381 0.00 0.00 0.00 3.50
2792 3634 0.036671 GCTACTAACGCCACCAACCT 60.037 55.000 0.00 0.00 0.00 3.50
2793 3635 1.356527 CGCTACTAACGCCACCAACC 61.357 60.000 0.00 0.00 0.00 3.77
2794 3636 2.075761 CGCTACTAACGCCACCAAC 58.924 57.895 0.00 0.00 0.00 3.77
2795 3637 4.582760 CGCTACTAACGCCACCAA 57.417 55.556 0.00 0.00 0.00 3.67
2802 3644 0.713883 CCACAAGTGCGCTACTAACG 59.286 55.000 9.73 5.82 39.18 3.18
2803 3645 1.076332 CCCACAAGTGCGCTACTAAC 58.924 55.000 9.73 0.00 39.18 2.34
2804 3646 0.682852 ACCCACAAGTGCGCTACTAA 59.317 50.000 9.73 0.00 39.18 2.24
2805 3647 0.245539 GACCCACAAGTGCGCTACTA 59.754 55.000 9.73 0.00 39.18 1.82
2806 3648 1.004918 GACCCACAAGTGCGCTACT 60.005 57.895 9.73 7.89 42.89 2.57
2807 3649 0.602905 AAGACCCACAAGTGCGCTAC 60.603 55.000 9.73 5.32 0.00 3.58
2808 3650 0.107831 AAAGACCCACAAGTGCGCTA 59.892 50.000 9.73 0.00 0.00 4.26
2809 3651 0.751643 AAAAGACCCACAAGTGCGCT 60.752 50.000 9.73 0.00 0.00 5.92
2810 3652 0.594796 CAAAAGACCCACAAGTGCGC 60.595 55.000 0.00 0.00 0.00 6.09
2811 3653 0.594796 GCAAAAGACCCACAAGTGCG 60.595 55.000 0.00 0.00 0.00 5.34
2812 3654 0.249447 GGCAAAAGACCCACAAGTGC 60.249 55.000 0.00 0.00 0.00 4.40
2813 3655 1.067516 CAGGCAAAAGACCCACAAGTG 59.932 52.381 0.00 0.00 0.00 3.16
2814 3656 1.341976 ACAGGCAAAAGACCCACAAGT 60.342 47.619 0.00 0.00 0.00 3.16
2815 3657 1.067516 CACAGGCAAAAGACCCACAAG 59.932 52.381 0.00 0.00 0.00 3.16
2816 3658 1.110442 CACAGGCAAAAGACCCACAA 58.890 50.000 0.00 0.00 0.00 3.33
2817 3659 1.391157 GCACAGGCAAAAGACCCACA 61.391 55.000 0.00 0.00 40.72 4.17
2818 3660 1.363807 GCACAGGCAAAAGACCCAC 59.636 57.895 0.00 0.00 40.72 4.61
2819 3661 2.192861 CGCACAGGCAAAAGACCCA 61.193 57.895 0.00 0.00 41.24 4.51
2820 3662 1.244019 ATCGCACAGGCAAAAGACCC 61.244 55.000 0.00 0.00 41.24 4.46
2821 3663 0.598065 AATCGCACAGGCAAAAGACC 59.402 50.000 0.00 0.00 41.24 3.85
2822 3664 2.422276 AAATCGCACAGGCAAAAGAC 57.578 45.000 0.00 0.00 41.24 3.01
2823 3665 3.146066 ACTAAATCGCACAGGCAAAAGA 58.854 40.909 0.00 0.00 41.24 2.52
2824 3666 3.559238 ACTAAATCGCACAGGCAAAAG 57.441 42.857 0.00 0.00 41.24 2.27
2825 3667 3.067461 ACAACTAAATCGCACAGGCAAAA 59.933 39.130 0.00 0.00 41.24 2.44
2826 3668 2.621055 ACAACTAAATCGCACAGGCAAA 59.379 40.909 0.00 0.00 41.24 3.68
2827 3669 2.226330 ACAACTAAATCGCACAGGCAA 58.774 42.857 0.00 0.00 41.24 4.52
2828 3670 1.890876 ACAACTAAATCGCACAGGCA 58.109 45.000 0.00 0.00 41.24 4.75
2829 3671 2.414161 GGAACAACTAAATCGCACAGGC 60.414 50.000 0.00 0.00 0.00 4.85
2830 3672 2.811431 TGGAACAACTAAATCGCACAGG 59.189 45.455 0.00 0.00 31.92 4.00
2831 3673 3.498397 ACTGGAACAACTAAATCGCACAG 59.502 43.478 0.00 0.00 38.70 3.66
2832 3674 3.472652 ACTGGAACAACTAAATCGCACA 58.527 40.909 0.00 0.00 38.70 4.57
2833 3675 4.483476 AACTGGAACAACTAAATCGCAC 57.517 40.909 0.00 0.00 38.70 5.34
2834 3676 5.508200 AAAACTGGAACAACTAAATCGCA 57.492 34.783 0.00 0.00 38.70 5.10
2835 3677 6.206498 AGAAAAACTGGAACAACTAAATCGC 58.794 36.000 0.00 0.00 38.70 4.58
2836 3678 8.531530 CAAAGAAAAACTGGAACAACTAAATCG 58.468 33.333 0.00 0.00 38.70 3.34
2837 3679 8.817100 CCAAAGAAAAACTGGAACAACTAAATC 58.183 33.333 0.00 0.00 38.70 2.17
2838 3680 8.318412 ACCAAAGAAAAACTGGAACAACTAAAT 58.682 29.630 0.00 0.00 38.70 1.40
2839 3681 7.672240 ACCAAAGAAAAACTGGAACAACTAAA 58.328 30.769 0.00 0.00 38.70 1.85
2840 3682 7.177744 AGACCAAAGAAAAACTGGAACAACTAA 59.822 33.333 0.00 0.00 38.70 2.24
2841 3683 6.661805 AGACCAAAGAAAAACTGGAACAACTA 59.338 34.615 0.00 0.00 38.70 2.24
2842 3684 5.480422 AGACCAAAGAAAAACTGGAACAACT 59.520 36.000 0.00 0.00 38.70 3.16
2843 3685 5.576774 CAGACCAAAGAAAAACTGGAACAAC 59.423 40.000 0.00 0.00 38.70 3.32
2844 3686 5.245075 ACAGACCAAAGAAAAACTGGAACAA 59.755 36.000 0.00 0.00 38.70 2.83
2845 3687 4.770010 ACAGACCAAAGAAAAACTGGAACA 59.230 37.500 0.00 0.00 34.16 3.18
2846 3688 5.324784 ACAGACCAAAGAAAAACTGGAAC 57.675 39.130 0.00 0.00 34.16 3.62
2847 3689 5.993748 AACAGACCAAAGAAAAACTGGAA 57.006 34.783 0.00 0.00 34.16 3.53
2848 3690 5.993748 AAACAGACCAAAGAAAAACTGGA 57.006 34.783 0.00 0.00 34.16 3.86
2849 3691 9.810545 TTATAAAACAGACCAAAGAAAAACTGG 57.189 29.630 0.00 0.00 36.24 4.00
2856 3698 9.847224 AGTCTTCTTATAAAACAGACCAAAGAA 57.153 29.630 11.91 0.00 35.44 2.52
2857 3699 9.847224 AAGTCTTCTTATAAAACAGACCAAAGA 57.153 29.630 11.91 0.00 35.44 2.52
2866 3708 9.730420 GCAGTGAAAAAGTCTTCTTATAAAACA 57.270 29.630 0.00 0.00 33.09 2.83
2867 3709 9.181805 GGCAGTGAAAAAGTCTTCTTATAAAAC 57.818 33.333 0.00 0.00 33.09 2.43
2868 3710 8.908903 TGGCAGTGAAAAAGTCTTCTTATAAAA 58.091 29.630 0.00 0.00 33.09 1.52
2869 3711 8.458573 TGGCAGTGAAAAAGTCTTCTTATAAA 57.541 30.769 0.00 0.00 33.09 1.40
2870 3712 8.458573 TTGGCAGTGAAAAAGTCTTCTTATAA 57.541 30.769 0.00 0.00 33.09 0.98
2871 3713 7.719633 ACTTGGCAGTGAAAAAGTCTTCTTATA 59.280 33.333 0.00 0.00 33.09 0.98
2872 3714 6.547510 ACTTGGCAGTGAAAAAGTCTTCTTAT 59.452 34.615 0.00 0.00 33.09 1.73
2873 3715 5.885912 ACTTGGCAGTGAAAAAGTCTTCTTA 59.114 36.000 0.00 0.00 33.09 2.10
2874 3716 4.706962 ACTTGGCAGTGAAAAAGTCTTCTT 59.293 37.500 0.00 0.00 35.14 2.52
2875 3717 4.273318 ACTTGGCAGTGAAAAAGTCTTCT 58.727 39.130 0.00 0.00 0.00 2.85
2876 3718 4.639135 ACTTGGCAGTGAAAAAGTCTTC 57.361 40.909 0.00 0.00 0.00 2.87
2877 3719 5.405935 AAACTTGGCAGTGAAAAAGTCTT 57.594 34.783 0.00 0.00 31.81 3.01
2878 3720 5.170748 CAAAACTTGGCAGTGAAAAAGTCT 58.829 37.500 0.00 0.00 31.81 3.24
2879 3721 4.929211 ACAAAACTTGGCAGTGAAAAAGTC 59.071 37.500 0.00 0.00 31.81 3.01
2880 3722 4.690280 CACAAAACTTGGCAGTGAAAAAGT 59.310 37.500 0.00 0.00 34.40 2.66
2881 3723 4.928615 TCACAAAACTTGGCAGTGAAAAAG 59.071 37.500 2.88 0.00 36.39 2.27
2882 3724 4.887748 TCACAAAACTTGGCAGTGAAAAA 58.112 34.783 2.88 0.00 36.39 1.94
2883 3725 4.219507 TCTCACAAAACTTGGCAGTGAAAA 59.780 37.500 6.48 0.00 38.58 2.29
2884 3726 3.761218 TCTCACAAAACTTGGCAGTGAAA 59.239 39.130 6.48 0.00 38.58 2.69
2885 3727 3.128589 GTCTCACAAAACTTGGCAGTGAA 59.871 43.478 6.48 0.00 38.58 3.18
2886 3728 2.682856 GTCTCACAAAACTTGGCAGTGA 59.317 45.455 0.00 5.12 37.61 3.41
2887 3729 2.423185 TGTCTCACAAAACTTGGCAGTG 59.577 45.455 0.00 0.00 31.60 3.66
2888 3730 2.684881 CTGTCTCACAAAACTTGGCAGT 59.315 45.455 0.00 0.00 34.12 4.40
2889 3731 2.033801 CCTGTCTCACAAAACTTGGCAG 59.966 50.000 0.00 0.00 34.12 4.85
2890 3732 2.023673 CCTGTCTCACAAAACTTGGCA 58.976 47.619 0.00 0.00 34.12 4.92
2891 3733 2.024414 ACCTGTCTCACAAAACTTGGC 58.976 47.619 0.00 0.00 34.12 4.52
2892 3734 3.815401 CCTACCTGTCTCACAAAACTTGG 59.185 47.826 0.00 0.00 34.12 3.61
2893 3735 3.815401 CCCTACCTGTCTCACAAAACTTG 59.185 47.826 0.00 0.00 0.00 3.16
2894 3736 3.181443 CCCCTACCTGTCTCACAAAACTT 60.181 47.826 0.00 0.00 0.00 2.66
2895 3737 2.372172 CCCCTACCTGTCTCACAAAACT 59.628 50.000 0.00 0.00 0.00 2.66
2896 3738 2.105993 ACCCCTACCTGTCTCACAAAAC 59.894 50.000 0.00 0.00 0.00 2.43
2897 3739 2.414612 ACCCCTACCTGTCTCACAAAA 58.585 47.619 0.00 0.00 0.00 2.44
2898 3740 2.105821 CAACCCCTACCTGTCTCACAAA 59.894 50.000 0.00 0.00 0.00 2.83
2899 3741 1.697432 CAACCCCTACCTGTCTCACAA 59.303 52.381 0.00 0.00 0.00 3.33
2900 3742 1.348064 CAACCCCTACCTGTCTCACA 58.652 55.000 0.00 0.00 0.00 3.58
2901 3743 0.613777 CCAACCCCTACCTGTCTCAC 59.386 60.000 0.00 0.00 0.00 3.51
2902 3744 0.192566 ACCAACCCCTACCTGTCTCA 59.807 55.000 0.00 0.00 0.00 3.27
2903 3745 1.359168 AACCAACCCCTACCTGTCTC 58.641 55.000 0.00 0.00 0.00 3.36
2904 3746 2.727429 TAACCAACCCCTACCTGTCT 57.273 50.000 0.00 0.00 0.00 3.41
2905 3747 4.311520 AATTAACCAACCCCTACCTGTC 57.688 45.455 0.00 0.00 0.00 3.51
2906 3748 5.864198 TTAATTAACCAACCCCTACCTGT 57.136 39.130 0.00 0.00 0.00 4.00
2907 3749 5.831525 GGATTAATTAACCAACCCCTACCTG 59.168 44.000 0.00 0.00 0.00 4.00
2908 3750 5.103387 GGGATTAATTAACCAACCCCTACCT 60.103 44.000 15.12 0.00 0.00 3.08
2909 3751 5.103387 AGGGATTAATTAACCAACCCCTACC 60.103 44.000 19.19 6.28 40.87 3.18
2910 3752 6.022107 AGGGATTAATTAACCAACCCCTAC 57.978 41.667 19.19 0.00 40.87 3.18
2911 3753 5.163174 CGAGGGATTAATTAACCAACCCCTA 60.163 44.000 19.19 0.00 42.57 3.53
2912 3754 4.385977 CGAGGGATTAATTAACCAACCCCT 60.386 45.833 19.19 18.14 44.98 4.79
2913 3755 3.887110 CGAGGGATTAATTAACCAACCCC 59.113 47.826 19.19 15.18 36.84 4.95
2914 3756 3.317149 GCGAGGGATTAATTAACCAACCC 59.683 47.826 16.93 16.93 36.47 4.11
2920 3762 3.431233 GGCTACGCGAGGGATTAATTAAC 59.569 47.826 15.93 0.00 0.00 2.01
2926 3768 3.036577 CGGCTACGCGAGGGATTA 58.963 61.111 15.93 0.00 0.00 1.75
2942 3789 2.148558 GATTAGGAGAGGAGGCGGCG 62.149 65.000 0.51 0.51 0.00 6.46
2957 3804 4.141779 GGAGGCGGAGAAAACCTAAGATTA 60.142 45.833 0.00 0.00 32.67 1.75
2960 3807 1.553704 GGAGGCGGAGAAAACCTAAGA 59.446 52.381 0.00 0.00 32.67 2.10
3043 5611 2.927580 GCCGTCTCACCGACAAGGA 61.928 63.158 0.00 0.00 45.00 3.36
3095 5663 4.457257 GCCTTTCTGAGCAAGACATAAACT 59.543 41.667 0.00 0.00 33.46 2.66
3128 5696 1.626356 TTCCATCTTCAGGGAGCCGG 61.626 60.000 0.00 0.00 34.02 6.13
3152 5720 1.459730 GGGACTAGGCGGGGAGATT 60.460 63.158 0.00 0.00 0.00 2.40
3153 5721 2.201771 GGGACTAGGCGGGGAGAT 59.798 66.667 0.00 0.00 0.00 2.75
3250 6476 4.063689 GAGTAGTGTCGATCGGAAGGATA 58.936 47.826 16.41 0.00 34.82 2.59
3266 6554 1.405821 CAATCGCCGAGGAAGAGTAGT 59.594 52.381 0.00 0.00 0.00 2.73
3276 6564 2.069273 AGAACAAGAACAATCGCCGAG 58.931 47.619 0.00 0.00 0.00 4.63
3285 6573 2.290367 CCAACGCATCAGAACAAGAACA 59.710 45.455 0.00 0.00 0.00 3.18
3289 6577 1.197721 GGACCAACGCATCAGAACAAG 59.802 52.381 0.00 0.00 0.00 3.16
3343 7815 6.775708 AGCCAGATAAACCTTGTTGTAGTAA 58.224 36.000 0.00 0.00 0.00 2.24
3360 7933 0.457851 CTTCTTCGTCGGAGCCAGAT 59.542 55.000 0.00 0.00 0.00 2.90
3363 7936 2.646175 CCCTTCTTCGTCGGAGCCA 61.646 63.158 0.00 0.00 0.00 4.75
3375 7948 2.044946 GCCGTCATTGCCCCTTCT 60.045 61.111 0.00 0.00 0.00 2.85
3427 8008 3.780294 ACATTCATAGACCACCTAGCCAA 59.220 43.478 0.00 0.00 0.00 4.52
3429 8010 3.388024 TCACATTCATAGACCACCTAGCC 59.612 47.826 0.00 0.00 0.00 3.93
3521 8102 6.731292 ATAAGGCAGTCAAAAAGTCCTTTT 57.269 33.333 0.00 0.00 43.88 2.27
3522 8103 6.731292 AATAAGGCAGTCAAAAAGTCCTTT 57.269 33.333 0.00 0.00 35.71 3.11
3523 8104 6.731292 AAATAAGGCAGTCAAAAAGTCCTT 57.269 33.333 0.00 0.00 37.63 3.36
3524 8105 6.551227 AGAAAATAAGGCAGTCAAAAAGTCCT 59.449 34.615 0.00 0.00 0.00 3.85
3526 8107 8.648557 AAAGAAAATAAGGCAGTCAAAAAGTC 57.351 30.769 0.00 0.00 0.00 3.01
3530 8111 9.691362 GTCATAAAGAAAATAAGGCAGTCAAAA 57.309 29.630 0.00 0.00 0.00 2.44
3531 8112 9.077885 AGTCATAAAGAAAATAAGGCAGTCAAA 57.922 29.630 0.00 0.00 0.00 2.69
3535 8116 8.299570 CACAAGTCATAAAGAAAATAAGGCAGT 58.700 33.333 0.00 0.00 0.00 4.40
3537 8118 7.450014 TCCACAAGTCATAAAGAAAATAAGGCA 59.550 33.333 0.00 0.00 0.00 4.75
3543 8124 7.395489 AGCAGATCCACAAGTCATAAAGAAAAT 59.605 33.333 0.00 0.00 0.00 1.82
3545 8126 6.240894 AGCAGATCCACAAGTCATAAAGAAA 58.759 36.000 0.00 0.00 0.00 2.52
3546 8127 5.809001 AGCAGATCCACAAGTCATAAAGAA 58.191 37.500 0.00 0.00 0.00 2.52
3547 8128 5.426689 AGCAGATCCACAAGTCATAAAGA 57.573 39.130 0.00 0.00 0.00 2.52
3548 8129 6.506500 AAAGCAGATCCACAAGTCATAAAG 57.493 37.500 0.00 0.00 0.00 1.85
3549 8130 7.828717 TCATAAAGCAGATCCACAAGTCATAAA 59.171 33.333 0.00 0.00 0.00 1.40
3550 8131 7.280876 GTCATAAAGCAGATCCACAAGTCATAA 59.719 37.037 0.00 0.00 0.00 1.90
3551 8132 6.763135 GTCATAAAGCAGATCCACAAGTCATA 59.237 38.462 0.00 0.00 0.00 2.15
3552 8133 5.587844 GTCATAAAGCAGATCCACAAGTCAT 59.412 40.000 0.00 0.00 0.00 3.06
3553 8134 4.937620 GTCATAAAGCAGATCCACAAGTCA 59.062 41.667 0.00 0.00 0.00 3.41
3556 8137 5.181009 TGAGTCATAAAGCAGATCCACAAG 58.819 41.667 0.00 0.00 0.00 3.16
3557 8138 5.164620 TGAGTCATAAAGCAGATCCACAA 57.835 39.130 0.00 0.00 0.00 3.33
3558 8139 4.824479 TGAGTCATAAAGCAGATCCACA 57.176 40.909 0.00 0.00 0.00 4.17
3559 8140 7.976135 ATATTGAGTCATAAAGCAGATCCAC 57.024 36.000 0.00 0.00 0.00 4.02
3561 8142 8.388484 ACAATATTGAGTCATAAAGCAGATCC 57.612 34.615 22.16 0.00 0.00 3.36
3582 8163 9.733556 TTTCGGCTTATACCATCATATAACAAT 57.266 29.630 0.00 0.00 0.00 2.71
3584 8165 9.214957 CTTTTCGGCTTATACCATCATATAACA 57.785 33.333 0.00 0.00 0.00 2.41
3585 8166 8.175716 GCTTTTCGGCTTATACCATCATATAAC 58.824 37.037 0.00 0.00 0.00 1.89
3586 8167 8.100791 AGCTTTTCGGCTTATACCATCATATAA 58.899 33.333 0.00 0.00 39.86 0.98
3588 8169 6.476378 AGCTTTTCGGCTTATACCATCATAT 58.524 36.000 0.00 0.00 39.86 1.78
3590 8171 4.718961 AGCTTTTCGGCTTATACCATCAT 58.281 39.130 0.00 0.00 39.86 2.45
3591 8172 4.150897 AGCTTTTCGGCTTATACCATCA 57.849 40.909 0.00 0.00 39.86 3.07
3601 8182 7.859325 TGTTTATATAAGAAGCTTTTCGGCT 57.141 32.000 0.00 0.00 45.30 5.52
3602 8183 8.905103 TTTGTTTATATAAGAAGCTTTTCGGC 57.095 30.769 0.00 0.00 0.00 5.54
3617 8198 9.362151 TCTTGACCTTCCAACTTTTGTTTATAT 57.638 29.630 0.00 0.00 41.35 0.86
3618 8199 8.754991 TCTTGACCTTCCAACTTTTGTTTATA 57.245 30.769 0.00 0.00 41.35 0.98
3619 8200 7.654022 TCTTGACCTTCCAACTTTTGTTTAT 57.346 32.000 0.00 0.00 41.35 1.40
3620 8201 7.095695 CTCTTGACCTTCCAACTTTTGTTTA 57.904 36.000 0.00 0.00 41.35 2.01
3621 8202 5.965922 CTCTTGACCTTCCAACTTTTGTTT 58.034 37.500 0.00 0.00 41.35 2.83
3622 8203 5.582689 CTCTTGACCTTCCAACTTTTGTT 57.417 39.130 0.00 0.00 44.66 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.