Multiple sequence alignment - TraesCS2D01G521600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G521600 chr2D 100.000 2813 0 0 1 2813 610298832 610296020 0.000000e+00 5195
1 TraesCS2D01G521600 chr2D 82.609 138 24 0 305 442 114141576 114141713 3.810000e-24 122
2 TraesCS2D01G521600 chr2D 82.759 145 16 6 734 872 610380760 610380619 1.370000e-23 121
3 TraesCS2D01G521600 chr2A 91.671 1777 64 25 734 2464 743114829 743113091 0.000000e+00 2385
4 TraesCS2D01G521600 chr2A 87.535 353 25 14 2463 2813 743112477 743112142 9.450000e-105 390
5 TraesCS2D01G521600 chr2A 89.922 129 9 3 1943 2069 743113342 743113216 2.240000e-36 163
6 TraesCS2D01G521600 chr2A 87.069 116 13 2 305 420 743120671 743120558 2.270000e-26 130
7 TraesCS2D01G521600 chr2B 90.424 1838 90 33 734 2528 745724700 745722906 0.000000e+00 2340
8 TraesCS2D01G521600 chr2B 84.211 285 29 9 2538 2813 745722239 745721962 2.150000e-66 263
9 TraesCS2D01G521600 chr2B 91.538 130 6 3 1943 2069 745723224 745723097 1.040000e-39 174
10 TraesCS2D01G521600 chr2B 79.310 203 24 10 1875 2073 745722765 745722577 2.940000e-25 126
11 TraesCS2D01G521600 chr6A 76.564 815 158 21 1001 1806 125541462 125542252 1.560000e-112 416
12 TraesCS2D01G521600 chr6A 87.850 214 20 4 524 733 558457494 558457705 2.160000e-61 246
13 TraesCS2D01G521600 chr6A 87.850 214 20 4 524 733 558460814 558461025 2.160000e-61 246
14 TraesCS2D01G521600 chr6D 76.074 815 162 19 1001 1806 104146301 104147091 7.300000e-106 394
15 TraesCS2D01G521600 chr6B 76.074 815 162 19 1001 1806 189277024 189277814 7.300000e-106 394
16 TraesCS2D01G521600 chr6B 80.147 408 62 9 59 464 51740757 51740367 1.280000e-73 287
17 TraesCS2D01G521600 chr1A 81.068 412 65 11 55 464 492810430 492810030 1.630000e-82 316
18 TraesCS2D01G521600 chr1A 86.232 138 19 0 305 442 372909293 372909430 1.750000e-32 150
19 TraesCS2D01G521600 chr4A 80.882 408 63 11 60 464 403171754 403172149 9.790000e-80 307
20 TraesCS2D01G521600 chr4A 88.626 211 18 5 527 733 677194340 677194548 4.650000e-63 252
21 TraesCS2D01G521600 chr1B 80.392 408 63 10 60 464 108867560 108867167 7.620000e-76 294
22 TraesCS2D01G521600 chr7A 79.902 408 62 7 60 464 191820453 191820843 5.930000e-72 281
23 TraesCS2D01G521600 chr5B 79.756 410 64 12 59 464 61558978 61558584 2.130000e-71 279
24 TraesCS2D01G521600 chr5B 79.412 408 61 6 60 464 604227882 604227495 1.660000e-67 267
25 TraesCS2D01G521600 chr5B 86.087 230 23 8 523 746 387765710 387765936 3.620000e-59 239
26 TraesCS2D01G521600 chr4B 80.769 364 56 7 59 420 455976799 455976448 3.570000e-69 272
27 TraesCS2D01G521600 chr5A 88.837 215 19 3 523 733 456461590 456461803 2.780000e-65 259
28 TraesCS2D01G521600 chr5A 87.755 196 24 0 60 255 123392042 123391847 2.180000e-56 230
29 TraesCS2D01G521600 chr3D 88.462 208 21 2 527 733 572292563 572292358 6.020000e-62 248
30 TraesCS2D01G521600 chr1D 88.318 214 15 8 527 734 482993880 482994089 6.020000e-62 248
31 TraesCS2D01G521600 chrUn 88.152 211 19 4 527 733 138484938 138484730 2.160000e-61 246
32 TraesCS2D01G521600 chrUn 87.907 215 19 5 524 733 171112389 171112601 2.160000e-61 246


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G521600 chr2D 610296020 610298832 2812 True 5195.000000 5195 100.000000 1 2813 1 chr2D.!!$R1 2812
1 TraesCS2D01G521600 chr2A 743112142 743114829 2687 True 979.333333 2385 89.709333 734 2813 3 chr2A.!!$R2 2079
2 TraesCS2D01G521600 chr2B 745721962 745724700 2738 True 725.750000 2340 86.370750 734 2813 4 chr2B.!!$R1 2079
3 TraesCS2D01G521600 chr6A 125541462 125542252 790 False 416.000000 416 76.564000 1001 1806 1 chr6A.!!$F1 805
4 TraesCS2D01G521600 chr6A 558457494 558461025 3531 False 246.000000 246 87.850000 524 733 2 chr6A.!!$F2 209
5 TraesCS2D01G521600 chr6D 104146301 104147091 790 False 394.000000 394 76.074000 1001 1806 1 chr6D.!!$F1 805
6 TraesCS2D01G521600 chr6B 189277024 189277814 790 False 394.000000 394 76.074000 1001 1806 1 chr6B.!!$F1 805

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
513 514 0.035317 ATCTTCTGCTGCAACGGTGA 59.965 50.0 3.55 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2478 4962 2.609459 CGCTCACGAAATCTTATTGGCT 59.391 45.455 0.0 0.0 43.93 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 2.526304 GTCGCAAGGCATGGTATAGA 57.474 50.000 0.00 0.00 45.31 1.98
65 66 3.045601 GTCGCAAGGCATGGTATAGAT 57.954 47.619 0.00 0.00 45.31 1.98
66 67 2.738846 GTCGCAAGGCATGGTATAGATG 59.261 50.000 0.00 0.00 45.31 2.90
67 68 2.079158 CGCAAGGCATGGTATAGATGG 58.921 52.381 0.00 0.00 0.00 3.51
68 69 1.815003 GCAAGGCATGGTATAGATGGC 59.185 52.381 9.25 9.25 44.63 4.40
69 70 2.440409 CAAGGCATGGTATAGATGGCC 58.560 52.381 12.36 0.00 45.23 5.36
70 71 1.746157 AGGCATGGTATAGATGGCCA 58.254 50.000 8.56 8.56 45.23 5.36
71 72 2.065007 AGGCATGGTATAGATGGCCAA 58.935 47.619 10.96 0.00 45.23 4.52
72 73 2.446666 AGGCATGGTATAGATGGCCAAA 59.553 45.455 10.96 0.00 45.23 3.28
73 74 2.558359 GGCATGGTATAGATGGCCAAAC 59.442 50.000 10.96 7.46 39.80 2.93
74 75 2.226437 GCATGGTATAGATGGCCAAACG 59.774 50.000 10.96 0.00 35.74 3.60
75 76 2.631160 TGGTATAGATGGCCAAACGG 57.369 50.000 10.96 0.00 0.00 4.44
76 77 1.142060 TGGTATAGATGGCCAAACGGG 59.858 52.381 10.96 0.00 40.85 5.28
99 100 2.757099 CCAATCAGGCCAGCCCAC 60.757 66.667 5.01 0.00 36.58 4.61
100 101 3.136123 CAATCAGGCCAGCCCACG 61.136 66.667 5.01 0.00 36.58 4.94
101 102 3.329889 AATCAGGCCAGCCCACGA 61.330 61.111 5.01 0.00 36.58 4.35
102 103 3.335356 AATCAGGCCAGCCCACGAG 62.335 63.158 5.01 0.00 36.58 4.18
109 110 4.435436 CAGCCCACGAGCACGCTA 62.435 66.667 2.62 0.00 43.96 4.26
110 111 4.135153 AGCCCACGAGCACGCTAG 62.135 66.667 2.62 0.00 43.96 3.42
112 113 4.435436 CCCACGAGCACGCTAGCA 62.435 66.667 16.45 0.00 43.96 3.49
113 114 3.181967 CCACGAGCACGCTAGCAC 61.182 66.667 16.45 3.22 43.96 4.40
117 118 2.881352 GAGCACGCTAGCACGACC 60.881 66.667 16.45 0.00 36.85 4.79
118 119 4.436998 AGCACGCTAGCACGACCC 62.437 66.667 16.45 0.00 36.85 4.46
120 121 4.415332 CACGCTAGCACGACCCGT 62.415 66.667 16.45 0.00 42.36 5.28
121 122 4.112341 ACGCTAGCACGACCCGTC 62.112 66.667 16.45 0.00 38.32 4.79
122 123 4.111016 CGCTAGCACGACCCGTCA 62.111 66.667 16.45 0.00 38.32 4.35
123 124 2.494918 GCTAGCACGACCCGTCAT 59.505 61.111 10.63 0.00 38.32 3.06
124 125 1.878522 GCTAGCACGACCCGTCATG 60.879 63.158 10.63 0.00 38.32 3.07
125 126 1.226974 CTAGCACGACCCGTCATGG 60.227 63.158 0.00 0.00 38.32 3.66
152 153 4.397832 GGCACGGGCTAAACGGGA 62.398 66.667 10.74 0.00 36.74 5.14
153 154 2.124860 GCACGGGCTAAACGGGAT 60.125 61.111 0.00 0.00 36.74 3.85
154 155 2.469516 GCACGGGCTAAACGGGATG 61.470 63.158 0.00 0.00 36.74 3.51
155 156 1.078708 CACGGGCTAAACGGGATGT 60.079 57.895 0.00 0.00 36.74 3.06
156 157 1.078708 ACGGGCTAAACGGGATGTG 60.079 57.895 0.00 0.00 35.23 3.21
157 158 2.469516 CGGGCTAAACGGGATGTGC 61.470 63.158 0.00 0.00 0.00 4.57
158 159 2.119029 GGGCTAAACGGGATGTGCC 61.119 63.158 0.00 0.00 36.64 5.01
178 179 3.279116 GCACGCAGCACACCTTGA 61.279 61.111 0.00 0.00 44.79 3.02
179 180 2.941333 CACGCAGCACACCTTGAG 59.059 61.111 0.00 0.00 0.00 3.02
180 181 2.974698 ACGCAGCACACCTTGAGC 60.975 61.111 0.00 0.00 34.10 4.26
181 182 3.730761 CGCAGCACACCTTGAGCC 61.731 66.667 0.00 0.00 34.43 4.70
182 183 2.595463 GCAGCACACCTTGAGCCA 60.595 61.111 0.00 0.00 34.43 4.75
183 184 1.975407 GCAGCACACCTTGAGCCAT 60.975 57.895 0.00 0.00 34.43 4.40
184 185 1.930908 GCAGCACACCTTGAGCCATC 61.931 60.000 0.00 0.00 34.43 3.51
185 186 1.001641 AGCACACCTTGAGCCATCC 60.002 57.895 0.00 0.00 34.43 3.51
186 187 1.303561 GCACACCTTGAGCCATCCA 60.304 57.895 0.00 0.00 0.00 3.41
187 188 0.682209 GCACACCTTGAGCCATCCAT 60.682 55.000 0.00 0.00 0.00 3.41
188 189 1.100510 CACACCTTGAGCCATCCATG 58.899 55.000 0.00 0.00 0.00 3.66
198 199 2.073232 CCATCCATGGGCCTAGAGG 58.927 63.158 13.02 2.87 44.31 3.69
208 209 4.537433 CCTAGAGGCTGGGCACGC 62.537 72.222 0.00 0.00 0.00 5.34
209 210 4.880537 CTAGAGGCTGGGCACGCG 62.881 72.222 3.53 3.53 0.00 6.01
236 237 2.203098 GGCACGGCCCGCTTATTA 60.203 61.111 1.23 0.00 44.06 0.98
237 238 1.599797 GGCACGGCCCGCTTATTAT 60.600 57.895 1.23 0.00 44.06 1.28
238 239 1.170290 GGCACGGCCCGCTTATTATT 61.170 55.000 1.23 0.00 44.06 1.40
239 240 0.666374 GCACGGCCCGCTTATTATTT 59.334 50.000 1.23 0.00 0.00 1.40
240 241 1.066454 GCACGGCCCGCTTATTATTTT 59.934 47.619 1.23 0.00 0.00 1.82
241 242 2.480587 GCACGGCCCGCTTATTATTTTT 60.481 45.455 1.23 0.00 0.00 1.94
272 273 8.848948 TTTTTAGAAATATGTGTGTGTGTGTG 57.151 30.769 0.00 0.00 0.00 3.82
273 274 7.561021 TTTAGAAATATGTGTGTGTGTGTGT 57.439 32.000 0.00 0.00 0.00 3.72
274 275 5.422666 AGAAATATGTGTGTGTGTGTGTG 57.577 39.130 0.00 0.00 0.00 3.82
275 276 4.881273 AGAAATATGTGTGTGTGTGTGTGT 59.119 37.500 0.00 0.00 0.00 3.72
276 277 4.550577 AATATGTGTGTGTGTGTGTGTG 57.449 40.909 0.00 0.00 0.00 3.82
277 278 1.819928 ATGTGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 0.00 3.72
278 279 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
279 280 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
280 281 1.265635 GTGTGTGTGTGTGTGTGTGTT 59.734 47.619 0.00 0.00 0.00 3.32
281 282 2.480802 GTGTGTGTGTGTGTGTGTGTTA 59.519 45.455 0.00 0.00 0.00 2.41
282 283 2.739379 TGTGTGTGTGTGTGTGTGTTAG 59.261 45.455 0.00 0.00 0.00 2.34
283 284 2.997303 GTGTGTGTGTGTGTGTGTTAGA 59.003 45.455 0.00 0.00 0.00 2.10
284 285 2.997303 TGTGTGTGTGTGTGTGTTAGAC 59.003 45.455 0.00 0.00 0.00 2.59
285 286 2.350498 GTGTGTGTGTGTGTGTTAGACC 59.650 50.000 0.00 0.00 0.00 3.85
286 287 2.235155 TGTGTGTGTGTGTGTTAGACCT 59.765 45.455 0.00 0.00 0.00 3.85
287 288 3.447944 TGTGTGTGTGTGTGTTAGACCTA 59.552 43.478 0.00 0.00 0.00 3.08
288 289 4.081586 TGTGTGTGTGTGTGTTAGACCTAA 60.082 41.667 0.00 0.00 0.00 2.69
289 290 4.871557 GTGTGTGTGTGTGTTAGACCTAAA 59.128 41.667 0.00 0.00 0.00 1.85
290 291 5.526111 GTGTGTGTGTGTGTTAGACCTAAAT 59.474 40.000 0.00 0.00 0.00 1.40
291 292 6.037830 GTGTGTGTGTGTGTTAGACCTAAATT 59.962 38.462 0.00 0.00 0.00 1.82
292 293 7.225145 GTGTGTGTGTGTGTTAGACCTAAATTA 59.775 37.037 0.00 0.00 0.00 1.40
293 294 7.225145 TGTGTGTGTGTGTTAGACCTAAATTAC 59.775 37.037 0.00 0.00 0.00 1.89
294 295 7.225145 GTGTGTGTGTGTTAGACCTAAATTACA 59.775 37.037 0.00 0.00 0.00 2.41
295 296 7.439955 TGTGTGTGTGTTAGACCTAAATTACAG 59.560 37.037 0.00 0.00 0.00 2.74
296 297 6.425721 TGTGTGTGTTAGACCTAAATTACAGC 59.574 38.462 0.00 0.00 0.00 4.40
297 298 5.935789 TGTGTGTTAGACCTAAATTACAGCC 59.064 40.000 0.00 0.00 0.00 4.85
298 299 5.935789 GTGTGTTAGACCTAAATTACAGCCA 59.064 40.000 0.00 0.00 0.00 4.75
299 300 6.598064 GTGTGTTAGACCTAAATTACAGCCAT 59.402 38.462 0.00 0.00 0.00 4.40
300 301 7.120726 GTGTGTTAGACCTAAATTACAGCCATT 59.879 37.037 0.00 0.00 0.00 3.16
301 302 8.322828 TGTGTTAGACCTAAATTACAGCCATTA 58.677 33.333 0.00 0.00 0.00 1.90
302 303 8.827677 GTGTTAGACCTAAATTACAGCCATTAG 58.172 37.037 0.00 0.00 0.00 1.73
303 304 7.990886 TGTTAGACCTAAATTACAGCCATTAGG 59.009 37.037 8.49 8.49 46.37 2.69
324 325 3.826729 GGCCTAAAATACAGCCCAATAGG 59.173 47.826 0.00 0.00 39.60 2.57
337 338 3.524541 CCCAATAGGCTGAAAAACATGC 58.475 45.455 0.00 0.00 0.00 4.06
338 339 3.181397 CCAATAGGCTGAAAAACATGCG 58.819 45.455 0.00 0.00 0.00 4.73
339 340 3.119531 CCAATAGGCTGAAAAACATGCGA 60.120 43.478 0.00 0.00 0.00 5.10
340 341 3.764885 ATAGGCTGAAAAACATGCGAC 57.235 42.857 0.00 0.00 0.00 5.19
341 342 0.598065 AGGCTGAAAAACATGCGACC 59.402 50.000 0.00 0.00 0.00 4.79
342 343 0.388520 GGCTGAAAAACATGCGACCC 60.389 55.000 0.00 0.00 0.00 4.46
343 344 0.313672 GCTGAAAAACATGCGACCCA 59.686 50.000 0.00 0.00 0.00 4.51
344 345 1.666888 GCTGAAAAACATGCGACCCAG 60.667 52.381 0.00 0.00 0.00 4.45
345 346 1.608590 CTGAAAAACATGCGACCCAGT 59.391 47.619 0.00 0.00 0.00 4.00
346 347 2.811431 CTGAAAAACATGCGACCCAGTA 59.189 45.455 0.00 0.00 0.00 2.74
347 348 3.417101 TGAAAAACATGCGACCCAGTAT 58.583 40.909 0.00 0.00 0.00 2.12
348 349 3.190327 TGAAAAACATGCGACCCAGTATG 59.810 43.478 0.00 0.00 39.59 2.39
349 350 1.094785 AAACATGCGACCCAGTATGC 58.905 50.000 0.00 0.00 37.68 3.14
350 351 0.253044 AACATGCGACCCAGTATGCT 59.747 50.000 0.00 0.00 37.68 3.79
351 352 1.119684 ACATGCGACCCAGTATGCTA 58.880 50.000 0.00 0.00 37.68 3.49
352 353 1.484653 ACATGCGACCCAGTATGCTAA 59.515 47.619 0.00 0.00 37.68 3.09
353 354 2.093181 ACATGCGACCCAGTATGCTAAA 60.093 45.455 0.00 0.00 37.68 1.85
354 355 2.772077 TGCGACCCAGTATGCTAAAA 57.228 45.000 0.00 0.00 31.97 1.52
355 356 2.627945 TGCGACCCAGTATGCTAAAAG 58.372 47.619 0.00 0.00 31.97 2.27
356 357 2.027561 TGCGACCCAGTATGCTAAAAGT 60.028 45.455 0.00 0.00 31.97 2.66
357 358 3.196039 TGCGACCCAGTATGCTAAAAGTA 59.804 43.478 0.00 0.00 31.97 2.24
358 359 3.554731 GCGACCCAGTATGCTAAAAGTAC 59.445 47.826 0.00 0.00 31.97 2.73
359 360 4.117685 CGACCCAGTATGCTAAAAGTACC 58.882 47.826 0.00 0.00 31.97 3.34
360 361 4.382254 CGACCCAGTATGCTAAAAGTACCA 60.382 45.833 0.00 0.00 31.97 3.25
361 362 4.840271 ACCCAGTATGCTAAAAGTACCAC 58.160 43.478 0.00 0.00 31.97 4.16
362 363 3.869246 CCCAGTATGCTAAAAGTACCACG 59.131 47.826 0.00 0.00 31.97 4.94
363 364 3.869246 CCAGTATGCTAAAAGTACCACGG 59.131 47.826 0.00 0.00 31.97 4.94
364 365 3.869246 CAGTATGCTAAAAGTACCACGGG 59.131 47.826 0.00 0.00 0.00 5.28
365 366 1.746470 ATGCTAAAAGTACCACGGGC 58.254 50.000 0.00 0.00 0.00 6.13
366 367 0.321830 TGCTAAAAGTACCACGGGCC 60.322 55.000 0.00 0.00 0.00 5.80
367 368 1.363885 GCTAAAAGTACCACGGGCCG 61.364 60.000 27.06 27.06 0.00 6.13
368 369 0.741927 CTAAAAGTACCACGGGCCGG 60.742 60.000 31.78 18.68 0.00 6.13
369 370 2.801483 TAAAAGTACCACGGGCCGGC 62.801 60.000 31.78 21.18 0.00 6.13
378 379 2.439519 CGGGCCGGCCTGTTTAAT 60.440 61.111 41.29 0.00 37.68 1.40
379 380 1.153127 CGGGCCGGCCTGTTTAATA 60.153 57.895 41.29 0.00 37.68 0.98
380 381 0.748729 CGGGCCGGCCTGTTTAATAA 60.749 55.000 41.29 0.00 37.68 1.40
381 382 0.742505 GGGCCGGCCTGTTTAATAAC 59.257 55.000 42.70 19.99 36.10 1.89
382 383 0.742505 GGCCGGCCTGTTTAATAACC 59.257 55.000 38.76 6.46 33.15 2.85
383 384 1.465794 GCCGGCCTGTTTAATAACCA 58.534 50.000 18.11 0.00 33.15 3.67
384 385 1.404035 GCCGGCCTGTTTAATAACCAG 59.596 52.381 18.11 0.00 33.15 4.00
385 386 2.021457 CCGGCCTGTTTAATAACCAGG 58.979 52.381 11.67 11.67 36.48 4.45
386 387 1.404035 CGGCCTGTTTAATAACCAGGC 59.596 52.381 27.00 27.00 46.48 4.85
388 389 2.452505 GCCTGTTTAATAACCAGGCCA 58.547 47.619 25.33 0.00 44.25 5.36
389 390 3.031013 GCCTGTTTAATAACCAGGCCAT 58.969 45.455 25.33 0.00 44.25 4.40
390 391 4.211920 GCCTGTTTAATAACCAGGCCATA 58.788 43.478 25.33 0.00 44.25 2.74
391 392 4.037565 GCCTGTTTAATAACCAGGCCATAC 59.962 45.833 25.33 3.42 44.25 2.39
392 393 4.583073 CCTGTTTAATAACCAGGCCATACC 59.417 45.833 5.01 0.00 34.00 2.73
393 394 5.445964 CTGTTTAATAACCAGGCCATACCT 58.554 41.667 5.01 0.00 39.92 3.08
401 402 2.822399 GGCCATACCTGGGACGAG 59.178 66.667 0.00 0.00 43.36 4.18
402 403 2.808206 GGCCATACCTGGGACGAGG 61.808 68.421 0.00 0.00 43.36 4.63
403 404 1.760875 GCCATACCTGGGACGAGGA 60.761 63.158 7.40 0.00 43.36 3.71
404 405 1.749334 GCCATACCTGGGACGAGGAG 61.749 65.000 7.40 0.00 43.36 3.69
405 406 1.742768 CATACCTGGGACGAGGAGC 59.257 63.158 7.40 0.00 36.51 4.70
443 444 2.185867 GCACGACCGGGCTATTGA 59.814 61.111 5.33 0.00 42.14 2.57
444 445 1.883084 GCACGACCGGGCTATTGAG 60.883 63.158 5.33 0.00 42.14 3.02
445 446 1.227263 CACGACCGGGCTATTGAGG 60.227 63.158 5.33 0.00 0.00 3.86
479 480 4.341502 CGCAACCCGTTTGGCCAG 62.342 66.667 5.11 0.00 37.83 4.85
480 481 4.662961 GCAACCCGTTTGGCCAGC 62.663 66.667 5.11 0.00 37.83 4.85
481 482 2.912025 CAACCCGTTTGGCCAGCT 60.912 61.111 5.11 0.00 37.83 4.24
482 483 2.597510 AACCCGTTTGGCCAGCTC 60.598 61.111 5.11 0.00 37.83 4.09
483 484 3.133365 AACCCGTTTGGCCAGCTCT 62.133 57.895 5.11 0.00 37.83 4.09
484 485 3.058160 CCCGTTTGGCCAGCTCTG 61.058 66.667 5.11 0.00 0.00 3.35
485 486 2.032528 CCGTTTGGCCAGCTCTGA 59.967 61.111 5.11 0.00 0.00 3.27
486 487 2.328099 CCGTTTGGCCAGCTCTGAC 61.328 63.158 5.11 0.00 0.00 3.51
487 488 1.597854 CGTTTGGCCAGCTCTGACA 60.598 57.895 5.11 0.00 0.00 3.58
488 489 0.957395 CGTTTGGCCAGCTCTGACAT 60.957 55.000 5.11 0.00 0.00 3.06
489 490 0.524862 GTTTGGCCAGCTCTGACATG 59.475 55.000 5.11 0.00 0.00 3.21
490 491 0.609957 TTTGGCCAGCTCTGACATGG 60.610 55.000 5.11 0.06 37.15 3.66
491 492 1.491274 TTGGCCAGCTCTGACATGGA 61.491 55.000 5.11 0.00 36.09 3.41
492 493 1.451028 GGCCAGCTCTGACATGGAC 60.451 63.158 0.00 1.12 36.09 4.02
493 494 1.297689 GCCAGCTCTGACATGGACA 59.702 57.895 7.42 0.00 36.09 4.02
494 495 0.321919 GCCAGCTCTGACATGGACAA 60.322 55.000 7.42 0.00 36.09 3.18
495 496 1.681166 GCCAGCTCTGACATGGACAAT 60.681 52.381 7.42 0.00 36.09 2.71
496 497 2.286872 CCAGCTCTGACATGGACAATC 58.713 52.381 0.00 0.00 36.09 2.67
497 498 2.093075 CCAGCTCTGACATGGACAATCT 60.093 50.000 0.00 0.00 36.09 2.40
498 499 3.607741 CAGCTCTGACATGGACAATCTT 58.392 45.455 0.00 0.00 0.00 2.40
499 500 3.622163 CAGCTCTGACATGGACAATCTTC 59.378 47.826 0.00 0.00 0.00 2.87
500 501 3.518705 AGCTCTGACATGGACAATCTTCT 59.481 43.478 0.00 0.00 0.00 2.85
501 502 3.622163 GCTCTGACATGGACAATCTTCTG 59.378 47.826 0.00 0.00 0.00 3.02
502 503 3.603532 TCTGACATGGACAATCTTCTGC 58.396 45.455 0.00 0.00 0.00 4.26
503 504 3.262660 TCTGACATGGACAATCTTCTGCT 59.737 43.478 0.00 0.00 0.00 4.24
504 505 3.340928 TGACATGGACAATCTTCTGCTG 58.659 45.455 0.00 0.00 0.00 4.41
505 506 2.089980 ACATGGACAATCTTCTGCTGC 58.910 47.619 0.00 0.00 0.00 5.25
506 507 2.089201 CATGGACAATCTTCTGCTGCA 58.911 47.619 0.88 0.88 0.00 4.41
507 508 2.275134 TGGACAATCTTCTGCTGCAA 57.725 45.000 3.02 0.00 0.00 4.08
508 509 1.881973 TGGACAATCTTCTGCTGCAAC 59.118 47.619 3.02 0.00 0.00 4.17
509 510 1.135859 GGACAATCTTCTGCTGCAACG 60.136 52.381 3.02 0.00 0.00 4.10
510 511 0.877071 ACAATCTTCTGCTGCAACGG 59.123 50.000 3.02 0.00 0.00 4.44
511 512 0.877071 CAATCTTCTGCTGCAACGGT 59.123 50.000 3.02 0.00 0.00 4.83
512 513 0.877071 AATCTTCTGCTGCAACGGTG 59.123 50.000 3.02 0.00 0.00 4.94
513 514 0.035317 ATCTTCTGCTGCAACGGTGA 59.965 50.000 3.55 0.00 0.00 4.02
514 515 0.601046 TCTTCTGCTGCAACGGTGAG 60.601 55.000 3.55 0.00 0.00 3.51
515 516 1.572085 CTTCTGCTGCAACGGTGAGG 61.572 60.000 3.55 0.00 0.00 3.86
516 517 2.031012 CTGCTGCAACGGTGAGGA 59.969 61.111 3.55 0.00 0.00 3.71
517 518 2.280797 TGCTGCAACGGTGAGGAC 60.281 61.111 3.55 0.00 0.00 3.85
518 519 3.414700 GCTGCAACGGTGAGGACG 61.415 66.667 3.55 0.00 37.36 4.79
519 520 3.414700 CTGCAACGGTGAGGACGC 61.415 66.667 3.55 0.00 34.00 5.19
520 521 4.228567 TGCAACGGTGAGGACGCA 62.229 61.111 3.55 0.00 34.00 5.24
521 522 3.712881 GCAACGGTGAGGACGCAC 61.713 66.667 3.55 0.00 38.05 5.34
522 523 2.279851 CAACGGTGAGGACGCACA 60.280 61.111 0.00 0.00 40.52 4.57
523 524 2.279918 AACGGTGAGGACGCACAC 60.280 61.111 8.38 0.00 40.52 3.82
547 548 2.204059 AGACTTGCCTGCTCCCCT 60.204 61.111 0.00 0.00 0.00 4.79
548 549 2.250741 GAGACTTGCCTGCTCCCCTC 62.251 65.000 0.00 0.00 0.00 4.30
597 598 3.244976 CGTGGCTTGATTTGATTGGAAC 58.755 45.455 0.00 0.00 0.00 3.62
612 613 3.512219 TGGAACAAAATAAGGTCCGGT 57.488 42.857 0.00 0.00 31.92 5.28
651 656 9.768215 AATCAGGGAGGTGATTAAATTAGAAAA 57.232 29.630 0.00 0.00 43.85 2.29
652 657 8.807948 TCAGGGAGGTGATTAAATTAGAAAAG 57.192 34.615 0.00 0.00 0.00 2.27
653 658 8.611257 TCAGGGAGGTGATTAAATTAGAAAAGA 58.389 33.333 0.00 0.00 0.00 2.52
700 705 5.582953 AGGATGAAATGAAAACAGGGATGA 58.417 37.500 0.00 0.00 0.00 2.92
704 709 5.634118 TGAAATGAAAACAGGGATGAGAGT 58.366 37.500 0.00 0.00 0.00 3.24
706 711 6.655003 TGAAATGAAAACAGGGATGAGAGTAC 59.345 38.462 0.00 0.00 0.00 2.73
710 715 0.629596 ACAGGGATGAGAGTACGGGA 59.370 55.000 0.00 0.00 0.00 5.14
720 725 2.187163 GTACGGGAAGGGAGCAGC 59.813 66.667 0.00 0.00 0.00 5.25
733 738 4.802051 GCAGCCAAGCCGGATCCA 62.802 66.667 13.41 0.00 36.56 3.41
734 739 2.825836 CAGCCAAGCCGGATCCAC 60.826 66.667 13.41 2.73 36.56 4.02
736 741 3.134127 GCCAAGCCGGATCCACAC 61.134 66.667 13.41 0.00 36.56 3.82
737 742 2.350895 CCAAGCCGGATCCACACA 59.649 61.111 13.41 0.00 36.56 3.72
738 743 2.040544 CCAAGCCGGATCCACACAC 61.041 63.158 13.41 0.00 36.56 3.82
781 789 2.088180 GAGACGTGTCTCGATCGGT 58.912 57.895 16.41 3.44 45.49 4.69
784 792 0.167470 GACGTGTCTCGATCGGTTGA 59.833 55.000 16.41 8.66 42.86 3.18
786 794 1.202154 ACGTGTCTCGATCGGTTGATC 60.202 52.381 16.41 8.06 46.24 2.92
788 796 1.134367 GTGTCTCGATCGGTTGATCCA 59.866 52.381 16.41 4.45 46.89 3.41
790 798 2.194271 GTCTCGATCGGTTGATCCAAC 58.806 52.381 16.41 1.47 46.89 3.77
791 799 2.100197 TCTCGATCGGTTGATCCAACT 58.900 47.619 16.41 0.00 46.89 3.16
792 800 3.066342 GTCTCGATCGGTTGATCCAACTA 59.934 47.826 16.41 0.00 46.89 2.24
841 854 9.525409 AAGATTTTTCTTTTCATCAACTCACAG 57.475 29.630 0.00 0.00 0.00 3.66
848 861 9.559732 TTCTTTTCATCAACTCACAGATTAGAA 57.440 29.630 0.00 0.00 0.00 2.10
849 862 9.559732 TCTTTTCATCAACTCACAGATTAGAAA 57.440 29.630 0.00 0.00 0.00 2.52
897 913 0.390735 ACCCACGACGCAATAACTCC 60.391 55.000 0.00 0.00 0.00 3.85
913 929 0.984961 CTCCAATCTCTGCCCCTCCA 60.985 60.000 0.00 0.00 0.00 3.86
914 930 0.549902 TCCAATCTCTGCCCCTCCAA 60.550 55.000 0.00 0.00 0.00 3.53
931 947 1.090052 CAACGCGATCCCCTTCTTCC 61.090 60.000 15.93 0.00 0.00 3.46
934 950 1.068250 GCGATCCCCTTCTTCCTCG 59.932 63.158 0.00 0.00 0.00 4.63
938 954 0.691413 ATCCCCTTCTTCCTCGTCCC 60.691 60.000 0.00 0.00 0.00 4.46
939 955 1.306226 CCCCTTCTTCCTCGTCCCT 60.306 63.158 0.00 0.00 0.00 4.20
940 956 1.331399 CCCCTTCTTCCTCGTCCCTC 61.331 65.000 0.00 0.00 0.00 4.30
941 957 1.331399 CCCTTCTTCCTCGTCCCTCC 61.331 65.000 0.00 0.00 0.00 4.30
942 958 0.324830 CCTTCTTCCTCGTCCCTCCT 60.325 60.000 0.00 0.00 0.00 3.69
943 959 1.107945 CTTCTTCCTCGTCCCTCCTC 58.892 60.000 0.00 0.00 0.00 3.71
944 960 0.324460 TTCTTCCTCGTCCCTCCTCC 60.324 60.000 0.00 0.00 0.00 4.30
1209 1358 2.716017 CGCCTCCTCCTTCTCGCTT 61.716 63.158 0.00 0.00 0.00 4.68
1824 2117 3.711704 TCATCTTCTAATCACCACCCCTC 59.288 47.826 0.00 0.00 0.00 4.30
1825 2118 2.478292 TCTTCTAATCACCACCCCTCC 58.522 52.381 0.00 0.00 0.00 4.30
1855 2148 4.695455 CCAATTGTTCAATCGGTGAGTAGT 59.305 41.667 4.43 0.00 37.61 2.73
1856 2149 5.872617 CCAATTGTTCAATCGGTGAGTAGTA 59.127 40.000 4.43 0.00 37.61 1.82
1857 2150 6.036083 CCAATTGTTCAATCGGTGAGTAGTAG 59.964 42.308 4.43 0.00 37.61 2.57
1858 2151 4.106029 TGTTCAATCGGTGAGTAGTAGC 57.894 45.455 0.00 0.00 37.61 3.58
1860 2153 2.362736 TCAATCGGTGAGTAGTAGCGT 58.637 47.619 0.00 0.00 39.76 5.07
1861 2154 2.751259 TCAATCGGTGAGTAGTAGCGTT 59.249 45.455 0.00 0.00 39.76 4.84
1862 2155 3.192001 TCAATCGGTGAGTAGTAGCGTTT 59.808 43.478 0.00 0.00 39.76 3.60
1885 2178 3.780804 TGTTACCTACCTTGTGCACAT 57.219 42.857 22.39 8.69 0.00 3.21
1891 2184 3.068024 ACCTACCTTGTGCACATGTTTTG 59.932 43.478 22.39 12.17 0.00 2.44
1919 2216 7.928873 TCTAGGATTAGAAACCTTTTGGACAT 58.071 34.615 0.00 0.00 36.66 3.06
1920 2217 6.840780 AGGATTAGAAACCTTTTGGACATG 57.159 37.500 0.00 0.00 44.07 3.21
2111 2436 5.925509 TGTTCACCTAGAAAGTTTGCTAGT 58.074 37.500 15.17 6.46 38.13 2.57
2184 2509 4.705337 AACTTCTACTGTTCGAGCCTAG 57.295 45.455 0.00 0.00 0.00 3.02
2232 2557 4.986659 GCAATTGTGATGCTTTCTTTCACT 59.013 37.500 7.40 0.00 40.29 3.41
2258 2631 5.946298 TGCTGCTGATTTAGTTCATTTGAG 58.054 37.500 0.00 0.00 0.00 3.02
2314 2691 3.806949 TGGTTCTTAGCTGGATGGTTT 57.193 42.857 0.00 0.00 0.00 3.27
2375 3028 8.570488 TGCATGATTCATTATGTTATCCTCAAC 58.430 33.333 0.00 0.00 0.00 3.18
2386 3039 6.121776 TGTTATCCTCAACCTACACATTGT 57.878 37.500 0.00 0.00 0.00 2.71
2431 3506 6.732154 CCTTGCATCATGGTAGTTTATCAAG 58.268 40.000 0.00 0.00 0.00 3.02
2457 3726 7.587757 GCAATTGTTTACGCCATAAGATCTAAG 59.412 37.037 7.40 0.00 0.00 2.18
2493 4977 6.436843 AACCACTAAGCCAATAAGATTTCG 57.563 37.500 0.00 0.00 0.00 3.46
2652 5795 6.459923 AGATTAGTCAAATAGGATTCGCTCC 58.540 40.000 0.00 0.00 45.33 4.70
2662 5805 2.820330 GGATTCGCTCCTCAGAAGAAG 58.180 52.381 0.00 0.00 41.29 2.85
2697 5843 5.579119 TGTGCCATAGTATTGACTACAAACG 59.421 40.000 0.00 0.00 41.01 3.60
2711 5968 6.926826 TGACTACAAACGTAATCAACAGATGT 59.073 34.615 0.00 0.00 0.00 3.06
2714 5971 8.706035 ACTACAAACGTAATCAACAGATGTAAC 58.294 33.333 0.00 0.00 0.00 2.50
2731 5990 1.251251 AACCACAAGCCTGCTTCATC 58.749 50.000 0.42 0.00 33.42 2.92
2752 6011 6.753744 TCATCATATTATCCTCAATCTTCGCG 59.246 38.462 0.00 0.00 0.00 5.87
2755 6014 6.366061 TCATATTATCCTCAATCTTCGCGTTG 59.634 38.462 5.77 2.99 0.00 4.10
2757 6016 3.520290 ATCCTCAATCTTCGCGTTGTA 57.480 42.857 5.77 0.00 0.00 2.41
2787 6046 5.361857 AGAAATATTGCTAGCCTTGCATTGT 59.638 36.000 13.29 0.00 40.34 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 8.623903 CCATGCCTTGCGACATATATAAATTAT 58.376 33.333 0.00 0.00 0.00 1.28
33 34 7.609918 ACCATGCCTTGCGACATATATAAATTA 59.390 33.333 0.00 0.00 0.00 1.40
34 35 6.434028 ACCATGCCTTGCGACATATATAAATT 59.566 34.615 0.00 0.00 0.00 1.82
35 36 5.945784 ACCATGCCTTGCGACATATATAAAT 59.054 36.000 0.00 0.00 0.00 1.40
36 37 5.312895 ACCATGCCTTGCGACATATATAAA 58.687 37.500 0.00 0.00 0.00 1.40
37 38 4.905429 ACCATGCCTTGCGACATATATAA 58.095 39.130 0.00 0.00 0.00 0.98
38 39 4.551702 ACCATGCCTTGCGACATATATA 57.448 40.909 0.00 0.00 0.00 0.86
39 40 3.423539 ACCATGCCTTGCGACATATAT 57.576 42.857 0.00 0.00 0.00 0.86
40 41 2.928801 ACCATGCCTTGCGACATATA 57.071 45.000 0.00 0.00 0.00 0.86
41 42 2.928801 TACCATGCCTTGCGACATAT 57.071 45.000 0.00 0.00 0.00 1.78
42 43 2.928801 ATACCATGCCTTGCGACATA 57.071 45.000 0.00 0.00 0.00 2.29
43 44 2.368548 TCTATACCATGCCTTGCGACAT 59.631 45.455 0.00 0.00 0.00 3.06
44 45 1.760029 TCTATACCATGCCTTGCGACA 59.240 47.619 0.00 0.00 0.00 4.35
45 46 2.526304 TCTATACCATGCCTTGCGAC 57.474 50.000 0.00 0.00 0.00 5.19
46 47 2.289631 CCATCTATACCATGCCTTGCGA 60.290 50.000 0.00 0.00 0.00 5.10
47 48 2.079158 CCATCTATACCATGCCTTGCG 58.921 52.381 0.00 0.00 0.00 4.85
48 49 1.815003 GCCATCTATACCATGCCTTGC 59.185 52.381 0.00 0.00 0.00 4.01
49 50 2.224843 TGGCCATCTATACCATGCCTTG 60.225 50.000 0.00 0.00 0.00 3.61
50 51 2.065007 TGGCCATCTATACCATGCCTT 58.935 47.619 0.00 0.00 0.00 4.35
51 52 1.746157 TGGCCATCTATACCATGCCT 58.254 50.000 0.00 0.00 0.00 4.75
52 53 2.558359 GTTTGGCCATCTATACCATGCC 59.442 50.000 6.09 0.00 32.39 4.40
53 54 2.226437 CGTTTGGCCATCTATACCATGC 59.774 50.000 6.09 0.00 32.39 4.06
54 55 2.813754 CCGTTTGGCCATCTATACCATG 59.186 50.000 6.09 0.00 32.39 3.66
55 56 2.224769 CCCGTTTGGCCATCTATACCAT 60.225 50.000 6.09 0.00 32.39 3.55
56 57 1.142060 CCCGTTTGGCCATCTATACCA 59.858 52.381 6.09 0.00 0.00 3.25
57 58 1.892209 CCCGTTTGGCCATCTATACC 58.108 55.000 6.09 0.00 0.00 2.73
82 83 2.757099 GTGGGCTGGCCTGATTGG 60.757 66.667 21.72 0.00 39.35 3.16
83 84 3.136123 CGTGGGCTGGCCTGATTG 61.136 66.667 21.72 2.86 36.10 2.67
84 85 3.329889 TCGTGGGCTGGCCTGATT 61.330 61.111 21.72 0.00 36.10 2.57
85 86 3.790437 CTCGTGGGCTGGCCTGAT 61.790 66.667 21.72 0.00 36.10 2.90
92 93 4.435436 TAGCGTGCTCGTGGGCTG 62.435 66.667 10.18 0.00 39.49 4.85
93 94 4.135153 CTAGCGTGCTCGTGGGCT 62.135 66.667 10.18 0.74 39.49 5.19
95 96 4.435436 TGCTAGCGTGCTCGTGGG 62.435 66.667 10.77 1.61 39.49 4.61
96 97 3.181967 GTGCTAGCGTGCTCGTGG 61.182 66.667 10.77 1.95 39.49 4.94
97 98 3.536394 CGTGCTAGCGTGCTCGTG 61.536 66.667 10.77 2.27 42.54 4.35
98 99 3.733960 TCGTGCTAGCGTGCTCGT 61.734 61.111 20.86 0.00 45.98 4.18
99 100 3.241059 GTCGTGCTAGCGTGCTCG 61.241 66.667 10.77 17.57 46.83 5.03
100 101 2.881352 GGTCGTGCTAGCGTGCTC 60.881 66.667 10.77 0.00 0.00 4.26
101 102 4.436998 GGGTCGTGCTAGCGTGCT 62.437 66.667 10.77 0.00 0.00 4.40
103 104 4.415332 ACGGGTCGTGCTAGCGTG 62.415 66.667 10.77 4.86 39.18 5.34
104 105 4.112341 GACGGGTCGTGCTAGCGT 62.112 66.667 10.77 0.00 41.37 5.07
105 106 3.411418 ATGACGGGTCGTGCTAGCG 62.411 63.158 10.77 0.00 41.37 4.26
106 107 1.878522 CATGACGGGTCGTGCTAGC 60.879 63.158 8.10 8.10 41.37 3.42
107 108 1.226974 CCATGACGGGTCGTGCTAG 60.227 63.158 14.15 0.00 43.41 3.42
108 109 2.889617 CCATGACGGGTCGTGCTA 59.110 61.111 14.15 0.00 43.41 3.49
131 132 4.097863 GTTTAGCCCGTGCCGTGC 62.098 66.667 0.00 0.00 38.69 5.34
132 133 3.784412 CGTTTAGCCCGTGCCGTG 61.784 66.667 0.00 0.00 38.69 4.94
135 136 3.692370 ATCCCGTTTAGCCCGTGCC 62.692 63.158 0.00 0.00 38.69 5.01
136 137 2.124860 ATCCCGTTTAGCCCGTGC 60.125 61.111 0.00 0.00 37.95 5.34
137 138 1.078708 ACATCCCGTTTAGCCCGTG 60.079 57.895 0.00 0.00 0.00 4.94
138 139 1.078708 CACATCCCGTTTAGCCCGT 60.079 57.895 0.00 0.00 0.00 5.28
139 140 2.469516 GCACATCCCGTTTAGCCCG 61.470 63.158 0.00 0.00 0.00 6.13
140 141 2.119029 GGCACATCCCGTTTAGCCC 61.119 63.158 0.00 0.00 36.17 5.19
141 142 3.509659 GGCACATCCCGTTTAGCC 58.490 61.111 0.00 0.00 34.71 3.93
160 161 4.332637 CAAGGTGTGCTGCGTGCC 62.333 66.667 0.00 0.00 42.00 5.01
161 162 3.245948 CTCAAGGTGTGCTGCGTGC 62.246 63.158 0.00 0.00 43.25 5.34
162 163 2.941333 CTCAAGGTGTGCTGCGTG 59.059 61.111 0.00 0.00 0.00 5.34
163 164 2.974698 GCTCAAGGTGTGCTGCGT 60.975 61.111 0.00 0.00 34.37 5.24
164 165 3.730761 GGCTCAAGGTGTGCTGCG 61.731 66.667 0.00 0.00 37.09 5.18
165 166 1.930908 GATGGCTCAAGGTGTGCTGC 61.931 60.000 0.00 0.00 37.09 5.25
166 167 1.310933 GGATGGCTCAAGGTGTGCTG 61.311 60.000 2.71 0.00 37.09 4.41
167 168 1.001641 GGATGGCTCAAGGTGTGCT 60.002 57.895 2.71 0.00 37.09 4.40
168 169 0.682209 ATGGATGGCTCAAGGTGTGC 60.682 55.000 0.00 0.00 36.25 4.57
169 170 1.100510 CATGGATGGCTCAAGGTGTG 58.899 55.000 0.00 0.00 0.00 3.82
170 171 0.033796 CCATGGATGGCTCAAGGTGT 60.034 55.000 5.56 0.00 41.75 4.16
171 172 0.754217 CCCATGGATGGCTCAAGGTG 60.754 60.000 15.22 0.00 46.70 4.00
172 173 1.616921 CCCATGGATGGCTCAAGGT 59.383 57.895 15.22 0.00 46.70 3.50
173 174 1.831286 GCCCATGGATGGCTCAAGG 60.831 63.158 15.22 0.00 46.70 3.61
174 175 3.851955 GCCCATGGATGGCTCAAG 58.148 61.111 15.22 0.00 46.70 3.02
179 180 1.377994 CTCTAGGCCCATGGATGGC 59.622 63.158 15.22 10.13 46.70 4.40
191 192 4.537433 GCGTGCCCAGCCTCTAGG 62.537 72.222 0.00 0.00 38.53 3.02
192 193 4.880537 CGCGTGCCCAGCCTCTAG 62.881 72.222 0.00 0.00 0.00 2.43
220 221 0.666374 AAATAATAAGCGGGCCGTGC 59.334 50.000 28.82 12.03 0.00 5.34
221 222 3.430333 AAAAATAATAAGCGGGCCGTG 57.570 42.857 28.82 0.00 0.00 4.94
247 248 8.462811 ACACACACACACACATATTTCTAAAAA 58.537 29.630 0.00 0.00 0.00 1.94
248 249 7.912773 CACACACACACACACATATTTCTAAAA 59.087 33.333 0.00 0.00 0.00 1.52
249 250 7.066404 ACACACACACACACACATATTTCTAAA 59.934 33.333 0.00 0.00 0.00 1.85
250 251 6.540551 ACACACACACACACACATATTTCTAA 59.459 34.615 0.00 0.00 0.00 2.10
251 252 6.018343 CACACACACACACACACATATTTCTA 60.018 38.462 0.00 0.00 0.00 2.10
252 253 4.881273 ACACACACACACACACATATTTCT 59.119 37.500 0.00 0.00 0.00 2.52
253 254 4.969395 CACACACACACACACACATATTTC 59.031 41.667 0.00 0.00 0.00 2.17
254 255 4.397730 ACACACACACACACACACATATTT 59.602 37.500 0.00 0.00 0.00 1.40
255 256 3.944650 ACACACACACACACACACATATT 59.055 39.130 0.00 0.00 0.00 1.28
256 257 3.312146 CACACACACACACACACACATAT 59.688 43.478 0.00 0.00 0.00 1.78
257 258 2.675348 CACACACACACACACACACATA 59.325 45.455 0.00 0.00 0.00 2.29
258 259 1.468127 CACACACACACACACACACAT 59.532 47.619 0.00 0.00 0.00 3.21
259 260 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
260 261 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
261 262 1.598882 AACACACACACACACACACA 58.401 45.000 0.00 0.00 0.00 3.72
262 263 2.997303 TCTAACACACACACACACACAC 59.003 45.455 0.00 0.00 0.00 3.82
263 264 2.997303 GTCTAACACACACACACACACA 59.003 45.455 0.00 0.00 0.00 3.72
264 265 2.350498 GGTCTAACACACACACACACAC 59.650 50.000 0.00 0.00 0.00 3.82
265 266 2.235155 AGGTCTAACACACACACACACA 59.765 45.455 0.00 0.00 0.00 3.72
266 267 2.901249 AGGTCTAACACACACACACAC 58.099 47.619 0.00 0.00 0.00 3.82
267 268 4.739587 TTAGGTCTAACACACACACACA 57.260 40.909 0.00 0.00 0.00 3.72
268 269 6.613755 AATTTAGGTCTAACACACACACAC 57.386 37.500 0.00 0.00 0.00 3.82
269 270 7.273712 TGTAATTTAGGTCTAACACACACACA 58.726 34.615 0.00 0.00 0.00 3.72
270 271 7.570691 GCTGTAATTTAGGTCTAACACACACAC 60.571 40.741 0.00 0.00 0.00 3.82
271 272 6.425721 GCTGTAATTTAGGTCTAACACACACA 59.574 38.462 0.00 0.00 0.00 3.72
272 273 6.128363 GGCTGTAATTTAGGTCTAACACACAC 60.128 42.308 0.00 0.00 0.00 3.82
273 274 5.935789 GGCTGTAATTTAGGTCTAACACACA 59.064 40.000 0.00 0.00 0.00 3.72
274 275 5.935789 TGGCTGTAATTTAGGTCTAACACAC 59.064 40.000 0.00 0.00 0.00 3.82
275 276 6.116711 TGGCTGTAATTTAGGTCTAACACA 57.883 37.500 0.00 0.00 0.00 3.72
276 277 7.625828 AATGGCTGTAATTTAGGTCTAACAC 57.374 36.000 0.00 0.00 0.00 3.32
277 278 7.990886 CCTAATGGCTGTAATTTAGGTCTAACA 59.009 37.037 0.00 0.00 37.16 2.41
278 279 8.379457 CCTAATGGCTGTAATTTAGGTCTAAC 57.621 38.462 0.00 0.00 37.16 2.34
316 317 3.524541 GCATGTTTTTCAGCCTATTGGG 58.475 45.455 0.00 0.00 38.36 4.12
317 318 3.119531 TCGCATGTTTTTCAGCCTATTGG 60.120 43.478 0.00 0.00 0.00 3.16
318 319 3.853671 GTCGCATGTTTTTCAGCCTATTG 59.146 43.478 0.00 0.00 0.00 1.90
319 320 3.119495 GGTCGCATGTTTTTCAGCCTATT 60.119 43.478 0.00 0.00 0.00 1.73
320 321 2.423538 GGTCGCATGTTTTTCAGCCTAT 59.576 45.455 0.00 0.00 0.00 2.57
321 322 1.810151 GGTCGCATGTTTTTCAGCCTA 59.190 47.619 0.00 0.00 0.00 3.93
322 323 0.598065 GGTCGCATGTTTTTCAGCCT 59.402 50.000 0.00 0.00 0.00 4.58
323 324 0.388520 GGGTCGCATGTTTTTCAGCC 60.389 55.000 0.00 0.00 0.00 4.85
324 325 0.313672 TGGGTCGCATGTTTTTCAGC 59.686 50.000 0.00 0.00 0.00 4.26
325 326 1.608590 ACTGGGTCGCATGTTTTTCAG 59.391 47.619 0.00 0.56 0.00 3.02
326 327 1.686355 ACTGGGTCGCATGTTTTTCA 58.314 45.000 0.00 0.00 0.00 2.69
327 328 3.758300 CATACTGGGTCGCATGTTTTTC 58.242 45.455 0.00 0.00 0.00 2.29
328 329 2.094752 GCATACTGGGTCGCATGTTTTT 60.095 45.455 0.00 0.00 0.00 1.94
329 330 1.472480 GCATACTGGGTCGCATGTTTT 59.528 47.619 0.00 0.00 0.00 2.43
330 331 1.094785 GCATACTGGGTCGCATGTTT 58.905 50.000 0.00 0.00 0.00 2.83
331 332 0.253044 AGCATACTGGGTCGCATGTT 59.747 50.000 0.00 0.00 0.00 2.71
332 333 1.119684 TAGCATACTGGGTCGCATGT 58.880 50.000 0.00 0.00 0.00 3.21
333 334 2.238942 TTAGCATACTGGGTCGCATG 57.761 50.000 0.00 0.00 0.00 4.06
334 335 3.206150 CTTTTAGCATACTGGGTCGCAT 58.794 45.455 0.00 0.00 0.00 4.73
335 336 2.027561 ACTTTTAGCATACTGGGTCGCA 60.028 45.455 0.00 0.00 0.00 5.10
336 337 2.629051 ACTTTTAGCATACTGGGTCGC 58.371 47.619 0.00 0.00 0.00 5.19
337 338 4.117685 GGTACTTTTAGCATACTGGGTCG 58.882 47.826 0.00 0.00 0.00 4.79
338 339 4.874396 GTGGTACTTTTAGCATACTGGGTC 59.126 45.833 0.00 0.00 37.99 4.46
339 340 4.622220 CGTGGTACTTTTAGCATACTGGGT 60.622 45.833 0.00 0.00 37.99 4.51
340 341 3.869246 CGTGGTACTTTTAGCATACTGGG 59.131 47.826 0.00 0.00 37.99 4.45
341 342 3.869246 CCGTGGTACTTTTAGCATACTGG 59.131 47.826 0.00 0.00 37.99 4.00
342 343 3.869246 CCCGTGGTACTTTTAGCATACTG 59.131 47.826 0.00 0.00 37.99 2.74
343 344 3.680754 GCCCGTGGTACTTTTAGCATACT 60.681 47.826 0.00 0.00 37.99 2.12
344 345 2.610833 GCCCGTGGTACTTTTAGCATAC 59.389 50.000 0.00 0.00 37.99 2.39
345 346 2.420408 GGCCCGTGGTACTTTTAGCATA 60.420 50.000 0.00 0.00 37.99 3.14
346 347 1.680860 GGCCCGTGGTACTTTTAGCAT 60.681 52.381 0.00 0.00 37.99 3.79
347 348 0.321830 GGCCCGTGGTACTTTTAGCA 60.322 55.000 0.00 0.00 33.19 3.49
348 349 1.363885 CGGCCCGTGGTACTTTTAGC 61.364 60.000 0.00 0.00 0.00 3.09
349 350 0.741927 CCGGCCCGTGGTACTTTTAG 60.742 60.000 0.85 0.00 0.00 1.85
350 351 1.296068 CCGGCCCGTGGTACTTTTA 59.704 57.895 0.85 0.00 0.00 1.52
351 352 2.032987 CCGGCCCGTGGTACTTTT 59.967 61.111 0.85 0.00 0.00 2.27
352 353 4.710167 GCCGGCCCGTGGTACTTT 62.710 66.667 18.11 0.00 0.00 2.66
359 360 4.708386 TAAACAGGCCGGCCCGTG 62.708 66.667 41.72 34.33 39.21 4.94
360 361 1.912826 TATTAAACAGGCCGGCCCGT 61.913 55.000 41.72 35.53 39.21 5.28
361 362 0.748729 TTATTAAACAGGCCGGCCCG 60.749 55.000 41.72 34.72 39.21 6.13
362 363 0.742505 GTTATTAAACAGGCCGGCCC 59.257 55.000 41.72 23.87 35.56 5.80
363 364 0.742505 GGTTATTAAACAGGCCGGCC 59.257 55.000 39.29 39.29 37.34 6.13
364 365 1.404035 CTGGTTATTAAACAGGCCGGC 59.596 52.381 21.18 21.18 37.34 6.13
365 366 2.021457 CCTGGTTATTAAACAGGCCGG 58.979 52.381 23.99 0.00 37.34 6.13
366 367 1.404035 GCCTGGTTATTAAACAGGCCG 59.596 52.381 38.77 18.69 44.97 6.13
369 370 4.583073 GGTATGGCCTGGTTATTAAACAGG 59.417 45.833 28.91 28.91 37.34 4.00
370 371 5.767816 GGTATGGCCTGGTTATTAAACAG 57.232 43.478 13.54 13.54 37.34 3.16
384 385 2.808206 CCTCGTCCCAGGTATGGCC 61.808 68.421 0.00 0.00 46.19 5.36
385 386 1.749334 CTCCTCGTCCCAGGTATGGC 61.749 65.000 0.00 0.00 46.19 4.40
387 388 1.742768 GCTCCTCGTCCCAGGTATG 59.257 63.158 0.00 0.00 34.76 2.39
388 389 1.828660 CGCTCCTCGTCCCAGGTAT 60.829 63.158 0.00 0.00 34.76 2.73
389 390 2.439701 CGCTCCTCGTCCCAGGTA 60.440 66.667 0.00 0.00 34.76 3.08
422 423 2.852495 AATAGCCCGGTCGTGCTGTG 62.852 60.000 12.59 0.00 38.52 3.66
423 424 2.656069 AATAGCCCGGTCGTGCTGT 61.656 57.895 12.59 3.66 38.52 4.40
424 425 2.173669 CAATAGCCCGGTCGTGCTG 61.174 63.158 12.59 0.00 38.52 4.41
425 426 2.186903 CAATAGCCCGGTCGTGCT 59.813 61.111 8.07 8.07 41.57 4.40
426 427 1.883084 CTCAATAGCCCGGTCGTGC 60.883 63.158 0.00 0.00 0.00 5.34
427 428 1.227263 CCTCAATAGCCCGGTCGTG 60.227 63.158 0.00 0.00 0.00 4.35
428 429 3.090219 GCCTCAATAGCCCGGTCGT 62.090 63.158 0.00 0.00 0.00 4.34
429 430 2.280186 GCCTCAATAGCCCGGTCG 60.280 66.667 0.00 0.00 0.00 4.79
430 431 2.111251 GGCCTCAATAGCCCGGTC 59.889 66.667 0.00 0.00 45.16 4.79
435 436 2.902343 GGCACGGCCTCAATAGCC 60.902 66.667 0.00 0.85 46.69 3.93
462 463 4.341502 CTGGCCAAACGGGTTGCG 62.342 66.667 7.01 0.00 39.65 4.85
463 464 4.662961 GCTGGCCAAACGGGTTGC 62.663 66.667 7.01 0.00 39.65 4.17
464 465 2.912025 AGCTGGCCAAACGGGTTG 60.912 61.111 7.01 0.00 39.65 3.77
465 466 2.597510 GAGCTGGCCAAACGGGTT 60.598 61.111 7.01 0.00 39.65 4.11
466 467 3.570212 AGAGCTGGCCAAACGGGT 61.570 61.111 7.01 0.00 39.65 5.28
467 468 3.058160 CAGAGCTGGCCAAACGGG 61.058 66.667 7.01 0.00 40.85 5.28
468 469 2.032528 TCAGAGCTGGCCAAACGG 59.967 61.111 7.01 1.97 0.00 4.44
469 470 0.957395 ATGTCAGAGCTGGCCAAACG 60.957 55.000 7.01 0.00 33.48 3.60
470 471 0.524862 CATGTCAGAGCTGGCCAAAC 59.475 55.000 7.01 1.16 33.48 2.93
471 472 0.609957 CCATGTCAGAGCTGGCCAAA 60.610 55.000 7.01 0.00 33.48 3.28
472 473 1.001764 CCATGTCAGAGCTGGCCAA 60.002 57.895 7.01 0.00 33.48 4.52
473 474 1.919816 TCCATGTCAGAGCTGGCCA 60.920 57.895 4.71 4.71 33.48 5.36
474 475 1.451028 GTCCATGTCAGAGCTGGCC 60.451 63.158 0.00 0.00 33.48 5.36
475 476 0.321919 TTGTCCATGTCAGAGCTGGC 60.322 55.000 0.00 0.00 35.37 4.85
476 477 2.093075 AGATTGTCCATGTCAGAGCTGG 60.093 50.000 0.00 0.00 0.00 4.85
477 478 3.263489 AGATTGTCCATGTCAGAGCTG 57.737 47.619 0.00 0.00 0.00 4.24
478 479 3.518705 AGAAGATTGTCCATGTCAGAGCT 59.481 43.478 0.00 0.00 0.00 4.09
479 480 3.622163 CAGAAGATTGTCCATGTCAGAGC 59.378 47.826 0.00 0.00 0.00 4.09
480 481 3.622163 GCAGAAGATTGTCCATGTCAGAG 59.378 47.826 0.00 0.00 0.00 3.35
481 482 3.262660 AGCAGAAGATTGTCCATGTCAGA 59.737 43.478 0.00 0.00 0.00 3.27
482 483 3.374367 CAGCAGAAGATTGTCCATGTCAG 59.626 47.826 0.00 0.00 0.00 3.51
483 484 3.340928 CAGCAGAAGATTGTCCATGTCA 58.659 45.455 0.00 0.00 0.00 3.58
484 485 2.097142 GCAGCAGAAGATTGTCCATGTC 59.903 50.000 0.00 0.00 0.00 3.06
485 486 2.089980 GCAGCAGAAGATTGTCCATGT 58.910 47.619 0.00 0.00 0.00 3.21
486 487 2.089201 TGCAGCAGAAGATTGTCCATG 58.911 47.619 0.00 0.00 0.00 3.66
487 488 2.490903 GTTGCAGCAGAAGATTGTCCAT 59.509 45.455 0.00 0.00 0.00 3.41
488 489 1.881973 GTTGCAGCAGAAGATTGTCCA 59.118 47.619 0.00 0.00 0.00 4.02
489 490 1.135859 CGTTGCAGCAGAAGATTGTCC 60.136 52.381 0.24 0.00 0.00 4.02
490 491 1.135859 CCGTTGCAGCAGAAGATTGTC 60.136 52.381 0.24 0.00 0.00 3.18
491 492 0.877071 CCGTTGCAGCAGAAGATTGT 59.123 50.000 0.24 0.00 0.00 2.71
492 493 0.877071 ACCGTTGCAGCAGAAGATTG 59.123 50.000 0.24 0.00 0.00 2.67
493 494 0.877071 CACCGTTGCAGCAGAAGATT 59.123 50.000 0.24 0.00 0.00 2.40
494 495 0.035317 TCACCGTTGCAGCAGAAGAT 59.965 50.000 0.24 0.00 0.00 2.40
495 496 0.601046 CTCACCGTTGCAGCAGAAGA 60.601 55.000 0.24 0.00 0.00 2.87
496 497 1.572085 CCTCACCGTTGCAGCAGAAG 61.572 60.000 0.24 0.00 0.00 2.85
497 498 1.597854 CCTCACCGTTGCAGCAGAA 60.598 57.895 0.24 0.00 0.00 3.02
498 499 2.031012 CCTCACCGTTGCAGCAGA 59.969 61.111 0.24 0.00 0.00 4.26
499 500 2.031012 TCCTCACCGTTGCAGCAG 59.969 61.111 0.24 0.00 0.00 4.24
500 501 2.280797 GTCCTCACCGTTGCAGCA 60.281 61.111 0.24 0.00 0.00 4.41
501 502 3.414700 CGTCCTCACCGTTGCAGC 61.415 66.667 0.00 0.00 0.00 5.25
502 503 3.414700 GCGTCCTCACCGTTGCAG 61.415 66.667 0.00 0.00 0.00 4.41
503 504 4.228567 TGCGTCCTCACCGTTGCA 62.229 61.111 0.00 0.00 0.00 4.08
504 505 3.712881 GTGCGTCCTCACCGTTGC 61.713 66.667 0.00 0.00 0.00 4.17
505 506 2.279851 TGTGCGTCCTCACCGTTG 60.280 61.111 0.00 0.00 36.17 4.10
506 507 2.279918 GTGTGCGTCCTCACCGTT 60.280 61.111 0.00 0.00 36.17 4.44
507 508 4.295119 GGTGTGCGTCCTCACCGT 62.295 66.667 0.00 0.00 43.35 4.83
510 511 1.664965 GTCAGGTGTGCGTCCTCAC 60.665 63.158 0.00 0.00 37.48 3.51
511 512 2.734591 GTCAGGTGTGCGTCCTCA 59.265 61.111 0.00 0.00 32.37 3.86
512 513 2.430921 CGTCAGGTGTGCGTCCTC 60.431 66.667 0.00 0.00 32.37 3.71
513 514 2.910479 TCGTCAGGTGTGCGTCCT 60.910 61.111 0.00 0.00 35.45 3.85
514 515 2.430921 CTCGTCAGGTGTGCGTCC 60.431 66.667 0.00 0.00 0.00 4.79
515 516 1.729838 GTCTCGTCAGGTGTGCGTC 60.730 63.158 0.00 0.00 0.00 5.19
516 517 1.735376 AAGTCTCGTCAGGTGTGCGT 61.735 55.000 0.00 0.00 0.00 5.24
517 518 1.007271 AAGTCTCGTCAGGTGTGCG 60.007 57.895 0.00 0.00 0.00 5.34
518 519 1.560860 GCAAGTCTCGTCAGGTGTGC 61.561 60.000 0.00 0.00 0.00 4.57
519 520 0.946221 GGCAAGTCTCGTCAGGTGTG 60.946 60.000 0.00 0.00 0.00 3.82
520 521 1.115930 AGGCAAGTCTCGTCAGGTGT 61.116 55.000 0.00 0.00 0.00 4.16
521 522 0.668706 CAGGCAAGTCTCGTCAGGTG 60.669 60.000 0.00 0.00 0.00 4.00
522 523 1.668294 CAGGCAAGTCTCGTCAGGT 59.332 57.895 0.00 0.00 0.00 4.00
523 524 1.739562 GCAGGCAAGTCTCGTCAGG 60.740 63.158 0.00 0.00 0.00 3.86
524 525 0.735632 GAGCAGGCAAGTCTCGTCAG 60.736 60.000 0.00 0.00 0.00 3.51
525 526 1.290324 GAGCAGGCAAGTCTCGTCA 59.710 57.895 0.00 0.00 0.00 4.35
597 598 2.089201 GGTGGACCGGACCTTATTTTG 58.911 52.381 23.51 0.00 0.00 2.44
685 690 4.383118 CCGTACTCTCATCCCTGTTTTCAT 60.383 45.833 0.00 0.00 0.00 2.57
688 693 2.236395 CCCGTACTCTCATCCCTGTTTT 59.764 50.000 0.00 0.00 0.00 2.43
689 694 1.831736 CCCGTACTCTCATCCCTGTTT 59.168 52.381 0.00 0.00 0.00 2.83
691 696 0.629596 TCCCGTACTCTCATCCCTGT 59.370 55.000 0.00 0.00 0.00 4.00
694 699 1.041437 CCTTCCCGTACTCTCATCCC 58.959 60.000 0.00 0.00 0.00 3.85
700 705 0.684805 CTGCTCCCTTCCCGTACTCT 60.685 60.000 0.00 0.00 0.00 3.24
704 709 3.081409 GGCTGCTCCCTTCCCGTA 61.081 66.667 0.00 0.00 0.00 4.02
706 711 3.984193 CTTGGCTGCTCCCTTCCCG 62.984 68.421 0.00 0.00 0.00 5.14
710 715 4.729918 CGGCTTGGCTGCTCCCTT 62.730 66.667 0.00 0.00 0.00 3.95
720 725 2.040544 GTGTGTGGATCCGGCTTGG 61.041 63.158 7.39 0.00 40.09 3.61
781 789 9.967451 TCTGGTAAACAAATATAGTTGGATCAA 57.033 29.630 16.58 0.00 32.50 2.57
784 792 8.889717 CGTTCTGGTAAACAAATATAGTTGGAT 58.110 33.333 16.58 7.69 32.50 3.41
786 794 8.259049 TCGTTCTGGTAAACAAATATAGTTGG 57.741 34.615 16.58 0.21 32.50 3.77
858 871 1.060713 CGGATCGGATCGGAAATTCG 58.939 55.000 17.77 7.72 0.00 3.34
859 872 2.059541 GTCGGATCGGATCGGAAATTC 58.940 52.381 24.28 12.10 39.80 2.17
897 913 0.745845 CGTTGGAGGGGCAGAGATTG 60.746 60.000 0.00 0.00 0.00 2.67
913 929 1.221021 GGAAGAAGGGGATCGCGTT 59.779 57.895 16.49 16.49 0.00 4.84
914 930 1.677637 GAGGAAGAAGGGGATCGCGT 61.678 60.000 5.77 0.83 0.00 6.01
931 947 2.123640 GGGAGGAGGAGGGACGAG 60.124 72.222 0.00 0.00 0.00 4.18
934 950 4.077180 ACGGGGAGGAGGAGGGAC 62.077 72.222 0.00 0.00 0.00 4.46
938 954 1.758906 GGAAGACGGGGAGGAGGAG 60.759 68.421 0.00 0.00 0.00 3.69
939 955 2.363361 GGAAGACGGGGAGGAGGA 59.637 66.667 0.00 0.00 0.00 3.71
940 956 2.764547 GGGAAGACGGGGAGGAGG 60.765 72.222 0.00 0.00 0.00 4.30
941 957 2.764547 GGGGAAGACGGGGAGGAG 60.765 72.222 0.00 0.00 0.00 3.69
942 958 4.410033 GGGGGAAGACGGGGAGGA 62.410 72.222 0.00 0.00 0.00 3.71
1209 1358 3.307906 ACGTACTTGGCCTCGGCA 61.308 61.111 10.51 0.00 44.11 5.69
1861 2154 4.705507 TGTGCACAAGGTAGGTAACAAAAA 59.294 37.500 19.28 0.00 41.41 1.94
1862 2155 4.270834 TGTGCACAAGGTAGGTAACAAAA 58.729 39.130 19.28 0.00 41.41 2.44
1885 2178 7.928873 AGGTTTCTAATCCTAGATCCAAAACA 58.071 34.615 0.00 0.00 34.06 2.83
1891 2184 7.499563 GTCCAAAAGGTTTCTAATCCTAGATCC 59.500 40.741 0.00 0.00 34.06 3.36
1919 2216 8.787852 CACAGCTAACACATCTATCTATCTACA 58.212 37.037 0.00 0.00 0.00 2.74
1920 2217 9.004717 TCACAGCTAACACATCTATCTATCTAC 57.995 37.037 0.00 0.00 0.00 2.59
2111 2436 5.666462 TGAATAAGCTACCGTAATGCTTGA 58.334 37.500 12.90 1.89 45.21 3.02
2153 2478 9.420551 CTCGAACAGTAGAAGTTTATAACCTTT 57.579 33.333 0.00 0.00 0.00 3.11
2232 2557 6.151480 TCAAATGAACTAAATCAGCAGCATCA 59.849 34.615 0.00 0.00 31.76 3.07
2258 2631 5.408604 CCACAATCCTTGTTAGACACTACAC 59.591 44.000 0.00 0.00 43.23 2.90
2375 3028 7.687941 AATTTCTAGGTGAACAATGTGTAGG 57.312 36.000 0.00 0.00 33.88 3.18
2378 3031 6.701400 GCAAAATTTCTAGGTGAACAATGTGT 59.299 34.615 0.00 0.00 33.88 3.72
2386 3039 5.570320 AGGCTAGCAAAATTTCTAGGTGAA 58.430 37.500 18.24 0.00 34.38 3.18
2431 3506 5.821204 AGATCTTATGGCGTAAACAATTGC 58.179 37.500 5.05 0.00 0.00 3.56
2457 3726 6.150474 TGGCTTAGTGGTTTAACATTAGAAGC 59.850 38.462 10.41 10.41 0.00 3.86
2478 4962 2.609459 CGCTCACGAAATCTTATTGGCT 59.391 45.455 0.00 0.00 43.93 4.75
2554 5695 6.631016 TCAATCGATATGTATCCAGGCTTAC 58.369 40.000 0.00 0.00 0.00 2.34
2556 5697 5.337894 CCTCAATCGATATGTATCCAGGCTT 60.338 44.000 0.00 0.00 0.00 4.35
2675 5821 5.726397 ACGTTTGTAGTCAATACTATGGCA 58.274 37.500 0.00 0.00 40.30 4.92
2686 5832 6.926826 ACATCTGTTGATTACGTTTGTAGTCA 59.073 34.615 0.00 0.00 43.17 3.41
2687 5833 7.347508 ACATCTGTTGATTACGTTTGTAGTC 57.652 36.000 0.00 0.00 37.70 2.59
2697 5843 6.314784 GCTTGTGGTTACATCTGTTGATTAC 58.685 40.000 0.00 0.00 36.53 1.89
2711 5968 2.224744 TGATGAAGCAGGCTTGTGGTTA 60.225 45.455 11.85 0.00 38.25 2.85
2714 5971 1.471119 ATGATGAAGCAGGCTTGTGG 58.529 50.000 11.85 0.00 36.26 4.17
2731 5990 6.146184 ACAACGCGAAGATTGAGGATAATATG 59.854 38.462 15.93 0.00 0.00 1.78
2752 6011 7.041984 GGCTAGCAATATTTCTAGGTGTACAAC 60.042 40.741 19.56 1.50 34.38 3.32
2755 6014 6.760291 AGGCTAGCAATATTTCTAGGTGTAC 58.240 40.000 19.56 6.32 34.38 2.90
2757 6016 5.896073 AGGCTAGCAATATTTCTAGGTGT 57.104 39.130 19.56 0.00 34.38 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.