Multiple sequence alignment - TraesCS2D01G521100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G521100 chr2D 100.000 3309 0 0 1 3309 609883164 609886472 0.000000e+00 6111.0
1 TraesCS2D01G521100 chr2D 77.647 595 107 20 1060 1645 609868831 609869408 4.090000e-89 339.0
2 TraesCS2D01G521100 chr2D 84.345 313 47 2 1014 1325 554552368 554552679 4.150000e-79 305.0
3 TraesCS2D01G521100 chr2D 83.019 318 48 6 1009 1323 545047910 545047596 1.940000e-72 283.0
4 TraesCS2D01G521100 chr2D 85.542 166 18 5 1 166 307059096 307059255 5.680000e-38 169.0
5 TraesCS2D01G521100 chr2D 92.857 42 3 0 2893 2934 636939923 636939964 9.910000e-06 62.1
6 TraesCS2D01G521100 chr2B 84.615 2353 263 55 679 2962 744198154 744200476 0.000000e+00 2248.0
7 TraesCS2D01G521100 chr2B 78.392 1194 219 24 991 2172 744178860 744180026 0.000000e+00 739.0
8 TraesCS2D01G521100 chr2B 85.000 280 42 0 1009 1288 651962731 651962452 5.400000e-73 285.0
9 TraesCS2D01G521100 chr2B 79.835 243 41 8 1046 1284 661191888 661192126 1.580000e-38 171.0
10 TraesCS2D01G521100 chr2B 80.272 147 21 4 2262 2402 744180084 744180228 1.620000e-18 104.0
11 TraesCS2D01G521100 chr2A 82.656 1551 208 32 879 2395 742757283 742758806 0.000000e+00 1317.0
12 TraesCS2D01G521100 chr2A 87.735 905 102 5 1734 2630 742764063 742764966 0.000000e+00 1048.0
13 TraesCS2D01G521100 chr2A 83.797 1006 105 31 770 1726 742763010 742764006 0.000000e+00 902.0
14 TraesCS2D01G521100 chr2A 90.438 617 47 9 56 667 742755999 742756608 0.000000e+00 802.0
15 TraesCS2D01G521100 chr2A 96.716 335 10 1 2629 2962 742765204 742765538 1.040000e-154 556.0
16 TraesCS2D01G521100 chr2A 78.331 683 126 14 1733 2402 742750855 742751528 3.950000e-114 422.0
17 TraesCS2D01G521100 chr2A 82.083 480 69 15 1783 2252 743550862 743550390 8.610000e-106 394.0
18 TraesCS2D01G521100 chr2A 80.739 379 47 14 2406 2778 742758848 742759206 4.210000e-69 272.0
19 TraesCS2D01G521100 chr2A 87.324 213 9 5 670 875 742756742 742756943 9.240000e-56 228.0
20 TraesCS2D01G521100 chr2A 88.276 145 16 1 1 145 742755903 742756046 4.390000e-39 172.0
21 TraesCS2D01G521100 chr2A 80.769 182 23 5 924 1100 742732716 742732890 7.450000e-27 132.0
22 TraesCS2D01G521100 chr2A 97.297 37 1 0 668 704 742756627 742756663 2.760000e-06 63.9
23 TraesCS2D01G521100 chr1A 86.268 568 61 7 3 567 580281069 580281622 4.720000e-168 601.0
24 TraesCS2D01G521100 chr4D 88.866 476 48 4 107 578 45639677 45639203 6.160000e-162 580.0
25 TraesCS2D01G521100 chr4D 91.133 406 33 2 175 577 496030549 496030954 6.240000e-152 547.0
26 TraesCS2D01G521100 chr6D 91.729 399 30 2 175 570 10899190 10899588 4.830000e-153 551.0
27 TraesCS2D01G521100 chr5D 91.337 404 32 2 175 575 476712302 476711899 1.740000e-152 549.0
28 TraesCS2D01G521100 chr7D 90.732 410 34 3 175 580 498487947 498488356 8.080000e-151 544.0
29 TraesCS2D01G521100 chr7D 90.291 412 33 5 175 581 174974969 174974560 1.750000e-147 532.0
30 TraesCS2D01G521100 chr1D 91.089 404 33 2 175 575 450577160 450576757 8.080000e-151 544.0
31 TraesCS2D01G521100 chr1D 86.093 151 17 4 1 151 480367812 480367666 3.420000e-35 159.0
32 TraesCS2D01G521100 chr6B 91.534 189 14 2 4 190 623353598 623353786 3.280000e-65 259.0
33 TraesCS2D01G521100 chr5B 88.462 182 18 3 9 190 631468227 631468049 2.000000e-52 217.0
34 TraesCS2D01G521100 chr5B 85.417 192 20 6 1 190 467140336 467140151 3.370000e-45 193.0
35 TraesCS2D01G521100 chr1B 88.194 144 15 2 1 144 512974314 512974173 1.580000e-38 171.0
36 TraesCS2D01G521100 chr3D 85.542 166 16 6 1 163 542368153 542368313 2.040000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G521100 chr2D 609883164 609886472 3308 False 6111.000000 6111 100.000000 1 3309 1 chr2D.!!$F4 3308
1 TraesCS2D01G521100 chr2D 609868831 609869408 577 False 339.000000 339 77.647000 1060 1645 1 chr2D.!!$F3 585
2 TraesCS2D01G521100 chr2B 744198154 744200476 2322 False 2248.000000 2248 84.615000 679 2962 1 chr2B.!!$F2 2283
3 TraesCS2D01G521100 chr2B 744178860 744180228 1368 False 421.500000 739 79.332000 991 2402 2 chr2B.!!$F3 1411
4 TraesCS2D01G521100 chr2A 742755903 742765538 9635 False 595.655556 1317 88.330889 1 2962 9 chr2A.!!$F3 2961
5 TraesCS2D01G521100 chr2A 742750855 742751528 673 False 422.000000 422 78.331000 1733 2402 1 chr2A.!!$F2 669
6 TraesCS2D01G521100 chr1A 580281069 580281622 553 False 601.000000 601 86.268000 3 567 1 chr1A.!!$F1 564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
875 1058 0.04109 TTTGGCCCCTTCAGATTCCC 59.959 55.0 0.0 0.0 0.0 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2581 9064 0.179037 CATCGACCAGTGGATGCCAT 60.179 55.0 18.4 0.0 38.58 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
211 252 2.690881 ATTCCGGTGGCCAGGCTA 60.691 61.111 5.11 0.81 0.00 3.93
220 261 1.207488 TGGCCAGGCTAAGGTCATGT 61.207 55.000 12.43 0.00 35.45 3.21
230 271 1.480212 AAGGTCATGTGAGGCCACGA 61.480 55.000 5.01 0.00 46.06 4.35
313 354 1.453155 GGTGTGCGGTGATGAATTCT 58.547 50.000 7.05 0.00 0.00 2.40
314 355 1.131126 GGTGTGCGGTGATGAATTCTG 59.869 52.381 7.05 0.00 0.00 3.02
315 356 1.131126 GTGTGCGGTGATGAATTCTGG 59.869 52.381 7.05 0.00 0.00 3.86
329 370 1.823169 TTCTGGCGAGTTTAGGGCGT 61.823 55.000 0.00 0.00 0.00 5.68
337 378 3.799232 GCGAGTTTAGGGCGTATTCTGAT 60.799 47.826 0.00 0.00 0.00 2.90
416 457 0.179045 ATTCGGCCTTCCAATCTCCG 60.179 55.000 0.00 0.00 41.30 4.63
465 507 4.150359 TCGGTGGCCCTTAAAATTTTACA 58.850 39.130 10.18 2.53 0.00 2.41
496 538 6.221659 ACCACTTTTACGGTTTTTGTTTTGA 58.778 32.000 0.00 0.00 28.43 2.69
530 572 8.690680 TTCAACTAAAACTGTAAAACGCAAAT 57.309 26.923 0.00 0.00 0.00 2.32
594 638 4.053295 TCTAACGTCGGTCTTTTTCCTTG 58.947 43.478 0.00 0.00 0.00 3.61
620 664 0.409484 CAGGGGATTCTTTGGTGGGT 59.591 55.000 0.00 0.00 0.00 4.51
731 907 1.737236 GTGAATTGGTCATACGCAGCA 59.263 47.619 0.00 0.00 38.90 4.41
767 943 1.152963 ACGCCTGCAACAACTTCCT 60.153 52.632 0.00 0.00 0.00 3.36
805 981 1.996191 GAGGCTCAACATCTTCACGTC 59.004 52.381 10.25 0.00 0.00 4.34
840 1019 3.489398 GCTCTACACGTACTCCAATGAGG 60.489 52.174 0.00 0.00 43.29 3.86
875 1058 0.041090 TTTGGCCCCTTCAGATTCCC 59.959 55.000 0.00 0.00 0.00 3.97
919 1438 7.602644 TGGCTGATATTTAAAGGATCGTGTATC 59.397 37.037 0.00 0.00 0.00 2.24
920 1439 7.602644 GGCTGATATTTAAAGGATCGTGTATCA 59.397 37.037 0.00 0.00 36.20 2.15
943 1462 0.318762 ACCTCAACTCGTCTTCCTGC 59.681 55.000 0.00 0.00 0.00 4.85
978 1497 4.444306 CCTCAGAAGTTACAAGTTCCACCA 60.444 45.833 6.02 0.00 38.77 4.17
1026 1545 2.861101 ATCGGCCATGTCGAGCGAT 61.861 57.895 2.24 0.00 44.58 4.58
1031 1550 2.278792 CATGTCGAGCGATGGCGA 60.279 61.111 0.00 0.00 46.35 5.54
1073 1592 4.560128 CTGTTCATCGACAAGGAGAAGAA 58.440 43.478 0.00 0.00 0.00 2.52
1096 7494 1.523154 GGTGCTGTTTGCGGAATCCA 61.523 55.000 0.00 0.00 46.63 3.41
1143 7541 1.846712 GCTTCCTCACCCTGCCTCTT 61.847 60.000 0.00 0.00 0.00 2.85
1216 7614 0.737715 GCTGTACAAGAGCGTGGAGG 60.738 60.000 0.00 0.00 0.00 4.30
1217 7615 0.603569 CTGTACAAGAGCGTGGAGGT 59.396 55.000 0.00 0.00 0.00 3.85
1239 7637 4.410400 GGCCCGGACCACTTCCAG 62.410 72.222 0.73 0.00 46.29 3.86
1266 7664 1.026182 CGTGCAAGGCCATGCTTCTA 61.026 55.000 31.11 10.54 46.54 2.10
1268 7666 1.133790 GTGCAAGGCCATGCTTCTAAG 59.866 52.381 31.11 0.00 46.54 2.18
1332 7730 3.506455 TGAAAGTTGTCGACAAAAACCCA 59.494 39.130 31.20 20.95 37.63 4.51
1351 7749 4.400884 ACCCAATGTATCGCTGCAAAAATA 59.599 37.500 0.00 0.00 0.00 1.40
1356 7754 5.403897 TGTATCGCTGCAAAAATACTAGC 57.596 39.130 0.00 0.00 0.00 3.42
1362 7760 1.742831 TGCAAAAATACTAGCTGCGGG 59.257 47.619 0.00 0.00 35.76 6.13
1363 7761 1.533965 GCAAAAATACTAGCTGCGGGC 60.534 52.381 0.00 0.00 42.19 6.13
1369 7767 0.539518 TACTAGCTGCGGGCATTCAA 59.460 50.000 0.00 0.00 44.79 2.69
1374 7772 0.803380 GCTGCGGGCATTCAACATTC 60.803 55.000 0.00 0.00 41.35 2.67
1380 7778 2.097825 GGGCATTCAACATTCAGCTCT 58.902 47.619 0.00 0.00 0.00 4.09
1437 7835 0.750850 AGTACATCGGGGAATGGACG 59.249 55.000 0.00 0.00 43.95 4.79
1446 7844 2.510613 GGGGAATGGACGAACAAGAAA 58.489 47.619 0.00 0.00 0.00 2.52
1497 7898 2.738314 GGATGCAGTTTTTGTCATTGGC 59.262 45.455 0.00 0.00 0.00 4.52
1500 7901 2.200899 GCAGTTTTTGTCATTGGCGTT 58.799 42.857 0.00 0.00 0.00 4.84
1503 7904 1.071568 GTTTTTGTCATTGGCGTTGCG 60.072 47.619 0.00 0.00 0.00 4.85
1513 7914 1.225745 GGCGTTGCGAAGTTCATCG 60.226 57.895 3.32 3.11 45.41 3.84
1542 7943 0.034670 ATCTCCAAGTTGCTCCTGCC 60.035 55.000 0.00 0.00 38.71 4.85
1551 7952 1.418097 TTGCTCCTGCCTCCACAAGA 61.418 55.000 0.00 0.00 38.71 3.02
1554 7955 1.561643 CTCCTGCCTCCACAAGAGTA 58.438 55.000 0.00 0.00 41.47 2.59
1602 8003 6.505044 GGTATACCGGAAAAAGTGAACATT 57.495 37.500 9.46 0.00 0.00 2.71
1645 8046 1.722034 TTCTGCCAAGGTCTGTCTCT 58.278 50.000 0.00 0.00 0.00 3.10
1653 8056 2.491693 CAAGGTCTGTCTCTCACTCTCC 59.508 54.545 0.00 0.00 0.00 3.71
1655 8058 1.091537 GTCTGTCTCTCACTCTCCCG 58.908 60.000 0.00 0.00 0.00 5.14
1671 8080 0.680921 CCCGGCCTGTGAACATGAAT 60.681 55.000 0.00 0.00 0.00 2.57
1674 8083 2.752354 CCGGCCTGTGAACATGAATTTA 59.248 45.455 0.00 0.00 0.00 1.40
1682 8091 7.489113 GCCTGTGAACATGAATTTACCAAATAG 59.511 37.037 0.00 0.00 0.00 1.73
1683 8092 8.522830 CCTGTGAACATGAATTTACCAAATAGT 58.477 33.333 0.00 0.00 0.00 2.12
1759 8223 7.894708 TGCATTTCTTTCAGATGATTGGTTTA 58.105 30.769 0.00 0.00 0.00 2.01
1760 8224 8.533657 TGCATTTCTTTCAGATGATTGGTTTAT 58.466 29.630 0.00 0.00 0.00 1.40
1844 8308 2.324860 CAAATGCTGCAGACATGTGTG 58.675 47.619 20.43 18.25 29.62 3.82
1864 8328 3.758554 GTGTGCTCCCTGACAATATGTTT 59.241 43.478 0.00 0.00 0.00 2.83
1894 8358 1.610624 GCACTTGAGACCGATCCCAAA 60.611 52.381 0.00 0.00 0.00 3.28
1910 8374 4.158786 TCCCAAATTCAAAGCCATCAAGA 58.841 39.130 0.00 0.00 0.00 3.02
1978 8445 4.214986 TGGGCAAGATTTCGTTGATCTA 57.785 40.909 0.00 0.00 33.63 1.98
1988 8455 7.386851 AGATTTCGTTGATCTAGTCTTTGGAA 58.613 34.615 0.00 0.00 32.27 3.53
1995 8462 6.227298 TGATCTAGTCTTTGGAATCCTCAC 57.773 41.667 0.00 0.00 0.00 3.51
2014 8481 1.202927 ACCACTCCACTTGGAACCATG 60.203 52.381 0.00 5.39 44.91 3.66
2017 8484 1.271597 ACTCCACTTGGAACCATGCTC 60.272 52.381 0.00 0.00 44.91 4.26
2028 8495 3.057946 GGAACCATGCTCAAGACTTTCAC 60.058 47.826 0.00 0.00 0.00 3.18
2110 8577 3.944087 ACAGGAATGTCAAGGCTTACTC 58.056 45.455 0.00 0.00 0.00 2.59
2122 8589 1.285078 GGCTTACTCCTGTCCCCAAAT 59.715 52.381 0.00 0.00 0.00 2.32
2131 8598 1.526225 GTCCCCAAATCTAGCGCCC 60.526 63.158 2.29 0.00 0.00 6.13
2146 8613 4.929807 CCCTTCTTTGGGTGCAGT 57.070 55.556 0.00 0.00 42.25 4.40
2175 8642 5.551233 TGTGCTGCAAGTAGAAGAATTAGT 58.449 37.500 2.77 0.00 35.30 2.24
2185 8652 5.972382 AGTAGAAGAATTAGTTCGTCGATGC 59.028 40.000 7.95 0.00 44.36 3.91
2189 8656 4.504858 AGAATTAGTTCGTCGATGCCTTT 58.495 39.130 0.00 0.00 39.38 3.11
2190 8657 4.330074 AGAATTAGTTCGTCGATGCCTTTG 59.670 41.667 0.00 0.00 39.38 2.77
2216 8683 2.615912 GGATCCACTTGCTGTATTGAGC 59.384 50.000 6.95 0.00 39.62 4.26
2218 8685 4.443457 GGATCCACTTGCTGTATTGAGCTA 60.443 45.833 6.95 0.00 39.90 3.32
2221 8688 4.695455 TCCACTTGCTGTATTGAGCTAAAC 59.305 41.667 0.00 0.00 39.90 2.01
2231 8698 3.534357 TTGAGCTAAACCCCAAATCCA 57.466 42.857 0.00 0.00 0.00 3.41
2232 8699 2.802719 TGAGCTAAACCCCAAATCCAC 58.197 47.619 0.00 0.00 0.00 4.02
2235 8711 4.200092 GAGCTAAACCCCAAATCCACTAG 58.800 47.826 0.00 0.00 0.00 2.57
2294 8770 2.675423 TGACCGACGACCTCCAGG 60.675 66.667 0.00 0.00 42.17 4.45
2295 8771 3.450115 GACCGACGACCTCCAGGG 61.450 72.222 0.00 0.00 40.27 4.45
2296 8772 3.933048 GACCGACGACCTCCAGGGA 62.933 68.421 0.00 0.00 40.27 4.20
2297 8773 2.442272 CCGACGACCTCCAGGGAT 60.442 66.667 0.00 0.00 40.27 3.85
2418 8901 3.492421 ACTTGCCAATAAACAGCATCG 57.508 42.857 0.00 0.00 0.00 3.84
2439 8922 3.060070 CGTCAGAACTTACCACCGTTTTC 60.060 47.826 0.00 0.00 0.00 2.29
2458 8941 7.651704 CCGTTTTCTATGTTCTCATTGGTTTTT 59.348 33.333 0.00 0.00 35.70 1.94
2459 8942 8.690840 CGTTTTCTATGTTCTCATTGGTTTTTC 58.309 33.333 0.00 0.00 35.70 2.29
2464 8947 9.965824 TCTATGTTCTCATTGGTTTTTCTTTTC 57.034 29.630 0.00 0.00 35.70 2.29
2465 8948 9.971922 CTATGTTCTCATTGGTTTTTCTTTTCT 57.028 29.630 0.00 0.00 35.70 2.52
2474 8957 9.368921 CATTGGTTTTTCTTTTCTTATTTTCGC 57.631 29.630 0.00 0.00 0.00 4.70
2483 8966 8.836268 TCTTTTCTTATTTTCGCTACAGGTTA 57.164 30.769 0.00 0.00 0.00 2.85
2544 9027 2.483745 CAGCGTGCTCATGCCTTG 59.516 61.111 10.18 0.40 44.12 3.61
2545 9028 2.033141 AGCGTGCTCATGCCTTGT 59.967 55.556 10.18 0.00 44.12 3.16
2576 9059 3.065306 CGTTACCTCAGGTGGCCA 58.935 61.111 6.61 0.00 36.19 5.36
2602 9085 0.392998 GGCATCCACTGGTCGATGTT 60.393 55.000 9.35 0.00 38.50 2.71
2626 9109 2.227388 GCCCGGAGATGCAGAAATATTG 59.773 50.000 0.73 0.00 0.00 1.90
2644 9366 9.995957 GAAATATTGCTAGAAGTTTCCTTTCTC 57.004 33.333 0.00 0.00 36.38 2.87
2655 9377 7.715686 AGAAGTTTCCTTTCTCGATGTTTTACT 59.284 33.333 0.00 0.00 29.05 2.24
2703 9426 1.659622 TTGCTGCCATCCATTGAGCG 61.660 55.000 0.00 0.00 29.81 5.03
2720 9443 1.445410 CGTCATGTCGGAGGCGAAA 60.445 57.895 4.33 0.00 28.88 3.46
2962 9708 8.345565 TCTCTTCTGTTCAGCTTTGAAATTTAC 58.654 33.333 0.00 0.00 0.00 2.01
2963 9709 8.225603 TCTTCTGTTCAGCTTTGAAATTTACT 57.774 30.769 0.00 0.00 0.00 2.24
2964 9710 9.337396 TCTTCTGTTCAGCTTTGAAATTTACTA 57.663 29.630 0.00 0.00 0.00 1.82
2965 9711 9.604626 CTTCTGTTCAGCTTTGAAATTTACTAG 57.395 33.333 0.00 0.00 0.00 2.57
2966 9712 8.677148 TCTGTTCAGCTTTGAAATTTACTAGT 57.323 30.769 0.00 0.00 0.00 2.57
2967 9713 9.772973 TCTGTTCAGCTTTGAAATTTACTAGTA 57.227 29.630 0.00 0.00 0.00 1.82
2968 9714 9.813080 CTGTTCAGCTTTGAAATTTACTAGTAC 57.187 33.333 0.91 0.00 0.00 2.73
2969 9715 9.332502 TGTTCAGCTTTGAAATTTACTAGTACA 57.667 29.630 0.91 0.00 0.00 2.90
2973 9719 9.065871 CAGCTTTGAAATTTACTAGTACATTGC 57.934 33.333 13.66 12.53 0.00 3.56
2974 9720 8.792633 AGCTTTGAAATTTACTAGTACATTGCA 58.207 29.630 15.66 15.66 0.00 4.08
2975 9721 8.850452 GCTTTGAAATTTACTAGTACATTGCAC 58.150 33.333 18.31 11.84 0.00 4.57
2976 9722 8.942669 TTTGAAATTTACTAGTACATTGCACG 57.057 30.769 18.31 0.00 0.00 5.34
2977 9723 7.661127 TGAAATTTACTAGTACATTGCACGT 57.339 32.000 15.66 1.58 0.00 4.49
2978 9724 7.514805 TGAAATTTACTAGTACATTGCACGTG 58.485 34.615 15.66 12.28 0.00 4.49
2979 9725 4.914312 TTTACTAGTACATTGCACGTGC 57.086 40.909 33.11 33.11 42.50 5.34
2980 9726 2.743636 ACTAGTACATTGCACGTGCT 57.256 45.000 37.59 22.18 42.66 4.40
2981 9727 3.040147 ACTAGTACATTGCACGTGCTT 57.960 42.857 37.59 23.93 42.66 3.91
2982 9728 3.399330 ACTAGTACATTGCACGTGCTTT 58.601 40.909 37.59 23.57 42.66 3.51
2983 9729 2.686558 AGTACATTGCACGTGCTTTG 57.313 45.000 37.59 32.84 42.66 2.77
2984 9730 1.052287 GTACATTGCACGTGCTTTGC 58.948 50.000 37.59 19.75 42.66 3.68
2999 9745 5.524511 TGCTTTGCACGTACAGTAATAAG 57.475 39.130 0.00 0.00 31.71 1.73
3000 9746 4.992319 TGCTTTGCACGTACAGTAATAAGT 59.008 37.500 0.00 0.00 31.71 2.24
3001 9747 5.467399 TGCTTTGCACGTACAGTAATAAGTT 59.533 36.000 0.00 0.00 31.71 2.66
3002 9748 6.645827 TGCTTTGCACGTACAGTAATAAGTTA 59.354 34.615 0.00 0.00 31.71 2.24
3003 9749 7.171167 TGCTTTGCACGTACAGTAATAAGTTAA 59.829 33.333 0.00 0.00 31.71 2.01
3004 9750 7.476492 GCTTTGCACGTACAGTAATAAGTTAAC 59.524 37.037 0.00 0.00 0.00 2.01
3005 9751 6.949578 TGCACGTACAGTAATAAGTTAACC 57.050 37.500 0.88 0.00 0.00 2.85
3006 9752 6.453943 TGCACGTACAGTAATAAGTTAACCA 58.546 36.000 0.88 0.00 0.00 3.67
3007 9753 6.927936 TGCACGTACAGTAATAAGTTAACCAA 59.072 34.615 0.88 0.00 0.00 3.67
3008 9754 7.116662 TGCACGTACAGTAATAAGTTAACCAAG 59.883 37.037 0.88 0.00 0.00 3.61
3009 9755 7.450627 CACGTACAGTAATAAGTTAACCAAGC 58.549 38.462 0.88 0.00 0.00 4.01
3010 9756 7.116662 CACGTACAGTAATAAGTTAACCAAGCA 59.883 37.037 0.88 0.00 0.00 3.91
3011 9757 7.330208 ACGTACAGTAATAAGTTAACCAAGCAG 59.670 37.037 0.88 0.00 0.00 4.24
3012 9758 7.543172 CGTACAGTAATAAGTTAACCAAGCAGA 59.457 37.037 0.88 0.00 0.00 4.26
3013 9759 9.211485 GTACAGTAATAAGTTAACCAAGCAGAA 57.789 33.333 0.88 0.00 0.00 3.02
3014 9760 8.095937 ACAGTAATAAGTTAACCAAGCAGAAC 57.904 34.615 0.88 0.00 0.00 3.01
3015 9761 7.717875 ACAGTAATAAGTTAACCAAGCAGAACA 59.282 33.333 0.88 0.00 0.00 3.18
3016 9762 8.730680 CAGTAATAAGTTAACCAAGCAGAACAT 58.269 33.333 0.88 0.00 0.00 2.71
3017 9763 9.297037 AGTAATAAGTTAACCAAGCAGAACATT 57.703 29.630 0.88 0.00 0.00 2.71
3022 9768 7.625828 AGTTAACCAAGCAGAACATTATACC 57.374 36.000 0.88 0.00 0.00 2.73
3023 9769 7.172342 AGTTAACCAAGCAGAACATTATACCA 58.828 34.615 0.88 0.00 0.00 3.25
3024 9770 7.834181 AGTTAACCAAGCAGAACATTATACCAT 59.166 33.333 0.88 0.00 0.00 3.55
3025 9771 9.116067 GTTAACCAAGCAGAACATTATACCATA 57.884 33.333 0.00 0.00 0.00 2.74
3026 9772 7.807977 AACCAAGCAGAACATTATACCATAG 57.192 36.000 0.00 0.00 0.00 2.23
3027 9773 7.136822 ACCAAGCAGAACATTATACCATAGA 57.863 36.000 0.00 0.00 0.00 1.98
3028 9774 6.992715 ACCAAGCAGAACATTATACCATAGAC 59.007 38.462 0.00 0.00 0.00 2.59
3029 9775 6.992123 CCAAGCAGAACATTATACCATAGACA 59.008 38.462 0.00 0.00 0.00 3.41
3030 9776 7.663081 CCAAGCAGAACATTATACCATAGACAT 59.337 37.037 0.00 0.00 0.00 3.06
3031 9777 9.710900 CAAGCAGAACATTATACCATAGACATA 57.289 33.333 0.00 0.00 0.00 2.29
3032 9778 9.935241 AAGCAGAACATTATACCATAGACATAG 57.065 33.333 0.00 0.00 0.00 2.23
3033 9779 9.094578 AGCAGAACATTATACCATAGACATAGT 57.905 33.333 0.00 0.00 0.00 2.12
3034 9780 9.712305 GCAGAACATTATACCATAGACATAGTT 57.288 33.333 0.00 0.00 0.00 2.24
3040 9786 9.587772 CATTATACCATAGACATAGTTAGTGCC 57.412 37.037 0.00 0.00 0.00 5.01
3041 9787 8.715190 TTATACCATAGACATAGTTAGTGCCA 57.285 34.615 0.00 0.00 0.00 4.92
3042 9788 7.798710 ATACCATAGACATAGTTAGTGCCAT 57.201 36.000 0.00 0.00 0.00 4.40
3043 9789 5.858381 ACCATAGACATAGTTAGTGCCATG 58.142 41.667 0.00 0.00 0.00 3.66
3044 9790 5.602561 ACCATAGACATAGTTAGTGCCATGA 59.397 40.000 0.00 0.00 0.00 3.07
3045 9791 6.162079 CCATAGACATAGTTAGTGCCATGAG 58.838 44.000 0.00 0.00 0.00 2.90
3046 9792 6.015095 CCATAGACATAGTTAGTGCCATGAGA 60.015 42.308 0.00 0.00 0.00 3.27
3047 9793 7.310299 CCATAGACATAGTTAGTGCCATGAGAT 60.310 40.741 0.00 0.00 0.00 2.75
3048 9794 6.491714 AGACATAGTTAGTGCCATGAGATT 57.508 37.500 0.00 0.00 0.00 2.40
3049 9795 6.893583 AGACATAGTTAGTGCCATGAGATTT 58.106 36.000 0.00 0.00 0.00 2.17
3050 9796 8.023021 AGACATAGTTAGTGCCATGAGATTTA 57.977 34.615 0.00 0.00 0.00 1.40
3051 9797 8.147058 AGACATAGTTAGTGCCATGAGATTTAG 58.853 37.037 0.00 0.00 0.00 1.85
3052 9798 7.796054 ACATAGTTAGTGCCATGAGATTTAGT 58.204 34.615 0.00 0.00 0.00 2.24
3053 9799 8.924303 ACATAGTTAGTGCCATGAGATTTAGTA 58.076 33.333 0.00 0.00 0.00 1.82
3054 9800 9.764363 CATAGTTAGTGCCATGAGATTTAGTAA 57.236 33.333 0.00 0.00 0.00 2.24
3056 9802 8.494016 AGTTAGTGCCATGAGATTTAGTAAAC 57.506 34.615 0.00 0.00 0.00 2.01
3057 9803 8.100791 AGTTAGTGCCATGAGATTTAGTAAACA 58.899 33.333 0.00 0.00 0.00 2.83
3058 9804 8.893727 GTTAGTGCCATGAGATTTAGTAAACAT 58.106 33.333 0.00 0.00 0.00 2.71
3060 9806 8.668510 AGTGCCATGAGATTTAGTAAACATAG 57.331 34.615 0.00 0.00 0.00 2.23
3061 9807 8.267894 AGTGCCATGAGATTTAGTAAACATAGT 58.732 33.333 0.00 0.00 0.00 2.12
3062 9808 8.893727 GTGCCATGAGATTTAGTAAACATAGTT 58.106 33.333 0.00 0.00 0.00 2.24
3063 9809 8.892723 TGCCATGAGATTTAGTAAACATAGTTG 58.107 33.333 0.00 0.00 0.00 3.16
3064 9810 8.893727 GCCATGAGATTTAGTAAACATAGTTGT 58.106 33.333 0.00 0.00 37.82 3.32
3088 9834 9.727859 TGTCTTGTAATAAAGTAATTAGTGCCA 57.272 29.630 0.00 0.00 0.00 4.92
3099 9845 9.860898 AAAGTAATTAGTGCCATGAGATTTTTC 57.139 29.630 0.00 0.00 0.00 2.29
3100 9846 8.000780 AGTAATTAGTGCCATGAGATTTTTCC 57.999 34.615 0.00 0.00 0.00 3.13
3101 9847 5.859205 ATTAGTGCCATGAGATTTTTCCC 57.141 39.130 0.00 0.00 0.00 3.97
3102 9848 2.094675 AGTGCCATGAGATTTTTCCCG 58.905 47.619 0.00 0.00 0.00 5.14
3103 9849 1.818674 GTGCCATGAGATTTTTCCCGT 59.181 47.619 0.00 0.00 0.00 5.28
3104 9850 2.091541 TGCCATGAGATTTTTCCCGTC 58.908 47.619 0.00 0.00 0.00 4.79
3105 9851 2.091541 GCCATGAGATTTTTCCCGTCA 58.908 47.619 0.00 0.00 0.00 4.35
3106 9852 2.689983 GCCATGAGATTTTTCCCGTCAT 59.310 45.455 0.00 0.00 0.00 3.06
3107 9853 3.489738 GCCATGAGATTTTTCCCGTCATG 60.490 47.826 0.00 4.04 42.72 3.07
3108 9854 3.947196 CCATGAGATTTTTCCCGTCATGA 59.053 43.478 11.31 0.00 44.84 3.07
3109 9855 4.581824 CCATGAGATTTTTCCCGTCATGAT 59.418 41.667 11.31 0.00 44.84 2.45
3110 9856 5.068198 CCATGAGATTTTTCCCGTCATGATT 59.932 40.000 11.31 0.00 44.84 2.57
3111 9857 5.818136 TGAGATTTTTCCCGTCATGATTC 57.182 39.130 0.00 0.00 0.00 2.52
3112 9858 5.500234 TGAGATTTTTCCCGTCATGATTCT 58.500 37.500 0.00 0.00 0.00 2.40
3113 9859 5.945784 TGAGATTTTTCCCGTCATGATTCTT 59.054 36.000 0.00 0.00 0.00 2.52
3114 9860 7.109501 TGAGATTTTTCCCGTCATGATTCTTA 58.890 34.615 0.00 0.00 0.00 2.10
3115 9861 7.065803 TGAGATTTTTCCCGTCATGATTCTTAC 59.934 37.037 0.00 0.00 0.00 2.34
3116 9862 6.884295 AGATTTTTCCCGTCATGATTCTTACA 59.116 34.615 0.00 0.00 0.00 2.41
3117 9863 7.557719 AGATTTTTCCCGTCATGATTCTTACAT 59.442 33.333 0.00 0.00 0.00 2.29
3118 9864 6.435430 TTTTCCCGTCATGATTCTTACATG 57.565 37.500 0.00 0.00 44.20 3.21
3119 9865 4.753516 TCCCGTCATGATTCTTACATGT 57.246 40.909 2.69 2.69 43.56 3.21
3120 9866 4.693283 TCCCGTCATGATTCTTACATGTC 58.307 43.478 0.00 0.00 43.56 3.06
3121 9867 4.161377 TCCCGTCATGATTCTTACATGTCA 59.839 41.667 0.00 0.00 43.56 3.58
3122 9868 4.875536 CCCGTCATGATTCTTACATGTCAA 59.124 41.667 0.00 0.00 43.56 3.18
3123 9869 5.528690 CCCGTCATGATTCTTACATGTCAAT 59.471 40.000 0.00 0.00 43.56 2.57
3124 9870 6.293081 CCCGTCATGATTCTTACATGTCAATC 60.293 42.308 0.00 9.62 43.56 2.67
3125 9871 6.258507 CCGTCATGATTCTTACATGTCAATCA 59.741 38.462 21.25 21.25 43.56 2.57
3126 9872 7.201635 CCGTCATGATTCTTACATGTCAATCAA 60.202 37.037 22.17 11.08 43.56 2.57
3127 9873 8.177013 CGTCATGATTCTTACATGTCAATCAAA 58.823 33.333 22.17 14.87 43.56 2.69
3128 9874 9.844790 GTCATGATTCTTACATGTCAATCAAAA 57.155 29.630 22.17 14.64 43.56 2.44
3146 9892 2.941891 AAAACACGTATGTCACTGCG 57.058 45.000 0.00 0.00 38.45 5.18
3147 9893 2.143008 AAACACGTATGTCACTGCGA 57.857 45.000 0.00 0.00 38.45 5.10
3148 9894 1.415374 AACACGTATGTCACTGCGAC 58.585 50.000 0.00 0.00 45.61 5.19
3155 9901 3.479370 GTCACTGCGACAGATGCC 58.521 61.111 12.77 0.00 44.69 4.40
3156 9902 1.374631 GTCACTGCGACAGATGCCA 60.375 57.895 12.77 0.00 44.69 4.92
3157 9903 1.374631 TCACTGCGACAGATGCCAC 60.375 57.895 12.77 0.00 35.18 5.01
3158 9904 1.668793 CACTGCGACAGATGCCACA 60.669 57.895 12.77 0.00 35.18 4.17
3159 9905 1.022982 CACTGCGACAGATGCCACAT 61.023 55.000 12.77 0.00 35.18 3.21
3160 9906 0.321919 ACTGCGACAGATGCCACATT 60.322 50.000 12.77 0.00 35.18 2.71
3161 9907 0.806868 CTGCGACAGATGCCACATTT 59.193 50.000 1.18 0.00 32.44 2.32
3162 9908 1.200716 CTGCGACAGATGCCACATTTT 59.799 47.619 1.18 0.00 32.44 1.82
3163 9909 1.612950 TGCGACAGATGCCACATTTTT 59.387 42.857 0.00 0.00 0.00 1.94
3187 9933 9.832445 TTTTCTCTCTGAAAAGTATTACACACT 57.168 29.630 0.00 0.00 46.20 3.55
3188 9934 9.477484 TTTCTCTCTGAAAAGTATTACACACTC 57.523 33.333 0.00 0.00 41.23 3.51
3189 9935 8.410673 TCTCTCTGAAAAGTATTACACACTCT 57.589 34.615 0.00 0.00 0.00 3.24
3190 9936 9.516546 TCTCTCTGAAAAGTATTACACACTCTA 57.483 33.333 0.00 0.00 0.00 2.43
3191 9937 9.781834 CTCTCTGAAAAGTATTACACACTCTAG 57.218 37.037 0.00 0.00 0.00 2.43
3192 9938 8.244802 TCTCTGAAAAGTATTACACACTCTAGC 58.755 37.037 0.00 0.00 0.00 3.42
3193 9939 8.123639 TCTGAAAAGTATTACACACTCTAGCT 57.876 34.615 0.00 0.00 0.00 3.32
3194 9940 8.585881 TCTGAAAAGTATTACACACTCTAGCTT 58.414 33.333 0.00 0.00 0.00 3.74
3195 9941 9.209175 CTGAAAAGTATTACACACTCTAGCTTT 57.791 33.333 0.00 0.00 0.00 3.51
3204 9950 9.935241 ATTACACACTCTAGCTTTATATCATGG 57.065 33.333 0.00 0.00 0.00 3.66
3205 9951 7.366847 ACACACTCTAGCTTTATATCATGGT 57.633 36.000 0.00 0.00 0.00 3.55
3206 9952 8.478775 ACACACTCTAGCTTTATATCATGGTA 57.521 34.615 0.00 0.00 0.00 3.25
3207 9953 8.924303 ACACACTCTAGCTTTATATCATGGTAA 58.076 33.333 0.00 0.00 0.00 2.85
3208 9954 9.764363 CACACTCTAGCTTTATATCATGGTAAA 57.236 33.333 0.00 0.00 0.00 2.01
3223 9969 8.876275 ATCATGGTAAATAAACATCAATGCAC 57.124 30.769 0.00 0.00 0.00 4.57
3224 9970 8.065473 TCATGGTAAATAAACATCAATGCACT 57.935 30.769 0.00 0.00 0.00 4.40
3225 9971 9.183368 TCATGGTAAATAAACATCAATGCACTA 57.817 29.630 0.00 0.00 0.00 2.74
3226 9972 9.970395 CATGGTAAATAAACATCAATGCACTAT 57.030 29.630 0.00 0.00 0.00 2.12
3233 9979 9.793252 AATAAACATCAATGCACTATTCTGAAC 57.207 29.630 0.00 0.00 0.00 3.18
3234 9980 5.824904 ACATCAATGCACTATTCTGAACC 57.175 39.130 0.00 0.00 0.00 3.62
3235 9981 5.503927 ACATCAATGCACTATTCTGAACCT 58.496 37.500 0.00 0.00 0.00 3.50
3236 9982 5.948162 ACATCAATGCACTATTCTGAACCTT 59.052 36.000 0.00 0.00 0.00 3.50
3237 9983 6.094603 ACATCAATGCACTATTCTGAACCTTC 59.905 38.462 0.00 0.00 0.00 3.46
3238 9984 5.809001 TCAATGCACTATTCTGAACCTTCT 58.191 37.500 0.00 0.00 0.00 2.85
3239 9985 6.946340 TCAATGCACTATTCTGAACCTTCTA 58.054 36.000 0.00 0.00 0.00 2.10
3240 9986 7.394016 TCAATGCACTATTCTGAACCTTCTAA 58.606 34.615 0.00 0.00 0.00 2.10
3241 9987 7.334421 TCAATGCACTATTCTGAACCTTCTAAC 59.666 37.037 0.00 0.00 0.00 2.34
3242 9988 5.488341 TGCACTATTCTGAACCTTCTAACC 58.512 41.667 0.00 0.00 0.00 2.85
3243 9989 4.876679 GCACTATTCTGAACCTTCTAACCC 59.123 45.833 0.00 0.00 0.00 4.11
3244 9990 5.570844 GCACTATTCTGAACCTTCTAACCCA 60.571 44.000 0.00 0.00 0.00 4.51
3245 9991 6.653989 CACTATTCTGAACCTTCTAACCCAT 58.346 40.000 0.00 0.00 0.00 4.00
3246 9992 7.635089 GCACTATTCTGAACCTTCTAACCCATA 60.635 40.741 0.00 0.00 0.00 2.74
3247 9993 8.265055 CACTATTCTGAACCTTCTAACCCATAA 58.735 37.037 0.00 0.00 0.00 1.90
3248 9994 8.265764 ACTATTCTGAACCTTCTAACCCATAAC 58.734 37.037 0.00 0.00 0.00 1.89
3249 9995 6.442541 TTCTGAACCTTCTAACCCATAACA 57.557 37.500 0.00 0.00 0.00 2.41
3250 9996 6.442541 TCTGAACCTTCTAACCCATAACAA 57.557 37.500 0.00 0.00 0.00 2.83
3251 9997 6.472887 TCTGAACCTTCTAACCCATAACAAG 58.527 40.000 0.00 0.00 0.00 3.16
3252 9998 6.043938 TCTGAACCTTCTAACCCATAACAAGT 59.956 38.462 0.00 0.00 0.00 3.16
3253 9999 6.607019 TGAACCTTCTAACCCATAACAAGTT 58.393 36.000 0.00 0.00 0.00 2.66
3254 10000 7.064229 TGAACCTTCTAACCCATAACAAGTTT 58.936 34.615 0.00 0.00 0.00 2.66
3255 10001 7.562088 TGAACCTTCTAACCCATAACAAGTTTT 59.438 33.333 0.00 0.00 0.00 2.43
3256 10002 7.520451 ACCTTCTAACCCATAACAAGTTTTC 57.480 36.000 0.00 0.00 0.00 2.29
3257 10003 7.295340 ACCTTCTAACCCATAACAAGTTTTCT 58.705 34.615 0.00 0.00 0.00 2.52
3258 10004 8.442374 ACCTTCTAACCCATAACAAGTTTTCTA 58.558 33.333 0.00 0.00 0.00 2.10
3259 10005 9.292195 CCTTCTAACCCATAACAAGTTTTCTAA 57.708 33.333 0.00 0.00 0.00 2.10
3261 10007 8.331730 TCTAACCCATAACAAGTTTTCTAAGC 57.668 34.615 0.00 0.00 0.00 3.09
3262 10008 6.969993 AACCCATAACAAGTTTTCTAAGCA 57.030 33.333 0.00 0.00 0.00 3.91
3263 10009 6.575162 ACCCATAACAAGTTTTCTAAGCAG 57.425 37.500 0.00 0.00 0.00 4.24
3264 10010 6.303839 ACCCATAACAAGTTTTCTAAGCAGA 58.696 36.000 0.00 0.00 0.00 4.26
3265 10011 6.206829 ACCCATAACAAGTTTTCTAAGCAGAC 59.793 38.462 0.00 0.00 0.00 3.51
3266 10012 6.431234 CCCATAACAAGTTTTCTAAGCAGACT 59.569 38.462 0.00 0.00 0.00 3.24
3267 10013 7.361286 CCCATAACAAGTTTTCTAAGCAGACTC 60.361 40.741 0.00 0.00 0.00 3.36
3268 10014 5.659048 AACAAGTTTTCTAAGCAGACTCG 57.341 39.130 0.00 0.00 0.00 4.18
3269 10015 4.694339 ACAAGTTTTCTAAGCAGACTCGT 58.306 39.130 0.00 0.00 0.00 4.18
3270 10016 4.508124 ACAAGTTTTCTAAGCAGACTCGTG 59.492 41.667 0.00 0.00 0.00 4.35
3271 10017 4.323553 AGTTTTCTAAGCAGACTCGTGT 57.676 40.909 0.00 0.00 0.00 4.49
3272 10018 4.694339 AGTTTTCTAAGCAGACTCGTGTT 58.306 39.130 0.00 0.00 0.00 3.32
3273 10019 5.839621 AGTTTTCTAAGCAGACTCGTGTTA 58.160 37.500 0.00 0.00 0.00 2.41
3274 10020 5.690857 AGTTTTCTAAGCAGACTCGTGTTAC 59.309 40.000 0.00 0.00 0.00 2.50
3275 10021 3.466712 TCTAAGCAGACTCGTGTTACG 57.533 47.619 0.00 0.00 44.19 3.18
3276 10022 2.161012 TCTAAGCAGACTCGTGTTACGG 59.839 50.000 1.24 0.00 42.81 4.02
3277 10023 0.672342 AAGCAGACTCGTGTTACGGT 59.328 50.000 1.24 0.00 42.81 4.83
3278 10024 1.527034 AGCAGACTCGTGTTACGGTA 58.473 50.000 1.24 0.00 42.81 4.02
3279 10025 1.467734 AGCAGACTCGTGTTACGGTAG 59.532 52.381 1.24 0.00 42.81 3.18
3280 10026 1.892468 CAGACTCGTGTTACGGTAGC 58.108 55.000 1.24 0.00 42.81 3.58
3281 10027 1.198408 CAGACTCGTGTTACGGTAGCA 59.802 52.381 0.17 0.17 42.81 3.49
3282 10028 1.198637 AGACTCGTGTTACGGTAGCAC 59.801 52.381 20.94 20.94 42.81 4.40
3283 10029 0.953727 ACTCGTGTTACGGTAGCACA 59.046 50.000 27.16 16.64 42.81 4.57
3284 10030 1.337703 ACTCGTGTTACGGTAGCACAA 59.662 47.619 27.16 14.03 42.81 3.33
3285 10031 2.223782 ACTCGTGTTACGGTAGCACAAA 60.224 45.455 27.16 16.96 42.81 2.83
3286 10032 2.991190 CTCGTGTTACGGTAGCACAAAT 59.009 45.455 27.16 0.00 42.81 2.32
3287 10033 4.168014 CTCGTGTTACGGTAGCACAAATA 58.832 43.478 27.16 13.15 42.81 1.40
3288 10034 4.168014 TCGTGTTACGGTAGCACAAATAG 58.832 43.478 27.16 14.95 42.81 1.73
3289 10035 4.082841 TCGTGTTACGGTAGCACAAATAGA 60.083 41.667 27.16 16.56 42.81 1.98
3290 10036 4.264614 CGTGTTACGGTAGCACAAATAGAG 59.735 45.833 27.16 11.12 39.50 2.43
3291 10037 5.404946 GTGTTACGGTAGCACAAATAGAGA 58.595 41.667 24.44 0.00 39.36 3.10
3292 10038 5.515626 GTGTTACGGTAGCACAAATAGAGAG 59.484 44.000 24.44 0.00 39.36 3.20
3293 10039 5.416639 TGTTACGGTAGCACAAATAGAGAGA 59.583 40.000 0.17 0.00 0.00 3.10
3294 10040 6.096423 TGTTACGGTAGCACAAATAGAGAGAT 59.904 38.462 0.17 0.00 0.00 2.75
3295 10041 4.938080 ACGGTAGCACAAATAGAGAGATG 58.062 43.478 0.00 0.00 0.00 2.90
3296 10042 3.738282 CGGTAGCACAAATAGAGAGATGC 59.262 47.826 0.00 0.00 0.00 3.91
3297 10043 4.500545 CGGTAGCACAAATAGAGAGATGCT 60.501 45.833 1.78 1.78 45.05 3.79
3298 10044 5.278512 CGGTAGCACAAATAGAGAGATGCTA 60.279 44.000 0.00 0.00 43.00 3.49
3299 10045 6.571344 CGGTAGCACAAATAGAGAGATGCTAT 60.571 42.308 6.99 0.00 44.80 2.97
3300 10046 6.589523 GGTAGCACAAATAGAGAGATGCTATG 59.410 42.308 6.99 0.00 44.80 2.23
3301 10047 6.416631 AGCACAAATAGAGAGATGCTATGA 57.583 37.500 0.00 0.00 41.45 2.15
3302 10048 6.824553 AGCACAAATAGAGAGATGCTATGAA 58.175 36.000 0.00 0.00 41.45 2.57
3303 10049 7.278135 AGCACAAATAGAGAGATGCTATGAAA 58.722 34.615 0.00 0.00 41.45 2.69
3304 10050 7.772292 AGCACAAATAGAGAGATGCTATGAAAA 59.228 33.333 0.00 0.00 41.45 2.29
3305 10051 8.400947 GCACAAATAGAGAGATGCTATGAAAAA 58.599 33.333 0.00 0.00 0.00 1.94
3306 10052 9.713740 CACAAATAGAGAGATGCTATGAAAAAC 57.286 33.333 0.00 0.00 0.00 2.43
3307 10053 8.897752 ACAAATAGAGAGATGCTATGAAAAACC 58.102 33.333 0.00 0.00 0.00 3.27
3308 10054 9.118300 CAAATAGAGAGATGCTATGAAAAACCT 57.882 33.333 0.00 0.00 0.00 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.036604 GGAGGAAGGAGCTCTTTATCCG 59.963 54.545 20.09 0.00 40.73 4.18
163 204 0.394899 GGCTGGCAATAGAGCAAGGT 60.395 55.000 0.00 0.00 36.04 3.50
201 242 1.207488 ACATGACCTTAGCCTGGCCA 61.207 55.000 16.57 4.71 0.00 5.36
211 252 1.003355 CGTGGCCTCACATGACCTT 60.003 57.895 3.32 0.00 43.79 3.50
220 261 2.571757 GACATCGTCGTGGCCTCA 59.428 61.111 3.32 0.00 0.00 3.86
267 308 3.330853 CGCTAGACGCCGCAATCC 61.331 66.667 0.00 0.00 34.21 3.01
313 354 0.538118 AATACGCCCTAAACTCGCCA 59.462 50.000 0.00 0.00 0.00 5.69
314 355 1.202498 AGAATACGCCCTAAACTCGCC 60.202 52.381 0.00 0.00 0.00 5.54
315 356 1.859080 CAGAATACGCCCTAAACTCGC 59.141 52.381 0.00 0.00 0.00 5.03
329 370 2.750948 GCCGCGGAGTTTATCAGAATA 58.249 47.619 33.48 0.00 0.00 1.75
365 406 1.401552 CGTATACCGGTCAAACCTCGA 59.598 52.381 12.40 0.00 35.66 4.04
416 457 3.007635 CACACCCGAAACCCTTATCTTC 58.992 50.000 0.00 0.00 0.00 2.87
465 507 1.491754 ACCGTAAAAGTGGTCCAACCT 59.508 47.619 0.00 0.00 39.58 3.50
530 572 7.277539 CGTATAAGTGGTCAAACCCGTAAAATA 59.722 37.037 0.00 0.00 37.50 1.40
594 638 2.621668 CCAAAGAATCCCCTGACCTTCC 60.622 54.545 0.00 0.00 0.00 3.46
620 664 6.831727 TCTATCTTCGTTTGTTTTTCACGA 57.168 33.333 0.00 0.00 0.00 4.35
655 699 2.255406 AGGAGTGATGAGTGAACTGCT 58.745 47.619 0.00 0.00 37.73 4.24
767 943 4.649674 AGCCTCCGTGAGTTATTTCTCATA 59.350 41.667 0.00 0.00 44.59 2.15
783 959 1.363744 GTGAAGATGTTGAGCCTCCG 58.636 55.000 0.00 0.00 0.00 4.63
805 981 3.306166 CGTGTAGAGCTTTACATTTCCCG 59.694 47.826 19.01 13.54 36.08 5.14
840 1019 0.109132 CAAAATGCTCCACGGGAAGC 60.109 55.000 0.00 0.00 0.00 3.86
875 1058 2.290323 GCCATAGCCCAGTATTGGTAGG 60.290 54.545 3.28 0.00 43.40 3.18
919 1438 2.544267 GGAAGACGAGTTGAGGTGTTTG 59.456 50.000 0.00 0.00 0.00 2.93
920 1439 2.434702 AGGAAGACGAGTTGAGGTGTTT 59.565 45.455 0.00 0.00 0.00 2.83
930 1449 0.827925 TGGTGAGCAGGAAGACGAGT 60.828 55.000 0.00 0.00 0.00 4.18
943 1462 2.366916 ACTTCTGAGGAACTGTGGTGAG 59.633 50.000 0.00 0.00 41.55 3.51
978 1497 0.706433 TCGTAGGGGACTAGGGTTGT 59.294 55.000 0.00 0.00 45.49 3.32
1073 1592 0.820871 TTCCGCAAACAGCACCTTTT 59.179 45.000 0.00 0.00 46.13 2.27
1143 7541 2.994995 AGACGGACGATGGTGCCA 60.995 61.111 0.00 0.00 0.00 4.92
1239 7637 4.043200 GCCTTGCACGCCTTGGTC 62.043 66.667 0.00 0.00 0.00 4.02
1266 7664 2.363406 GCAGCATTGAGGGGGCTT 60.363 61.111 0.00 0.00 35.27 4.35
1268 7666 3.145551 CTGCAGCATTGAGGGGGC 61.146 66.667 0.00 0.00 0.00 5.80
1292 7690 3.552604 TCACTTTAAGCCGATTGCAAC 57.447 42.857 0.00 0.00 44.83 4.17
1332 7730 6.260936 AGCTAGTATTTTTGCAGCGATACATT 59.739 34.615 14.09 2.42 37.32 2.71
1351 7749 1.026718 GTTGAATGCCCGCAGCTAGT 61.027 55.000 0.00 0.00 44.23 2.57
1356 7754 0.527113 TGAATGTTGAATGCCCGCAG 59.473 50.000 0.00 0.00 0.00 5.18
1362 7760 3.427233 GGACAGAGCTGAATGTTGAATGC 60.427 47.826 4.21 0.00 0.00 3.56
1363 7761 3.128242 GGGACAGAGCTGAATGTTGAATG 59.872 47.826 4.21 0.00 0.00 2.67
1369 7767 1.649321 TCAGGGACAGAGCTGAATGT 58.351 50.000 4.21 0.00 0.00 2.71
1374 7772 1.117994 TAGCATCAGGGACAGAGCTG 58.882 55.000 0.00 0.00 32.81 4.24
1408 7806 2.677836 CCCCGATGTACTCAACAACATG 59.322 50.000 0.00 0.00 42.70 3.21
1437 7835 7.308435 CAACAGGAGGATAACATTTCTTGTTC 58.692 38.462 0.00 0.00 45.55 3.18
1446 7844 2.025981 TGCAGCAACAGGAGGATAACAT 60.026 45.455 0.00 0.00 0.00 2.71
1450 7848 1.208052 GTCTGCAGCAACAGGAGGATA 59.792 52.381 9.47 0.00 38.26 2.59
1497 7898 2.743172 GTTACGATGAACTTCGCAACG 58.257 47.619 9.38 0.00 42.82 4.10
1500 7901 1.068402 TCCGTTACGATGAACTTCGCA 60.068 47.619 6.24 0.00 42.82 5.10
1542 7943 5.182001 CAGGGAAAACATTACTCTTGTGGAG 59.818 44.000 0.00 0.00 46.87 3.86
1554 7955 7.602265 CCGTATTTTTCAATCAGGGAAAACATT 59.398 33.333 0.00 0.00 42.20 2.71
1578 7979 8.952713 TGAATGTTCACTTTTTCCGGTATACCG 61.953 40.741 32.97 32.97 44.84 4.02
1595 7996 2.373169 AGCACCTTCTCCTGAATGTTCA 59.627 45.455 0.00 0.00 30.49 3.18
1645 8046 2.997315 CACAGGCCGGGAGAGTGA 60.997 66.667 8.08 0.00 32.14 3.41
1653 8056 1.176527 AATTCATGTTCACAGGCCGG 58.823 50.000 0.00 0.00 0.00 6.13
1655 8058 3.509575 TGGTAAATTCATGTTCACAGGCC 59.490 43.478 0.00 0.00 0.00 5.19
1759 8223 1.153409 CAGCAGCGCTCTCCTGAAT 60.153 57.895 19.26 0.00 36.40 2.57
1760 8224 2.263852 CAGCAGCGCTCTCCTGAA 59.736 61.111 19.26 0.00 36.40 3.02
1844 8308 3.428045 GCAAACATATTGTCAGGGAGCAC 60.428 47.826 0.00 0.00 0.00 4.40
1864 8328 1.405105 GTCTCAAGTGCCTGTTTTGCA 59.595 47.619 0.00 0.00 36.12 4.08
1894 8358 5.526506 GCCTTATCTTGATGGCTTTGAAT 57.473 39.130 5.14 0.00 41.92 2.57
1910 8374 4.088634 TCCTTTGCATGAACAAGCCTTAT 58.911 39.130 0.00 0.00 0.00 1.73
1978 8445 2.982488 AGTGGTGAGGATTCCAAAGACT 59.018 45.455 5.29 0.00 35.38 3.24
1988 8455 0.987294 CCAAGTGGAGTGGTGAGGAT 59.013 55.000 0.00 0.00 37.39 3.24
1995 8462 1.538047 CATGGTTCCAAGTGGAGTGG 58.462 55.000 0.00 0.00 46.36 4.00
2014 8481 2.156343 ACTCGGTGAAAGTCTTGAGC 57.844 50.000 0.00 0.00 0.00 4.26
2076 8543 4.460263 ACATTCCTGTTTCACACTAGCAA 58.540 39.130 0.00 0.00 28.70 3.91
2080 8547 5.063204 CCTTGACATTCCTGTTTCACACTA 58.937 41.667 0.00 0.00 35.14 2.74
2110 8577 0.815615 GCGCTAGATTTGGGGACAGG 60.816 60.000 0.00 0.00 44.54 4.00
2122 8589 1.602237 CCCAAAGAAGGGCGCTAGA 59.398 57.895 7.64 0.00 43.10 2.43
2131 8598 5.003804 ACATTACTACTGCACCCAAAGAAG 58.996 41.667 0.00 0.00 0.00 2.85
2146 8613 6.280855 TCTTCTACTTGCAGCACATTACTA 57.719 37.500 0.00 0.00 0.00 1.82
2175 8642 1.737236 CAATCCAAAGGCATCGACGAA 59.263 47.619 0.00 0.00 0.00 3.85
2210 8677 3.769300 GTGGATTTGGGGTTTAGCTCAAT 59.231 43.478 0.00 0.00 0.00 2.57
2216 8683 5.174037 TCACTAGTGGATTTGGGGTTTAG 57.826 43.478 22.48 0.00 0.00 1.85
2218 8685 4.675063 ATCACTAGTGGATTTGGGGTTT 57.325 40.909 22.48 0.00 0.00 3.27
2221 8688 4.503991 GCTCTATCACTAGTGGATTTGGGG 60.504 50.000 22.48 8.57 0.00 4.96
2231 8698 7.122715 CCCTTGATATAGGCTCTATCACTAGT 58.877 42.308 18.88 0.00 35.79 2.57
2232 8699 7.068103 CACCCTTGATATAGGCTCTATCACTAG 59.932 44.444 18.88 14.92 35.79 2.57
2235 8711 5.105146 CCACCCTTGATATAGGCTCTATCAC 60.105 48.000 18.88 0.00 35.79 3.06
2294 8770 4.276926 GGGTGTTGATCAAGCAGAATATCC 59.723 45.833 8.80 6.50 0.00 2.59
2295 8771 5.128919 AGGGTGTTGATCAAGCAGAATATC 58.871 41.667 8.80 0.00 0.00 1.63
2296 8772 5.121380 AGGGTGTTGATCAAGCAGAATAT 57.879 39.130 8.80 0.00 0.00 1.28
2297 8773 4.517285 GAGGGTGTTGATCAAGCAGAATA 58.483 43.478 8.80 0.00 0.00 1.75
2418 8901 4.124970 AGAAAACGGTGGTAAGTTCTGAC 58.875 43.478 0.00 0.00 0.00 3.51
2439 8922 9.971922 AGAAAAGAAAAACCAATGAGAACATAG 57.028 29.630 0.00 0.00 35.50 2.23
2458 8941 7.739498 AACCTGTAGCGAAAATAAGAAAAGA 57.261 32.000 0.00 0.00 0.00 2.52
2459 8942 9.490663 CATAACCTGTAGCGAAAATAAGAAAAG 57.509 33.333 0.00 0.00 0.00 2.27
2461 8944 8.780846 TCATAACCTGTAGCGAAAATAAGAAA 57.219 30.769 0.00 0.00 0.00 2.52
2463 8946 7.011109 GCTTCATAACCTGTAGCGAAAATAAGA 59.989 37.037 0.00 0.00 38.32 2.10
2464 8947 7.126398 GCTTCATAACCTGTAGCGAAAATAAG 58.874 38.462 0.00 0.00 38.32 1.73
2465 8948 7.011828 GCTTCATAACCTGTAGCGAAAATAA 57.988 36.000 0.00 0.00 38.32 1.40
2466 8949 6.598753 GCTTCATAACCTGTAGCGAAAATA 57.401 37.500 0.00 0.00 38.32 1.40
2467 8950 5.485662 GCTTCATAACCTGTAGCGAAAAT 57.514 39.130 0.00 0.00 38.32 1.82
2474 8957 3.941483 CCCACAAGCTTCATAACCTGTAG 59.059 47.826 0.00 0.00 0.00 2.74
2544 9027 2.188524 GTAACGCCCGCTACTTCTTAC 58.811 52.381 0.00 0.00 0.00 2.34
2545 9028 1.134946 GGTAACGCCCGCTACTTCTTA 59.865 52.381 1.92 0.00 0.00 2.10
2576 9059 2.277737 CAGTGGATGCCATGGCCT 59.722 61.111 33.44 24.85 41.09 5.19
2581 9064 0.179037 CATCGACCAGTGGATGCCAT 60.179 55.000 18.40 0.00 38.58 4.40
2602 9085 0.908910 TTTCTGCATCTCCGGGCTTA 59.091 50.000 0.00 0.00 0.00 3.09
2644 9366 6.756176 TGCAACAAACAAAAGTAAAACATCG 58.244 32.000 0.00 0.00 0.00 3.84
2655 9377 7.432350 AAGAATCAGTTTGCAACAAACAAAA 57.568 28.000 21.43 9.38 38.64 2.44
2703 9426 1.062587 CATTTTCGCCTCCGACATGAC 59.937 52.381 0.00 0.00 44.30 3.06
2720 9443 3.701542 TCAAGCTCGATGAGTAGGACATT 59.298 43.478 0.00 0.00 31.39 2.71
2962 9708 3.736213 CAAAGCACGTGCAATGTACTAG 58.264 45.455 39.21 15.73 45.16 2.57
2963 9709 2.095969 GCAAAGCACGTGCAATGTACTA 60.096 45.455 39.21 0.00 45.16 1.82
2964 9710 1.334960 GCAAAGCACGTGCAATGTACT 60.335 47.619 39.21 16.76 45.16 2.73
2965 9711 1.052287 GCAAAGCACGTGCAATGTAC 58.948 50.000 39.21 21.21 45.16 2.90
2966 9712 3.470520 GCAAAGCACGTGCAATGTA 57.529 47.368 39.21 0.00 45.16 2.29
2967 9713 4.324424 GCAAAGCACGTGCAATGT 57.676 50.000 39.21 18.73 45.16 2.71
2977 9723 4.992319 ACTTATTACTGTACGTGCAAAGCA 59.008 37.500 7.96 0.00 35.60 3.91
2978 9724 5.526010 ACTTATTACTGTACGTGCAAAGC 57.474 39.130 7.96 0.00 0.00 3.51
2979 9725 7.953710 GGTTAACTTATTACTGTACGTGCAAAG 59.046 37.037 7.96 10.29 0.00 2.77
2980 9726 7.440556 TGGTTAACTTATTACTGTACGTGCAAA 59.559 33.333 7.96 0.03 0.00 3.68
2981 9727 6.927936 TGGTTAACTTATTACTGTACGTGCAA 59.072 34.615 7.96 0.00 0.00 4.08
2982 9728 6.453943 TGGTTAACTTATTACTGTACGTGCA 58.546 36.000 6.10 6.10 0.00 4.57
2983 9729 6.949578 TGGTTAACTTATTACTGTACGTGC 57.050 37.500 5.42 0.00 0.00 5.34
2984 9730 7.116662 TGCTTGGTTAACTTATTACTGTACGTG 59.883 37.037 5.42 0.00 0.00 4.49
2985 9731 7.153985 TGCTTGGTTAACTTATTACTGTACGT 58.846 34.615 5.42 0.00 0.00 3.57
2986 9732 7.543172 TCTGCTTGGTTAACTTATTACTGTACG 59.457 37.037 5.42 0.00 0.00 3.67
2987 9733 8.767478 TCTGCTTGGTTAACTTATTACTGTAC 57.233 34.615 5.42 0.00 0.00 2.90
2988 9734 9.211485 GTTCTGCTTGGTTAACTTATTACTGTA 57.789 33.333 5.42 0.00 0.00 2.74
2989 9735 7.717875 TGTTCTGCTTGGTTAACTTATTACTGT 59.282 33.333 5.42 0.00 0.00 3.55
2990 9736 8.094798 TGTTCTGCTTGGTTAACTTATTACTG 57.905 34.615 5.42 0.00 0.00 2.74
2991 9737 8.863872 ATGTTCTGCTTGGTTAACTTATTACT 57.136 30.769 5.42 0.00 0.00 2.24
2996 9742 9.169592 GGTATAATGTTCTGCTTGGTTAACTTA 57.830 33.333 5.42 0.00 0.00 2.24
2997 9743 7.668052 TGGTATAATGTTCTGCTTGGTTAACTT 59.332 33.333 5.42 0.00 0.00 2.66
2998 9744 7.172342 TGGTATAATGTTCTGCTTGGTTAACT 58.828 34.615 5.42 0.00 0.00 2.24
2999 9745 7.385778 TGGTATAATGTTCTGCTTGGTTAAC 57.614 36.000 0.00 0.00 0.00 2.01
3000 9746 9.337396 CTATGGTATAATGTTCTGCTTGGTTAA 57.663 33.333 0.00 0.00 0.00 2.01
3001 9747 8.710239 TCTATGGTATAATGTTCTGCTTGGTTA 58.290 33.333 0.00 0.00 0.00 2.85
3002 9748 7.499232 GTCTATGGTATAATGTTCTGCTTGGTT 59.501 37.037 0.00 0.00 0.00 3.67
3003 9749 6.992715 GTCTATGGTATAATGTTCTGCTTGGT 59.007 38.462 0.00 0.00 0.00 3.67
3004 9750 6.992123 TGTCTATGGTATAATGTTCTGCTTGG 59.008 38.462 0.00 0.00 0.00 3.61
3005 9751 8.613060 ATGTCTATGGTATAATGTTCTGCTTG 57.387 34.615 0.00 0.00 0.00 4.01
3006 9752 9.935241 CTATGTCTATGGTATAATGTTCTGCTT 57.065 33.333 0.00 0.00 0.00 3.91
3007 9753 9.094578 ACTATGTCTATGGTATAATGTTCTGCT 57.905 33.333 0.00 0.00 0.00 4.24
3008 9754 9.712305 AACTATGTCTATGGTATAATGTTCTGC 57.288 33.333 0.00 0.00 0.00 4.26
3014 9760 9.587772 GGCACTAACTATGTCTATGGTATAATG 57.412 37.037 0.00 0.00 0.00 1.90
3015 9761 9.321532 TGGCACTAACTATGTCTATGGTATAAT 57.678 33.333 0.00 0.00 0.00 1.28
3016 9762 8.715190 TGGCACTAACTATGTCTATGGTATAA 57.285 34.615 0.00 0.00 0.00 0.98
3017 9763 8.749354 CATGGCACTAACTATGTCTATGGTATA 58.251 37.037 0.00 0.00 0.00 1.47
3018 9764 7.454694 TCATGGCACTAACTATGTCTATGGTAT 59.545 37.037 0.00 0.00 0.00 2.73
3019 9765 6.780522 TCATGGCACTAACTATGTCTATGGTA 59.219 38.462 0.00 0.00 0.00 3.25
3020 9766 5.602561 TCATGGCACTAACTATGTCTATGGT 59.397 40.000 0.00 0.00 0.00 3.55
3021 9767 6.015095 TCTCATGGCACTAACTATGTCTATGG 60.015 42.308 0.00 0.00 0.00 2.74
3022 9768 6.986250 TCTCATGGCACTAACTATGTCTATG 58.014 40.000 0.00 0.00 0.00 2.23
3023 9769 7.789202 ATCTCATGGCACTAACTATGTCTAT 57.211 36.000 0.00 0.00 0.00 1.98
3024 9770 7.603180 AATCTCATGGCACTAACTATGTCTA 57.397 36.000 0.00 0.00 0.00 2.59
3025 9771 6.491714 AATCTCATGGCACTAACTATGTCT 57.508 37.500 0.00 0.00 0.00 3.41
3026 9772 7.928706 ACTAAATCTCATGGCACTAACTATGTC 59.071 37.037 0.00 0.00 0.00 3.06
3027 9773 7.796054 ACTAAATCTCATGGCACTAACTATGT 58.204 34.615 0.00 0.00 0.00 2.29
3028 9774 9.764363 TTACTAAATCTCATGGCACTAACTATG 57.236 33.333 0.00 0.00 0.00 2.23
3030 9776 9.595823 GTTTACTAAATCTCATGGCACTAACTA 57.404 33.333 0.00 0.00 0.00 2.24
3031 9777 8.100791 TGTTTACTAAATCTCATGGCACTAACT 58.899 33.333 0.00 0.00 0.00 2.24
3032 9778 8.263940 TGTTTACTAAATCTCATGGCACTAAC 57.736 34.615 0.00 0.00 0.00 2.34
3034 9780 9.764363 CTATGTTTACTAAATCTCATGGCACTA 57.236 33.333 0.00 0.00 0.00 2.74
3035 9781 8.267894 ACTATGTTTACTAAATCTCATGGCACT 58.732 33.333 0.00 0.00 0.00 4.40
3036 9782 8.438676 ACTATGTTTACTAAATCTCATGGCAC 57.561 34.615 0.00 0.00 0.00 5.01
3037 9783 8.892723 CAACTATGTTTACTAAATCTCATGGCA 58.107 33.333 0.00 0.00 0.00 4.92
3038 9784 8.893727 ACAACTATGTTTACTAAATCTCATGGC 58.106 33.333 0.00 0.00 35.91 4.40
3062 9808 9.727859 TGGCACTAATTACTTTATTACAAGACA 57.272 29.630 0.00 0.00 0.00 3.41
3073 9819 9.860898 GAAAAATCTCATGGCACTAATTACTTT 57.139 29.630 0.00 0.00 0.00 2.66
3074 9820 8.470002 GGAAAAATCTCATGGCACTAATTACTT 58.530 33.333 0.00 0.00 0.00 2.24
3075 9821 7.068716 GGGAAAAATCTCATGGCACTAATTACT 59.931 37.037 0.00 0.00 0.00 2.24
3076 9822 7.203218 GGGAAAAATCTCATGGCACTAATTAC 58.797 38.462 0.00 0.00 0.00 1.89
3077 9823 6.039270 CGGGAAAAATCTCATGGCACTAATTA 59.961 38.462 0.00 0.00 0.00 1.40
3078 9824 5.163519 CGGGAAAAATCTCATGGCACTAATT 60.164 40.000 0.00 0.00 0.00 1.40
3079 9825 4.339247 CGGGAAAAATCTCATGGCACTAAT 59.661 41.667 0.00 0.00 0.00 1.73
3080 9826 3.694072 CGGGAAAAATCTCATGGCACTAA 59.306 43.478 0.00 0.00 0.00 2.24
3081 9827 3.278574 CGGGAAAAATCTCATGGCACTA 58.721 45.455 0.00 0.00 0.00 2.74
3082 9828 2.094675 CGGGAAAAATCTCATGGCACT 58.905 47.619 0.00 0.00 0.00 4.40
3083 9829 1.818674 ACGGGAAAAATCTCATGGCAC 59.181 47.619 0.00 0.00 0.00 5.01
3084 9830 2.091541 GACGGGAAAAATCTCATGGCA 58.908 47.619 0.00 0.00 0.00 4.92
3085 9831 2.091541 TGACGGGAAAAATCTCATGGC 58.908 47.619 0.00 0.00 0.00 4.40
3086 9832 3.947196 TCATGACGGGAAAAATCTCATGG 59.053 43.478 0.00 0.00 39.06 3.66
3087 9833 5.762825 ATCATGACGGGAAAAATCTCATG 57.237 39.130 0.00 0.00 39.65 3.07
3088 9834 6.125029 AGAATCATGACGGGAAAAATCTCAT 58.875 36.000 0.00 0.00 0.00 2.90
3089 9835 5.500234 AGAATCATGACGGGAAAAATCTCA 58.500 37.500 0.00 0.00 0.00 3.27
3090 9836 6.442513 AAGAATCATGACGGGAAAAATCTC 57.557 37.500 0.00 0.00 0.00 2.75
3091 9837 6.884295 TGTAAGAATCATGACGGGAAAAATCT 59.116 34.615 0.00 0.00 0.00 2.40
3092 9838 7.083875 TGTAAGAATCATGACGGGAAAAATC 57.916 36.000 0.00 0.00 0.00 2.17
3093 9839 7.122650 ACATGTAAGAATCATGACGGGAAAAAT 59.877 33.333 11.92 0.00 43.47 1.82
3094 9840 6.432783 ACATGTAAGAATCATGACGGGAAAAA 59.567 34.615 11.92 0.00 43.47 1.94
3095 9841 5.943416 ACATGTAAGAATCATGACGGGAAAA 59.057 36.000 11.92 0.00 43.47 2.29
3096 9842 5.496556 ACATGTAAGAATCATGACGGGAAA 58.503 37.500 11.92 0.00 43.47 3.13
3097 9843 5.097742 ACATGTAAGAATCATGACGGGAA 57.902 39.130 11.92 0.00 43.47 3.97
3098 9844 4.161377 TGACATGTAAGAATCATGACGGGA 59.839 41.667 0.00 0.00 43.47 5.14
3099 9845 4.441792 TGACATGTAAGAATCATGACGGG 58.558 43.478 0.00 0.00 43.47 5.28
3100 9846 6.258507 TGATTGACATGTAAGAATCATGACGG 59.741 38.462 17.40 0.00 43.47 4.79
3101 9847 7.237920 TGATTGACATGTAAGAATCATGACG 57.762 36.000 17.40 0.00 43.47 4.35
3102 9848 9.844790 TTTTGATTGACATGTAAGAATCATGAC 57.155 29.630 20.10 7.06 43.47 3.06
3126 9872 2.867368 TCGCAGTGACATACGTGTTTTT 59.133 40.909 0.00 0.00 39.09 1.94
3127 9873 2.475818 TCGCAGTGACATACGTGTTTT 58.524 42.857 0.00 0.00 39.09 2.43
3128 9874 2.143008 TCGCAGTGACATACGTGTTT 57.857 45.000 0.00 0.00 39.09 2.83
3129 9875 3.877874 TCGCAGTGACATACGTGTT 57.122 47.368 0.00 0.00 39.09 3.32
3139 9885 1.374631 GTGGCATCTGTCGCAGTGA 60.375 57.895 0.00 0.00 32.61 3.41
3140 9886 1.022982 ATGTGGCATCTGTCGCAGTG 61.023 55.000 4.25 6.11 43.83 3.66
3141 9887 0.321919 AATGTGGCATCTGTCGCAGT 60.322 50.000 4.25 0.00 43.83 4.40
3142 9888 0.806868 AAATGTGGCATCTGTCGCAG 59.193 50.000 4.25 1.02 43.83 5.18
3143 9889 1.246649 AAAATGTGGCATCTGTCGCA 58.753 45.000 0.00 0.00 44.75 5.10
3144 9890 2.352503 AAAAATGTGGCATCTGTCGC 57.647 45.000 0.00 0.00 0.00 5.19
3162 9908 9.477484 GAGTGTGTAATACTTTTCAGAGAGAAA 57.523 33.333 0.00 0.00 38.91 2.52
3163 9909 8.861086 AGAGTGTGTAATACTTTTCAGAGAGAA 58.139 33.333 0.00 0.00 38.91 2.87
3164 9910 8.410673 AGAGTGTGTAATACTTTTCAGAGAGA 57.589 34.615 0.00 0.00 38.91 3.10
3165 9911 9.781834 CTAGAGTGTGTAATACTTTTCAGAGAG 57.218 37.037 0.00 0.00 38.91 3.20
3166 9912 8.244802 GCTAGAGTGTGTAATACTTTTCAGAGA 58.755 37.037 0.00 0.00 38.91 3.10
3167 9913 8.247562 AGCTAGAGTGTGTAATACTTTTCAGAG 58.752 37.037 0.00 0.00 38.91 3.35
3168 9914 8.123639 AGCTAGAGTGTGTAATACTTTTCAGA 57.876 34.615 0.00 0.00 38.91 3.27
3169 9915 8.764524 AAGCTAGAGTGTGTAATACTTTTCAG 57.235 34.615 0.00 0.00 38.91 3.02
3178 9924 9.935241 CCATGATATAAAGCTAGAGTGTGTAAT 57.065 33.333 0.00 0.00 0.00 1.89
3179 9925 8.924303 ACCATGATATAAAGCTAGAGTGTGTAA 58.076 33.333 0.00 0.00 0.00 2.41
3180 9926 8.478775 ACCATGATATAAAGCTAGAGTGTGTA 57.521 34.615 0.00 0.00 0.00 2.90
3181 9927 7.366847 ACCATGATATAAAGCTAGAGTGTGT 57.633 36.000 0.00 0.00 0.00 3.72
3182 9928 9.764363 TTTACCATGATATAAAGCTAGAGTGTG 57.236 33.333 0.00 0.00 0.00 3.82
3197 9943 9.964303 GTGCATTGATGTTTATTTACCATGATA 57.036 29.630 0.00 0.00 0.00 2.15
3198 9944 8.698210 AGTGCATTGATGTTTATTTACCATGAT 58.302 29.630 0.00 0.00 0.00 2.45
3199 9945 8.065473 AGTGCATTGATGTTTATTTACCATGA 57.935 30.769 0.00 0.00 0.00 3.07
3200 9946 9.970395 ATAGTGCATTGATGTTTATTTACCATG 57.030 29.630 0.00 0.00 0.00 3.66
3207 9953 9.793252 GTTCAGAATAGTGCATTGATGTTTATT 57.207 29.630 0.00 0.00 0.00 1.40
3208 9954 8.408601 GGTTCAGAATAGTGCATTGATGTTTAT 58.591 33.333 0.00 0.00 0.00 1.40
3209 9955 7.611467 AGGTTCAGAATAGTGCATTGATGTTTA 59.389 33.333 0.00 0.00 0.00 2.01
3210 9956 6.435277 AGGTTCAGAATAGTGCATTGATGTTT 59.565 34.615 0.00 0.00 0.00 2.83
3211 9957 5.948162 AGGTTCAGAATAGTGCATTGATGTT 59.052 36.000 0.00 0.00 0.00 2.71
3212 9958 5.503927 AGGTTCAGAATAGTGCATTGATGT 58.496 37.500 0.00 0.00 0.00 3.06
3213 9959 6.318144 AGAAGGTTCAGAATAGTGCATTGATG 59.682 38.462 0.00 0.00 0.00 3.07
3214 9960 6.421485 AGAAGGTTCAGAATAGTGCATTGAT 58.579 36.000 0.00 0.00 0.00 2.57
3215 9961 5.809001 AGAAGGTTCAGAATAGTGCATTGA 58.191 37.500 0.00 0.00 0.00 2.57
3216 9962 7.414540 GGTTAGAAGGTTCAGAATAGTGCATTG 60.415 40.741 0.00 0.00 0.00 2.82
3217 9963 6.599638 GGTTAGAAGGTTCAGAATAGTGCATT 59.400 38.462 0.00 0.00 0.00 3.56
3218 9964 6.116126 GGTTAGAAGGTTCAGAATAGTGCAT 58.884 40.000 0.00 0.00 0.00 3.96
3219 9965 5.488341 GGTTAGAAGGTTCAGAATAGTGCA 58.512 41.667 0.00 0.00 0.00 4.57
3220 9966 4.876679 GGGTTAGAAGGTTCAGAATAGTGC 59.123 45.833 0.00 0.00 0.00 4.40
3221 9967 6.049955 TGGGTTAGAAGGTTCAGAATAGTG 57.950 41.667 0.00 0.00 0.00 2.74
3222 9968 6.893020 ATGGGTTAGAAGGTTCAGAATAGT 57.107 37.500 0.00 0.00 0.00 2.12
3223 9969 8.265055 TGTTATGGGTTAGAAGGTTCAGAATAG 58.735 37.037 0.00 0.00 0.00 1.73
3224 9970 8.153221 TGTTATGGGTTAGAAGGTTCAGAATA 57.847 34.615 0.00 0.00 0.00 1.75
3225 9971 7.027874 TGTTATGGGTTAGAAGGTTCAGAAT 57.972 36.000 0.00 0.00 0.00 2.40
3226 9972 6.442541 TGTTATGGGTTAGAAGGTTCAGAA 57.557 37.500 0.00 0.00 0.00 3.02
3227 9973 6.043938 ACTTGTTATGGGTTAGAAGGTTCAGA 59.956 38.462 0.00 0.00 0.00 3.27
3228 9974 6.238648 ACTTGTTATGGGTTAGAAGGTTCAG 58.761 40.000 0.00 0.00 0.00 3.02
3229 9975 6.195600 ACTTGTTATGGGTTAGAAGGTTCA 57.804 37.500 0.00 0.00 0.00 3.18
3230 9976 7.520451 AAACTTGTTATGGGTTAGAAGGTTC 57.480 36.000 0.00 0.00 0.00 3.62
3231 9977 7.783119 AGAAAACTTGTTATGGGTTAGAAGGTT 59.217 33.333 0.00 0.00 0.00 3.50
3232 9978 7.295340 AGAAAACTTGTTATGGGTTAGAAGGT 58.705 34.615 0.00 0.00 0.00 3.50
3233 9979 7.761038 AGAAAACTTGTTATGGGTTAGAAGG 57.239 36.000 0.00 0.00 0.00 3.46
3235 9981 8.789762 GCTTAGAAAACTTGTTATGGGTTAGAA 58.210 33.333 0.00 0.00 0.00 2.10
3236 9982 7.940137 TGCTTAGAAAACTTGTTATGGGTTAGA 59.060 33.333 0.00 0.00 0.00 2.10
3237 9983 8.106247 TGCTTAGAAAACTTGTTATGGGTTAG 57.894 34.615 0.00 0.00 0.00 2.34
3238 9984 7.940137 TCTGCTTAGAAAACTTGTTATGGGTTA 59.060 33.333 0.00 0.00 0.00 2.85
3239 9985 6.775629 TCTGCTTAGAAAACTTGTTATGGGTT 59.224 34.615 0.00 0.00 0.00 4.11
3240 9986 6.206829 GTCTGCTTAGAAAACTTGTTATGGGT 59.793 38.462 0.00 0.00 0.00 4.51
3241 9987 6.431234 AGTCTGCTTAGAAAACTTGTTATGGG 59.569 38.462 0.00 0.00 0.00 4.00
3242 9988 7.440523 AGTCTGCTTAGAAAACTTGTTATGG 57.559 36.000 0.00 0.00 0.00 2.74
3243 9989 7.095607 ACGAGTCTGCTTAGAAAACTTGTTATG 60.096 37.037 0.00 0.00 31.98 1.90
3244 9990 6.929606 ACGAGTCTGCTTAGAAAACTTGTTAT 59.070 34.615 0.00 0.00 31.98 1.89
3245 9991 6.200286 CACGAGTCTGCTTAGAAAACTTGTTA 59.800 38.462 0.00 0.00 33.35 2.41
3246 9992 5.006746 CACGAGTCTGCTTAGAAAACTTGTT 59.993 40.000 0.00 0.00 33.35 2.83
3247 9993 4.508124 CACGAGTCTGCTTAGAAAACTTGT 59.492 41.667 0.00 0.00 35.46 3.16
3248 9994 4.508124 ACACGAGTCTGCTTAGAAAACTTG 59.492 41.667 0.00 0.00 0.00 3.16
3249 9995 4.694339 ACACGAGTCTGCTTAGAAAACTT 58.306 39.130 0.00 0.00 0.00 2.66
3250 9996 4.323553 ACACGAGTCTGCTTAGAAAACT 57.676 40.909 0.00 0.00 0.00 2.66
3251 9997 5.387137 CGTAACACGAGTCTGCTTAGAAAAC 60.387 44.000 0.00 0.00 46.05 2.43
3252 9998 4.678287 CGTAACACGAGTCTGCTTAGAAAA 59.322 41.667 0.00 0.00 46.05 2.29
3253 9999 4.224433 CGTAACACGAGTCTGCTTAGAAA 58.776 43.478 0.00 0.00 46.05 2.52
3254 10000 3.365666 CCGTAACACGAGTCTGCTTAGAA 60.366 47.826 0.00 0.00 46.05 2.10
3255 10001 2.161012 CCGTAACACGAGTCTGCTTAGA 59.839 50.000 0.00 0.00 46.05 2.10
3256 10002 2.095364 ACCGTAACACGAGTCTGCTTAG 60.095 50.000 0.00 0.00 46.05 2.18
3257 10003 1.881973 ACCGTAACACGAGTCTGCTTA 59.118 47.619 0.00 0.00 46.05 3.09
3258 10004 0.672342 ACCGTAACACGAGTCTGCTT 59.328 50.000 0.00 0.00 46.05 3.91
3259 10005 1.467734 CTACCGTAACACGAGTCTGCT 59.532 52.381 0.00 0.00 46.05 4.24
3260 10006 1.892468 CTACCGTAACACGAGTCTGC 58.108 55.000 0.00 0.00 46.05 4.26
3261 10007 1.198408 TGCTACCGTAACACGAGTCTG 59.802 52.381 0.00 0.00 46.05 3.51
3262 10008 1.198637 GTGCTACCGTAACACGAGTCT 59.801 52.381 0.00 0.00 46.05 3.24
3263 10009 1.069022 TGTGCTACCGTAACACGAGTC 60.069 52.381 7.42 0.00 46.05 3.36
3264 10010 0.953727 TGTGCTACCGTAACACGAGT 59.046 50.000 7.42 0.00 46.05 4.18
3265 10011 2.054687 TTGTGCTACCGTAACACGAG 57.945 50.000 7.42 0.00 46.05 4.18
3266 10012 2.505628 TTTGTGCTACCGTAACACGA 57.494 45.000 7.42 3.30 46.05 4.35
3267 10013 4.168014 TCTATTTGTGCTACCGTAACACG 58.832 43.478 7.42 0.00 42.11 4.49
3268 10014 5.404946 TCTCTATTTGTGCTACCGTAACAC 58.595 41.667 5.31 5.31 34.86 3.32
3269 10015 5.416639 TCTCTCTATTTGTGCTACCGTAACA 59.583 40.000 0.00 0.00 0.00 2.41
3270 10016 5.888105 TCTCTCTATTTGTGCTACCGTAAC 58.112 41.667 0.00 0.00 0.00 2.50
3271 10017 6.504398 CATCTCTCTATTTGTGCTACCGTAA 58.496 40.000 0.00 0.00 0.00 3.18
3272 10018 5.507482 GCATCTCTCTATTTGTGCTACCGTA 60.507 44.000 0.00 0.00 0.00 4.02
3273 10019 4.737946 GCATCTCTCTATTTGTGCTACCGT 60.738 45.833 0.00 0.00 0.00 4.83
3274 10020 3.738282 GCATCTCTCTATTTGTGCTACCG 59.262 47.826 0.00 0.00 0.00 4.02
3275 10021 4.954875 AGCATCTCTCTATTTGTGCTACC 58.045 43.478 0.00 0.00 40.76 3.18
3276 10022 7.374272 TCATAGCATCTCTCTATTTGTGCTAC 58.626 38.462 6.99 0.00 44.80 3.58
3277 10023 7.530426 TCATAGCATCTCTCTATTTGTGCTA 57.470 36.000 7.26 7.26 45.68 3.49
3278 10024 6.416631 TCATAGCATCTCTCTATTTGTGCT 57.583 37.500 3.08 3.08 44.29 4.40
3279 10025 7.488187 TTTCATAGCATCTCTCTATTTGTGC 57.512 36.000 0.00 0.00 0.00 4.57
3280 10026 9.713740 GTTTTTCATAGCATCTCTCTATTTGTG 57.286 33.333 0.00 0.00 0.00 3.33
3281 10027 8.897752 GGTTTTTCATAGCATCTCTCTATTTGT 58.102 33.333 0.00 0.00 0.00 2.83
3282 10028 9.118300 AGGTTTTTCATAGCATCTCTCTATTTG 57.882 33.333 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.