Multiple sequence alignment - TraesCS2D01G520500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G520500 chr2D 100.000 4493 0 0 1 4493 609580353 609575861 0.000000e+00 8298.0
1 TraesCS2D01G520500 chr2D 100.000 320 0 0 4592 4911 609575762 609575443 4.230000e-165 592.0
2 TraesCS2D01G520500 chr2D 90.312 320 31 0 4592 4911 44458192 44458511 2.110000e-113 420.0
3 TraesCS2D01G520500 chr2B 93.812 3539 121 39 726 4243 744081351 744084812 0.000000e+00 5232.0
4 TraesCS2D01G520500 chr2B 86.104 367 32 4 197 546 744080998 744081362 1.290000e-100 377.0
5 TraesCS2D01G520500 chr2B 94.819 193 9 1 4228 4419 744086158 744086350 2.870000e-77 300.0
6 TraesCS2D01G520500 chr2B 92.188 192 12 2 548 739 743583055 743582867 8.100000e-68 268.0
7 TraesCS2D01G520500 chr2B 100.000 31 0 0 384 414 18383451 18383421 1.910000e-04 58.4
8 TraesCS2D01G520500 chr2A 93.738 2044 84 22 2207 4234 742581678 742579663 0.000000e+00 3025.0
9 TraesCS2D01G520500 chr2A 94.398 1303 53 13 733 2025 742583013 742581721 0.000000e+00 1984.0
10 TraesCS2D01G520500 chr2A 81.921 531 45 19 38 547 742583507 742583007 7.660000e-108 401.0
11 TraesCS2D01G520500 chr5D 90.909 319 29 0 4592 4910 434443107 434442789 3.510000e-116 429.0
12 TraesCS2D01G520500 chr5D 90.625 320 30 0 4592 4911 374655902 374655583 4.540000e-115 425.0
13 TraesCS2D01G520500 chr5D 89.688 320 33 0 4592 4911 30944189 30943870 4.580000e-110 409.0
14 TraesCS2D01G520500 chr5D 93.506 154 8 1 2040 2191 337582978 337583131 1.380000e-55 228.0
15 TraesCS2D01G520500 chr5D 92.308 156 11 1 2040 2194 230660477 230660322 2.300000e-53 220.0
16 TraesCS2D01G520500 chr5D 92.308 156 11 1 2040 2194 355117108 355116953 2.300000e-53 220.0
17 TraesCS2D01G520500 chr3D 90.625 320 30 0 4592 4911 506000200 506000519 4.540000e-115 425.0
18 TraesCS2D01G520500 chr3D 90.000 320 31 1 4592 4911 588018890 588018572 3.540000e-111 412.0
19 TraesCS2D01G520500 chr3D 93.514 185 8 3 547 731 104098851 104099031 6.260000e-69 272.0
20 TraesCS2D01G520500 chr3D 93.514 185 9 2 548 732 486691458 486691639 6.260000e-69 272.0
21 TraesCS2D01G520500 chr3D 92.973 185 9 2 548 732 517482465 517482285 2.910000e-67 267.0
22 TraesCS2D01G520500 chr3D 91.979 187 14 1 4234 4419 596448365 596448551 1.360000e-65 261.0
23 TraesCS2D01G520500 chr3D 91.192 193 13 2 550 742 506177136 506177324 4.880000e-65 259.0
24 TraesCS2D01G520500 chr3D 92.258 155 11 1 2041 2194 122144091 122144245 8.280000e-53 219.0
25 TraesCS2D01G520500 chr1D 90.625 320 30 0 4592 4911 408413071 408412752 4.540000e-115 425.0
26 TraesCS2D01G520500 chr4D 90.343 321 29 2 4592 4911 451695014 451694695 2.110000e-113 420.0
27 TraesCS2D01G520500 chr4D 90.000 320 32 0 4592 4911 502490813 502491132 9.840000e-112 414.0
28 TraesCS2D01G520500 chr5B 93.048 187 8 4 547 732 92234692 92234874 8.100000e-68 268.0
29 TraesCS2D01G520500 chr5B 92.308 156 10 2 2040 2194 212308236 212308082 2.300000e-53 220.0
30 TraesCS2D01G520500 chr7B 92.105 190 10 4 550 739 94187052 94186868 3.770000e-66 263.0
31 TraesCS2D01G520500 chr7B 91.710 193 10 3 548 740 606591261 606591075 3.770000e-66 263.0
32 TraesCS2D01G520500 chr7B 92.593 54 3 1 454 506 290078017 290078070 5.270000e-10 76.8
33 TraesCS2D01G520500 chr7B 87.097 62 6 2 454 514 212411888 212411828 8.820000e-08 69.4
34 TraesCS2D01G520500 chr6B 90.909 198 12 3 535 730 116820931 116821124 1.360000e-65 261.0
35 TraesCS2D01G520500 chr3B 91.979 187 14 1 4234 4419 802779249 802779435 1.360000e-65 261.0
36 TraesCS2D01G520500 chr3B 100.000 30 0 0 385 414 92597250 92597279 6.870000e-04 56.5
37 TraesCS2D01G520500 chr7D 92.857 154 9 1 2040 2191 192762932 192763085 6.400000e-54 222.0
38 TraesCS2D01G520500 chr7D 92.810 153 10 1 2040 2191 567065226 567065378 2.300000e-53 220.0
39 TraesCS2D01G520500 chr7D 92.593 54 3 1 454 506 305134827 305134774 5.270000e-10 76.8
40 TraesCS2D01G520500 chr6D 91.667 156 12 1 2040 2194 132148139 132147984 1.070000e-51 215.0
41 TraesCS2D01G520500 chr6D 84.507 71 8 3 445 514 1795806 1795738 3.170000e-07 67.6
42 TraesCS2D01G520500 chr7A 92.453 53 3 1 455 506 353917951 353917899 1.900000e-09 75.0
43 TraesCS2D01G520500 chr4B 85.507 69 7 3 447 514 472388270 472388204 8.820000e-08 69.4
44 TraesCS2D01G520500 chr4B 100.000 28 0 0 3909 3936 588694485 588694512 9.000000e-03 52.8
45 TraesCS2D01G520500 chr3A 83.784 74 7 4 453 524 528595262 528595192 1.140000e-06 65.8
46 TraesCS2D01G520500 chr5A 82.895 76 8 5 428 502 184233219 184233290 4.100000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G520500 chr2D 609575443 609580353 4910 True 4445.000000 8298 100.000000 1 4911 2 chr2D.!!$R1 4910
1 TraesCS2D01G520500 chr2B 744080998 744086350 5352 False 1969.666667 5232 91.578333 197 4419 3 chr2B.!!$F1 4222
2 TraesCS2D01G520500 chr2A 742579663 742583507 3844 True 1803.333333 3025 90.019000 38 4234 3 chr2A.!!$R1 4196

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
128 129 0.460311 AGCTTAGCGTAGGCACGATT 59.540 50.0 10.48 3.8 46.33 3.34 F
2003 2031 0.179084 CGCCACCATGTAATCCGTCT 60.179 55.0 0.00 0.0 0.00 4.18 F
2183 2213 0.116342 TCTAGCCTGGGTTGGTCTCA 59.884 55.0 2.65 0.0 0.00 3.27 F
3031 3089 1.557443 GACGTGTTGAGGTTCAGGCG 61.557 60.0 0.00 0.0 0.00 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2050 2078 0.606401 GCCTTGCCAACTGAGCTACA 60.606 55.000 0.00 0.00 0.0 2.74 R
2883 2939 0.528470 TACGGTCGCATCACATCACA 59.472 50.000 0.00 0.00 0.0 3.58 R
3793 3855 1.140375 CCAGGCGTACGGTTAGGAC 59.860 63.158 18.39 0.00 0.0 3.85 R
4881 6315 0.036294 GCACCTCCTGTACAGAACCC 60.036 60.000 24.68 3.74 0.0 4.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.654749 TCGGTGACAATCTGCTGTAG 57.345 50.000 0.00 0.00 0.00 2.74
20 21 2.167662 TCGGTGACAATCTGCTGTAGA 58.832 47.619 0.00 0.00 40.37 2.59
21 22 2.560981 TCGGTGACAATCTGCTGTAGAA 59.439 45.455 0.00 0.00 39.30 2.10
22 23 3.195610 TCGGTGACAATCTGCTGTAGAAT 59.804 43.478 0.00 0.00 39.30 2.40
23 24 4.401202 TCGGTGACAATCTGCTGTAGAATA 59.599 41.667 0.00 0.00 39.30 1.75
24 25 5.069119 TCGGTGACAATCTGCTGTAGAATAT 59.931 40.000 0.00 0.00 39.30 1.28
25 26 5.176406 CGGTGACAATCTGCTGTAGAATATG 59.824 44.000 0.00 2.75 39.30 1.78
26 27 6.051717 GGTGACAATCTGCTGTAGAATATGT 58.948 40.000 0.00 5.83 39.30 2.29
27 28 7.210174 GGTGACAATCTGCTGTAGAATATGTA 58.790 38.462 0.00 0.00 39.30 2.29
28 29 7.875041 GGTGACAATCTGCTGTAGAATATGTAT 59.125 37.037 0.00 0.00 39.30 2.29
29 30 8.920665 GTGACAATCTGCTGTAGAATATGTATC 58.079 37.037 0.00 0.56 39.30 2.24
30 31 7.809806 TGACAATCTGCTGTAGAATATGTATCG 59.190 37.037 0.00 0.00 39.30 2.92
31 32 6.587990 ACAATCTGCTGTAGAATATGTATCGC 59.412 38.462 0.00 0.00 39.30 4.58
32 33 5.966742 TCTGCTGTAGAATATGTATCGCT 57.033 39.130 0.00 0.00 30.84 4.93
33 34 5.703876 TCTGCTGTAGAATATGTATCGCTG 58.296 41.667 0.00 0.00 30.84 5.18
34 35 5.473504 TCTGCTGTAGAATATGTATCGCTGA 59.526 40.000 0.00 0.00 30.84 4.26
35 36 6.016276 TCTGCTGTAGAATATGTATCGCTGAA 60.016 38.462 0.00 0.00 30.84 3.02
36 37 5.920840 TGCTGTAGAATATGTATCGCTGAAC 59.079 40.000 0.00 0.00 0.00 3.18
37 38 5.920840 GCTGTAGAATATGTATCGCTGAACA 59.079 40.000 0.00 0.00 0.00 3.18
38 39 6.088749 GCTGTAGAATATGTATCGCTGAACAG 59.911 42.308 0.00 0.00 34.14 3.16
90 91 2.683475 GTGGGCCAGCCATTACCT 59.317 61.111 6.40 0.00 37.98 3.08
91 92 1.453928 GTGGGCCAGCCATTACCTC 60.454 63.158 6.40 0.00 37.98 3.85
92 93 2.195956 GGGCCAGCCATTACCTCC 59.804 66.667 11.50 0.00 37.98 4.30
93 94 2.203209 GGCCAGCCATTACCTCCG 60.203 66.667 3.12 0.00 35.81 4.63
94 95 2.203209 GCCAGCCATTACCTCCGG 60.203 66.667 0.00 0.00 0.00 5.14
101 102 1.949465 CCATTACCTCCGGTTGCTAC 58.051 55.000 0.00 0.00 37.09 3.58
103 104 1.134907 CATTACCTCCGGTTGCTACGT 60.135 52.381 0.00 0.00 37.09 3.57
119 120 4.526970 CTACGTCTTGTAGCTTAGCGTA 57.473 45.455 0.00 5.79 43.84 4.42
122 123 2.461903 GTCTTGTAGCTTAGCGTAGGC 58.538 52.381 0.00 0.00 40.37 3.93
128 129 0.460311 AGCTTAGCGTAGGCACGATT 59.540 50.000 10.48 3.80 46.33 3.34
132 133 1.635844 TAGCGTAGGCACGATTTGTG 58.364 50.000 10.48 0.00 46.33 3.33
302 305 8.742554 ATGATCACGGATTTAAAAACTGTTTC 57.257 30.769 6.20 8.10 0.00 2.78
382 387 5.435291 TGAGTTTGAAAATTTTGGCATGGT 58.565 33.333 8.47 0.00 0.00 3.55
387 392 5.415415 TGAAAATTTTGGCATGGTTTTCG 57.585 34.783 8.47 0.00 40.07 3.46
394 416 7.736447 ATTTTGGCATGGTTTTCGAAAAATA 57.264 28.000 24.04 16.04 0.00 1.40
434 456 8.514330 AAATGATCATGGATTTGGAAAATTGG 57.486 30.769 9.46 0.00 0.00 3.16
483 505 4.396478 TCCGATCCAAATTAATTGACGCAA 59.604 37.500 0.39 0.00 41.85 4.85
568 590 9.965902 AAAAATCTGTTTAGGACACATCTAGAT 57.034 29.630 0.00 0.00 33.82 1.98
569 591 8.954950 AAATCTGTTTAGGACACATCTAGATG 57.045 34.615 27.63 27.63 44.15 2.90
609 631 5.728471 CATCTAAACTGATGTCCACTCTGT 58.272 41.667 0.00 0.00 39.05 3.41
610 632 5.808366 TCTAAACTGATGTCCACTCTGTT 57.192 39.130 0.00 0.00 36.66 3.16
611 633 6.174720 TCTAAACTGATGTCCACTCTGTTT 57.825 37.500 11.33 11.33 43.11 2.83
612 634 5.991606 TCTAAACTGATGTCCACTCTGTTTG 59.008 40.000 14.59 7.92 41.71 2.93
613 635 3.845781 ACTGATGTCCACTCTGTTTGT 57.154 42.857 0.00 0.00 0.00 2.83
614 636 3.470709 ACTGATGTCCACTCTGTTTGTG 58.529 45.455 0.00 0.00 35.39 3.33
615 637 2.221169 TGATGTCCACTCTGTTTGTGC 58.779 47.619 0.00 0.00 34.38 4.57
616 638 2.158769 TGATGTCCACTCTGTTTGTGCT 60.159 45.455 0.00 0.00 34.38 4.40
617 639 1.953559 TGTCCACTCTGTTTGTGCTC 58.046 50.000 0.00 0.00 34.38 4.26
618 640 1.486310 TGTCCACTCTGTTTGTGCTCT 59.514 47.619 0.00 0.00 34.38 4.09
619 641 2.698274 TGTCCACTCTGTTTGTGCTCTA 59.302 45.455 0.00 0.00 34.38 2.43
620 642 3.324846 TGTCCACTCTGTTTGTGCTCTAT 59.675 43.478 0.00 0.00 34.38 1.98
621 643 4.202357 TGTCCACTCTGTTTGTGCTCTATT 60.202 41.667 0.00 0.00 34.38 1.73
622 644 4.757149 GTCCACTCTGTTTGTGCTCTATTT 59.243 41.667 0.00 0.00 34.38 1.40
623 645 5.239525 GTCCACTCTGTTTGTGCTCTATTTT 59.760 40.000 0.00 0.00 34.38 1.82
624 646 5.827797 TCCACTCTGTTTGTGCTCTATTTTT 59.172 36.000 0.00 0.00 34.38 1.94
664 686 5.876612 TTTTTGTTTCTTGTTGCTGCATT 57.123 30.435 1.84 0.00 0.00 3.56
665 687 6.974932 TTTTTGTTTCTTGTTGCTGCATTA 57.025 29.167 1.84 0.00 0.00 1.90
666 688 7.551035 TTTTTGTTTCTTGTTGCTGCATTAT 57.449 28.000 1.84 0.00 0.00 1.28
667 689 8.654230 TTTTTGTTTCTTGTTGCTGCATTATA 57.346 26.923 1.84 0.00 0.00 0.98
668 690 8.830201 TTTTGTTTCTTGTTGCTGCATTATAT 57.170 26.923 1.84 0.00 0.00 0.86
669 691 9.920133 TTTTGTTTCTTGTTGCTGCATTATATA 57.080 25.926 1.84 0.00 0.00 0.86
675 697 9.518906 TTCTTGTTGCTGCATTATATATTTGTG 57.481 29.630 1.84 0.00 0.00 3.33
676 698 8.136800 TCTTGTTGCTGCATTATATATTTGTGG 58.863 33.333 1.84 0.00 0.00 4.17
677 699 6.747125 TGTTGCTGCATTATATATTTGTGGG 58.253 36.000 1.84 0.00 0.00 4.61
678 700 6.548993 TGTTGCTGCATTATATATTTGTGGGA 59.451 34.615 1.84 0.00 0.00 4.37
679 701 6.822667 TGCTGCATTATATATTTGTGGGAG 57.177 37.500 0.00 0.00 0.00 4.30
680 702 5.183713 TGCTGCATTATATATTTGTGGGAGC 59.816 40.000 0.00 0.00 0.00 4.70
681 703 5.416952 GCTGCATTATATATTTGTGGGAGCT 59.583 40.000 0.00 0.00 0.00 4.09
682 704 6.071728 GCTGCATTATATATTTGTGGGAGCTT 60.072 38.462 0.00 0.00 0.00 3.74
683 705 7.121168 GCTGCATTATATATTTGTGGGAGCTTA 59.879 37.037 0.00 0.00 0.00 3.09
684 706 8.565896 TGCATTATATATTTGTGGGAGCTTAG 57.434 34.615 0.00 0.00 0.00 2.18
685 707 8.382405 TGCATTATATATTTGTGGGAGCTTAGA 58.618 33.333 0.00 0.00 0.00 2.10
686 708 9.401058 GCATTATATATTTGTGGGAGCTTAGAT 57.599 33.333 0.00 0.00 0.00 1.98
689 711 9.725019 TTATATATTTGTGGGAGCTTAGATGTG 57.275 33.333 0.00 0.00 0.00 3.21
690 712 4.574674 ATTTGTGGGAGCTTAGATGTGA 57.425 40.909 0.00 0.00 0.00 3.58
691 713 4.574674 TTTGTGGGAGCTTAGATGTGAT 57.425 40.909 0.00 0.00 0.00 3.06
692 714 5.692115 TTTGTGGGAGCTTAGATGTGATA 57.308 39.130 0.00 0.00 0.00 2.15
693 715 5.894298 TTGTGGGAGCTTAGATGTGATAT 57.106 39.130 0.00 0.00 0.00 1.63
694 716 5.474578 TGTGGGAGCTTAGATGTGATATC 57.525 43.478 0.00 0.00 0.00 1.63
695 717 4.284490 TGTGGGAGCTTAGATGTGATATCC 59.716 45.833 0.00 0.00 0.00 2.59
696 718 4.530161 GTGGGAGCTTAGATGTGATATCCT 59.470 45.833 0.00 0.00 0.00 3.24
697 719 5.012561 GTGGGAGCTTAGATGTGATATCCTT 59.987 44.000 0.00 0.00 0.00 3.36
698 720 6.211584 GTGGGAGCTTAGATGTGATATCCTTA 59.788 42.308 0.00 0.00 0.00 2.69
699 721 6.787458 TGGGAGCTTAGATGTGATATCCTTAA 59.213 38.462 0.00 0.00 0.00 1.85
700 722 7.292356 TGGGAGCTTAGATGTGATATCCTTAAA 59.708 37.037 0.00 0.00 0.00 1.52
701 723 8.157476 GGGAGCTTAGATGTGATATCCTTAAAA 58.843 37.037 0.00 0.00 0.00 1.52
702 724 9.561069 GGAGCTTAGATGTGATATCCTTAAAAA 57.439 33.333 0.00 0.00 0.00 1.94
729 751 8.404889 CATCTAGATGTGAGTTAGACAAACTG 57.595 38.462 22.42 0.00 39.93 3.16
730 752 8.031864 CATCTAGATGTGAGTTAGACAAACTGT 58.968 37.037 22.42 0.00 39.93 3.55
759 781 7.857734 AAAATGTTTCCCCTACAAAAACTTG 57.142 32.000 0.00 0.00 34.69 3.16
793 815 1.323271 TTCCAAGTTGCCGTTGCCAA 61.323 50.000 0.00 0.00 36.33 4.52
794 816 1.591327 CCAAGTTGCCGTTGCCAAC 60.591 57.895 0.00 0.00 36.33 3.77
943 965 1.632018 CCCTTCCGCCATTACCCAGA 61.632 60.000 0.00 0.00 0.00 3.86
1129 1151 2.671963 GTCAAGGTTCCACCCCGC 60.672 66.667 0.00 0.00 39.75 6.13
1277 1302 2.890109 CTCATCGCCAATGCCTCGC 61.890 63.158 0.00 0.00 35.17 5.03
1334 1360 1.304134 GGTTCCCCCGCTGTTCATT 60.304 57.895 0.00 0.00 0.00 2.57
1409 1435 1.534595 GCATGCCCTAATTGTTCAGCG 60.535 52.381 6.36 0.00 0.00 5.18
1412 1438 0.733150 GCCCTAATTGTTCAGCGTCC 59.267 55.000 0.00 0.00 0.00 4.79
2003 2031 0.179084 CGCCACCATGTAATCCGTCT 60.179 55.000 0.00 0.00 0.00 4.18
2038 2066 4.262463 GGTTCAGTATCCTAATGATCGCCA 60.262 45.833 0.00 0.00 32.37 5.69
2039 2067 5.482908 GTTCAGTATCCTAATGATCGCCAT 58.517 41.667 0.00 0.00 32.37 4.40
2040 2068 5.077134 TCAGTATCCTAATGATCGCCATG 57.923 43.478 0.00 0.00 35.24 3.66
2050 2078 1.827344 TGATCGCCATGAGAACTGAGT 59.173 47.619 0.00 0.00 0.00 3.41
2107 2135 3.633361 CCACCAGGGTTCAAGTCTC 57.367 57.895 0.00 0.00 0.00 3.36
2109 2137 0.320771 CACCAGGGTTCAAGTCTCGG 60.321 60.000 0.00 0.00 0.00 4.63
2122 2150 0.944311 GTCTCGGCTTGAGCGTTTGA 60.944 55.000 0.00 0.00 44.86 2.69
2182 2212 0.537653 GTCTAGCCTGGGTTGGTCTC 59.462 60.000 2.65 0.00 0.00 3.36
2183 2213 0.116342 TCTAGCCTGGGTTGGTCTCA 59.884 55.000 2.65 0.00 0.00 3.27
2654 2710 2.372264 CCCTGATGGATGTTGGAAGTG 58.628 52.381 0.00 0.00 35.39 3.16
2701 2757 5.665459 GGACTCAGTAAGCATCAACATACT 58.335 41.667 0.00 0.00 0.00 2.12
2702 2758 6.459710 CGGACTCAGTAAGCATCAACATACTA 60.460 42.308 0.00 0.00 0.00 1.82
2703 2759 6.697892 GGACTCAGTAAGCATCAACATACTAC 59.302 42.308 0.00 0.00 0.00 2.73
2704 2760 7.170393 ACTCAGTAAGCATCAACATACTACA 57.830 36.000 0.00 0.00 0.00 2.74
2705 2761 7.261325 ACTCAGTAAGCATCAACATACTACAG 58.739 38.462 0.00 0.00 0.00 2.74
2743 2799 8.512138 GGTTTACTTGCTACACATACTGAATTT 58.488 33.333 0.00 0.00 0.00 1.82
2884 2940 3.322514 ACCAAACTCCGGTGTGATG 57.677 52.632 10.44 12.10 34.69 3.07
2898 2954 2.001872 TGTGATGTGATGTGATGCGAC 58.998 47.619 0.00 0.00 0.00 5.19
3031 3089 1.557443 GACGTGTTGAGGTTCAGGCG 61.557 60.000 0.00 0.00 0.00 5.52
3033 3091 2.281484 TGTTGAGGTTCAGGCGCC 60.281 61.111 21.89 21.89 0.00 6.53
3054 3116 2.528743 CCGACGGAGACATGCATGC 61.529 63.158 26.53 18.25 0.00 4.06
3055 3117 1.810853 CGACGGAGACATGCATGCA 60.811 57.895 26.53 25.04 0.00 3.96
3455 3517 4.595538 GTGTGCACGACGGTGGGA 62.596 66.667 13.13 0.00 44.54 4.37
3650 3712 2.202797 CACGGCCTCATCCTCGTG 60.203 66.667 0.00 0.00 44.98 4.35
3776 3838 2.438434 GGAGGTGGCACCCAATCG 60.438 66.667 32.30 0.00 39.75 3.34
3793 3855 2.589338 TCGTCGTCGGATCGATATTG 57.411 50.000 0.00 0.00 41.78 1.90
3997 4065 1.952990 TGTGATCTTTTTCAGCGCCAA 59.047 42.857 2.29 0.00 0.00 4.52
4038 4106 6.041637 ACATCATTAGTCGGTATAAAGGCTGA 59.958 38.462 0.00 0.00 0.00 4.26
4044 4112 6.026947 AGTCGGTATAAAGGCTGATGATAC 57.973 41.667 0.00 0.00 0.00 2.24
4160 4229 4.759693 TGCATTCTTAATGGTGAACTCGTT 59.240 37.500 2.11 0.00 39.31 3.85
4235 4307 8.506168 AGCTTATTTCTCATTTGATTCGGTTA 57.494 30.769 0.00 0.00 0.00 2.85
4245 4317 9.669353 CTCATTTGATTCGGTTATAAAGATTGG 57.331 33.333 0.00 0.00 0.00 3.16
4246 4318 9.402320 TCATTTGATTCGGTTATAAAGATTGGA 57.598 29.630 0.00 0.00 0.00 3.53
4247 4319 9.669353 CATTTGATTCGGTTATAAAGATTGGAG 57.331 33.333 0.00 0.00 0.00 3.86
4248 4320 9.627123 ATTTGATTCGGTTATAAAGATTGGAGA 57.373 29.630 0.00 0.00 0.00 3.71
4249 4321 9.456147 TTTGATTCGGTTATAAAGATTGGAGAA 57.544 29.630 0.00 0.00 0.00 2.87
4277 5711 1.511305 CTTTGGTCTCGAGCCGCTA 59.489 57.895 7.81 0.00 0.00 4.26
4286 5720 5.008712 TGGTCTCGAGCCGCTATATATATTG 59.991 44.000 7.81 0.00 0.00 1.90
4292 5726 5.627367 CGAGCCGCTATATATATTGAGAAGC 59.373 44.000 8.17 6.40 0.00 3.86
4388 5822 1.889829 ACGAGAGGGAGAGTCAAACAG 59.110 52.381 0.00 0.00 0.00 3.16
4391 5825 3.005897 CGAGAGGGAGAGTCAAACAGAAA 59.994 47.826 0.00 0.00 0.00 2.52
4396 5830 5.372373 AGGGAGAGTCAAACAGAAAAAGAG 58.628 41.667 0.00 0.00 0.00 2.85
4421 5855 9.896645 AGATAGATGAGTTTGAAACATACATGT 57.103 29.630 11.02 2.69 44.20 3.21
4423 5857 7.984422 AGATGAGTTTGAAACATACATGTCA 57.016 32.000 11.02 3.79 40.80 3.58
4424 5858 8.394971 AGATGAGTTTGAAACATACATGTCAA 57.605 30.769 11.02 0.00 40.80 3.18
4425 5859 8.292448 AGATGAGTTTGAAACATACATGTCAAC 58.708 33.333 11.02 2.67 40.80 3.18
4426 5860 7.566760 TGAGTTTGAAACATACATGTCAACT 57.433 32.000 11.02 0.15 40.80 3.16
4427 5861 8.669946 TGAGTTTGAAACATACATGTCAACTA 57.330 30.769 11.02 0.00 40.80 2.24
4428 5862 8.556194 TGAGTTTGAAACATACATGTCAACTAC 58.444 33.333 11.02 0.00 40.80 2.73
4429 5863 8.677148 AGTTTGAAACATACATGTCAACTACT 57.323 30.769 11.02 0.00 40.80 2.57
4430 5864 8.774586 AGTTTGAAACATACATGTCAACTACTC 58.225 33.333 11.02 0.00 40.80 2.59
4431 5865 7.667043 TTGAAACATACATGTCAACTACTCC 57.333 36.000 0.00 0.00 40.80 3.85
4432 5866 6.170506 TGAAACATACATGTCAACTACTCCC 58.829 40.000 0.00 0.00 40.80 4.30
4433 5867 4.386867 ACATACATGTCAACTACTCCCG 57.613 45.455 0.00 0.00 35.87 5.14
4434 5868 3.767673 ACATACATGTCAACTACTCCCGT 59.232 43.478 0.00 0.00 35.87 5.28
4435 5869 4.142227 ACATACATGTCAACTACTCCCGTC 60.142 45.833 0.00 0.00 35.87 4.79
4436 5870 2.244695 ACATGTCAACTACTCCCGTCA 58.755 47.619 0.00 0.00 0.00 4.35
4437 5871 2.832129 ACATGTCAACTACTCCCGTCAT 59.168 45.455 0.00 0.00 0.00 3.06
4438 5872 4.021229 ACATGTCAACTACTCCCGTCATA 58.979 43.478 0.00 0.00 0.00 2.15
4439 5873 4.464951 ACATGTCAACTACTCCCGTCATAA 59.535 41.667 0.00 0.00 0.00 1.90
4440 5874 4.713824 TGTCAACTACTCCCGTCATAAG 57.286 45.455 0.00 0.00 0.00 1.73
4441 5875 4.338012 TGTCAACTACTCCCGTCATAAGA 58.662 43.478 0.00 0.00 0.00 2.10
4442 5876 4.954202 TGTCAACTACTCCCGTCATAAGAT 59.046 41.667 0.00 0.00 0.00 2.40
4443 5877 5.163550 TGTCAACTACTCCCGTCATAAGATG 60.164 44.000 0.00 0.00 0.00 2.90
4451 5885 3.662247 CCGTCATAAGATGGGGACTAC 57.338 52.381 0.00 0.00 45.53 2.73
4452 5886 2.963101 CCGTCATAAGATGGGGACTACA 59.037 50.000 0.00 0.00 45.53 2.74
4453 5887 3.578716 CCGTCATAAGATGGGGACTACAT 59.421 47.826 0.00 0.00 45.53 2.29
4454 5888 4.322049 CCGTCATAAGATGGGGACTACATC 60.322 50.000 0.00 0.00 45.53 3.06
4466 5900 3.252974 GACTACATCTGTCCTTGGGTG 57.747 52.381 0.00 0.00 0.00 4.61
4467 5901 1.909302 ACTACATCTGTCCTTGGGTGG 59.091 52.381 0.00 0.00 0.00 4.61
4468 5902 1.909302 CTACATCTGTCCTTGGGTGGT 59.091 52.381 0.00 0.00 0.00 4.16
4469 5903 2.038863 ACATCTGTCCTTGGGTGGTA 57.961 50.000 0.00 0.00 0.00 3.25
4470 5904 2.344592 ACATCTGTCCTTGGGTGGTAA 58.655 47.619 0.00 0.00 0.00 2.85
4471 5905 2.039879 ACATCTGTCCTTGGGTGGTAAC 59.960 50.000 0.00 0.00 0.00 2.50
4472 5906 1.061546 TCTGTCCTTGGGTGGTAACC 58.938 55.000 0.00 0.00 46.81 2.85
4480 5914 2.188731 GGTGGTAACCCTAGCCGC 59.811 66.667 0.00 0.00 41.04 6.53
4481 5915 2.188731 GTGGTAACCCTAGCCGCC 59.811 66.667 0.00 0.00 0.00 6.13
4482 5916 3.085296 TGGTAACCCTAGCCGCCC 61.085 66.667 0.00 0.00 0.00 6.13
4483 5917 3.870190 GGTAACCCTAGCCGCCCC 61.870 72.222 0.00 0.00 0.00 5.80
4484 5918 2.767073 GTAACCCTAGCCGCCCCT 60.767 66.667 0.00 0.00 0.00 4.79
4485 5919 2.445274 TAACCCTAGCCGCCCCTC 60.445 66.667 0.00 0.00 0.00 4.30
4490 5924 4.548513 CTAGCCGCCCCTCCTCCT 62.549 72.222 0.00 0.00 0.00 3.69
4491 5925 4.541648 TAGCCGCCCCTCCTCCTC 62.542 72.222 0.00 0.00 0.00 3.71
4649 6083 2.747855 CCTCGGTTGCCCTGCTTC 60.748 66.667 0.00 0.00 0.00 3.86
4650 6084 2.348998 CTCGGTTGCCCTGCTTCT 59.651 61.111 0.00 0.00 0.00 2.85
4651 6085 2.032528 TCGGTTGCCCTGCTTCTG 59.967 61.111 0.00 0.00 0.00 3.02
4652 6086 3.741476 CGGTTGCCCTGCTTCTGC 61.741 66.667 0.00 0.00 40.20 4.26
4653 6087 3.741476 GGTTGCCCTGCTTCTGCG 61.741 66.667 0.00 0.00 43.34 5.18
4654 6088 2.980233 GTTGCCCTGCTTCTGCGT 60.980 61.111 0.00 0.00 43.34 5.24
4655 6089 2.979676 TTGCCCTGCTTCTGCGTG 60.980 61.111 0.00 0.00 43.34 5.34
4659 6093 4.020617 CCTGCTTCTGCGTGGGGA 62.021 66.667 0.00 0.00 43.34 4.81
4660 6094 2.032528 CTGCTTCTGCGTGGGGAA 59.967 61.111 0.00 0.00 43.34 3.97
4661 6095 2.281484 TGCTTCTGCGTGGGGAAC 60.281 61.111 0.00 0.00 43.34 3.62
4674 6108 4.657952 GGAACCCCGGATTTGGAG 57.342 61.111 0.73 0.00 0.00 3.86
4675 6109 1.753078 GGAACCCCGGATTTGGAGC 60.753 63.158 0.73 0.00 0.00 4.70
4676 6110 2.045340 AACCCCGGATTTGGAGCG 60.045 61.111 0.73 0.00 0.00 5.03
4677 6111 3.638592 AACCCCGGATTTGGAGCGG 62.639 63.158 0.73 0.00 0.00 5.52
4678 6112 4.109675 CCCCGGATTTGGAGCGGT 62.110 66.667 0.73 0.00 0.00 5.68
4679 6113 2.824041 CCCGGATTTGGAGCGGTG 60.824 66.667 0.73 0.00 0.00 4.94
4680 6114 2.267642 CCGGATTTGGAGCGGTGA 59.732 61.111 0.00 0.00 0.00 4.02
4681 6115 2.106683 CCGGATTTGGAGCGGTGAC 61.107 63.158 0.00 0.00 0.00 3.67
4682 6116 1.079127 CGGATTTGGAGCGGTGACT 60.079 57.895 0.00 0.00 0.00 3.41
4683 6117 0.673644 CGGATTTGGAGCGGTGACTT 60.674 55.000 0.00 0.00 0.00 3.01
4684 6118 1.087501 GGATTTGGAGCGGTGACTTC 58.912 55.000 0.00 0.00 0.00 3.01
4685 6119 1.610624 GGATTTGGAGCGGTGACTTCA 60.611 52.381 0.00 0.00 0.00 3.02
4686 6120 2.359900 GATTTGGAGCGGTGACTTCAT 58.640 47.619 0.00 0.00 0.00 2.57
4687 6121 2.270352 TTTGGAGCGGTGACTTCATT 57.730 45.000 0.00 0.00 0.00 2.57
4688 6122 1.522668 TTGGAGCGGTGACTTCATTG 58.477 50.000 0.00 0.00 0.00 2.82
4689 6123 0.684535 TGGAGCGGTGACTTCATTGA 59.315 50.000 0.00 0.00 0.00 2.57
4690 6124 1.079503 GGAGCGGTGACTTCATTGAC 58.920 55.000 0.00 0.00 0.00 3.18
4691 6125 1.608025 GGAGCGGTGACTTCATTGACA 60.608 52.381 0.00 0.00 0.00 3.58
4692 6126 2.143122 GAGCGGTGACTTCATTGACAA 58.857 47.619 0.00 0.00 0.00 3.18
4693 6127 2.146342 AGCGGTGACTTCATTGACAAG 58.854 47.619 0.00 0.00 0.00 3.16
4694 6128 1.197721 GCGGTGACTTCATTGACAAGG 59.802 52.381 0.00 0.00 0.00 3.61
4695 6129 1.197721 CGGTGACTTCATTGACAAGGC 59.802 52.381 0.00 0.00 0.00 4.35
4696 6130 2.229792 GGTGACTTCATTGACAAGGCA 58.770 47.619 0.00 0.00 36.48 4.75
4698 6132 1.872952 TGACTTCATTGACAAGGCACG 59.127 47.619 0.00 0.00 33.70 5.34
4699 6133 1.197721 GACTTCATTGACAAGGCACGG 59.802 52.381 0.00 0.00 0.00 4.94
4700 6134 0.109597 CTTCATTGACAAGGCACGGC 60.110 55.000 0.00 0.00 0.00 5.68
4728 6162 3.032609 CCGTGCGAGCGATGGATC 61.033 66.667 0.00 0.00 0.00 3.36
4729 6163 2.026734 CGTGCGAGCGATGGATCT 59.973 61.111 0.00 0.00 0.00 2.75
4730 6164 1.282875 CGTGCGAGCGATGGATCTA 59.717 57.895 0.00 0.00 0.00 1.98
4731 6165 0.727457 CGTGCGAGCGATGGATCTAG 60.727 60.000 0.00 0.00 0.00 2.43
4732 6166 0.312416 GTGCGAGCGATGGATCTAGT 59.688 55.000 0.00 0.00 0.00 2.57
4733 6167 0.312102 TGCGAGCGATGGATCTAGTG 59.688 55.000 0.00 0.00 0.00 2.74
4734 6168 0.312416 GCGAGCGATGGATCTAGTGT 59.688 55.000 0.00 0.00 0.00 3.55
4735 6169 1.664588 GCGAGCGATGGATCTAGTGTC 60.665 57.143 0.00 0.00 0.00 3.67
4736 6170 1.068885 CGAGCGATGGATCTAGTGTCC 60.069 57.143 9.20 9.20 36.26 4.02
4737 6171 1.271102 GAGCGATGGATCTAGTGTCCC 59.729 57.143 12.38 1.41 34.76 4.46
4738 6172 0.039074 GCGATGGATCTAGTGTCCCG 60.039 60.000 12.38 10.79 34.76 5.14
4739 6173 0.598562 CGATGGATCTAGTGTCCCGG 59.401 60.000 12.38 0.00 34.76 5.73
4740 6174 0.318762 GATGGATCTAGTGTCCCGGC 59.681 60.000 0.00 0.00 34.76 6.13
4741 6175 1.122019 ATGGATCTAGTGTCCCGGCC 61.122 60.000 0.00 0.00 34.76 6.13
4742 6176 2.728817 GATCTAGTGTCCCGGCCG 59.271 66.667 21.04 21.04 0.00 6.13
4743 6177 3.501458 GATCTAGTGTCCCGGCCGC 62.501 68.421 22.85 7.02 0.00 6.53
4769 6203 3.766691 CGGGATCCGGTGGTCGTT 61.767 66.667 11.10 0.00 44.15 3.85
4770 6204 2.125269 GGGATCCGGTGGTCGTTG 60.125 66.667 5.45 0.00 37.11 4.10
4771 6205 2.125269 GGATCCGGTGGTCGTTGG 60.125 66.667 0.00 0.00 37.11 3.77
4772 6206 2.818274 GATCCGGTGGTCGTTGGC 60.818 66.667 0.00 0.00 37.11 4.52
4773 6207 4.752879 ATCCGGTGGTCGTTGGCG 62.753 66.667 0.00 0.00 37.11 5.69
4800 6234 3.123620 GGCTTCTGCGGCAGTCAG 61.124 66.667 27.63 23.60 40.82 3.51
4801 6235 2.358003 GCTTCTGCGGCAGTCAGT 60.358 61.111 27.63 0.00 32.61 3.41
4802 6236 2.675056 GCTTCTGCGGCAGTCAGTG 61.675 63.158 27.63 15.33 32.61 3.66
4811 6245 4.476361 CAGTCAGTGCACGCGATA 57.524 55.556 15.93 0.00 0.00 2.92
4812 6246 2.963499 CAGTCAGTGCACGCGATAT 58.037 52.632 15.93 3.00 0.00 1.63
4813 6247 0.573987 CAGTCAGTGCACGCGATATG 59.426 55.000 15.93 11.16 0.00 1.78
4814 6248 0.528466 AGTCAGTGCACGCGATATGG 60.528 55.000 15.93 0.00 0.00 2.74
4815 6249 1.882625 TCAGTGCACGCGATATGGC 60.883 57.895 15.93 8.84 0.00 4.40
4824 6258 3.314331 CGATATGGCGCCTCCCCT 61.314 66.667 29.70 7.68 0.00 4.79
4825 6259 2.665603 GATATGGCGCCTCCCCTC 59.334 66.667 29.70 13.15 0.00 4.30
4826 6260 2.930562 ATATGGCGCCTCCCCTCC 60.931 66.667 29.70 0.00 0.00 4.30
4835 6269 3.330720 CTCCCCTCCGCCCTTGTT 61.331 66.667 0.00 0.00 0.00 2.83
4836 6270 3.327404 TCCCCTCCGCCCTTGTTC 61.327 66.667 0.00 0.00 0.00 3.18
4837 6271 4.778143 CCCCTCCGCCCTTGTTCG 62.778 72.222 0.00 0.00 0.00 3.95
4838 6272 4.778143 CCCTCCGCCCTTGTTCGG 62.778 72.222 0.00 0.00 46.52 4.30
4868 6302 4.473520 CCTCATCGGGCCGTGCTT 62.474 66.667 27.32 6.72 0.00 3.91
4869 6303 2.892425 CTCATCGGGCCGTGCTTC 60.892 66.667 27.32 0.00 0.00 3.86
4870 6304 4.467084 TCATCGGGCCGTGCTTCC 62.467 66.667 27.32 0.00 0.00 3.46
4871 6305 4.473520 CATCGGGCCGTGCTTCCT 62.474 66.667 27.32 0.08 0.00 3.36
4872 6306 4.162690 ATCGGGCCGTGCTTCCTC 62.163 66.667 27.32 0.00 0.00 3.71
4874 6308 4.394712 CGGGCCGTGCTTCCTCTT 62.395 66.667 19.97 0.00 0.00 2.85
4875 6309 2.747855 GGGCCGTGCTTCCTCTTG 60.748 66.667 0.00 0.00 0.00 3.02
4876 6310 2.747855 GGCCGTGCTTCCTCTTGG 60.748 66.667 0.00 0.00 0.00 3.61
4877 6311 2.032681 GCCGTGCTTCCTCTTGGT 59.967 61.111 0.00 0.00 34.23 3.67
4878 6312 2.035442 GCCGTGCTTCCTCTTGGTC 61.035 63.158 0.00 0.00 34.23 4.02
4879 6313 1.371183 CCGTGCTTCCTCTTGGTCA 59.629 57.895 0.00 0.00 34.23 4.02
4880 6314 0.951040 CCGTGCTTCCTCTTGGTCAC 60.951 60.000 0.00 0.00 34.23 3.67
4881 6315 1.284982 CGTGCTTCCTCTTGGTCACG 61.285 60.000 0.00 0.00 41.54 4.35
4882 6316 0.951040 GTGCTTCCTCTTGGTCACGG 60.951 60.000 0.00 0.00 34.23 4.94
4883 6317 1.376037 GCTTCCTCTTGGTCACGGG 60.376 63.158 0.00 0.00 34.23 5.28
4884 6318 2.058675 CTTCCTCTTGGTCACGGGT 58.941 57.895 0.00 0.00 34.23 5.28
4885 6319 0.396811 CTTCCTCTTGGTCACGGGTT 59.603 55.000 0.00 0.00 34.23 4.11
4886 6320 0.395312 TTCCTCTTGGTCACGGGTTC 59.605 55.000 0.00 0.00 34.23 3.62
4887 6321 0.471211 TCCTCTTGGTCACGGGTTCT 60.471 55.000 0.00 0.00 34.23 3.01
4888 6322 0.320771 CCTCTTGGTCACGGGTTCTG 60.321 60.000 0.00 0.00 0.00 3.02
4889 6323 0.393077 CTCTTGGTCACGGGTTCTGT 59.607 55.000 0.00 0.00 0.00 3.41
4890 6324 1.616865 CTCTTGGTCACGGGTTCTGTA 59.383 52.381 0.00 0.00 0.00 2.74
4891 6325 1.342174 TCTTGGTCACGGGTTCTGTAC 59.658 52.381 0.00 0.00 0.00 2.90
4892 6326 1.069513 CTTGGTCACGGGTTCTGTACA 59.930 52.381 0.00 0.00 0.00 2.90
4893 6327 0.677288 TGGTCACGGGTTCTGTACAG 59.323 55.000 17.17 17.17 0.00 2.74
4894 6328 0.037605 GGTCACGGGTTCTGTACAGG 60.038 60.000 22.48 8.66 0.00 4.00
4895 6329 0.963962 GTCACGGGTTCTGTACAGGA 59.036 55.000 22.48 11.97 0.00 3.86
4896 6330 1.067776 GTCACGGGTTCTGTACAGGAG 60.068 57.143 22.48 11.61 0.00 3.69
4897 6331 0.246635 CACGGGTTCTGTACAGGAGG 59.753 60.000 22.48 8.90 0.00 4.30
4898 6332 0.178941 ACGGGTTCTGTACAGGAGGT 60.179 55.000 22.48 9.53 0.00 3.85
4899 6333 0.246635 CGGGTTCTGTACAGGAGGTG 59.753 60.000 22.48 6.95 0.00 4.00
4900 6334 0.036294 GGGTTCTGTACAGGAGGTGC 60.036 60.000 22.48 1.93 0.00 5.01
4901 6335 0.977395 GGTTCTGTACAGGAGGTGCT 59.023 55.000 22.48 0.00 32.71 4.40
4902 6336 1.338200 GGTTCTGTACAGGAGGTGCTG 60.338 57.143 22.48 0.00 32.71 4.41
4903 6337 0.321671 TTCTGTACAGGAGGTGCTGC 59.678 55.000 22.48 0.00 32.43 5.25
4904 6338 0.542938 TCTGTACAGGAGGTGCTGCT 60.543 55.000 22.48 0.00 32.43 4.24
4905 6339 0.108424 CTGTACAGGAGGTGCTGCTC 60.108 60.000 15.49 0.00 32.71 4.26
4906 6340 1.153745 GTACAGGAGGTGCTGCTCG 60.154 63.158 0.00 0.00 27.15 5.03
4907 6341 1.606601 TACAGGAGGTGCTGCTCGT 60.607 57.895 0.00 0.00 27.15 4.18
4908 6342 1.877576 TACAGGAGGTGCTGCTCGTG 61.878 60.000 0.00 4.93 40.17 4.35
4909 6343 3.699894 AGGAGGTGCTGCTCGTGG 61.700 66.667 0.00 0.00 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.167662 TCTACAGCAGATTGTCACCGA 58.832 47.619 0.00 0.00 32.56 4.69
1 2 2.654749 TCTACAGCAGATTGTCACCG 57.345 50.000 0.00 0.00 32.56 4.94
2 3 6.051717 ACATATTCTACAGCAGATTGTCACC 58.948 40.000 0.00 0.00 31.77 4.02
4 5 7.809806 CGATACATATTCTACAGCAGATTGTCA 59.190 37.037 0.00 0.00 31.77 3.58
5 6 7.201393 GCGATACATATTCTACAGCAGATTGTC 60.201 40.741 0.00 0.00 31.77 3.18
6 7 6.587990 GCGATACATATTCTACAGCAGATTGT 59.412 38.462 0.00 0.00 31.77 2.71
7 8 6.810676 AGCGATACATATTCTACAGCAGATTG 59.189 38.462 0.00 0.00 31.77 2.67
8 9 6.810676 CAGCGATACATATTCTACAGCAGATT 59.189 38.462 0.00 0.00 31.77 2.40
9 10 6.151817 TCAGCGATACATATTCTACAGCAGAT 59.848 38.462 0.00 0.00 31.77 2.90
10 11 5.473504 TCAGCGATACATATTCTACAGCAGA 59.526 40.000 0.00 0.00 0.00 4.26
11 12 5.703876 TCAGCGATACATATTCTACAGCAG 58.296 41.667 0.00 0.00 0.00 4.24
12 13 5.705609 TCAGCGATACATATTCTACAGCA 57.294 39.130 0.00 0.00 0.00 4.41
13 14 5.920840 TGTTCAGCGATACATATTCTACAGC 59.079 40.000 0.00 0.00 0.00 4.40
14 15 6.088749 GCTGTTCAGCGATACATATTCTACAG 59.911 42.308 9.04 0.00 33.22 2.74
15 16 5.920840 GCTGTTCAGCGATACATATTCTACA 59.079 40.000 9.04 0.00 0.00 2.74
16 17 6.382821 GCTGTTCAGCGATACATATTCTAC 57.617 41.667 9.04 0.00 0.00 2.59
30 31 0.772926 CGATCGATACGCTGTTCAGC 59.227 55.000 10.26 13.97 0.00 4.26
31 32 2.384899 TCGATCGATACGCTGTTCAG 57.615 50.000 15.15 0.00 0.00 3.02
32 33 2.917363 GATCGATCGATACGCTGTTCA 58.083 47.619 29.45 0.00 34.60 3.18
90 91 1.200716 CTACAAGACGTAGCAACCGGA 59.799 52.381 9.46 0.00 41.24 5.14
91 92 1.625616 CTACAAGACGTAGCAACCGG 58.374 55.000 0.00 0.00 41.24 5.28
101 102 2.717530 CCTACGCTAAGCTACAAGACG 58.282 52.381 0.00 0.00 0.00 4.18
103 104 2.097036 TGCCTACGCTAAGCTACAAGA 58.903 47.619 0.00 0.00 35.36 3.02
119 120 1.408969 AAAACCCACAAATCGTGCCT 58.591 45.000 0.00 0.00 44.91 4.75
147 148 3.868661 GCTGCGGGAAAAAGAAAAGAAAA 59.131 39.130 0.00 0.00 0.00 2.29
412 434 6.212993 TGACCAATTTTCCAAATCCATGATCA 59.787 34.615 0.00 0.00 0.00 2.92
431 453 9.906660 GAGTAACATTGTTTAATTCATGACCAA 57.093 29.630 7.45 0.00 0.00 3.67
434 456 8.739972 AGGGAGTAACATTGTTTAATTCATGAC 58.260 33.333 7.45 0.00 0.00 3.06
447 469 2.434336 TGGATCGGAGGGAGTAACATTG 59.566 50.000 0.00 0.00 0.00 2.82
543 565 9.388506 CATCTAGATGTGTCCTAAACAGATTTT 57.611 33.333 22.42 0.00 41.66 1.82
544 566 8.954950 CATCTAGATGTGTCCTAAACAGATTT 57.045 34.615 22.42 0.00 41.66 2.17
587 609 6.365970 AACAGAGTGGACATCAGTTTAGAT 57.634 37.500 0.00 0.00 0.00 1.98
588 610 5.808366 AACAGAGTGGACATCAGTTTAGA 57.192 39.130 0.00 0.00 0.00 2.10
589 611 5.760253 ACAAACAGAGTGGACATCAGTTTAG 59.240 40.000 0.00 0.00 35.12 1.85
590 612 5.527214 CACAAACAGAGTGGACATCAGTTTA 59.473 40.000 0.00 0.00 35.12 2.01
591 613 4.336433 CACAAACAGAGTGGACATCAGTTT 59.664 41.667 0.00 0.00 37.00 2.66
592 614 3.879295 CACAAACAGAGTGGACATCAGTT 59.121 43.478 0.00 0.00 33.43 3.16
593 615 3.470709 CACAAACAGAGTGGACATCAGT 58.529 45.455 0.00 0.00 33.43 3.41
594 616 2.225019 GCACAAACAGAGTGGACATCAG 59.775 50.000 0.00 0.00 37.46 2.90
595 617 2.158769 AGCACAAACAGAGTGGACATCA 60.159 45.455 0.00 0.00 37.46 3.07
596 618 2.481952 GAGCACAAACAGAGTGGACATC 59.518 50.000 0.00 0.00 37.46 3.06
597 619 2.105477 AGAGCACAAACAGAGTGGACAT 59.895 45.455 0.00 0.00 37.46 3.06
598 620 1.486310 AGAGCACAAACAGAGTGGACA 59.514 47.619 0.00 0.00 37.46 4.02
599 621 2.246719 AGAGCACAAACAGAGTGGAC 57.753 50.000 0.00 0.00 37.46 4.02
600 622 4.623932 AATAGAGCACAAACAGAGTGGA 57.376 40.909 0.00 0.00 37.46 4.02
601 623 5.695851 AAAATAGAGCACAAACAGAGTGG 57.304 39.130 0.00 0.00 37.46 4.00
642 664 5.876612 AATGCAGCAACAAGAAACAAAAA 57.123 30.435 0.00 0.00 0.00 1.94
643 665 8.830201 ATATAATGCAGCAACAAGAAACAAAA 57.170 26.923 0.00 0.00 0.00 2.44
649 671 9.518906 CACAAATATATAATGCAGCAACAAGAA 57.481 29.630 0.00 0.00 0.00 2.52
650 672 8.136800 CCACAAATATATAATGCAGCAACAAGA 58.863 33.333 0.00 0.00 0.00 3.02
651 673 7.383029 CCCACAAATATATAATGCAGCAACAAG 59.617 37.037 0.00 0.00 0.00 3.16
652 674 7.069208 TCCCACAAATATATAATGCAGCAACAA 59.931 33.333 0.00 0.00 0.00 2.83
653 675 6.548993 TCCCACAAATATATAATGCAGCAACA 59.451 34.615 0.00 0.00 0.00 3.33
654 676 6.980593 TCCCACAAATATATAATGCAGCAAC 58.019 36.000 0.00 0.00 0.00 4.17
655 677 6.294675 GCTCCCACAAATATATAATGCAGCAA 60.295 38.462 0.00 0.00 0.00 3.91
656 678 5.183713 GCTCCCACAAATATATAATGCAGCA 59.816 40.000 0.00 0.00 0.00 4.41
657 679 5.416952 AGCTCCCACAAATATATAATGCAGC 59.583 40.000 0.00 0.00 0.00 5.25
658 680 7.458409 AAGCTCCCACAAATATATAATGCAG 57.542 36.000 0.00 0.00 0.00 4.41
659 681 8.382405 TCTAAGCTCCCACAAATATATAATGCA 58.618 33.333 0.00 0.00 0.00 3.96
660 682 8.792830 TCTAAGCTCCCACAAATATATAATGC 57.207 34.615 0.00 0.00 0.00 3.56
663 685 9.725019 CACATCTAAGCTCCCACAAATATATAA 57.275 33.333 0.00 0.00 0.00 0.98
664 686 9.100197 TCACATCTAAGCTCCCACAAATATATA 57.900 33.333 0.00 0.00 0.00 0.86
665 687 7.977818 TCACATCTAAGCTCCCACAAATATAT 58.022 34.615 0.00 0.00 0.00 0.86
666 688 7.373617 TCACATCTAAGCTCCCACAAATATA 57.626 36.000 0.00 0.00 0.00 0.86
667 689 6.252599 TCACATCTAAGCTCCCACAAATAT 57.747 37.500 0.00 0.00 0.00 1.28
668 690 5.692115 TCACATCTAAGCTCCCACAAATA 57.308 39.130 0.00 0.00 0.00 1.40
669 691 4.574674 TCACATCTAAGCTCCCACAAAT 57.425 40.909 0.00 0.00 0.00 2.32
670 692 4.574674 ATCACATCTAAGCTCCCACAAA 57.425 40.909 0.00 0.00 0.00 2.83
671 693 5.221722 GGATATCACATCTAAGCTCCCACAA 60.222 44.000 4.83 0.00 0.00 3.33
672 694 4.284490 GGATATCACATCTAAGCTCCCACA 59.716 45.833 4.83 0.00 0.00 4.17
673 695 4.530161 AGGATATCACATCTAAGCTCCCAC 59.470 45.833 4.83 0.00 0.00 4.61
674 696 4.756564 AGGATATCACATCTAAGCTCCCA 58.243 43.478 4.83 0.00 0.00 4.37
675 697 5.753721 AAGGATATCACATCTAAGCTCCC 57.246 43.478 4.83 0.00 0.00 4.30
676 698 9.561069 TTTTTAAGGATATCACATCTAAGCTCC 57.439 33.333 4.83 0.00 0.00 4.70
701 723 9.209175 GTTTGTCTAACTCACATCTAGATGTTT 57.791 33.333 31.39 24.94 40.45 2.83
702 724 8.589338 AGTTTGTCTAACTCACATCTAGATGTT 58.411 33.333 31.39 20.91 45.14 2.71
703 725 8.128322 AGTTTGTCTAACTCACATCTAGATGT 57.872 34.615 28.95 28.95 43.67 3.06
704 726 8.031864 ACAGTTTGTCTAACTCACATCTAGATG 58.968 37.037 27.63 27.63 45.29 2.90
705 727 8.128322 ACAGTTTGTCTAACTCACATCTAGAT 57.872 34.615 0.00 0.00 45.29 1.98
706 728 7.526142 ACAGTTTGTCTAACTCACATCTAGA 57.474 36.000 0.00 0.00 45.29 2.43
707 729 9.692749 TTAACAGTTTGTCTAACTCACATCTAG 57.307 33.333 0.00 0.00 45.29 2.43
709 731 8.958119 TTTAACAGTTTGTCTAACTCACATCT 57.042 30.769 0.00 0.00 45.29 2.90
710 732 9.997482 TTTTTAACAGTTTGTCTAACTCACATC 57.003 29.630 0.00 0.00 45.29 3.06
737 759 6.800072 TCAAGTTTTTGTAGGGGAAACATT 57.200 33.333 0.00 0.00 36.11 2.71
739 761 6.607004 TTTCAAGTTTTTGTAGGGGAAACA 57.393 33.333 0.00 0.00 36.11 2.83
740 762 7.388224 TGTTTTTCAAGTTTTTGTAGGGGAAAC 59.612 33.333 0.00 0.00 35.73 2.78
793 815 3.831883 CCAGCGCATATGGCAAGT 58.168 55.556 11.47 0.00 45.17 3.16
881 903 2.356913 GTTTGCGCCCGCCAAAAT 60.357 55.556 4.18 0.00 41.09 1.82
998 1020 2.094906 CCATCCGCGATAATCGTCCTTA 60.095 50.000 8.23 0.00 42.81 2.69
1320 1345 2.052104 GGGAAATGAACAGCGGGGG 61.052 63.158 0.00 0.00 0.00 5.40
1334 1360 1.003355 CGAGCAAAGCAGGAGGGAA 60.003 57.895 0.00 0.00 0.00 3.97
1474 1502 2.039084 ACCTGCACAAACCAAACCAAAA 59.961 40.909 0.00 0.00 0.00 2.44
1624 1652 2.926242 TTCCGGCGGGTCCTCTTT 60.926 61.111 27.98 0.00 33.83 2.52
2003 2031 1.367471 CTGAACCGGTGAGCAGACA 59.633 57.895 21.44 8.16 0.00 3.41
2050 2078 0.606401 GCCTTGCCAACTGAGCTACA 60.606 55.000 0.00 0.00 0.00 2.74
2107 2135 1.512734 GCATCAAACGCTCAAGCCG 60.513 57.895 0.00 0.00 37.91 5.52
2654 2710 1.180029 ATGGCAAGGACAAGCATGAC 58.820 50.000 0.00 0.00 0.00 3.06
2701 2757 7.041644 GCAAGTAAACCACAACAAGATACTGTA 60.042 37.037 0.00 0.00 0.00 2.74
2702 2758 6.238648 GCAAGTAAACCACAACAAGATACTGT 60.239 38.462 0.00 0.00 0.00 3.55
2703 2759 6.017109 AGCAAGTAAACCACAACAAGATACTG 60.017 38.462 0.00 0.00 0.00 2.74
2704 2760 6.062095 AGCAAGTAAACCACAACAAGATACT 58.938 36.000 0.00 0.00 0.00 2.12
2705 2761 6.313744 AGCAAGTAAACCACAACAAGATAC 57.686 37.500 0.00 0.00 0.00 2.24
2743 2799 0.179059 TGGCGTCAAGAACAGCAAGA 60.179 50.000 0.00 0.00 31.69 3.02
2883 2939 0.528470 TACGGTCGCATCACATCACA 59.472 50.000 0.00 0.00 0.00 3.58
2884 2940 1.787155 GATACGGTCGCATCACATCAC 59.213 52.381 0.00 0.00 0.00 3.06
3031 3089 3.771160 ATGTCTCCGTCGGTGGGC 61.771 66.667 11.88 7.85 0.00 5.36
3033 3091 2.509336 GCATGTCTCCGTCGGTGG 60.509 66.667 11.88 5.94 0.00 4.61
3054 3116 2.253154 CACCACGCTGCACACATG 59.747 61.111 0.00 0.00 0.00 3.21
3055 3117 2.979676 CCACCACGCTGCACACAT 60.980 61.111 0.00 0.00 0.00 3.21
3650 3712 3.718210 GACCATGACGGAGGCGGAC 62.718 68.421 0.00 0.00 38.63 4.79
3771 3833 2.589338 TATCGATCCGACGACGATTG 57.411 50.000 21.53 10.84 44.84 2.67
3776 3838 2.225963 AGGACAATATCGATCCGACGAC 59.774 50.000 0.00 0.00 44.84 4.34
3793 3855 1.140375 CCAGGCGTACGGTTAGGAC 59.860 63.158 18.39 0.00 0.00 3.85
3997 4065 3.149981 TGATGTCTCGCTAATCGGATCT 58.850 45.455 0.00 0.00 39.05 2.75
4090 4158 2.505405 GTTCAGTGGGAAAGGGAAGAC 58.495 52.381 0.00 0.00 37.23 3.01
4160 4229 9.337396 GGGATCATTATACTTGTGTCAATGTTA 57.663 33.333 0.00 0.00 33.77 2.41
4196 4266 8.812972 TGAGAAATAAGCTACTTCTACAAAGGA 58.187 33.333 5.18 0.00 29.59 3.36
4235 4307 5.654209 GGGTTCAAGCTTCTCCAATCTTTAT 59.346 40.000 0.00 0.00 0.00 1.40
4243 4315 2.586425 CAAAGGGTTCAAGCTTCTCCA 58.414 47.619 0.00 0.00 0.00 3.86
4277 5711 7.468141 TCCACGACAGCTTCTCAATATATAT 57.532 36.000 0.00 0.00 0.00 0.86
4286 5720 3.232213 TGTAATCCACGACAGCTTCTC 57.768 47.619 0.00 0.00 0.00 2.87
4292 5726 4.320202 CCCAAAACTTGTAATCCACGACAG 60.320 45.833 0.00 0.00 0.00 3.51
4358 5792 4.399934 ACTCTCCCTCTCGTTGTAATCTTC 59.600 45.833 0.00 0.00 0.00 2.87
4430 5864 1.424638 AGTCCCCATCTTATGACGGG 58.575 55.000 2.79 2.79 44.85 5.28
4431 5865 2.963101 TGTAGTCCCCATCTTATGACGG 59.037 50.000 0.00 0.00 33.04 4.79
4432 5866 4.524714 AGATGTAGTCCCCATCTTATGACG 59.475 45.833 0.00 0.00 45.12 4.35
4433 5867 5.305644 ACAGATGTAGTCCCCATCTTATGAC 59.694 44.000 0.33 0.00 45.12 3.06
4434 5868 5.467738 ACAGATGTAGTCCCCATCTTATGA 58.532 41.667 0.33 0.00 45.12 2.15
4435 5869 5.279708 GGACAGATGTAGTCCCCATCTTATG 60.280 48.000 0.93 0.00 45.12 1.90
4436 5870 4.841246 GGACAGATGTAGTCCCCATCTTAT 59.159 45.833 0.93 0.00 45.12 1.73
4437 5871 4.223953 GGACAGATGTAGTCCCCATCTTA 58.776 47.826 0.93 0.00 45.12 2.10
4438 5872 3.041946 GGACAGATGTAGTCCCCATCTT 58.958 50.000 0.93 0.00 45.12 2.40
4446 5880 2.093447 CCACCCAAGGACAGATGTAGTC 60.093 54.545 0.00 0.00 35.29 2.59
4447 5881 1.909302 CCACCCAAGGACAGATGTAGT 59.091 52.381 0.00 0.00 0.00 2.73
4448 5882 1.909302 ACCACCCAAGGACAGATGTAG 59.091 52.381 0.00 0.00 0.00 2.74
4449 5883 2.038863 ACCACCCAAGGACAGATGTA 57.961 50.000 0.00 0.00 0.00 2.29
4450 5884 2.038863 TACCACCCAAGGACAGATGT 57.961 50.000 0.00 0.00 0.00 3.06
4451 5885 2.618045 GGTTACCACCCAAGGACAGATG 60.618 54.545 0.00 0.00 37.03 2.90
4452 5886 1.633945 GGTTACCACCCAAGGACAGAT 59.366 52.381 0.00 0.00 37.03 2.90
4453 5887 1.061546 GGTTACCACCCAAGGACAGA 58.938 55.000 0.00 0.00 37.03 3.41
4454 5888 3.644861 GGTTACCACCCAAGGACAG 57.355 57.895 0.00 0.00 37.03 3.51
4463 5897 2.188731 GCGGCTAGGGTTACCACC 59.811 66.667 2.98 0.00 43.37 4.61
4464 5898 2.188731 GGCGGCTAGGGTTACCAC 59.811 66.667 2.98 0.00 40.13 4.16
4465 5899 3.085296 GGGCGGCTAGGGTTACCA 61.085 66.667 9.56 0.00 40.13 3.25
4466 5900 3.870190 GGGGCGGCTAGGGTTACC 61.870 72.222 9.56 0.00 0.00 2.85
4467 5901 2.767073 AGGGGCGGCTAGGGTTAC 60.767 66.667 9.56 0.00 0.00 2.50
4468 5902 2.445274 GAGGGGCGGCTAGGGTTA 60.445 66.667 9.56 0.00 0.00 2.85
4473 5907 4.548513 AGGAGGAGGGGCGGCTAG 62.549 72.222 9.56 0.00 0.00 3.42
4474 5908 4.541648 GAGGAGGAGGGGCGGCTA 62.542 72.222 9.56 0.00 0.00 3.93
4637 6071 2.980233 ACGCAGAAGCAGGGCAAC 60.980 61.111 0.00 0.00 42.27 4.17
4638 6072 2.979676 CACGCAGAAGCAGGGCAA 60.980 61.111 0.00 0.00 42.27 4.52
4642 6076 3.551496 TTCCCCACGCAGAAGCAGG 62.551 63.158 0.00 0.00 42.27 4.85
4643 6077 2.032528 TTCCCCACGCAGAAGCAG 59.967 61.111 0.00 0.00 42.27 4.24
4644 6078 2.281484 GTTCCCCACGCAGAAGCA 60.281 61.111 0.00 0.00 42.27 3.91
4645 6079 3.056328 GGTTCCCCACGCAGAAGC 61.056 66.667 0.00 0.00 33.81 3.86
4646 6080 2.359975 GGGTTCCCCACGCAGAAG 60.360 66.667 0.00 0.00 44.65 2.85
4655 6089 2.043349 CCAAATCCGGGGTTCCCC 60.043 66.667 16.52 16.52 41.57 4.81
4656 6090 1.076995 CTCCAAATCCGGGGTTCCC 60.077 63.158 0.00 0.00 41.09 3.97
4657 6091 1.753078 GCTCCAAATCCGGGGTTCC 60.753 63.158 0.00 0.00 0.00 3.62
4658 6092 2.112815 CGCTCCAAATCCGGGGTTC 61.113 63.158 0.00 0.00 0.00 3.62
4659 6093 2.045340 CGCTCCAAATCCGGGGTT 60.045 61.111 0.00 0.00 0.00 4.11
4660 6094 4.109675 CCGCTCCAAATCCGGGGT 62.110 66.667 0.00 0.00 38.42 4.95
4661 6095 4.109675 ACCGCTCCAAATCCGGGG 62.110 66.667 0.00 0.00 45.93 5.73
4662 6096 2.824041 CACCGCTCCAAATCCGGG 60.824 66.667 0.00 0.00 45.93 5.73
4663 6097 2.106683 GTCACCGCTCCAAATCCGG 61.107 63.158 0.00 0.00 46.97 5.14
4664 6098 0.673644 AAGTCACCGCTCCAAATCCG 60.674 55.000 0.00 0.00 0.00 4.18
4665 6099 1.087501 GAAGTCACCGCTCCAAATCC 58.912 55.000 0.00 0.00 0.00 3.01
4666 6100 1.808411 TGAAGTCACCGCTCCAAATC 58.192 50.000 0.00 0.00 0.00 2.17
4667 6101 2.489329 CAATGAAGTCACCGCTCCAAAT 59.511 45.455 0.00 0.00 0.00 2.32
4668 6102 1.879380 CAATGAAGTCACCGCTCCAAA 59.121 47.619 0.00 0.00 0.00 3.28
4669 6103 1.071542 TCAATGAAGTCACCGCTCCAA 59.928 47.619 0.00 0.00 0.00 3.53
4670 6104 0.684535 TCAATGAAGTCACCGCTCCA 59.315 50.000 0.00 0.00 0.00 3.86
4671 6105 1.079503 GTCAATGAAGTCACCGCTCC 58.920 55.000 0.00 0.00 0.00 4.70
4672 6106 1.795768 TGTCAATGAAGTCACCGCTC 58.204 50.000 0.00 0.00 0.00 5.03
4673 6107 2.146342 CTTGTCAATGAAGTCACCGCT 58.854 47.619 0.00 0.00 0.00 5.52
4674 6108 1.197721 CCTTGTCAATGAAGTCACCGC 59.802 52.381 0.00 0.00 0.00 5.68
4675 6109 1.197721 GCCTTGTCAATGAAGTCACCG 59.802 52.381 0.00 0.00 0.00 4.94
4676 6110 2.030805 GTGCCTTGTCAATGAAGTCACC 60.031 50.000 0.00 0.00 0.00 4.02
4677 6111 2.349817 CGTGCCTTGTCAATGAAGTCAC 60.350 50.000 0.00 0.00 0.00 3.67
4678 6112 1.872952 CGTGCCTTGTCAATGAAGTCA 59.127 47.619 0.00 0.00 0.00 3.41
4679 6113 1.197721 CCGTGCCTTGTCAATGAAGTC 59.802 52.381 0.00 0.00 0.00 3.01
4680 6114 1.238439 CCGTGCCTTGTCAATGAAGT 58.762 50.000 0.00 0.00 0.00 3.01
4681 6115 0.109597 GCCGTGCCTTGTCAATGAAG 60.110 55.000 0.00 0.00 0.00 3.02
4682 6116 1.523154 GGCCGTGCCTTGTCAATGAA 61.523 55.000 7.58 0.00 46.69 2.57
4683 6117 1.971167 GGCCGTGCCTTGTCAATGA 60.971 57.895 7.58 0.00 46.69 2.57
4684 6118 2.568090 GGCCGTGCCTTGTCAATG 59.432 61.111 7.58 0.00 46.69 2.82
4711 6145 2.130073 TAGATCCATCGCTCGCACGG 62.130 60.000 0.00 0.00 0.00 4.94
4712 6146 0.727457 CTAGATCCATCGCTCGCACG 60.727 60.000 0.00 0.00 0.00 5.34
4713 6147 0.312416 ACTAGATCCATCGCTCGCAC 59.688 55.000 0.00 0.00 0.00 5.34
4714 6148 0.312102 CACTAGATCCATCGCTCGCA 59.688 55.000 0.00 0.00 0.00 5.10
4715 6149 0.312416 ACACTAGATCCATCGCTCGC 59.688 55.000 0.00 0.00 0.00 5.03
4716 6150 1.068885 GGACACTAGATCCATCGCTCG 60.069 57.143 11.52 0.00 36.15 5.03
4717 6151 1.271102 GGGACACTAGATCCATCGCTC 59.729 57.143 16.42 0.00 38.06 5.03
4718 6152 1.333177 GGGACACTAGATCCATCGCT 58.667 55.000 16.42 0.00 38.06 4.93
4719 6153 0.039074 CGGGACACTAGATCCATCGC 60.039 60.000 16.42 5.66 38.06 4.58
4720 6154 0.598562 CCGGGACACTAGATCCATCG 59.401 60.000 16.42 12.16 38.06 3.84
4721 6155 0.318762 GCCGGGACACTAGATCCATC 59.681 60.000 16.42 3.25 38.06 3.51
4722 6156 1.122019 GGCCGGGACACTAGATCCAT 61.122 60.000 16.42 0.00 38.06 3.41
4723 6157 1.760875 GGCCGGGACACTAGATCCA 60.761 63.158 16.42 0.00 38.06 3.41
4724 6158 2.857744 CGGCCGGGACACTAGATCC 61.858 68.421 20.10 2.75 35.28 3.36
4725 6159 2.728817 CGGCCGGGACACTAGATC 59.271 66.667 20.10 0.00 0.00 2.75
4726 6160 3.537874 GCGGCCGGGACACTAGAT 61.538 66.667 29.38 0.00 0.00 1.98
4753 6187 2.125269 CAACGACCACCGGATCCC 60.125 66.667 9.46 0.00 43.93 3.85
4754 6188 2.125269 CCAACGACCACCGGATCC 60.125 66.667 9.46 0.00 43.93 3.36
4755 6189 2.818274 GCCAACGACCACCGGATC 60.818 66.667 9.46 1.08 43.93 3.36
4756 6190 4.752879 CGCCAACGACCACCGGAT 62.753 66.667 9.46 0.00 43.93 4.18
4783 6217 3.123620 CTGACTGCCGCAGAAGCC 61.124 66.667 27.12 12.43 37.52 4.35
4784 6218 2.358003 ACTGACTGCCGCAGAAGC 60.358 61.111 27.12 14.99 36.86 3.86
4785 6219 2.675056 GCACTGACTGCCGCAGAAG 61.675 63.158 27.12 22.68 40.42 2.85
4786 6220 2.666190 GCACTGACTGCCGCAGAA 60.666 61.111 27.12 13.09 40.42 3.02
4787 6221 3.927548 TGCACTGACTGCCGCAGA 61.928 61.111 27.12 4.41 46.51 4.26
4788 6222 3.720193 GTGCACTGACTGCCGCAG 61.720 66.667 19.08 19.08 46.51 5.18
4794 6228 0.573987 CATATCGCGTGCACTGACTG 59.426 55.000 16.19 9.91 0.00 3.51
4795 6229 0.528466 CCATATCGCGTGCACTGACT 60.528 55.000 16.19 5.87 0.00 3.41
4796 6230 1.927210 CCATATCGCGTGCACTGAC 59.073 57.895 16.19 3.22 0.00 3.51
4797 6231 1.882625 GCCATATCGCGTGCACTGA 60.883 57.895 16.19 13.04 0.00 3.41
4798 6232 2.628106 GCCATATCGCGTGCACTG 59.372 61.111 16.19 9.73 0.00 3.66
4807 6241 3.302347 GAGGGGAGGCGCCATATCG 62.302 68.421 31.54 0.00 39.05 2.92
4808 6242 2.665603 GAGGGGAGGCGCCATATC 59.334 66.667 31.54 17.95 39.05 1.63
4809 6243 2.930562 GGAGGGGAGGCGCCATAT 60.931 66.667 31.54 8.11 39.05 1.78
4818 6252 3.330720 AACAAGGGCGGAGGGGAG 61.331 66.667 0.00 0.00 0.00 4.30
4819 6253 3.327404 GAACAAGGGCGGAGGGGA 61.327 66.667 0.00 0.00 0.00 4.81
4820 6254 4.778143 CGAACAAGGGCGGAGGGG 62.778 72.222 0.00 0.00 0.00 4.79
4851 6285 4.473520 AAGCACGGCCCGATGAGG 62.474 66.667 11.71 0.00 40.63 3.86
4852 6286 2.892425 GAAGCACGGCCCGATGAG 60.892 66.667 11.71 0.00 0.00 2.90
4853 6287 4.467084 GGAAGCACGGCCCGATGA 62.467 66.667 11.71 0.00 0.00 2.92
4854 6288 4.473520 AGGAAGCACGGCCCGATG 62.474 66.667 11.71 5.67 0.00 3.84
4855 6289 4.162690 GAGGAAGCACGGCCCGAT 62.163 66.667 11.71 0.00 0.00 4.18
4857 6291 4.394712 AAGAGGAAGCACGGCCCG 62.395 66.667 0.00 0.00 0.00 6.13
4858 6292 2.747855 CAAGAGGAAGCACGGCCC 60.748 66.667 0.00 0.00 0.00 5.80
4859 6293 2.747855 CCAAGAGGAAGCACGGCC 60.748 66.667 0.00 0.00 36.89 6.13
4860 6294 2.032681 ACCAAGAGGAAGCACGGC 59.967 61.111 0.00 0.00 38.69 5.68
4861 6295 0.951040 GTGACCAAGAGGAAGCACGG 60.951 60.000 0.00 0.00 38.69 4.94
4862 6296 1.284982 CGTGACCAAGAGGAAGCACG 61.285 60.000 0.00 0.00 44.58 5.34
4863 6297 0.951040 CCGTGACCAAGAGGAAGCAC 60.951 60.000 0.00 0.00 38.69 4.40
4864 6298 1.371183 CCGTGACCAAGAGGAAGCA 59.629 57.895 0.00 0.00 38.69 3.91
4865 6299 1.376037 CCCGTGACCAAGAGGAAGC 60.376 63.158 0.00 0.00 38.69 3.86
4866 6300 0.396811 AACCCGTGACCAAGAGGAAG 59.603 55.000 0.00 0.00 38.69 3.46
4867 6301 0.395312 GAACCCGTGACCAAGAGGAA 59.605 55.000 0.00 0.00 38.69 3.36
4868 6302 0.471211 AGAACCCGTGACCAAGAGGA 60.471 55.000 0.00 0.00 38.69 3.71
4869 6303 0.320771 CAGAACCCGTGACCAAGAGG 60.321 60.000 0.00 0.00 42.21 3.69
4870 6304 0.393077 ACAGAACCCGTGACCAAGAG 59.607 55.000 0.00 0.00 0.00 2.85
4871 6305 1.342174 GTACAGAACCCGTGACCAAGA 59.658 52.381 0.00 0.00 0.00 3.02
4872 6306 1.069513 TGTACAGAACCCGTGACCAAG 59.930 52.381 0.00 0.00 0.00 3.61
4873 6307 1.069513 CTGTACAGAACCCGTGACCAA 59.930 52.381 18.45 0.00 0.00 3.67
4874 6308 0.677288 CTGTACAGAACCCGTGACCA 59.323 55.000 18.45 0.00 0.00 4.02
4875 6309 0.037605 CCTGTACAGAACCCGTGACC 60.038 60.000 24.68 0.00 0.00 4.02
4876 6310 0.963962 TCCTGTACAGAACCCGTGAC 59.036 55.000 24.68 0.00 0.00 3.67
4877 6311 1.254026 CTCCTGTACAGAACCCGTGA 58.746 55.000 24.68 9.72 0.00 4.35
4878 6312 0.246635 CCTCCTGTACAGAACCCGTG 59.753 60.000 24.68 5.59 0.00 4.94
4879 6313 0.178941 ACCTCCTGTACAGAACCCGT 60.179 55.000 24.68 9.43 0.00 5.28
4880 6314 0.246635 CACCTCCTGTACAGAACCCG 59.753 60.000 24.68 7.09 0.00 5.28
4881 6315 0.036294 GCACCTCCTGTACAGAACCC 60.036 60.000 24.68 3.74 0.00 4.11
4882 6316 0.977395 AGCACCTCCTGTACAGAACC 59.023 55.000 24.68 6.19 0.00 3.62
4883 6317 1.941668 GCAGCACCTCCTGTACAGAAC 60.942 57.143 24.68 6.55 35.28 3.01
4884 6318 0.321671 GCAGCACCTCCTGTACAGAA 59.678 55.000 24.68 2.15 35.28 3.02
4885 6319 0.542938 AGCAGCACCTCCTGTACAGA 60.543 55.000 24.68 9.38 35.28 3.41
4886 6320 0.108424 GAGCAGCACCTCCTGTACAG 60.108 60.000 16.34 16.34 35.28 2.74
4887 6321 1.877576 CGAGCAGCACCTCCTGTACA 61.878 60.000 0.00 0.00 35.28 2.90
4888 6322 1.153745 CGAGCAGCACCTCCTGTAC 60.154 63.158 0.00 0.00 35.28 2.90
4889 6323 1.606601 ACGAGCAGCACCTCCTGTA 60.607 57.895 0.00 0.00 35.28 2.74
4890 6324 2.919856 ACGAGCAGCACCTCCTGT 60.920 61.111 0.00 0.00 35.28 4.00
4891 6325 2.433838 CACGAGCAGCACCTCCTG 60.434 66.667 0.00 0.00 35.93 3.86
4892 6326 3.699894 CCACGAGCAGCACCTCCT 61.700 66.667 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.