Multiple sequence alignment - TraesCS2D01G518600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G518600 chr2D 100.000 2630 0 0 1 2630 608744741 608747370 0.000000e+00 4857
1 TraesCS2D01G518600 chr2D 99.424 521 3 0 2110 2630 2354147 2354667 0.000000e+00 946
2 TraesCS2D01G518600 chr2B 91.554 1930 88 32 101 2004 742453573 742455453 0.000000e+00 2591
3 TraesCS2D01G518600 chr2A 93.278 1086 43 16 763 1830 740346440 740347513 0.000000e+00 1574
4 TraesCS2D01G518600 chr2A 85.137 693 51 27 1 686 740345748 740346395 0.000000e+00 662
5 TraesCS2D01G518600 chr2A 92.361 288 13 5 1829 2115 740347620 740347899 4.080000e-108 401
6 TraesCS2D01G518600 chr2A 93.000 100 4 1 1929 2025 740347777 740347876 2.730000e-30 143
7 TraesCS2D01G518600 chr2A 89.815 108 6 3 1983 2088 740347704 740347808 1.640000e-27 134
8 TraesCS2D01G518600 chr6A 100.000 515 0 0 2116 2630 440257306 440256792 0.000000e+00 952
9 TraesCS2D01G518600 chr6D 100.000 512 0 0 2119 2630 334239673 334240184 0.000000e+00 946
10 TraesCS2D01G518600 chr5A 99.614 518 2 0 2113 2630 423743741 423744258 0.000000e+00 946
11 TraesCS2D01G518600 chr6B 100.000 511 0 0 2120 2630 696415844 696415334 0.000000e+00 944
12 TraesCS2D01G518600 chr4A 100.000 493 0 0 2138 2630 351578090 351577598 0.000000e+00 911
13 TraesCS2D01G518600 chr4A 94.607 445 22 2 2117 2559 630042814 630043258 0.000000e+00 688
14 TraesCS2D01G518600 chr5B 91.980 399 24 4 2117 2507 680235241 680234843 1.060000e-153 553
15 TraesCS2D01G518600 chr5B 82.353 136 16 5 2115 2248 609688856 609688727 7.690000e-21 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G518600 chr2D 608744741 608747370 2629 False 4857.0 4857 100.0000 1 2630 1 chr2D.!!$F2 2629
1 TraesCS2D01G518600 chr2D 2354147 2354667 520 False 946.0 946 99.4240 2110 2630 1 chr2D.!!$F1 520
2 TraesCS2D01G518600 chr2B 742453573 742455453 1880 False 2591.0 2591 91.5540 101 2004 1 chr2B.!!$F1 1903
3 TraesCS2D01G518600 chr2A 740345748 740347899 2151 False 582.8 1574 90.7182 1 2115 5 chr2A.!!$F1 2114
4 TraesCS2D01G518600 chr6A 440256792 440257306 514 True 952.0 952 100.0000 2116 2630 1 chr6A.!!$R1 514
5 TraesCS2D01G518600 chr6D 334239673 334240184 511 False 946.0 946 100.0000 2119 2630 1 chr6D.!!$F1 511
6 TraesCS2D01G518600 chr5A 423743741 423744258 517 False 946.0 946 99.6140 2113 2630 1 chr5A.!!$F1 517
7 TraesCS2D01G518600 chr6B 696415334 696415844 510 True 944.0 944 100.0000 2120 2630 1 chr6B.!!$R1 510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
541 559 0.027194 TTCGTACGCGTGCTAGCTAG 59.973 55.0 24.59 16.84 39.49 3.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1853 2017 0.79264 GACTTGCACGAGTGGATGTG 59.207 55.0 17.9 6.28 38.88 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.090729 CGTACGCTTGATTACTGACGTTA 58.909 43.478 0.52 0.00 35.15 3.18
34 35 5.534407 TGATTACTGACGTTAACAGAGCAA 58.466 37.500 9.51 1.97 38.55 3.91
45 50 9.298774 GACGTTAACAGAGCAAGTATAGTAATT 57.701 33.333 6.39 0.00 0.00 1.40
88 93 7.815549 TGTTGTATTCTTTCTTACATACGCAGA 59.184 33.333 0.00 0.00 0.00 4.26
91 96 7.979537 TGTATTCTTTCTTACATACGCAGACAT 59.020 33.333 0.00 0.00 0.00 3.06
92 97 6.647212 TTCTTTCTTACATACGCAGACATG 57.353 37.500 0.00 0.00 0.00 3.21
93 98 5.961272 TCTTTCTTACATACGCAGACATGA 58.039 37.500 0.00 0.00 0.00 3.07
95 100 6.310467 TCTTTCTTACATACGCAGACATGAAC 59.690 38.462 0.00 0.00 0.00 3.18
96 101 5.066968 TCTTACATACGCAGACATGAACA 57.933 39.130 0.00 0.00 0.00 3.18
98 103 2.002586 ACATACGCAGACATGAACAGC 58.997 47.619 0.00 0.78 0.00 4.40
99 104 1.328680 CATACGCAGACATGAACAGCC 59.671 52.381 0.00 0.00 0.00 4.85
145 150 1.818642 ACGAAGTACTACGAGCAGGT 58.181 50.000 0.00 0.00 41.94 4.00
146 151 2.977914 ACGAAGTACTACGAGCAGGTA 58.022 47.619 0.00 0.00 41.94 3.08
147 152 2.675348 ACGAAGTACTACGAGCAGGTAC 59.325 50.000 0.00 0.00 41.94 3.34
232 237 2.658064 GCTCTGGCTCAGGCTCAGT 61.658 63.158 0.00 0.00 37.71 3.41
535 553 0.179145 ATAGCTTTCGTACGCGTGCT 60.179 50.000 24.59 22.42 40.57 4.40
536 554 0.447406 TAGCTTTCGTACGCGTGCTA 59.553 50.000 24.59 21.30 39.32 3.49
537 555 0.797249 AGCTTTCGTACGCGTGCTAG 60.797 55.000 24.59 17.74 37.96 3.42
538 556 1.624323 CTTTCGTACGCGTGCTAGC 59.376 57.895 24.59 8.10 39.49 3.42
539 557 0.797249 CTTTCGTACGCGTGCTAGCT 60.797 55.000 24.59 0.00 39.49 3.32
540 558 0.447406 TTTCGTACGCGTGCTAGCTA 59.553 50.000 24.59 0.00 39.49 3.32
541 559 0.027194 TTCGTACGCGTGCTAGCTAG 59.973 55.000 24.59 16.84 39.49 3.42
542 560 2.370824 TCGTACGCGTGCTAGCTAGC 62.371 60.000 34.20 34.20 42.31 3.42
585 604 0.960364 TGGACCAGGCGAAAAGATGC 60.960 55.000 0.00 0.00 0.00 3.91
625 644 1.226379 GCGTGTACATGCATGTGGC 60.226 57.895 36.72 28.49 41.89 5.01
626 645 1.429021 CGTGTACATGCATGTGGCC 59.571 57.895 36.72 24.94 43.89 5.36
630 649 3.342668 TACATGCATGTGGCCGGCT 62.343 57.895 36.72 14.18 43.89 5.52
635 654 2.903855 CATGTGGCCGGCTGGATC 60.904 66.667 28.56 9.87 37.49 3.36
636 655 4.195334 ATGTGGCCGGCTGGATCC 62.195 66.667 28.56 8.74 37.49 3.36
660 679 0.179009 CGGATGGATGGATGGCAAGT 60.179 55.000 0.00 0.00 0.00 3.16
662 681 1.133699 GGATGGATGGATGGCAAGTCA 60.134 52.381 0.00 0.00 0.00 3.41
663 682 2.490351 GGATGGATGGATGGCAAGTCAT 60.490 50.000 0.00 0.00 0.00 3.06
686 706 2.374995 ATCGTCGTCGTCGTCGTGA 61.375 57.895 18.44 10.84 45.27 4.35
687 707 2.539972 ATCGTCGTCGTCGTCGTGAC 62.540 60.000 18.44 15.47 45.27 3.67
703 723 3.048942 GTGACATCTACCACGTACTCG 57.951 52.381 0.00 0.00 43.34 4.18
705 725 2.674852 TGACATCTACCACGTACTCGAC 59.325 50.000 0.00 0.00 40.62 4.20
706 726 2.012673 ACATCTACCACGTACTCGACC 58.987 52.381 0.00 0.00 40.62 4.79
707 727 2.011947 CATCTACCACGTACTCGACCA 58.988 52.381 0.00 0.00 40.62 4.02
708 728 2.408271 TCTACCACGTACTCGACCAT 57.592 50.000 0.00 0.00 40.62 3.55
747 782 1.076332 ACGCACGGCAATAAAGAGAC 58.924 50.000 0.00 0.00 0.00 3.36
799 838 2.824341 GAGAAAAGACCCTCGTCCTACA 59.176 50.000 0.00 0.00 40.12 2.74
890 932 1.907739 CGAGCCCTCTTCCATTCCA 59.092 57.895 0.00 0.00 0.00 3.53
943 985 4.394712 CTCGCCTTTCCTGCCGGT 62.395 66.667 1.90 0.00 0.00 5.28
970 1012 3.551250 CGCTTCCTCTTTAGCTAGGTAGC 60.551 52.174 17.57 17.57 46.89 3.58
1329 1371 2.931105 TACCACCACGGCCACCAT 60.931 61.111 2.24 0.00 39.03 3.55
1527 1575 1.153549 GGCCTTCTACCTGCACTCG 60.154 63.158 0.00 0.00 0.00 4.18
1634 1682 0.033011 TCCTCCTTCGCCTAGCTCTT 60.033 55.000 0.00 0.00 0.00 2.85
1635 1683 1.214673 TCCTCCTTCGCCTAGCTCTTA 59.785 52.381 0.00 0.00 0.00 2.10
1636 1684 2.032620 CCTCCTTCGCCTAGCTCTTAA 58.967 52.381 0.00 0.00 0.00 1.85
1637 1685 2.630580 CCTCCTTCGCCTAGCTCTTAAT 59.369 50.000 0.00 0.00 0.00 1.40
1638 1686 3.070302 CCTCCTTCGCCTAGCTCTTAATT 59.930 47.826 0.00 0.00 0.00 1.40
1639 1687 4.281182 CCTCCTTCGCCTAGCTCTTAATTA 59.719 45.833 0.00 0.00 0.00 1.40
1640 1688 5.197682 TCCTTCGCCTAGCTCTTAATTAC 57.802 43.478 0.00 0.00 0.00 1.89
1643 1691 6.016443 TCCTTCGCCTAGCTCTTAATTACTAC 60.016 42.308 0.00 0.00 0.00 2.73
1739 1795 7.384477 GTGTTTAATTCTCTGTACCACCTAGT 58.616 38.462 0.00 0.00 0.00 2.57
1740 1796 8.526147 GTGTTTAATTCTCTGTACCACCTAGTA 58.474 37.037 0.00 0.00 0.00 1.82
1742 1798 5.855740 AATTCTCTGTACCACCTAGTAGC 57.144 43.478 0.00 0.00 0.00 3.58
1745 1801 3.522343 TCTCTGTACCACCTAGTAGCTGA 59.478 47.826 0.00 0.00 0.00 4.26
1746 1802 4.166337 TCTCTGTACCACCTAGTAGCTGAT 59.834 45.833 0.00 0.00 0.00 2.90
1747 1803 4.868268 TCTGTACCACCTAGTAGCTGATT 58.132 43.478 0.00 0.00 0.00 2.57
1748 1804 4.888239 TCTGTACCACCTAGTAGCTGATTC 59.112 45.833 0.00 0.00 0.00 2.52
1749 1805 3.630769 TGTACCACCTAGTAGCTGATTCG 59.369 47.826 0.00 0.00 0.00 3.34
1750 1806 1.409427 ACCACCTAGTAGCTGATTCGC 59.591 52.381 0.00 0.00 0.00 4.70
1751 1807 1.409064 CCACCTAGTAGCTGATTCGCA 59.591 52.381 0.00 0.00 0.00 5.10
1752 1808 2.036475 CCACCTAGTAGCTGATTCGCAT 59.964 50.000 0.00 0.00 0.00 4.73
1810 1866 7.043565 CCTAATTATGCTTGATTTGGTTGCTT 58.956 34.615 8.63 0.00 0.00 3.91
1839 2003 6.820656 TCTTGCTTTCTCTCTACATTTCCATC 59.179 38.462 0.00 0.00 0.00 3.51
1901 2065 9.965824 AATTTCATTTCTTTACACACAAGTAGG 57.034 29.630 0.00 0.00 0.00 3.18
1902 2066 8.740123 TTTCATTTCTTTACACACAAGTAGGA 57.260 30.769 0.00 0.00 0.00 2.94
1903 2067 7.962964 TCATTTCTTTACACACAAGTAGGAG 57.037 36.000 0.00 0.00 0.00 3.69
1904 2068 7.506114 TCATTTCTTTACACACAAGTAGGAGT 58.494 34.615 0.00 0.00 0.00 3.85
1905 2069 8.644216 TCATTTCTTTACACACAAGTAGGAGTA 58.356 33.333 0.00 0.00 0.00 2.59
1956 2120 3.063997 CGGTCAAAGCTACTTATTGCCTG 59.936 47.826 0.00 0.00 0.00 4.85
1979 2143 4.562394 GGTTTCATTTCCACGCATACAATG 59.438 41.667 0.00 0.00 0.00 2.82
1993 2157 6.317642 ACGCATACAATGGCTAAACATAGAAA 59.682 34.615 0.00 0.00 0.00 2.52
1997 2161 8.892723 CATACAATGGCTAAACATAGAAACTGA 58.107 33.333 0.00 0.00 0.00 3.41
2023 2187 6.447162 GTCAAAGTTGCTACTTATTGCCTTT 58.553 36.000 13.95 0.00 43.74 3.11
2078 2242 3.710209 AGCTGAGGTCAAAGTTGCTAT 57.290 42.857 0.00 0.00 0.00 2.97
2080 2244 5.165961 AGCTGAGGTCAAAGTTGCTATTA 57.834 39.130 0.00 0.00 0.00 0.98
2081 2245 5.749462 AGCTGAGGTCAAAGTTGCTATTAT 58.251 37.500 0.00 0.00 0.00 1.28
2083 2247 6.094603 AGCTGAGGTCAAAGTTGCTATTATTG 59.905 38.462 0.00 0.00 0.00 1.90
2084 2248 6.194796 TGAGGTCAAAGTTGCTATTATTGC 57.805 37.500 0.00 0.00 0.00 3.56
2086 2250 5.264395 AGGTCAAAGTTGCTATTATTGCCT 58.736 37.500 0.00 0.00 0.00 4.75
2090 2254 7.063426 GGTCAAAGTTGCTATTATTGCCTTTTC 59.937 37.037 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 4.619760 TCTGTTAACGTCAGTAATCAAGCG 59.380 41.667 0.26 0.00 34.86 4.68
15 16 4.579454 ACTTGCTCTGTTAACGTCAGTA 57.421 40.909 0.26 0.00 34.86 2.74
62 67 7.815549 TCTGCGTATGTAAGAAAGAATACAACA 59.184 33.333 0.00 0.00 35.79 3.33
66 71 7.751047 TGTCTGCGTATGTAAGAAAGAATAC 57.249 36.000 0.00 0.00 0.00 1.89
71 76 6.090763 TGTTCATGTCTGCGTATGTAAGAAAG 59.909 38.462 0.00 0.00 0.00 2.62
81 86 0.320050 TGGCTGTTCATGTCTGCGTA 59.680 50.000 12.79 0.00 0.00 4.42
83 88 0.098200 CATGGCTGTTCATGTCTGCG 59.902 55.000 12.79 0.00 39.56 5.18
88 93 1.748244 CGGATCCATGGCTGTTCATGT 60.748 52.381 13.41 0.00 42.02 3.21
91 96 1.451927 GCGGATCCATGGCTGTTCA 60.452 57.895 13.41 0.00 0.00 3.18
92 97 1.451927 TGCGGATCCATGGCTGTTC 60.452 57.895 13.41 1.03 0.00 3.18
93 98 1.750399 GTGCGGATCCATGGCTGTT 60.750 57.895 13.41 0.00 0.00 3.16
95 100 1.452651 AAGTGCGGATCCATGGCTG 60.453 57.895 13.41 0.00 0.00 4.85
96 101 1.452651 CAAGTGCGGATCCATGGCT 60.453 57.895 13.41 0.00 0.00 4.75
98 103 2.484062 GCCAAGTGCGGATCCATGG 61.484 63.158 13.41 4.97 0.00 3.66
99 104 3.113745 GCCAAGTGCGGATCCATG 58.886 61.111 13.41 0.00 0.00 3.66
130 135 2.393271 ACGTACCTGCTCGTAGTACT 57.607 50.000 0.00 0.00 38.52 2.73
132 137 3.190079 CTGTACGTACCTGCTCGTAGTA 58.810 50.000 22.43 0.00 41.90 1.82
134 139 2.005451 ACTGTACGTACCTGCTCGTAG 58.995 52.381 22.43 12.65 41.90 3.51
232 237 1.597742 GGTACCGTATACTCCTCGCA 58.402 55.000 0.00 0.00 0.00 5.10
434 445 2.237893 TCTCATGAGGCTTCTTCATGCA 59.762 45.455 22.42 0.00 40.53 3.96
435 446 2.613133 GTCTCATGAGGCTTCTTCATGC 59.387 50.000 20.20 0.00 40.53 4.06
436 447 3.870274 TGTCTCATGAGGCTTCTTCATG 58.130 45.455 26.71 11.28 41.68 3.07
437 448 4.224594 TCTTGTCTCATGAGGCTTCTTCAT 59.775 41.667 26.71 0.00 33.37 2.57
541 559 1.514873 GTGCACATAGGCGCAAAGC 60.515 57.895 13.17 4.55 43.57 3.51
542 560 1.226101 CGTGCACATAGGCGCAAAG 60.226 57.895 18.64 0.00 44.30 2.77
543 561 2.866750 CGTGCACATAGGCGCAAA 59.133 55.556 18.64 0.00 44.30 3.68
609 628 1.429021 CGGCCACATGCATGTACAC 59.571 57.895 30.92 21.53 43.89 2.90
635 654 2.217038 ATCCATCCATCCGTCGGGG 61.217 63.158 12.29 5.78 37.02 5.73
636 655 1.004560 CATCCATCCATCCGTCGGG 60.005 63.158 12.29 0.00 0.00 5.14
637 656 1.004560 CCATCCATCCATCCGTCGG 60.005 63.158 4.39 4.39 0.00 4.79
638 657 1.669115 GCCATCCATCCATCCGTCG 60.669 63.158 0.00 0.00 0.00 5.12
641 660 0.179009 ACTTGCCATCCATCCATCCG 60.179 55.000 0.00 0.00 0.00 4.18
660 679 0.248094 GACGACGACGATGCTCATGA 60.248 55.000 15.32 0.00 42.66 3.07
662 681 1.297672 CGACGACGACGATGCTCAT 60.298 57.895 15.32 0.00 42.66 2.90
663 682 2.097728 CGACGACGACGATGCTCA 59.902 61.111 15.32 0.00 42.66 4.26
686 706 2.012673 GGTCGAGTACGTGGTAGATGT 58.987 52.381 0.00 0.00 40.69 3.06
687 707 2.011947 TGGTCGAGTACGTGGTAGATG 58.988 52.381 0.00 0.00 40.69 2.90
688 708 2.408271 TGGTCGAGTACGTGGTAGAT 57.592 50.000 0.00 0.00 40.69 1.98
689 709 2.011947 CATGGTCGAGTACGTGGTAGA 58.988 52.381 0.00 0.00 40.69 2.59
690 710 1.741706 ACATGGTCGAGTACGTGGTAG 59.258 52.381 0.00 0.00 40.69 3.18
691 711 1.825090 ACATGGTCGAGTACGTGGTA 58.175 50.000 0.00 0.00 40.69 3.25
692 712 1.470098 GTACATGGTCGAGTACGTGGT 59.530 52.381 0.00 0.00 40.69 4.16
693 713 2.184385 GTACATGGTCGAGTACGTGG 57.816 55.000 0.00 0.00 40.69 4.94
697 717 2.348666 ACGTACGTACATGGTCGAGTAC 59.651 50.000 21.41 11.91 37.75 2.73
699 719 1.442769 ACGTACGTACATGGTCGAGT 58.557 50.000 21.41 9.34 0.00 4.18
721 747 2.250841 TATTGCCGTGCGTGCATGTG 62.251 55.000 12.65 5.88 38.76 3.21
747 782 2.680913 CGAGCTCCCAACCTTTGCG 61.681 63.158 8.47 0.00 0.00 4.85
943 985 1.515954 CTAAAGAGGAAGCGGGCGA 59.484 57.895 0.00 0.00 0.00 5.54
1329 1371 1.077357 GTGTTGGTGGTGGTGGTGA 60.077 57.895 0.00 0.00 0.00 4.02
1357 1405 1.878522 CCGGCGAGTACTGCATGAC 60.879 63.158 9.30 0.00 0.00 3.06
1635 1683 9.091220 CCTAGAGGTAATGGCTAAGTAGTAATT 57.909 37.037 0.00 0.00 0.00 1.40
1636 1684 7.178805 GCCTAGAGGTAATGGCTAAGTAGTAAT 59.821 40.741 0.00 0.00 41.92 1.89
1637 1685 6.492772 GCCTAGAGGTAATGGCTAAGTAGTAA 59.507 42.308 0.00 0.00 41.92 2.24
1638 1686 6.008960 GCCTAGAGGTAATGGCTAAGTAGTA 58.991 44.000 0.00 0.00 41.92 1.82
1639 1687 4.833938 GCCTAGAGGTAATGGCTAAGTAGT 59.166 45.833 0.00 0.00 41.92 2.73
1640 1688 5.394224 GCCTAGAGGTAATGGCTAAGTAG 57.606 47.826 0.00 0.00 41.92 2.57
1739 1795 5.871524 GGATCATCTAAATGCGAATCAGCTA 59.128 40.000 0.00 0.00 38.13 3.32
1740 1796 4.694509 GGATCATCTAAATGCGAATCAGCT 59.305 41.667 0.00 0.00 38.13 4.24
1742 1798 6.370718 TCATGGATCATCTAAATGCGAATCAG 59.629 38.462 0.00 0.00 32.58 2.90
1745 1801 5.413833 GGTCATGGATCATCTAAATGCGAAT 59.586 40.000 0.00 0.00 32.58 3.34
1746 1802 4.756642 GGTCATGGATCATCTAAATGCGAA 59.243 41.667 0.00 0.00 32.58 4.70
1747 1803 4.318332 GGTCATGGATCATCTAAATGCGA 58.682 43.478 0.00 0.00 32.58 5.10
1748 1804 3.124128 CGGTCATGGATCATCTAAATGCG 59.876 47.826 0.00 0.00 32.58 4.73
1749 1805 3.438087 CCGGTCATGGATCATCTAAATGC 59.562 47.826 0.00 0.00 32.58 3.56
1750 1806 4.692625 GTCCGGTCATGGATCATCTAAATG 59.307 45.833 0.00 0.00 40.91 2.32
1751 1807 4.263068 GGTCCGGTCATGGATCATCTAAAT 60.263 45.833 0.00 0.00 40.91 1.40
1752 1808 3.071023 GGTCCGGTCATGGATCATCTAAA 59.929 47.826 0.00 0.00 40.91 1.85
1810 1866 7.819900 GGAAATGTAGAGAGAAAGCAAGAGTTA 59.180 37.037 0.00 0.00 0.00 2.24
1839 2003 7.389330 ACGAGTGGATGTGATATTAGTAGAGAG 59.611 40.741 0.00 0.00 0.00 3.20
1853 2017 0.792640 GACTTGCACGAGTGGATGTG 59.207 55.000 17.90 6.28 38.88 3.21
1901 2065 9.982651 TTTATGCTAAAGATACATGGAGTACTC 57.017 33.333 14.87 14.87 35.05 2.59
1905 2069 8.903820 GGTTTTTATGCTAAAGATACATGGAGT 58.096 33.333 0.00 0.00 0.00 3.85
1911 2075 6.781138 CGCAGGTTTTTATGCTAAAGATACA 58.219 36.000 0.00 0.00 0.00 2.29
1956 2120 3.840890 TGTATGCGTGGAAATGAAACC 57.159 42.857 0.00 0.00 0.00 3.27
1979 2143 5.488341 TGACCTCAGTTTCTATGTTTAGCC 58.512 41.667 0.00 0.00 0.00 3.93
1993 2157 4.423625 AAGTAGCAACTTTGACCTCAGT 57.576 40.909 0.00 0.00 43.60 3.41
1997 2161 4.459337 GGCAATAAGTAGCAACTTTGACCT 59.541 41.667 0.00 0.00 43.60 3.85
2023 2187 7.504922 GCAATTGTATGCGTAGAAATGAAAA 57.495 32.000 13.54 0.00 36.45 2.29
2078 2242 8.934507 TTTTTCTTCTTTCGAAAAGGCAATAA 57.065 26.923 12.41 2.47 40.30 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.