Multiple sequence alignment - TraesCS2D01G518100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G518100 chr2D 100.000 4684 0 0 1 4684 608536752 608541435 0.000000e+00 8650.0
1 TraesCS2D01G518100 chr2D 85.404 322 27 14 15 327 608530663 608530973 3.030000e-82 316.0
2 TraesCS2D01G518100 chr2D 100.000 141 0 0 5081 5221 608541832 608541972 1.440000e-65 261.0
3 TraesCS2D01G518100 chr2D 93.258 89 4 2 2721 2808 608539409 608539496 4.240000e-26 130.0
4 TraesCS2D01G518100 chr2D 93.258 89 4 2 2658 2745 608539472 608539559 4.240000e-26 130.0
5 TraesCS2D01G518100 chr2A 91.628 3201 188 39 1502 4676 740068020 740071166 0.000000e+00 4353.0
6 TraesCS2D01G518100 chr2A 88.340 789 41 19 683 1446 740067256 740068018 0.000000e+00 900.0
7 TraesCS2D01G518100 chr2A 98.039 102 1 1 475 576 740067113 740067213 5.370000e-40 176.0
8 TraesCS2D01G518100 chr2A 93.000 100 7 0 333 432 740066893 740066992 4.210000e-31 147.0
9 TraesCS2D01G518100 chr2A 81.675 191 20 7 4 194 740051514 740051689 1.520000e-30 145.0
10 TraesCS2D01G518100 chr2A 91.011 89 5 3 2721 2808 740069176 740069262 3.300000e-22 117.0
11 TraesCS2D01G518100 chr2A 89.888 89 3 3 2658 2745 740069238 740069321 5.530000e-20 110.0
12 TraesCS2D01G518100 chr2B 94.483 1160 58 4 1761 2916 742079174 742080331 0.000000e+00 1783.0
13 TraesCS2D01G518100 chr2B 89.984 1288 97 9 3326 4604 742080864 742082128 0.000000e+00 1635.0
14 TraesCS2D01G518100 chr2B 86.738 837 58 27 559 1381 742077644 742078441 0.000000e+00 881.0
15 TraesCS2D01G518100 chr2B 91.395 430 28 7 2907 3330 742080357 742080783 9.750000e-162 580.0
16 TraesCS2D01G518100 chr2B 86.684 383 24 11 472 838 742030785 742031156 2.930000e-107 399.0
17 TraesCS2D01G518100 chr2B 95.588 204 7 2 1504 1707 742078667 742078868 5.040000e-85 326.0
18 TraesCS2D01G518100 chr2B 84.036 332 34 11 4 319 742030269 742030597 8.500000e-78 302.0
19 TraesCS2D01G518100 chr2B 86.411 287 25 6 150 424 742077163 742077447 8.500000e-78 302.0
20 TraesCS2D01G518100 chr2B 86.222 225 20 8 4 220 742059642 742059863 3.140000e-57 233.0
21 TraesCS2D01G518100 chr2B 82.911 158 19 4 16 173 741989338 741989487 9.120000e-28 135.0
22 TraesCS2D01G518100 chr2B 88.889 90 5 1 70 159 742038573 742038657 7.150000e-19 106.0
23 TraesCS2D01G518100 chr2B 93.878 49 1 1 472 518 742077597 742077645 7.250000e-09 73.1
24 TraesCS2D01G518100 chr2B 100.000 38 0 0 431 468 742077483 742077520 2.610000e-08 71.3
25 TraesCS2D01G518100 chr1A 75.503 596 93 36 3133 3692 517703928 517704506 5.220000e-60 243.0
26 TraesCS2D01G518100 chr4B 75.000 580 95 29 3133 3673 273916941 273917509 6.800000e-54 222.0
27 TraesCS2D01G518100 chr1D 74.830 588 100 25 3133 3682 287973482 287972905 6.800000e-54 222.0
28 TraesCS2D01G518100 chr5B 74.703 589 99 28 3133 3682 584133073 584132496 3.170000e-52 217.0
29 TraesCS2D01G518100 chr5B 94.030 67 3 1 1447 1512 4063469 4063403 3.330000e-17 100.0
30 TraesCS2D01G518100 chr3A 74.533 589 100 25 3133 3682 452381802 452381225 1.470000e-50 211.0
31 TraesCS2D01G518100 chr3A 98.305 59 1 0 1447 1505 121407983 121408041 2.570000e-18 104.0
32 TraesCS2D01G518100 chr7A 74.439 579 100 29 3133 3673 652471914 652472482 6.850000e-49 206.0
33 TraesCS2D01G518100 chr7A 92.958 71 2 3 1447 1517 725651007 725650940 3.330000e-17 100.0
34 TraesCS2D01G518100 chr5A 74.261 575 103 23 3133 3672 74855310 74854746 3.190000e-47 200.0
35 TraesCS2D01G518100 chr5A 98.361 61 0 1 1447 1506 382299573 382299513 7.150000e-19 106.0
36 TraesCS2D01G518100 chr6D 77.746 346 59 12 3133 3470 168820982 168820647 4.120000e-46 196.0
37 TraesCS2D01G518100 chr6A 95.455 66 1 2 1447 1510 613967617 613967682 2.570000e-18 104.0
38 TraesCS2D01G518100 chr1B 98.305 59 1 0 1447 1505 392143702 392143760 2.570000e-18 104.0
39 TraesCS2D01G518100 chr1B 94.118 68 2 2 1447 1514 662595696 662595631 9.250000e-18 102.0
40 TraesCS2D01G518100 chr1B 96.721 61 1 1 1447 1507 117281321 117281380 3.330000e-17 100.0
41 TraesCS2D01G518100 chr7D 93.939 66 4 0 1447 1512 78286156 78286091 3.330000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G518100 chr2D 608536752 608541972 5220 False 2292.750000 8650 96.629000 1 5221 4 chr2D.!!$F2 5220
1 TraesCS2D01G518100 chr2A 740066893 740071166 4273 False 967.166667 4353 91.984333 333 4676 6 chr2A.!!$F2 4343
2 TraesCS2D01G518100 chr2B 742077163 742082128 4965 False 706.425000 1783 92.309625 150 4604 8 chr2B.!!$F5 4454
3 TraesCS2D01G518100 chr2B 742030269 742031156 887 False 350.500000 399 85.360000 4 838 2 chr2B.!!$F4 834
4 TraesCS2D01G518100 chr1A 517703928 517704506 578 False 243.000000 243 75.503000 3133 3692 1 chr1A.!!$F1 559
5 TraesCS2D01G518100 chr4B 273916941 273917509 568 False 222.000000 222 75.000000 3133 3673 1 chr4B.!!$F1 540
6 TraesCS2D01G518100 chr1D 287972905 287973482 577 True 222.000000 222 74.830000 3133 3682 1 chr1D.!!$R1 549
7 TraesCS2D01G518100 chr5B 584132496 584133073 577 True 217.000000 217 74.703000 3133 3682 1 chr5B.!!$R2 549
8 TraesCS2D01G518100 chr3A 452381225 452381802 577 True 211.000000 211 74.533000 3133 3682 1 chr3A.!!$R1 549
9 TraesCS2D01G518100 chr7A 652471914 652472482 568 False 206.000000 206 74.439000 3133 3673 1 chr7A.!!$F1 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
220 246 0.036765 AGCCGTCGACCAAATGCTAA 60.037 50.000 10.58 0.0 0.00 3.09 F
331 360 0.179084 AGCACGCACGCCACTATATT 60.179 50.000 0.00 0.0 0.00 1.28 F
369 400 0.321346 ACGCCACTCATCATCACACA 59.679 50.000 0.00 0.0 0.00 3.72 F
1488 1864 0.036875 CCGGGTTCTTCTTGAGCCTT 59.963 55.000 0.00 0.0 44.34 4.35 F
1641 2017 0.100325 TTGGTTGCTGACACTTTGCG 59.900 50.000 0.00 0.0 0.00 4.85 F
1959 2589 0.253327 CTTACTTGGGGGCCTCACTC 59.747 60.000 5.00 0.0 0.00 3.51 F
3694 4499 1.069823 CTCATTGGGAGCGTGCTATCT 59.930 52.381 0.00 0.0 36.69 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1469 1845 0.036875 AAGGCTCAAGAAGAACCCGG 59.963 55.000 0.00 0.0 32.64 5.73 R
1471 1847 1.270893 ACGAAGGCTCAAGAAGAACCC 60.271 52.381 0.00 0.0 32.64 4.11 R
1697 2073 1.892474 TGGTAAGGTTCCTTGCAATGC 59.108 47.619 18.31 0.0 31.75 3.56 R
2919 3601 0.032813 CCCCAAGGTTCCATGCTCAT 60.033 55.000 0.00 0.0 0.00 2.90 R
2921 3603 0.259938 ATCCCCAAGGTTCCATGCTC 59.740 55.000 0.00 0.0 0.00 4.26 R
3931 4736 0.529378 GAGATGCAGGGCAAAACAGG 59.471 55.000 0.00 0.0 43.62 4.00 R
5158 6006 0.107848 CGACAATAAAGGTCCCCGCT 60.108 55.000 0.00 0.0 31.55 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.968703 TAATAAACGCCACGCACGCC 61.969 55.000 0.00 0.00 0.00 5.68
50 51 4.700365 TGACGCTGTCACGCCGAG 62.700 66.667 7.20 0.00 37.67 4.63
56 57 3.573772 CTGTCACGCCGAGCCAAGA 62.574 63.158 0.00 0.00 0.00 3.02
62 63 2.496817 GCCGAGCCAAGATCGACT 59.503 61.111 3.49 0.00 44.55 4.18
66 67 2.803492 GCCGAGCCAAGATCGACTTTAT 60.803 50.000 3.49 0.00 44.55 1.40
81 82 9.394477 GATCGACTTTATTAAAAACACTTTGCT 57.606 29.630 0.00 0.00 0.00 3.91
99 100 2.829720 TGCTTACTTATCCACTCCACGT 59.170 45.455 0.00 0.00 0.00 4.49
101 102 4.647853 TGCTTACTTATCCACTCCACGTAT 59.352 41.667 0.00 0.00 0.00 3.06
102 103 5.221130 GCTTACTTATCCACTCCACGTATC 58.779 45.833 0.00 0.00 0.00 2.24
113 114 4.750098 CACTCCACGTATCAAGTGTTTCTT 59.250 41.667 9.42 0.00 37.88 2.52
128 129 3.246619 GTTTCTTGACTCGCTCCACTAG 58.753 50.000 0.00 0.00 0.00 2.57
143 144 3.141398 CCACTAGCTTGCTTTGAGTGAA 58.859 45.455 19.62 0.00 39.94 3.18
161 162 1.060698 GAAACGCTAGCGAACCACATC 59.939 52.381 41.33 22.17 42.83 3.06
167 168 1.854743 CTAGCGAACCACATCGACATG 59.145 52.381 0.24 0.00 45.48 3.21
220 246 0.036765 AGCCGTCGACCAAATGCTAA 60.037 50.000 10.58 0.00 0.00 3.09
300 329 1.841663 CTTTTCCAGCACCGTGACCG 61.842 60.000 1.65 0.00 0.00 4.79
326 355 2.509336 GATAGCACGCACGCCACT 60.509 61.111 0.00 0.00 0.00 4.00
329 358 0.671796 ATAGCACGCACGCCACTATA 59.328 50.000 0.00 0.00 0.00 1.31
331 360 0.179084 AGCACGCACGCCACTATATT 60.179 50.000 0.00 0.00 0.00 1.28
369 400 0.321346 ACGCCACTCATCATCACACA 59.679 50.000 0.00 0.00 0.00 3.72
377 408 1.066215 TCATCATCACACACTTCCCCG 60.066 52.381 0.00 0.00 0.00 5.73
428 459 3.912907 CCCCTCGATCGGAACCGG 61.913 72.222 16.41 0.00 40.25 5.28
429 460 3.912907 CCCTCGATCGGAACCGGG 61.913 72.222 16.41 13.10 40.25 5.73
578 745 0.748005 CTGAAATACCCCAGCCCACG 60.748 60.000 0.00 0.00 0.00 4.94
580 747 2.206182 GAAATACCCCAGCCCACGGT 62.206 60.000 0.00 0.00 0.00 4.83
628 795 0.395724 CCCCGATCCCCTCCAAAAAG 60.396 60.000 0.00 0.00 0.00 2.27
629 796 1.037579 CCCGATCCCCTCCAAAAAGC 61.038 60.000 0.00 0.00 0.00 3.51
712 904 0.803768 CGTCTGCCTCCAATCGAGTG 60.804 60.000 5.75 5.75 36.82 3.51
742 934 2.666812 GGTAGGTCACCCCGGTTG 59.333 66.667 0.00 0.00 42.07 3.77
743 935 2.666812 GTAGGTCACCCCGGTTGG 59.333 66.667 0.00 0.00 38.74 3.77
744 936 3.324108 TAGGTCACCCCGGTTGGC 61.324 66.667 0.00 0.00 38.74 4.52
745 937 3.857521 TAGGTCACCCCGGTTGGCT 62.858 63.158 0.00 0.00 38.74 4.75
746 938 4.280019 GGTCACCCCGGTTGGCTT 62.280 66.667 0.00 0.00 0.00 4.35
747 939 2.203437 GTCACCCCGGTTGGCTTT 60.203 61.111 0.00 0.00 0.00 3.51
784 999 1.258676 GTTCTCCTCCTCGTGGAACT 58.741 55.000 7.75 0.00 42.66 3.01
804 1019 1.248785 CGACTCTCTTTCCGTGGGGA 61.249 60.000 0.00 0.00 41.83 4.81
805 1020 0.533032 GACTCTCTTTCCGTGGGGAG 59.467 60.000 0.00 0.00 44.98 4.30
806 1021 1.219393 CTCTCTTTCCGTGGGGAGC 59.781 63.158 0.00 0.00 44.98 4.70
807 1022 2.125512 CTCTTTCCGTGGGGAGCG 60.126 66.667 0.00 0.00 44.98 5.03
808 1023 2.602267 TCTTTCCGTGGGGAGCGA 60.602 61.111 0.00 0.00 44.98 4.93
810 1025 1.741770 CTTTCCGTGGGGAGCGAAG 60.742 63.158 0.00 0.00 44.98 3.79
811 1026 2.167398 CTTTCCGTGGGGAGCGAAGA 62.167 60.000 0.00 0.00 44.98 2.87
812 1027 2.167398 TTTCCGTGGGGAGCGAAGAG 62.167 60.000 0.00 0.00 44.98 2.85
900 1115 1.302832 GGGCAGGTGAACTCCACTG 60.303 63.158 0.00 0.00 45.03 3.66
977 1192 3.432588 GCACAGCAGCAGCAGGAG 61.433 66.667 3.17 0.00 45.49 3.69
978 1193 2.032223 CACAGCAGCAGCAGGAGT 59.968 61.111 3.17 0.00 45.49 3.85
1101 1316 4.547859 CAGGTATGCTCCTGCCAC 57.452 61.111 9.43 0.00 46.53 5.01
1142 1359 1.280133 TCCTCTTCCTCACATGCTTGG 59.720 52.381 4.44 0.00 0.00 3.61
1164 1381 8.528044 TTGGTGTTCCTTTTCTGTACTTTATT 57.472 30.769 0.00 0.00 34.23 1.40
1165 1382 9.629878 TTGGTGTTCCTTTTCTGTACTTTATTA 57.370 29.630 0.00 0.00 34.23 0.98
1166 1383 9.802039 TGGTGTTCCTTTTCTGTACTTTATTAT 57.198 29.630 0.00 0.00 34.23 1.28
1219 1436 4.397420 TCTTGGCTGCTCTTGTTTGATAA 58.603 39.130 0.00 0.00 0.00 1.75
1221 1438 4.707030 TGGCTGCTCTTGTTTGATAATG 57.293 40.909 0.00 0.00 0.00 1.90
1240 1457 3.267974 CCGCAGGCCTTCTGTTTC 58.732 61.111 0.00 0.00 46.14 2.78
1246 1463 2.421424 GCAGGCCTTCTGTTTCTGTATG 59.579 50.000 0.00 0.00 45.08 2.39
1257 1474 7.015226 TCTGTTTCTGTATGGCATTTATTCG 57.985 36.000 4.78 0.00 0.00 3.34
1267 1484 5.484173 TGGCATTTATTCGTCATCTGAAC 57.516 39.130 0.00 0.00 0.00 3.18
1411 1787 0.529992 CCGACCTCGATTTGGTAGCC 60.530 60.000 0.00 0.00 43.02 3.93
1448 1824 3.698029 CGGGAGGAATTTGCTGTATTG 57.302 47.619 0.00 0.00 0.00 1.90
1449 1825 3.278574 CGGGAGGAATTTGCTGTATTGA 58.721 45.455 0.00 0.00 0.00 2.57
1450 1826 3.885297 CGGGAGGAATTTGCTGTATTGAT 59.115 43.478 0.00 0.00 0.00 2.57
1451 1827 4.261322 CGGGAGGAATTTGCTGTATTGATG 60.261 45.833 0.00 0.00 0.00 3.07
1452 1828 4.038402 GGGAGGAATTTGCTGTATTGATGG 59.962 45.833 0.00 0.00 0.00 3.51
1453 1829 4.500375 GGAGGAATTTGCTGTATTGATGGC 60.500 45.833 0.00 0.00 0.00 4.40
1454 1830 4.284178 AGGAATTTGCTGTATTGATGGCT 58.716 39.130 0.00 0.00 0.00 4.75
1455 1831 4.713321 AGGAATTTGCTGTATTGATGGCTT 59.287 37.500 0.00 0.00 0.00 4.35
1456 1832 5.188359 AGGAATTTGCTGTATTGATGGCTTT 59.812 36.000 0.00 0.00 0.00 3.51
1457 1833 5.292589 GGAATTTGCTGTATTGATGGCTTTG 59.707 40.000 0.00 0.00 0.00 2.77
1458 1834 4.870123 TTTGCTGTATTGATGGCTTTGT 57.130 36.364 0.00 0.00 0.00 2.83
1459 1835 4.870123 TTGCTGTATTGATGGCTTTGTT 57.130 36.364 0.00 0.00 0.00 2.83
1460 1836 5.973899 TTGCTGTATTGATGGCTTTGTTA 57.026 34.783 0.00 0.00 0.00 2.41
1461 1837 5.973899 TGCTGTATTGATGGCTTTGTTAA 57.026 34.783 0.00 0.00 0.00 2.01
1462 1838 6.528537 TGCTGTATTGATGGCTTTGTTAAT 57.471 33.333 0.00 0.00 0.00 1.40
1463 1839 6.934056 TGCTGTATTGATGGCTTTGTTAATT 58.066 32.000 0.00 0.00 0.00 1.40
1464 1840 7.035004 TGCTGTATTGATGGCTTTGTTAATTC 58.965 34.615 0.00 0.00 0.00 2.17
1465 1841 7.035004 GCTGTATTGATGGCTTTGTTAATTCA 58.965 34.615 0.00 0.00 0.00 2.57
1466 1842 7.545265 GCTGTATTGATGGCTTTGTTAATTCAA 59.455 33.333 0.00 0.00 0.00 2.69
1467 1843 9.421806 CTGTATTGATGGCTTTGTTAATTCAAA 57.578 29.630 0.00 0.00 36.18 2.69
1474 1850 4.251543 CTTTGTTAATTCAAAGCCGGGT 57.748 40.909 0.00 0.00 44.57 5.28
1475 1851 4.627058 CTTTGTTAATTCAAAGCCGGGTT 58.373 39.130 14.44 14.44 44.57 4.11
1476 1852 3.926821 TGTTAATTCAAAGCCGGGTTC 57.073 42.857 21.02 4.87 0.00 3.62
1477 1853 3.492337 TGTTAATTCAAAGCCGGGTTCT 58.508 40.909 21.02 7.30 0.00 3.01
1478 1854 3.892588 TGTTAATTCAAAGCCGGGTTCTT 59.107 39.130 21.02 12.99 0.00 2.52
1479 1855 4.022676 TGTTAATTCAAAGCCGGGTTCTTC 60.023 41.667 21.02 5.50 0.00 2.87
1480 1856 2.586648 ATTCAAAGCCGGGTTCTTCT 57.413 45.000 21.02 0.00 0.00 2.85
1481 1857 2.358322 TTCAAAGCCGGGTTCTTCTT 57.642 45.000 21.02 0.00 0.00 2.52
1482 1858 1.604604 TCAAAGCCGGGTTCTTCTTG 58.395 50.000 21.02 13.88 0.00 3.02
1483 1859 1.142060 TCAAAGCCGGGTTCTTCTTGA 59.858 47.619 21.02 16.10 0.00 3.02
1484 1860 1.537202 CAAAGCCGGGTTCTTCTTGAG 59.463 52.381 21.02 0.00 0.00 3.02
1485 1861 0.606673 AAGCCGGGTTCTTCTTGAGC 60.607 55.000 14.44 0.00 0.00 4.26
1486 1862 2.041115 GCCGGGTTCTTCTTGAGCC 61.041 63.158 2.18 0.00 44.20 4.70
1487 1863 1.679898 CCGGGTTCTTCTTGAGCCT 59.320 57.895 0.00 0.00 44.34 4.58
1488 1864 0.036875 CCGGGTTCTTCTTGAGCCTT 59.963 55.000 0.00 0.00 44.34 4.35
1489 1865 1.443802 CGGGTTCTTCTTGAGCCTTC 58.556 55.000 0.00 0.00 44.34 3.46
1490 1866 1.443802 GGGTTCTTCTTGAGCCTTCG 58.556 55.000 0.00 0.00 44.34 3.79
1491 1867 1.270893 GGGTTCTTCTTGAGCCTTCGT 60.271 52.381 0.00 0.00 44.34 3.85
1492 1868 2.495084 GGTTCTTCTTGAGCCTTCGTT 58.505 47.619 0.00 0.00 42.04 3.85
1493 1869 2.480802 GGTTCTTCTTGAGCCTTCGTTC 59.519 50.000 0.00 0.00 42.04 3.95
1494 1870 3.394719 GTTCTTCTTGAGCCTTCGTTCT 58.605 45.455 0.00 0.00 0.00 3.01
1495 1871 4.557205 GTTCTTCTTGAGCCTTCGTTCTA 58.443 43.478 0.00 0.00 0.00 2.10
1496 1872 4.866508 TCTTCTTGAGCCTTCGTTCTAA 57.133 40.909 0.00 0.00 0.00 2.10
1497 1873 5.209818 TCTTCTTGAGCCTTCGTTCTAAA 57.790 39.130 0.00 0.00 0.00 1.85
1498 1874 5.607477 TCTTCTTGAGCCTTCGTTCTAAAA 58.393 37.500 0.00 0.00 0.00 1.52
1499 1875 6.053005 TCTTCTTGAGCCTTCGTTCTAAAAA 58.947 36.000 0.00 0.00 0.00 1.94
1533 1909 4.808895 GCGTATGTTGATGGATGTCTGTAA 59.191 41.667 0.00 0.00 0.00 2.41
1593 1969 3.503363 TGCATCTGTCAACATTTCAGTCC 59.497 43.478 0.00 0.00 0.00 3.85
1641 2017 0.100325 TTGGTTGCTGACACTTTGCG 59.900 50.000 0.00 0.00 0.00 4.85
1648 2024 0.583438 CTGACACTTTGCGTCACCAG 59.417 55.000 0.00 0.00 38.45 4.00
1697 2073 5.761726 TGATATTCTTGCTCACCTAATGCAG 59.238 40.000 0.00 0.00 38.01 4.41
1716 2259 2.094545 CAGCATTGCAAGGAACCTTACC 60.095 50.000 16.56 0.00 34.50 2.85
1717 2260 1.892474 GCATTGCAAGGAACCTTACCA 59.108 47.619 16.56 4.27 34.50 3.25
1733 2276 4.202202 CCTTACCACAGTTTTGGCAATCAA 60.202 41.667 0.00 0.00 40.77 2.57
1751 2294 9.503427 GGCAATCAATAGTTACATTTTACTGAC 57.497 33.333 0.00 0.00 0.00 3.51
1753 2296 9.702726 CAATCAATAGTTACATTTTACTGACGG 57.297 33.333 0.00 0.00 0.00 4.79
1769 2312 4.157607 GGGCATTACATGGACCCG 57.842 61.111 0.00 0.00 0.00 5.28
1834 2464 7.538303 ACATGAATGTTTGTTTTGTTCCTTC 57.462 32.000 0.00 0.00 37.90 3.46
1956 2586 2.047769 TTACTTACTTGGGGGCCTCA 57.952 50.000 0.00 0.00 0.00 3.86
1959 2589 0.253327 CTTACTTGGGGGCCTCACTC 59.747 60.000 5.00 0.00 0.00 3.51
1977 2607 3.389002 CACTCATGGTCATCTACATCCCA 59.611 47.826 0.00 0.00 0.00 4.37
1989 2619 5.645056 TCTACATCCCATTGGCATTTCTA 57.355 39.130 0.00 0.00 0.00 2.10
1998 2628 6.051074 CCCATTGGCATTTCTAAAGGATTTC 58.949 40.000 0.00 0.00 40.09 2.17
2076 2706 3.119495 GCAAATCTTCATTTGGCGGTAGT 60.119 43.478 9.01 0.00 46.36 2.73
2175 2805 3.698289 TGTGGACCTTCCTGTACTAGAG 58.302 50.000 0.00 0.00 37.46 2.43
2181 2811 3.592427 ACCTTCCTGTACTAGAGGAGACA 59.408 47.826 0.00 0.00 40.79 3.41
2268 2898 5.127519 CACCAAGGAGATTGCAATTTATGGA 59.872 40.000 24.13 0.00 37.60 3.41
2269 2899 5.127682 ACCAAGGAGATTGCAATTTATGGAC 59.872 40.000 24.13 9.10 37.60 4.02
2340 2971 5.674525 TCTTGCCTGTTACTTATGATCCAG 58.325 41.667 0.00 0.00 0.00 3.86
2454 3085 3.528009 GCACTTGCAAGAACTAGTGTC 57.472 47.619 32.50 11.97 42.85 3.67
2505 3136 3.348119 GGGACTCTTCACCCTTTTCATC 58.652 50.000 0.00 0.00 42.56 2.92
2553 3184 2.678471 ATGCTGCCAAAGTTATTGCC 57.322 45.000 0.00 0.00 0.00 4.52
2691 3322 2.039746 AGCTGTGCATTGGTACCAACTA 59.960 45.455 29.35 15.37 38.88 2.24
2708 3339 6.374417 CCAACTACCAAGTGGGCTATATAT 57.626 41.667 1.69 0.00 40.06 0.86
2776 3407 4.156455 CCAAGTGGGCTGTATATTGTCT 57.844 45.455 0.00 0.00 0.00 3.41
2781 3412 7.256332 CCAAGTGGGCTGTATATTGTCTATACT 60.256 40.741 4.55 0.00 32.98 2.12
2905 3536 6.694447 CATTCCTATTTCATGGGGCAATTAG 58.306 40.000 0.00 0.00 0.00 1.73
2919 3601 5.385509 GGCAATTAGTGAGCCTGTTTTAA 57.614 39.130 0.00 0.00 44.92 1.52
2920 3602 5.965922 GGCAATTAGTGAGCCTGTTTTAAT 58.034 37.500 0.00 0.00 44.92 1.40
2921 3603 5.807011 GGCAATTAGTGAGCCTGTTTTAATG 59.193 40.000 0.00 0.00 44.92 1.90
2922 3604 6.350110 GGCAATTAGTGAGCCTGTTTTAATGA 60.350 38.462 0.00 0.00 44.92 2.57
2923 3605 6.749118 GCAATTAGTGAGCCTGTTTTAATGAG 59.251 38.462 0.00 0.00 0.00 2.90
2924 3606 5.880054 TTAGTGAGCCTGTTTTAATGAGC 57.120 39.130 0.00 0.00 0.00 4.26
2925 3607 3.754965 AGTGAGCCTGTTTTAATGAGCA 58.245 40.909 0.00 0.00 0.00 4.26
2926 3608 4.338879 AGTGAGCCTGTTTTAATGAGCAT 58.661 39.130 0.00 0.00 0.00 3.79
2927 3609 4.157289 AGTGAGCCTGTTTTAATGAGCATG 59.843 41.667 0.00 0.00 0.00 4.06
2928 3610 3.444742 TGAGCCTGTTTTAATGAGCATGG 59.555 43.478 0.00 0.00 0.00 3.66
2929 3611 3.696051 GAGCCTGTTTTAATGAGCATGGA 59.304 43.478 0.00 0.00 0.00 3.41
2930 3612 4.088634 AGCCTGTTTTAATGAGCATGGAA 58.911 39.130 0.00 0.00 0.00 3.53
2931 3613 4.082026 AGCCTGTTTTAATGAGCATGGAAC 60.082 41.667 0.00 0.00 0.00 3.62
2932 3614 4.747810 CCTGTTTTAATGAGCATGGAACC 58.252 43.478 0.00 0.00 0.00 3.62
2933 3615 4.463891 CCTGTTTTAATGAGCATGGAACCT 59.536 41.667 0.00 0.00 0.00 3.50
2941 3623 1.494721 GAGCATGGAACCTTGGGGATA 59.505 52.381 8.43 0.00 36.25 2.59
2946 3628 4.352893 CATGGAACCTTGGGGATAAACTT 58.647 43.478 0.00 0.00 36.25 2.66
3053 3735 5.876651 TGTCAGCTATGTCATATGGTCTT 57.123 39.130 2.13 0.00 0.00 3.01
3074 3756 1.774110 TCACTGGTTGGTTGTTGCAT 58.226 45.000 0.00 0.00 0.00 3.96
3091 3773 7.094508 TGTTGCATTCTTCTGTTCAGTTTTA 57.905 32.000 0.00 0.00 0.00 1.52
3093 3775 8.196771 TGTTGCATTCTTCTGTTCAGTTTTAAT 58.803 29.630 0.00 0.00 0.00 1.40
3094 3776 8.694394 GTTGCATTCTTCTGTTCAGTTTTAATC 58.306 33.333 0.00 0.00 0.00 1.75
3095 3777 7.077605 TGCATTCTTCTGTTCAGTTTTAATCG 58.922 34.615 0.00 0.00 0.00 3.34
3096 3778 7.041440 TGCATTCTTCTGTTCAGTTTTAATCGA 60.041 33.333 0.00 0.00 0.00 3.59
3097 3779 7.479916 GCATTCTTCTGTTCAGTTTTAATCGAG 59.520 37.037 0.00 0.00 0.00 4.04
3100 3782 6.984474 TCTTCTGTTCAGTTTTAATCGAGTGT 59.016 34.615 0.00 0.00 0.00 3.55
3101 3783 7.494625 TCTTCTGTTCAGTTTTAATCGAGTGTT 59.505 33.333 0.00 0.00 0.00 3.32
3104 3786 7.169308 TCTGTTCAGTTTTAATCGAGTGTTCTC 59.831 37.037 0.00 0.00 37.35 2.87
3105 3787 6.759356 TGTTCAGTTTTAATCGAGTGTTCTCA 59.241 34.615 0.00 0.00 40.44 3.27
3106 3788 7.042725 TGTTCAGTTTTAATCGAGTGTTCTCAG 60.043 37.037 0.00 0.00 40.44 3.35
3108 3790 6.984474 TCAGTTTTAATCGAGTGTTCTCAGTT 59.016 34.615 0.00 0.00 40.44 3.16
3109 3791 7.169308 TCAGTTTTAATCGAGTGTTCTCAGTTC 59.831 37.037 0.00 0.00 40.44 3.01
3110 3792 6.984474 AGTTTTAATCGAGTGTTCTCAGTTCA 59.016 34.615 0.00 0.00 40.44 3.18
3111 3793 7.494625 AGTTTTAATCGAGTGTTCTCAGTTCAA 59.505 33.333 0.00 0.00 40.44 2.69
3123 3807 3.265221 TCTCAGTTCAATGCCTGATCCTT 59.735 43.478 3.56 0.00 37.11 3.36
3254 3940 1.729586 TCTCTGGTGGCTTGGTAAGT 58.270 50.000 0.00 0.00 0.00 2.24
3256 3942 3.244582 TCTCTGGTGGCTTGGTAAGTTA 58.755 45.455 0.00 0.00 0.00 2.24
3282 3969 7.489574 TCCTTTTTGCACATTTTATTGTTCC 57.510 32.000 0.00 0.00 0.00 3.62
3299 3986 7.944729 ATTGTTCCAATAGCACTCAGTATTT 57.055 32.000 0.00 0.00 0.00 1.40
3461 4236 7.606349 TGTTGTGCATGCCAGTATTTTATTTA 58.394 30.769 16.68 0.00 0.00 1.40
3496 4272 8.718734 GTCGAATCAGTAAGGAATAGTTTTGTT 58.281 33.333 0.00 0.00 0.00 2.83
3694 4499 1.069823 CTCATTGGGAGCGTGCTATCT 59.930 52.381 0.00 0.00 36.69 1.98
3732 4537 5.163754 ACGCATTAACAGAAGGCTAATGTTC 60.164 40.000 17.51 6.02 38.14 3.18
3733 4538 5.582550 GCATTAACAGAAGGCTAATGTTCC 58.417 41.667 17.51 5.27 38.14 3.62
3772 4577 4.142687 GCATAACTGCGGTACTTTGACAAT 60.143 41.667 0.00 0.00 38.92 2.71
3797 4602 2.046507 CTGCGCAGGGCTCTTTCT 60.047 61.111 29.88 0.00 44.05 2.52
3800 4605 1.968540 GCGCAGGGCTCTTTCTGTT 60.969 57.895 0.30 0.00 39.11 3.16
3898 4703 2.494471 TCCACGGTCGACATTATTCAGT 59.506 45.455 18.91 1.03 0.00 3.41
4013 4822 4.456911 CCACTTCTCATGCACAAATACTGT 59.543 41.667 0.00 0.00 39.56 3.55
4015 4824 5.854866 CACTTCTCATGCACAAATACTGTTG 59.145 40.000 0.00 0.00 35.47 3.33
4057 4866 6.588719 TGCAAAGTTGAAATAGCTATTGGT 57.411 33.333 19.53 5.02 0.00 3.67
4103 4919 3.054582 TCTCTTTGCCTGCTCAAGATCAT 60.055 43.478 0.00 0.00 0.00 2.45
4118 4935 8.400947 GCTCAAGATCATTCTTACTTGCATTTA 58.599 33.333 0.00 0.00 40.28 1.40
4143 4962 7.287810 ACCATTTGTTTTACTCTGTCTACCTT 58.712 34.615 0.00 0.00 0.00 3.50
4266 5086 3.676324 CGGAGTGTACATCTGGAAGGTTC 60.676 52.174 0.00 0.00 0.00 3.62
4298 5118 7.975616 GGTTAGTTACGAAGTGTACATTGGATA 59.024 37.037 0.00 0.00 45.73 2.59
4355 5177 6.150332 TCTCTGTAAATCATAAGGATGGGGA 58.850 40.000 0.00 0.00 36.02 4.81
4379 5219 1.578423 GCACTGCAGCTCTGTTTCC 59.422 57.895 15.27 0.00 0.00 3.13
4380 5220 0.888285 GCACTGCAGCTCTGTTTCCT 60.888 55.000 15.27 0.00 0.00 3.36
4381 5221 1.602311 CACTGCAGCTCTGTTTCCTT 58.398 50.000 15.27 0.00 0.00 3.36
4382 5222 1.952296 CACTGCAGCTCTGTTTCCTTT 59.048 47.619 15.27 0.00 0.00 3.11
4383 5223 2.360165 CACTGCAGCTCTGTTTCCTTTT 59.640 45.455 15.27 0.00 0.00 2.27
4384 5224 3.026694 ACTGCAGCTCTGTTTCCTTTTT 58.973 40.909 15.27 0.00 0.00 1.94
4385 5225 4.036734 CACTGCAGCTCTGTTTCCTTTTTA 59.963 41.667 15.27 0.00 0.00 1.52
4386 5226 4.644685 ACTGCAGCTCTGTTTCCTTTTTAA 59.355 37.500 15.27 0.00 0.00 1.52
4387 5227 5.302823 ACTGCAGCTCTGTTTCCTTTTTAAT 59.697 36.000 15.27 0.00 0.00 1.40
4388 5228 6.160576 TGCAGCTCTGTTTCCTTTTTAATT 57.839 33.333 0.00 0.00 0.00 1.40
4389 5229 6.581712 TGCAGCTCTGTTTCCTTTTTAATTT 58.418 32.000 0.00 0.00 0.00 1.82
4390 5230 6.701400 TGCAGCTCTGTTTCCTTTTTAATTTC 59.299 34.615 0.00 0.00 0.00 2.17
4391 5231 6.129088 GCAGCTCTGTTTCCTTTTTAATTTCG 60.129 38.462 0.00 0.00 0.00 3.46
4392 5232 6.363357 CAGCTCTGTTTCCTTTTTAATTTCGG 59.637 38.462 0.00 0.00 0.00 4.30
4393 5233 5.118664 GCTCTGTTTCCTTTTTAATTTCGGC 59.881 40.000 0.00 0.00 0.00 5.54
4394 5234 5.534407 TCTGTTTCCTTTTTAATTTCGGCC 58.466 37.500 0.00 0.00 0.00 6.13
4395 5235 4.633175 TGTTTCCTTTTTAATTTCGGCCC 58.367 39.130 0.00 0.00 0.00 5.80
4396 5236 3.965379 TTCCTTTTTAATTTCGGCCCC 57.035 42.857 0.00 0.00 0.00 5.80
4460 5300 5.762711 TGAAACAGTGAAAGCTTAGCATACA 59.237 36.000 7.07 0.00 0.00 2.29
4494 5342 2.158986 TGATGTTGTGGCAAACCTTTGG 60.159 45.455 0.00 0.00 38.57 3.28
4510 5358 9.810545 CAAACCTTTGGAACTGTAAATTCTTAA 57.189 29.630 0.00 0.00 34.59 1.85
4537 5385 4.136796 TGCTACAAAATGCTCTGTCAACT 58.863 39.130 0.00 0.00 0.00 3.16
4541 5389 3.627577 ACAAAATGCTCTGTCAACTCGTT 59.372 39.130 0.00 0.00 0.00 3.85
4562 5410 5.449113 CGTTCTGTATAGCGCTGAAATTTTG 59.551 40.000 22.90 2.69 0.00 2.44
4564 5412 6.735678 TCTGTATAGCGCTGAAATTTTGAA 57.264 33.333 22.90 0.00 0.00 2.69
4567 5415 4.678509 ATAGCGCTGAAATTTTGAACGA 57.321 36.364 22.90 0.00 0.00 3.85
4651 5499 3.746492 GTGTGATGGGACTACACTTCAAC 59.254 47.826 0.00 0.00 41.01 3.18
4655 5503 5.581085 GTGATGGGACTACACTTCAACATAC 59.419 44.000 0.00 0.00 35.81 2.39
4657 5505 5.147330 TGGGACTACACTTCAACATACAG 57.853 43.478 0.00 0.00 0.00 2.74
4662 5510 7.324178 GGACTACACTTCAACATACAGAATCT 58.676 38.462 0.00 0.00 0.00 2.40
4664 5512 8.539770 ACTACACTTCAACATACAGAATCTTG 57.460 34.615 0.00 0.00 0.00 3.02
4668 5516 9.155975 ACACTTCAACATACAGAATCTTGATAC 57.844 33.333 0.00 0.00 0.00 2.24
4670 5518 9.593134 ACTTCAACATACAGAATCTTGATACTC 57.407 33.333 0.00 0.00 0.00 2.59
4676 5524 7.497249 ACATACAGAATCTTGATACTCAAAGGC 59.503 37.037 0.00 0.00 35.73 4.35
4677 5525 6.059787 ACAGAATCTTGATACTCAAAGGCT 57.940 37.500 0.00 0.00 35.73 4.58
4678 5526 6.479884 ACAGAATCTTGATACTCAAAGGCTT 58.520 36.000 0.00 0.00 35.73 4.35
4679 5527 6.944862 ACAGAATCTTGATACTCAAAGGCTTT 59.055 34.615 6.68 6.68 35.73 3.51
4680 5528 7.094463 ACAGAATCTTGATACTCAAAGGCTTTG 60.094 37.037 29.60 29.60 35.73 2.77
4681 5529 6.944862 AGAATCTTGATACTCAAAGGCTTTGT 59.055 34.615 32.46 20.56 41.36 2.83
4682 5530 5.947228 TCTTGATACTCAAAGGCTTTGTG 57.053 39.130 32.46 31.25 41.36 3.33
4683 5531 5.620206 TCTTGATACTCAAAGGCTTTGTGA 58.380 37.500 35.44 23.66 41.36 3.58
5097 5945 4.645131 TAGCGCCGGCACCCAAAA 62.645 61.111 28.98 0.32 43.41 2.44
5100 5948 4.656117 CGCCGGCACCCAAAAACC 62.656 66.667 28.98 0.00 0.00 3.27
5101 5949 3.230990 GCCGGCACCCAAAAACCT 61.231 61.111 24.80 0.00 0.00 3.50
5102 5950 2.733945 CCGGCACCCAAAAACCTG 59.266 61.111 0.00 0.00 0.00 4.00
5103 5951 2.028925 CGGCACCCAAAAACCTGC 59.971 61.111 0.00 0.00 0.00 4.85
5104 5952 2.498056 CGGCACCCAAAAACCTGCT 61.498 57.895 0.00 0.00 0.00 4.24
5105 5953 1.175983 CGGCACCCAAAAACCTGCTA 61.176 55.000 0.00 0.00 0.00 3.49
5106 5954 1.266178 GGCACCCAAAAACCTGCTAT 58.734 50.000 0.00 0.00 0.00 2.97
5107 5955 1.204704 GGCACCCAAAAACCTGCTATC 59.795 52.381 0.00 0.00 0.00 2.08
5108 5956 1.204704 GCACCCAAAAACCTGCTATCC 59.795 52.381 0.00 0.00 0.00 2.59
5109 5957 2.807676 CACCCAAAAACCTGCTATCCT 58.192 47.619 0.00 0.00 0.00 3.24
5110 5958 2.755103 CACCCAAAAACCTGCTATCCTC 59.245 50.000 0.00 0.00 0.00 3.71
5111 5959 2.649816 ACCCAAAAACCTGCTATCCTCT 59.350 45.455 0.00 0.00 0.00 3.69
5112 5960 3.076032 ACCCAAAAACCTGCTATCCTCTT 59.924 43.478 0.00 0.00 0.00 2.85
5113 5961 4.089361 CCCAAAAACCTGCTATCCTCTTT 58.911 43.478 0.00 0.00 0.00 2.52
5114 5962 4.082026 CCCAAAAACCTGCTATCCTCTTTG 60.082 45.833 0.00 0.00 0.00 2.77
5115 5963 4.524328 CCAAAAACCTGCTATCCTCTTTGT 59.476 41.667 0.00 0.00 0.00 2.83
5116 5964 5.335976 CCAAAAACCTGCTATCCTCTTTGTC 60.336 44.000 0.00 0.00 0.00 3.18
5117 5965 2.969628 ACCTGCTATCCTCTTTGTCG 57.030 50.000 0.00 0.00 0.00 4.35
5118 5966 2.180276 ACCTGCTATCCTCTTTGTCGT 58.820 47.619 0.00 0.00 0.00 4.34
5119 5967 2.166664 ACCTGCTATCCTCTTTGTCGTC 59.833 50.000 0.00 0.00 0.00 4.20
5120 5968 2.166459 CCTGCTATCCTCTTTGTCGTCA 59.834 50.000 0.00 0.00 0.00 4.35
5121 5969 3.181471 CCTGCTATCCTCTTTGTCGTCAT 60.181 47.826 0.00 0.00 0.00 3.06
5122 5970 4.437239 CTGCTATCCTCTTTGTCGTCATT 58.563 43.478 0.00 0.00 0.00 2.57
5123 5971 4.183865 TGCTATCCTCTTTGTCGTCATTG 58.816 43.478 0.00 0.00 0.00 2.82
5124 5972 3.557595 GCTATCCTCTTTGTCGTCATTGG 59.442 47.826 0.00 0.00 0.00 3.16
5125 5973 3.981071 ATCCTCTTTGTCGTCATTGGA 57.019 42.857 0.00 0.00 0.00 3.53
5126 5974 3.319137 TCCTCTTTGTCGTCATTGGAG 57.681 47.619 0.00 0.00 0.00 3.86
5127 5975 2.028112 TCCTCTTTGTCGTCATTGGAGG 60.028 50.000 14.71 14.71 0.00 4.30
5128 5976 2.028112 CCTCTTTGTCGTCATTGGAGGA 60.028 50.000 15.33 0.00 35.68 3.71
5129 5977 3.557054 CCTCTTTGTCGTCATTGGAGGAA 60.557 47.826 15.33 0.00 39.43 3.36
5130 5978 3.664107 TCTTTGTCGTCATTGGAGGAAG 58.336 45.455 0.00 0.00 39.43 3.46
5131 5979 1.808411 TTGTCGTCATTGGAGGAAGC 58.192 50.000 0.00 0.00 39.43 3.86
5132 5980 0.976641 TGTCGTCATTGGAGGAAGCT 59.023 50.000 0.00 0.00 39.43 3.74
5133 5981 1.338105 TGTCGTCATTGGAGGAAGCTG 60.338 52.381 0.00 0.00 39.43 4.24
5134 5982 0.391661 TCGTCATTGGAGGAAGCTGC 60.392 55.000 0.00 0.00 35.16 5.25
5135 5983 1.699656 CGTCATTGGAGGAAGCTGCG 61.700 60.000 0.00 0.00 0.00 5.18
5136 5984 1.078214 TCATTGGAGGAAGCTGCGG 60.078 57.895 0.00 0.00 0.00 5.69
5137 5985 2.117156 CATTGGAGGAAGCTGCGGG 61.117 63.158 0.00 0.00 0.00 6.13
5138 5986 3.350031 ATTGGAGGAAGCTGCGGGG 62.350 63.158 0.00 0.00 0.00 5.73
5140 5988 4.785453 GGAGGAAGCTGCGGGGTG 62.785 72.222 0.00 0.00 0.00 4.61
5141 5989 3.706373 GAGGAAGCTGCGGGGTGA 61.706 66.667 0.00 0.00 0.00 4.02
5142 5990 3.249189 AGGAAGCTGCGGGGTGAA 61.249 61.111 0.00 0.00 0.00 3.18
5143 5991 2.747855 GGAAGCTGCGGGGTGAAG 60.748 66.667 0.00 0.00 0.00 3.02
5144 5992 3.435186 GAAGCTGCGGGGTGAAGC 61.435 66.667 0.00 0.00 37.20 3.86
5148 5996 4.335647 CTGCGGGGTGAAGCCACT 62.336 66.667 0.27 0.00 42.77 4.00
5149 5997 2.925706 TGCGGGGTGAAGCCACTA 60.926 61.111 0.27 0.00 42.77 2.74
5150 5998 2.436115 GCGGGGTGAAGCCACTAC 60.436 66.667 0.27 0.00 42.77 2.73
5151 5999 3.065306 CGGGGTGAAGCCACTACA 58.935 61.111 0.27 0.00 42.77 2.74
5152 6000 1.373435 CGGGGTGAAGCCACTACAA 59.627 57.895 0.27 0.00 42.77 2.41
5153 6001 0.953960 CGGGGTGAAGCCACTACAAC 60.954 60.000 0.27 0.00 42.77 3.32
5154 6002 0.400594 GGGGTGAAGCCACTACAACT 59.599 55.000 0.27 0.00 42.77 3.16
5155 6003 1.523758 GGGTGAAGCCACTACAACTG 58.476 55.000 0.00 0.00 42.77 3.16
5156 6004 1.071699 GGGTGAAGCCACTACAACTGA 59.928 52.381 0.00 0.00 42.77 3.41
5157 6005 2.143925 GGTGAAGCCACTACAACTGAC 58.856 52.381 0.00 0.00 42.77 3.51
5158 6006 2.484770 GGTGAAGCCACTACAACTGACA 60.485 50.000 0.00 0.00 42.77 3.58
5159 6007 2.802816 GTGAAGCCACTACAACTGACAG 59.197 50.000 0.00 0.00 40.10 3.51
5160 6008 1.801178 GAAGCCACTACAACTGACAGC 59.199 52.381 1.25 0.00 0.00 4.40
5161 6009 0.319900 AGCCACTACAACTGACAGCG 60.320 55.000 1.25 0.00 0.00 5.18
5162 6010 1.291877 GCCACTACAACTGACAGCGG 61.292 60.000 1.25 0.00 0.00 5.52
5163 6011 0.670546 CCACTACAACTGACAGCGGG 60.671 60.000 1.25 0.00 0.00 6.13
5164 6012 0.670546 CACTACAACTGACAGCGGGG 60.671 60.000 1.25 0.00 0.00 5.73
5165 6013 0.830444 ACTACAACTGACAGCGGGGA 60.830 55.000 1.25 0.00 0.00 4.81
5166 6014 0.389948 CTACAACTGACAGCGGGGAC 60.390 60.000 1.25 0.00 0.00 4.46
5181 6029 1.746470 GGGACCTTTATTGTCGTGGG 58.254 55.000 0.00 0.00 33.46 4.61
5182 6030 1.680860 GGGACCTTTATTGTCGTGGGG 60.681 57.143 0.00 0.00 33.46 4.96
5183 6031 1.680860 GGACCTTTATTGTCGTGGGGG 60.681 57.143 0.00 0.00 33.46 5.40
5184 6032 1.003928 GACCTTTATTGTCGTGGGGGT 59.996 52.381 0.00 0.00 0.00 4.95
5185 6033 1.271707 ACCTTTATTGTCGTGGGGGTG 60.272 52.381 0.00 0.00 0.00 4.61
5186 6034 1.459450 CTTTATTGTCGTGGGGGTGG 58.541 55.000 0.00 0.00 0.00 4.61
5187 6035 0.609681 TTTATTGTCGTGGGGGTGGC 60.610 55.000 0.00 0.00 0.00 5.01
5188 6036 2.487274 TTATTGTCGTGGGGGTGGCC 62.487 60.000 0.00 0.00 0.00 5.36
5214 6062 3.650950 GGCAGAGCCCCTTGGTGA 61.651 66.667 0.00 0.00 44.06 4.02
5215 6063 2.360475 GCAGAGCCCCTTGGTGAC 60.360 66.667 0.00 0.00 0.00 3.67
5216 6064 2.046892 CAGAGCCCCTTGGTGACG 60.047 66.667 0.00 0.00 0.00 4.35
5217 6065 3.322466 AGAGCCCCTTGGTGACGG 61.322 66.667 0.00 0.00 0.00 4.79
5218 6066 3.637273 GAGCCCCTTGGTGACGGT 61.637 66.667 0.00 0.00 0.00 4.83
5219 6067 3.175710 AGCCCCTTGGTGACGGTT 61.176 61.111 0.00 0.00 0.00 4.44
5220 6068 2.983592 GCCCCTTGGTGACGGTTG 60.984 66.667 0.00 0.00 0.00 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.174835 GCGTGCGTGGCGTTTATT 59.825 55.556 0.00 0.00 0.00 1.40
2 3 3.795342 GGCGTGCGTGGCGTTTAT 61.795 61.111 0.00 0.00 0.00 1.40
48 49 8.234546 TGTTTTTAATAAAGTCGATCTTGGCTC 58.765 33.333 0.00 0.00 36.40 4.70
50 51 8.021396 AGTGTTTTTAATAAAGTCGATCTTGGC 58.979 33.333 0.00 0.00 36.40 4.52
56 57 9.744468 AAGCAAAGTGTTTTTAATAAAGTCGAT 57.256 25.926 0.00 0.00 0.00 3.59
66 67 9.738832 GTGGATAAGTAAGCAAAGTGTTTTTAA 57.261 29.630 0.00 0.00 0.00 1.52
78 79 2.829720 ACGTGGAGTGGATAAGTAAGCA 59.170 45.455 0.00 0.00 0.00 3.91
81 82 6.379133 ACTTGATACGTGGAGTGGATAAGTAA 59.621 38.462 0.00 0.00 0.00 2.24
83 84 4.710375 ACTTGATACGTGGAGTGGATAAGT 59.290 41.667 0.00 0.00 0.00 2.24
84 85 5.043903 CACTTGATACGTGGAGTGGATAAG 58.956 45.833 0.00 0.00 36.68 1.73
128 129 1.123655 GCGTTTCACTCAAAGCAAGC 58.876 50.000 0.00 0.00 0.00 4.01
132 133 1.462541 CGCTAGCGTTTCACTCAAAGC 60.463 52.381 28.66 0.00 34.35 3.51
134 135 2.143008 TCGCTAGCGTTTCACTCAAA 57.857 45.000 34.10 10.34 40.74 2.69
143 144 1.076533 CGATGTGGTTCGCTAGCGTT 61.077 55.000 34.10 12.96 40.74 4.84
161 162 6.369890 AGCAGCAATATATCTTAACCATGTCG 59.630 38.462 0.00 0.00 0.00 4.35
210 216 4.433186 TCGTTGGTCAATTAGCATTTGG 57.567 40.909 0.00 0.00 35.03 3.28
220 246 2.767505 GAGTCAGGTTCGTTGGTCAAT 58.232 47.619 0.00 0.00 0.00 2.57
305 334 3.617538 GCGTGCGTGCTATCGGAC 61.618 66.667 9.89 9.89 45.76 4.79
310 339 0.671796 TATAGTGGCGTGCGTGCTAT 59.328 50.000 0.00 6.66 34.52 2.97
369 400 2.355115 GGATTGTGGCGGGGAAGT 59.645 61.111 0.00 0.00 0.00 3.01
377 408 4.114997 CGCGTTGGGGATTGTGGC 62.115 66.667 0.00 0.00 0.00 5.01
712 904 0.689055 ACCTACCACCGGAAGTTTCC 59.311 55.000 9.46 0.63 44.05 3.13
743 935 3.890250 TTTGGGGGCGGGGTAAAGC 62.890 63.158 0.00 0.00 0.00 3.51
744 936 1.228925 TTTTGGGGGCGGGGTAAAG 60.229 57.895 0.00 0.00 0.00 1.85
745 937 1.533513 GTTTTGGGGGCGGGGTAAA 60.534 57.895 0.00 0.00 0.00 2.01
746 938 2.117858 GTTTTGGGGGCGGGGTAA 59.882 61.111 0.00 0.00 0.00 2.85
747 939 3.982111 GGTTTTGGGGGCGGGGTA 61.982 66.667 0.00 0.00 0.00 3.69
784 999 1.248785 CCCCACGGAAAGAGAGTCGA 61.249 60.000 0.00 0.00 0.00 4.20
1100 1315 0.106015 AGGAAAAGGCTGTGCTTGGT 60.106 50.000 0.00 0.00 0.00 3.67
1101 1316 0.600057 GAGGAAAAGGCTGTGCTTGG 59.400 55.000 0.00 0.00 0.00 3.61
1164 1381 8.564574 GGCCTCGAATAAACAACAATAATGATA 58.435 33.333 0.00 0.00 0.00 2.15
1165 1382 7.285401 AGGCCTCGAATAAACAACAATAATGAT 59.715 33.333 0.00 0.00 0.00 2.45
1166 1383 6.601613 AGGCCTCGAATAAACAACAATAATGA 59.398 34.615 0.00 0.00 0.00 2.57
1219 1436 2.129555 AACAGAAGGCCTGCGGACAT 62.130 55.000 19.03 0.18 46.81 3.06
1221 1438 1.578206 GAAACAGAAGGCCTGCGGAC 61.578 60.000 19.03 4.92 46.81 4.79
1234 1451 6.785191 ACGAATAAATGCCATACAGAAACAG 58.215 36.000 0.00 0.00 0.00 3.16
1235 1452 6.372937 TGACGAATAAATGCCATACAGAAACA 59.627 34.615 0.00 0.00 0.00 2.83
1236 1453 6.781138 TGACGAATAAATGCCATACAGAAAC 58.219 36.000 0.00 0.00 0.00 2.78
1237 1454 6.993786 TGACGAATAAATGCCATACAGAAA 57.006 33.333 0.00 0.00 0.00 2.52
1238 1455 6.992123 AGATGACGAATAAATGCCATACAGAA 59.008 34.615 0.00 0.00 0.00 3.02
1239 1456 6.424812 CAGATGACGAATAAATGCCATACAGA 59.575 38.462 0.00 0.00 0.00 3.41
1240 1457 6.424812 TCAGATGACGAATAAATGCCATACAG 59.575 38.462 0.00 0.00 0.00 2.74
1246 1463 5.065218 ACAGTTCAGATGACGAATAAATGCC 59.935 40.000 0.00 0.00 0.00 4.40
1257 1474 7.171508 TGAATGACACTAAACAGTTCAGATGAC 59.828 37.037 0.00 0.00 0.00 3.06
1267 1484 4.999950 AGCCTTCTGAATGACACTAAACAG 59.000 41.667 0.00 0.00 0.00 3.16
1310 1528 1.119684 TATCATCCCACCACCGTGAG 58.880 55.000 0.00 0.00 43.14 3.51
1327 1545 5.171476 GGTCGTATTCTACATGCTGCATAT 58.829 41.667 15.78 6.75 0.00 1.78
1388 1764 2.781681 ACCAAATCGAGGTCGGAAAT 57.218 45.000 0.00 0.00 40.29 2.17
1424 1800 1.078426 AGCAAATTCCTCCCGGACG 60.078 57.895 0.73 0.00 39.60 4.79
1454 1830 4.342665 AGAACCCGGCTTTGAATTAACAAA 59.657 37.500 0.00 0.00 37.98 2.83
1455 1831 3.892588 AGAACCCGGCTTTGAATTAACAA 59.107 39.130 0.00 0.00 0.00 2.83
1456 1832 3.492337 AGAACCCGGCTTTGAATTAACA 58.508 40.909 0.00 0.00 0.00 2.41
1457 1833 4.217767 AGAAGAACCCGGCTTTGAATTAAC 59.782 41.667 0.00 0.00 0.00 2.01
1458 1834 4.403734 AGAAGAACCCGGCTTTGAATTAA 58.596 39.130 0.00 0.00 0.00 1.40
1459 1835 4.028993 AGAAGAACCCGGCTTTGAATTA 57.971 40.909 0.00 0.00 0.00 1.40
1460 1836 2.876581 AGAAGAACCCGGCTTTGAATT 58.123 42.857 0.00 0.00 0.00 2.17
1461 1837 2.558359 CAAGAAGAACCCGGCTTTGAAT 59.442 45.455 0.00 0.00 0.00 2.57
1462 1838 1.953686 CAAGAAGAACCCGGCTTTGAA 59.046 47.619 0.00 0.00 0.00 2.69
1463 1839 1.142060 TCAAGAAGAACCCGGCTTTGA 59.858 47.619 0.00 0.00 0.00 2.69
1464 1840 1.537202 CTCAAGAAGAACCCGGCTTTG 59.463 52.381 0.00 0.00 0.00 2.77
1465 1841 1.897560 CTCAAGAAGAACCCGGCTTT 58.102 50.000 0.00 0.00 0.00 3.51
1466 1842 0.606673 GCTCAAGAAGAACCCGGCTT 60.607 55.000 0.00 0.00 0.00 4.35
1467 1843 1.003233 GCTCAAGAAGAACCCGGCT 60.003 57.895 0.00 0.00 0.00 5.52
1468 1844 2.041115 GGCTCAAGAAGAACCCGGC 61.041 63.158 0.00 0.00 0.00 6.13
1469 1845 0.036875 AAGGCTCAAGAAGAACCCGG 59.963 55.000 0.00 0.00 32.64 5.73
1470 1846 1.443802 GAAGGCTCAAGAAGAACCCG 58.556 55.000 0.00 0.00 32.64 5.28
1471 1847 1.270893 ACGAAGGCTCAAGAAGAACCC 60.271 52.381 0.00 0.00 32.64 4.11
1472 1848 2.171341 ACGAAGGCTCAAGAAGAACC 57.829 50.000 0.00 0.00 32.37 3.62
1473 1849 3.394719 AGAACGAAGGCTCAAGAAGAAC 58.605 45.455 0.00 0.00 0.00 3.01
1474 1850 3.753294 AGAACGAAGGCTCAAGAAGAA 57.247 42.857 0.00 0.00 0.00 2.52
1475 1851 4.866508 TTAGAACGAAGGCTCAAGAAGA 57.133 40.909 0.00 0.00 0.00 2.87
1476 1852 5.924475 TTTTAGAACGAAGGCTCAAGAAG 57.076 39.130 0.00 0.00 0.00 2.85
1499 1875 5.461737 CCATCAACATACGCAACAACTTTTT 59.538 36.000 0.00 0.00 0.00 1.94
1500 1876 4.981674 CCATCAACATACGCAACAACTTTT 59.018 37.500 0.00 0.00 0.00 2.27
1518 1894 9.527157 TTTTCCTTTTATTACAGACATCCATCA 57.473 29.630 0.00 0.00 0.00 3.07
1533 1909 6.128309 GCATTCACGGCAATTTTTCCTTTTAT 60.128 34.615 0.00 0.00 0.00 1.40
1648 2024 3.454812 ACCACCTACAATCATCCAGGTAC 59.545 47.826 0.00 0.00 39.40 3.34
1697 2073 1.892474 TGGTAAGGTTCCTTGCAATGC 59.108 47.619 18.31 0.00 31.75 3.56
1716 2259 7.144661 TGTAACTATTGATTGCCAAAACTGTG 58.855 34.615 0.00 0.00 38.43 3.66
1717 2260 7.283625 TGTAACTATTGATTGCCAAAACTGT 57.716 32.000 0.00 0.00 38.43 3.55
1733 2276 5.736813 TGCCCGTCAGTAAAATGTAACTAT 58.263 37.500 0.00 0.00 0.00 2.12
1751 2294 4.157607 GGGTCCATGTAATGCCCG 57.842 61.111 0.00 0.00 44.97 6.13
1753 2296 2.193536 GGCGGGTCCATGTAATGCC 61.194 63.158 0.00 0.00 44.97 4.40
1769 2312 3.567397 TCTCCTGATGAACTAGTAGGGC 58.433 50.000 8.47 0.00 0.00 5.19
1874 2504 6.145209 CACACAGAAGTTCAGTTGAGATACTG 59.855 42.308 5.50 0.00 45.46 2.74
1956 2586 3.657610 TGGGATGTAGATGACCATGAGT 58.342 45.455 0.00 0.00 0.00 3.41
1959 2589 4.077108 CCAATGGGATGTAGATGACCATG 58.923 47.826 6.48 0.00 40.84 3.66
2076 2706 2.259917 TCACCATTCTTCAGAGGAGCA 58.740 47.619 0.00 0.00 0.00 4.26
2340 2971 9.994432 CTGTATGACTGAAATCAAACTATTTCC 57.006 33.333 6.81 0.00 42.63 3.13
2454 3085 4.294416 AGATAGTACAGTAGTGCTTGCG 57.706 45.455 0.00 0.00 41.21 4.85
2505 3136 1.577328 CTTGGCCAAGTAGCACACCG 61.577 60.000 33.46 8.43 33.87 4.94
2553 3184 2.288152 ACCAGCCATGCTAACAAAAACG 60.288 45.455 0.00 0.00 36.40 3.60
2691 3322 4.663120 TGGACAATATATAGCCCACTTGGT 59.337 41.667 0.00 0.00 36.04 3.67
2708 3339 9.383519 CTGAGAAGCTAAATTAAGTATGGACAA 57.616 33.333 0.00 0.00 0.00 3.18
2776 3407 7.653713 GCACAGCTGAGAAGCTAATTAAGTATA 59.346 37.037 23.35 0.00 44.30 1.47
2781 3412 4.393062 GTGCACAGCTGAGAAGCTAATTAA 59.607 41.667 23.35 0.00 44.30 1.40
2857 3488 6.983890 TGCCAAATGTTTTTAGTTTCTCCTTC 59.016 34.615 0.00 0.00 0.00 3.46
2905 3536 4.418392 CATGCTCATTAAAACAGGCTCAC 58.582 43.478 0.00 0.00 0.00 3.51
2918 3600 1.620524 CCCCAAGGTTCCATGCTCATT 60.621 52.381 0.00 0.00 0.00 2.57
2919 3601 0.032813 CCCCAAGGTTCCATGCTCAT 60.033 55.000 0.00 0.00 0.00 2.90
2920 3602 1.139498 TCCCCAAGGTTCCATGCTCA 61.139 55.000 0.00 0.00 0.00 4.26
2921 3603 0.259938 ATCCCCAAGGTTCCATGCTC 59.740 55.000 0.00 0.00 0.00 4.26
2922 3604 1.607225 TATCCCCAAGGTTCCATGCT 58.393 50.000 0.00 0.00 0.00 3.79
2923 3605 2.430694 GTTTATCCCCAAGGTTCCATGC 59.569 50.000 0.00 0.00 0.00 4.06
2924 3606 3.981212 AGTTTATCCCCAAGGTTCCATG 58.019 45.455 0.00 0.00 0.00 3.66
2925 3607 4.692523 AAGTTTATCCCCAAGGTTCCAT 57.307 40.909 0.00 0.00 0.00 3.41
2926 3608 5.630539 CGATAAGTTTATCCCCAAGGTTCCA 60.631 44.000 6.35 0.00 36.95 3.53
2927 3609 4.820173 CGATAAGTTTATCCCCAAGGTTCC 59.180 45.833 6.35 0.00 36.95 3.62
2928 3610 4.275196 GCGATAAGTTTATCCCCAAGGTTC 59.725 45.833 6.35 0.00 36.95 3.62
2929 3611 4.079958 AGCGATAAGTTTATCCCCAAGGTT 60.080 41.667 6.35 0.00 36.95 3.50
2930 3612 3.458487 AGCGATAAGTTTATCCCCAAGGT 59.542 43.478 6.35 0.00 36.95 3.50
2931 3613 4.086706 AGCGATAAGTTTATCCCCAAGG 57.913 45.455 6.35 0.00 36.95 3.61
2932 3614 5.733373 GCAAAGCGATAAGTTTATCCCCAAG 60.733 44.000 6.35 0.00 36.95 3.61
2933 3615 4.097286 GCAAAGCGATAAGTTTATCCCCAA 59.903 41.667 6.35 0.00 36.95 4.12
2941 3623 3.317993 ACAGTTGGCAAAGCGATAAGTTT 59.682 39.130 0.00 0.00 0.00 2.66
2946 3628 2.472695 AGACAGTTGGCAAAGCGATA 57.527 45.000 0.00 0.00 0.00 2.92
3053 3735 1.895798 TGCAACAACCAACCAGTGAAA 59.104 42.857 0.00 0.00 0.00 2.69
3074 3756 7.494625 ACACTCGATTAAAACTGAACAGAAGAA 59.505 33.333 8.87 0.00 0.00 2.52
3091 3773 4.153117 GCATTGAACTGAGAACACTCGATT 59.847 41.667 0.00 0.00 33.80 3.34
3093 3775 3.059884 GCATTGAACTGAGAACACTCGA 58.940 45.455 0.00 0.00 33.80 4.04
3094 3776 2.158449 GGCATTGAACTGAGAACACTCG 59.842 50.000 0.00 0.00 33.80 4.18
3095 3777 3.188048 CAGGCATTGAACTGAGAACACTC 59.812 47.826 3.50 0.00 36.86 3.51
3096 3778 3.144506 CAGGCATTGAACTGAGAACACT 58.855 45.455 3.50 0.00 36.86 3.55
3097 3779 3.141398 TCAGGCATTGAACTGAGAACAC 58.859 45.455 7.22 0.00 38.71 3.32
3100 3782 3.265221 AGGATCAGGCATTGAACTGAGAA 59.735 43.478 14.20 0.00 45.87 2.87
3101 3783 2.842496 AGGATCAGGCATTGAACTGAGA 59.158 45.455 14.20 0.00 45.87 3.27
3104 3786 5.359009 ACAATAAGGATCAGGCATTGAACTG 59.641 40.000 12.66 3.25 39.77 3.16
3105 3787 5.513233 ACAATAAGGATCAGGCATTGAACT 58.487 37.500 12.66 0.00 39.77 3.01
3106 3788 5.841957 ACAATAAGGATCAGGCATTGAAC 57.158 39.130 12.66 0.00 39.77 3.18
3108 3790 5.951148 TGAAACAATAAGGATCAGGCATTGA 59.049 36.000 12.66 0.00 40.85 2.57
3109 3791 6.038356 GTGAAACAATAAGGATCAGGCATTG 58.962 40.000 0.00 1.39 36.32 2.82
3110 3792 6.212888 GTGAAACAATAAGGATCAGGCATT 57.787 37.500 0.00 0.00 36.32 3.56
3111 3793 5.841957 GTGAAACAATAAGGATCAGGCAT 57.158 39.130 0.00 0.00 36.32 4.40
3256 3942 8.567104 GGAACAATAAAATGTGCAAAAAGGAAT 58.433 29.630 0.00 0.00 32.81 3.01
3318 4005 7.409465 GCAGGTTATCTTTAGTACATGCTAC 57.591 40.000 0.00 0.00 42.89 3.58
3333 4105 3.561725 GGCTTGTATGTCAGCAGGTTATC 59.438 47.826 0.00 0.00 0.00 1.75
3338 4113 2.119801 AAGGCTTGTATGTCAGCAGG 57.880 50.000 0.00 0.00 0.00 4.85
3461 4236 6.942976 TCCTTACTGATTCGACCAAAATACT 58.057 36.000 0.00 0.00 0.00 2.12
3478 4253 7.222161 ACCTCGAAACAAAACTATTCCTTACT 58.778 34.615 0.00 0.00 0.00 2.24
3481 4256 5.472478 GGACCTCGAAACAAAACTATTCCTT 59.528 40.000 0.00 0.00 0.00 3.36
3496 4272 3.659786 CAAAGTACATGTGGACCTCGAA 58.340 45.455 9.11 0.00 0.00 3.71
3567 4372 6.650807 CCAGACTGAAAAGATACAAGCACTTA 59.349 38.462 3.32 0.00 0.00 2.24
3676 4481 1.202568 TCAGATAGCACGCTCCCAATG 60.203 52.381 0.00 0.00 0.00 2.82
3694 4499 5.047872 TGTTAATGCGTACCAGAAGTAGTCA 60.048 40.000 0.00 0.00 0.00 3.41
3762 4567 3.003689 CGCAGAAGTTCCATTGTCAAAGT 59.996 43.478 0.00 0.00 0.00 2.66
3763 4568 3.558505 CGCAGAAGTTCCATTGTCAAAG 58.441 45.455 0.00 0.00 0.00 2.77
3772 4577 2.032528 CCCTGCGCAGAAGTTCCA 59.967 61.111 38.06 0.00 0.00 3.53
3898 4703 5.012664 TGGACAGAGCCAAAAATGTAGACTA 59.987 40.000 0.00 0.00 34.31 2.59
3931 4736 0.529378 GAGATGCAGGGCAAAACAGG 59.471 55.000 0.00 0.00 43.62 4.00
3998 4807 7.862372 AGTAGTTTTCAACAGTATTTGTGCATG 59.138 33.333 0.00 0.00 40.74 4.06
4013 4822 9.809096 TTTGCAAATGATAACAGTAGTTTTCAA 57.191 25.926 8.05 0.00 44.80 2.69
4015 4824 9.463443 ACTTTGCAAATGATAACAGTAGTTTTC 57.537 29.630 13.23 0.00 39.15 2.29
4035 4844 7.488150 GGTTACCAATAGCTATTTCAACTTTGC 59.512 37.037 16.46 5.05 0.00 3.68
4036 4845 7.973944 GGGTTACCAATAGCTATTTCAACTTTG 59.026 37.037 16.46 4.49 36.50 2.77
4057 4866 4.286297 CAGAGAACTGAACATGGGGTTA 57.714 45.455 0.00 0.00 46.03 2.85
4081 4897 2.303890 TGATCTTGAGCAGGCAAAGAGA 59.696 45.455 12.78 3.42 0.00 3.10
4103 4919 9.606631 AAAACAAATGGTAAATGCAAGTAAGAA 57.393 25.926 0.00 0.00 0.00 2.52
4118 4935 6.838382 AGGTAGACAGAGTAAAACAAATGGT 58.162 36.000 0.00 0.00 0.00 3.55
4143 4962 3.749665 AAATACCTGCAAAAGCAGCAA 57.250 38.095 11.76 2.64 42.17 3.91
4239 5058 2.693591 TCCAGATGTACACTCCGATTCC 59.306 50.000 0.00 0.00 0.00 3.01
4266 5086 5.240713 ACACTTCGTAACTAACCCTATCG 57.759 43.478 0.00 0.00 0.00 2.92
4298 5118 8.222637 AGTTGTCCTTAACTAACTAACCCAAAT 58.777 33.333 0.00 0.00 39.03 2.32
4355 5177 0.601558 CAGAGCTGCAGTGCCATTTT 59.398 50.000 16.64 0.00 0.00 1.82
4379 5219 3.973206 AAGGGGGCCGAAATTAAAAAG 57.027 42.857 0.00 0.00 0.00 2.27
4380 5220 4.591924 TGTAAAGGGGGCCGAAATTAAAAA 59.408 37.500 0.00 0.00 0.00 1.94
4381 5221 4.021280 GTGTAAAGGGGGCCGAAATTAAAA 60.021 41.667 0.00 0.00 0.00 1.52
4382 5222 3.510753 GTGTAAAGGGGGCCGAAATTAAA 59.489 43.478 0.00 0.00 0.00 1.52
4383 5223 3.090790 GTGTAAAGGGGGCCGAAATTAA 58.909 45.455 0.00 0.00 0.00 1.40
4384 5224 2.725637 GTGTAAAGGGGGCCGAAATTA 58.274 47.619 0.00 0.00 0.00 1.40
4385 5225 1.552578 GTGTAAAGGGGGCCGAAATT 58.447 50.000 0.00 0.00 0.00 1.82
4386 5226 0.678684 CGTGTAAAGGGGGCCGAAAT 60.679 55.000 0.00 0.00 0.00 2.17
4387 5227 1.302671 CGTGTAAAGGGGGCCGAAA 60.303 57.895 0.00 0.00 0.00 3.46
4388 5228 2.348243 CGTGTAAAGGGGGCCGAA 59.652 61.111 0.00 0.00 0.00 4.30
4389 5229 4.397832 GCGTGTAAAGGGGGCCGA 62.398 66.667 0.00 0.00 0.00 5.54
4390 5230 4.708386 TGCGTGTAAAGGGGGCCG 62.708 66.667 0.00 0.00 0.00 6.13
4391 5231 2.750237 CTGCGTGTAAAGGGGGCC 60.750 66.667 0.00 0.00 0.00 5.80
4392 5232 2.750237 CCTGCGTGTAAAGGGGGC 60.750 66.667 0.00 0.00 0.00 5.80
4393 5233 0.034477 ATTCCTGCGTGTAAAGGGGG 60.034 55.000 0.00 0.00 34.08 5.40
4394 5234 1.094785 CATTCCTGCGTGTAAAGGGG 58.905 55.000 0.00 0.00 34.08 4.79
4395 5235 1.094785 CCATTCCTGCGTGTAAAGGG 58.905 55.000 0.00 0.00 34.08 3.95
4396 5236 2.107950 TCCATTCCTGCGTGTAAAGG 57.892 50.000 0.00 0.00 34.65 3.11
4486 5334 9.197306 AGTTAAGAATTTACAGTTCCAAAGGTT 57.803 29.630 0.00 0.00 0.00 3.50
4510 5358 5.067674 TGACAGAGCATTTTGTAGCAAAAGT 59.932 36.000 11.77 4.44 0.00 2.66
4521 5369 4.024556 CAGAACGAGTTGACAGAGCATTTT 60.025 41.667 0.00 0.00 0.00 1.82
4537 5385 3.497297 TTTCAGCGCTATACAGAACGA 57.503 42.857 10.99 0.00 0.00 3.85
4541 5389 6.542852 GTTCAAAATTTCAGCGCTATACAGA 58.457 36.000 10.99 0.00 0.00 3.41
4611 5459 3.623060 CACACATCAAGTATGGTGCTACC 59.377 47.826 0.00 0.00 41.64 3.18
4612 5460 4.503910 TCACACATCAAGTATGGTGCTAC 58.496 43.478 0.00 0.00 41.64 3.58
4613 5461 4.817318 TCACACATCAAGTATGGTGCTA 57.183 40.909 0.00 0.00 41.64 3.49
5080 5928 4.645131 TTTTGGGTGCCGGCGCTA 62.645 61.111 36.63 24.12 35.36 4.26
5083 5931 4.656117 GGTTTTTGGGTGCCGGCG 62.656 66.667 23.90 0.00 0.00 6.46
5084 5932 3.230990 AGGTTTTTGGGTGCCGGC 61.231 61.111 22.73 22.73 0.00 6.13
5085 5933 2.733945 CAGGTTTTTGGGTGCCGG 59.266 61.111 0.00 0.00 0.00 6.13
5086 5934 1.175983 TAGCAGGTTTTTGGGTGCCG 61.176 55.000 0.00 0.00 36.54 5.69
5087 5935 1.204704 GATAGCAGGTTTTTGGGTGCC 59.795 52.381 0.00 0.00 36.54 5.01
5088 5936 1.204704 GGATAGCAGGTTTTTGGGTGC 59.795 52.381 0.00 0.00 36.10 5.01
5089 5937 2.755103 GAGGATAGCAGGTTTTTGGGTG 59.245 50.000 0.00 0.00 0.00 4.61
5090 5938 2.649816 AGAGGATAGCAGGTTTTTGGGT 59.350 45.455 0.00 0.00 0.00 4.51
5091 5939 3.372440 AGAGGATAGCAGGTTTTTGGG 57.628 47.619 0.00 0.00 0.00 4.12
5092 5940 4.524328 ACAAAGAGGATAGCAGGTTTTTGG 59.476 41.667 0.00 0.00 0.00 3.28
5093 5941 5.617751 CGACAAAGAGGATAGCAGGTTTTTG 60.618 44.000 0.00 0.00 0.00 2.44
5094 5942 4.455877 CGACAAAGAGGATAGCAGGTTTTT 59.544 41.667 0.00 0.00 0.00 1.94
5095 5943 4.003648 CGACAAAGAGGATAGCAGGTTTT 58.996 43.478 0.00 0.00 0.00 2.43
5096 5944 3.008049 ACGACAAAGAGGATAGCAGGTTT 59.992 43.478 0.00 0.00 0.00 3.27
5097 5945 2.567615 ACGACAAAGAGGATAGCAGGTT 59.432 45.455 0.00 0.00 0.00 3.50
5098 5946 2.166664 GACGACAAAGAGGATAGCAGGT 59.833 50.000 0.00 0.00 0.00 4.00
5099 5947 2.166459 TGACGACAAAGAGGATAGCAGG 59.834 50.000 0.00 0.00 0.00 4.85
5100 5948 3.510388 TGACGACAAAGAGGATAGCAG 57.490 47.619 0.00 0.00 0.00 4.24
5101 5949 4.183865 CAATGACGACAAAGAGGATAGCA 58.816 43.478 0.00 0.00 0.00 3.49
5102 5950 3.557595 CCAATGACGACAAAGAGGATAGC 59.442 47.826 0.00 0.00 0.00 2.97
5103 5951 5.011090 TCCAATGACGACAAAGAGGATAG 57.989 43.478 0.00 0.00 0.00 2.08
5104 5952 4.141937 CCTCCAATGACGACAAAGAGGATA 60.142 45.833 19.20 0.00 40.19 2.59
5105 5953 3.369892 CCTCCAATGACGACAAAGAGGAT 60.370 47.826 19.20 0.00 40.19 3.24
5106 5954 2.028112 CCTCCAATGACGACAAAGAGGA 60.028 50.000 19.20 11.11 40.19 3.71
5107 5955 2.028112 TCCTCCAATGACGACAAAGAGG 60.028 50.000 18.40 18.40 39.66 3.69
5108 5956 3.319137 TCCTCCAATGACGACAAAGAG 57.681 47.619 0.00 0.00 0.00 2.85
5109 5957 3.664107 CTTCCTCCAATGACGACAAAGA 58.336 45.455 0.00 0.00 0.00 2.52
5110 5958 2.160417 GCTTCCTCCAATGACGACAAAG 59.840 50.000 0.00 0.00 0.00 2.77
5111 5959 2.151202 GCTTCCTCCAATGACGACAAA 58.849 47.619 0.00 0.00 0.00 2.83
5112 5960 1.347707 AGCTTCCTCCAATGACGACAA 59.652 47.619 0.00 0.00 0.00 3.18
5113 5961 0.976641 AGCTTCCTCCAATGACGACA 59.023 50.000 0.00 0.00 0.00 4.35
5114 5962 1.363744 CAGCTTCCTCCAATGACGAC 58.636 55.000 0.00 0.00 0.00 4.34
5115 5963 0.391661 GCAGCTTCCTCCAATGACGA 60.392 55.000 0.00 0.00 0.00 4.20
5116 5964 1.699656 CGCAGCTTCCTCCAATGACG 61.700 60.000 0.00 0.00 0.00 4.35
5117 5965 1.372087 CCGCAGCTTCCTCCAATGAC 61.372 60.000 0.00 0.00 0.00 3.06
5118 5966 1.078214 CCGCAGCTTCCTCCAATGA 60.078 57.895 0.00 0.00 0.00 2.57
5119 5967 2.117156 CCCGCAGCTTCCTCCAATG 61.117 63.158 0.00 0.00 0.00 2.82
5120 5968 2.273449 CCCGCAGCTTCCTCCAAT 59.727 61.111 0.00 0.00 0.00 3.16
5121 5969 4.033776 CCCCGCAGCTTCCTCCAA 62.034 66.667 0.00 0.00 0.00 3.53
5123 5971 4.785453 CACCCCGCAGCTTCCTCC 62.785 72.222 0.00 0.00 0.00 4.30
5124 5972 3.254024 TTCACCCCGCAGCTTCCTC 62.254 63.158 0.00 0.00 0.00 3.71
5125 5973 3.249189 TTCACCCCGCAGCTTCCT 61.249 61.111 0.00 0.00 0.00 3.36
5126 5974 2.747855 CTTCACCCCGCAGCTTCC 60.748 66.667 0.00 0.00 0.00 3.46
5127 5975 3.435186 GCTTCACCCCGCAGCTTC 61.435 66.667 0.00 0.00 0.00 3.86
5131 5979 2.954684 TAGTGGCTTCACCCCGCAG 61.955 63.158 0.00 0.00 42.13 5.18
5132 5980 2.925706 TAGTGGCTTCACCCCGCA 60.926 61.111 0.00 0.00 42.13 5.69
5133 5981 2.436115 GTAGTGGCTTCACCCCGC 60.436 66.667 0.00 0.00 42.13 6.13
5134 5982 0.953960 GTTGTAGTGGCTTCACCCCG 60.954 60.000 0.00 0.00 42.13 5.73
5135 5983 0.400594 AGTTGTAGTGGCTTCACCCC 59.599 55.000 0.00 0.00 42.13 4.95
5136 5984 1.071699 TCAGTTGTAGTGGCTTCACCC 59.928 52.381 0.00 0.00 42.13 4.61
5137 5985 2.143925 GTCAGTTGTAGTGGCTTCACC 58.856 52.381 0.00 0.00 42.13 4.02
5138 5986 2.802816 CTGTCAGTTGTAGTGGCTTCAC 59.197 50.000 0.00 0.00 41.51 3.18
5139 5987 2.806745 GCTGTCAGTTGTAGTGGCTTCA 60.807 50.000 0.93 0.00 0.00 3.02
5140 5988 1.801178 GCTGTCAGTTGTAGTGGCTTC 59.199 52.381 0.93 0.00 0.00 3.86
5141 5989 1.873903 CGCTGTCAGTTGTAGTGGCTT 60.874 52.381 0.93 0.00 0.00 4.35
5142 5990 0.319900 CGCTGTCAGTTGTAGTGGCT 60.320 55.000 0.93 0.00 0.00 4.75
5143 5991 1.291877 CCGCTGTCAGTTGTAGTGGC 61.292 60.000 0.93 0.00 35.56 5.01
5144 5992 0.670546 CCCGCTGTCAGTTGTAGTGG 60.671 60.000 0.93 0.00 40.82 4.00
5145 5993 0.670546 CCCCGCTGTCAGTTGTAGTG 60.671 60.000 0.93 0.00 0.00 2.74
5146 5994 0.830444 TCCCCGCTGTCAGTTGTAGT 60.830 55.000 0.93 0.00 0.00 2.73
5147 5995 0.389948 GTCCCCGCTGTCAGTTGTAG 60.390 60.000 0.93 0.00 0.00 2.74
5148 5996 1.669440 GTCCCCGCTGTCAGTTGTA 59.331 57.895 0.93 0.00 0.00 2.41
5149 5997 2.426023 GTCCCCGCTGTCAGTTGT 59.574 61.111 0.93 0.00 0.00 3.32
5150 5998 2.358737 GGTCCCCGCTGTCAGTTG 60.359 66.667 0.93 0.00 0.00 3.16
5151 5999 1.705997 AAAGGTCCCCGCTGTCAGTT 61.706 55.000 0.93 0.00 0.00 3.16
5152 6000 0.834687 TAAAGGTCCCCGCTGTCAGT 60.835 55.000 0.93 0.00 0.00 3.41
5153 6001 0.541863 ATAAAGGTCCCCGCTGTCAG 59.458 55.000 0.00 0.00 0.00 3.51
5154 6002 0.988832 AATAAAGGTCCCCGCTGTCA 59.011 50.000 0.00 0.00 0.00 3.58
5155 6003 1.339727 ACAATAAAGGTCCCCGCTGTC 60.340 52.381 0.00 0.00 0.00 3.51
5156 6004 0.696501 ACAATAAAGGTCCCCGCTGT 59.303 50.000 0.00 0.00 0.00 4.40
5157 6005 1.379527 GACAATAAAGGTCCCCGCTG 58.620 55.000 0.00 0.00 0.00 5.18
5158 6006 0.107848 CGACAATAAAGGTCCCCGCT 60.108 55.000 0.00 0.00 31.55 5.52
5159 6007 0.392060 ACGACAATAAAGGTCCCCGC 60.392 55.000 0.00 0.00 31.55 6.13
5160 6008 1.365699 CACGACAATAAAGGTCCCCG 58.634 55.000 0.00 0.00 31.55 5.73
5161 6009 1.680860 CCCACGACAATAAAGGTCCCC 60.681 57.143 0.00 0.00 31.55 4.81
5162 6010 1.680860 CCCCACGACAATAAAGGTCCC 60.681 57.143 0.00 0.00 31.55 4.46
5163 6011 1.680860 CCCCCACGACAATAAAGGTCC 60.681 57.143 0.00 0.00 31.55 4.46
5164 6012 1.003928 ACCCCCACGACAATAAAGGTC 59.996 52.381 0.00 0.00 0.00 3.85
5165 6013 1.069775 ACCCCCACGACAATAAAGGT 58.930 50.000 0.00 0.00 0.00 3.50
5166 6014 1.459450 CACCCCCACGACAATAAAGG 58.541 55.000 0.00 0.00 0.00 3.11
5167 6015 1.459450 CCACCCCCACGACAATAAAG 58.541 55.000 0.00 0.00 0.00 1.85
5168 6016 0.609681 GCCACCCCCACGACAATAAA 60.610 55.000 0.00 0.00 0.00 1.40
5169 6017 1.001887 GCCACCCCCACGACAATAA 60.002 57.895 0.00 0.00 0.00 1.40
5170 6018 2.672295 GCCACCCCCACGACAATA 59.328 61.111 0.00 0.00 0.00 1.90
5171 6019 4.360405 GGCCACCCCCACGACAAT 62.360 66.667 0.00 0.00 0.00 2.71
5198 6046 2.360475 GTCACCAAGGGGCTCTGC 60.360 66.667 0.00 0.00 37.90 4.26
5199 6047 2.046892 CGTCACCAAGGGGCTCTG 60.047 66.667 0.00 0.00 37.90 3.35
5200 6048 3.322466 CCGTCACCAAGGGGCTCT 61.322 66.667 0.00 0.00 37.90 4.09
5201 6049 3.192103 AACCGTCACCAAGGGGCTC 62.192 63.158 0.00 0.00 37.22 4.70
5202 6050 3.175710 AACCGTCACCAAGGGGCT 61.176 61.111 0.00 0.00 37.22 5.19
5203 6051 2.983592 CAACCGTCACCAAGGGGC 60.984 66.667 0.00 0.00 37.22 5.80


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.