Multiple sequence alignment - TraesCS2D01G517300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G517300 chr2D 100.000 2732 0 0 1 2732 608373818 608376549 0.000000e+00 5046.0
1 TraesCS2D01G517300 chr2D 83.741 695 67 24 918 1597 608398465 608399128 1.390000e-172 616.0
2 TraesCS2D01G517300 chr2D 82.424 165 10 8 2060 2205 608408594 608408758 2.860000e-25 126.0
3 TraesCS2D01G517300 chr2D 84.426 122 11 5 2089 2205 608268107 608268225 2.220000e-21 113.0
4 TraesCS2D01G517300 chr2D 97.015 67 2 0 1531 1597 608407324 608407390 2.220000e-21 113.0
5 TraesCS2D01G517300 chr2D 93.243 74 5 0 849 922 608266015 608266088 2.880000e-20 110.0
6 TraesCS2D01G517300 chr2D 93.243 74 4 1 1526 1598 608408493 608408566 1.030000e-19 108.0
7 TraesCS2D01G517300 chr2D 87.654 81 3 6 2296 2372 608367544 608367621 1.350000e-13 87.9
8 TraesCS2D01G517300 chr2D 93.878 49 2 1 2367 2415 608374315 608374362 3.770000e-09 73.1
9 TraesCS2D01G517300 chr2D 93.878 49 2 1 498 545 608376184 608376232 3.770000e-09 73.1
10 TraesCS2D01G517300 chr2B 93.299 1358 54 11 662 1991 741498234 741499582 0.000000e+00 1969.0
11 TraesCS2D01G517300 chr2B 86.880 968 72 22 662 1597 741717765 741718709 0.000000e+00 1033.0
12 TraesCS2D01G517300 chr2B 83.631 336 43 8 1011 1334 741475501 741475836 3.420000e-79 305.0
13 TraesCS2D01G517300 chr2B 90.558 233 11 4 100 323 741717279 741717509 5.720000e-77 298.0
14 TraesCS2D01G517300 chr2B 90.213 235 12 6 101 326 741497649 741497881 2.060000e-76 296.0
15 TraesCS2D01G517300 chr2B 85.662 272 16 8 2237 2497 741499798 741500057 5.800000e-67 265.0
16 TraesCS2D01G517300 chr2B 94.964 139 7 0 406 544 741497884 741498022 4.580000e-53 219.0
17 TraesCS2D01G517300 chr2B 95.556 135 6 0 406 540 741717519 741717653 1.650000e-52 217.0
18 TraesCS2D01G517300 chr2B 86.127 173 9 6 2059 2216 741718749 741718921 3.620000e-39 172.0
19 TraesCS2D01G517300 chr2B 93.220 118 2 2 2092 2205 741499591 741499706 4.680000e-38 169.0
20 TraesCS2D01G517300 chr2B 91.753 97 6 1 1 97 741497454 741497548 1.710000e-27 134.0
21 TraesCS2D01G517300 chr2B 88.660 97 8 2 1 97 741717085 741717178 6.180000e-22 115.0
22 TraesCS2D01G517300 chr2B 87.629 97 10 1 1 97 741491093 741491187 8.000000e-21 111.0
23 TraesCS2D01G517300 chr2B 90.541 74 2 3 2368 2437 741497977 741498049 2.900000e-15 93.5
24 TraesCS2D01G517300 chr2B 87.342 79 3 5 2296 2370 741477049 741477124 1.740000e-12 84.2
25 TraesCS2D01G517300 chr2B 97.674 43 1 0 551 593 741498051 741498093 1.050000e-09 75.0
26 TraesCS2D01G517300 chr2B 93.878 49 2 1 498 545 741499929 741499977 3.770000e-09 73.1
27 TraesCS2D01G517300 chr2B 95.349 43 2 0 2367 2409 741717611 741717653 4.880000e-08 69.4
28 TraesCS2D01G517300 chr2A 84.772 591 56 17 943 1527 739850430 739850992 1.840000e-156 562.0
29 TraesCS2D01G517300 chr2A 85.909 220 11 8 662 875 739850202 739850407 1.650000e-52 217.0
30 TraesCS2D01G517300 chr2A 96.629 89 3 0 100 188 739849919 739850007 6.100000e-32 148.0
31 TraesCS2D01G517300 chr2A 95.604 91 4 0 7 97 739849732 739849822 2.190000e-31 147.0
32 TraesCS2D01G517300 chr2A 85.821 134 7 5 100 225 739860193 739860322 6.140000e-27 132.0
33 TraesCS2D01G517300 chr2A 92.208 77 5 1 2641 2717 452887205 452887280 1.030000e-19 108.0
34 TraesCS2D01G517300 chr2A 93.243 74 4 1 2644 2717 594643485 594643413 1.030000e-19 108.0
35 TraesCS2D01G517300 chr2A 92.208 77 5 1 2641 2717 628423229 628423304 1.030000e-19 108.0
36 TraesCS2D01G517300 chr2A 94.030 67 4 0 1532 1598 739920196 739920130 4.810000e-18 102.0
37 TraesCS2D01G517300 chr2A 94.828 58 1 1 1542 1597 739853724 739853781 3.750000e-14 89.8
38 TraesCS2D01G517300 chr4A 88.717 452 31 7 1600 2040 74605122 74604680 4.000000e-148 534.0
39 TraesCS2D01G517300 chr4A 86.253 451 42 5 1600 2039 213403714 213403273 3.180000e-129 472.0
40 TraesCS2D01G517300 chr4A 90.123 81 6 2 2641 2721 2302279 2302357 1.340000e-18 104.0
41 TraesCS2D01G517300 chr7D 87.805 451 35 4 1600 2039 198617151 198616710 6.750000e-141 510.0
42 TraesCS2D01G517300 chr6D 87.638 453 36 5 1600 2041 428458586 428458143 2.430000e-140 508.0
43 TraesCS2D01G517300 chr6D 92.500 80 5 1 328 406 462439503 462439582 2.220000e-21 113.0
44 TraesCS2D01G517300 chr3B 87.611 452 36 8 1600 2040 462887537 462887095 8.730000e-140 507.0
45 TraesCS2D01G517300 chr3B 91.358 81 7 0 328 408 51027180 51027100 8.000000e-21 111.0
46 TraesCS2D01G517300 chr7B 87.361 451 36 5 1600 2039 259715239 259714799 5.250000e-137 497.0
47 TraesCS2D01G517300 chr3D 90.040 251 16 3 1792 2042 55752226 55752467 1.580000e-82 316.0
48 TraesCS2D01G517300 chr3D 86.916 214 17 1 1600 1802 55749933 55750146 2.120000e-56 230.0
49 TraesCS2D01G517300 chr3D 97.143 70 1 1 2641 2709 315746925 315746994 1.720000e-22 117.0
50 TraesCS2D01G517300 chr1D 90.411 146 14 0 1861 2006 59965078 59965223 2.780000e-45 193.0
51 TraesCS2D01G517300 chr7A 92.593 81 6 0 328 408 181833288 181833208 1.720000e-22 117.0
52 TraesCS2D01G517300 chr7A 91.250 80 7 0 328 407 4803653 4803574 2.880000e-20 110.0
53 TraesCS2D01G517300 chr7A 92.208 77 5 1 2636 2712 236411926 236411851 1.030000e-19 108.0
54 TraesCS2D01G517300 chr7A 90.476 84 5 3 2634 2717 311115722 311115802 1.030000e-19 108.0
55 TraesCS2D01G517300 chr5D 97.143 70 1 1 2644 2712 530933888 530933819 1.720000e-22 117.0
56 TraesCS2D01G517300 chr4D 89.130 92 9 1 328 418 484740199 484740108 2.220000e-21 113.0
57 TraesCS2D01G517300 chr3A 89.773 88 9 0 319 406 750510170 750510083 2.220000e-21 113.0
58 TraesCS2D01G517300 chr6B 89.655 87 9 0 321 407 466966526 466966440 8.000000e-21 111.0
59 TraesCS2D01G517300 chr6B 88.764 89 10 0 320 408 552761659 552761571 2.880000e-20 110.0
60 TraesCS2D01G517300 chr6A 87.629 97 11 1 310 406 337133269 337133174 8.000000e-21 111.0
61 TraesCS2D01G517300 chr6A 93.333 75 4 1 2635 2709 498668409 498668482 2.880000e-20 110.0
62 TraesCS2D01G517300 chr5B 100.000 33 0 0 861 893 37698815 37698847 8.170000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G517300 chr2D 608373818 608376549 2731 False 1730.733333 5046 95.918667 1 2732 3 chr2D.!!$F4 2731
1 TraesCS2D01G517300 chr2D 608398465 608399128 663 False 616.000000 616 83.741000 918 1597 1 chr2D.!!$F2 679
2 TraesCS2D01G517300 chr2B 741497454 741500057 2603 False 365.955556 1969 92.356000 1 2497 9 chr2B.!!$F3 2496
3 TraesCS2D01G517300 chr2B 741717085 741718921 1836 False 317.400000 1033 90.521667 1 2409 6 chr2B.!!$F4 2408
4 TraesCS2D01G517300 chr2A 739849732 739853781 4049 False 232.760000 562 91.548400 7 1597 5 chr2A.!!$F4 1590
5 TraesCS2D01G517300 chr3D 55749933 55752467 2534 False 273.000000 316 88.478000 1600 2042 2 chr3D.!!$F2 442

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
604 738 0.611618 ATGCATGCCAAAAGGACCGA 60.612 50.0 16.68 0.0 0.0 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2531 7737 0.105964 ACAGGTACAAGCACGCTCAA 59.894 50.0 0.0 0.0 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
146 245 5.652452 ACTAGGCCATCAAGACCAAAAATAC 59.348 40.000 5.01 0.00 0.00 1.89
242 349 2.200373 ATTAAGGTCGTGCTGCCTTT 57.800 45.000 0.00 0.00 41.93 3.11
278 386 8.928270 ACTAAGACATCCAACGTAGAAATAAG 57.072 34.615 0.00 0.00 0.00 1.73
379 491 7.877097 AGATCACTACTTTAATGATCCAGATGC 59.123 37.037 10.87 0.00 46.61 3.91
380 492 7.129457 TCACTACTTTAATGATCCAGATGCT 57.871 36.000 0.00 0.00 0.00 3.79
381 493 7.568349 TCACTACTTTAATGATCCAGATGCTT 58.432 34.615 0.00 0.00 0.00 3.91
382 494 8.049117 TCACTACTTTAATGATCCAGATGCTTT 58.951 33.333 0.00 0.00 0.00 3.51
383 495 8.680903 CACTACTTTAATGATCCAGATGCTTTT 58.319 33.333 0.00 0.00 0.00 2.27
384 496 9.905713 ACTACTTTAATGATCCAGATGCTTTTA 57.094 29.630 0.00 0.00 0.00 1.52
397 509 8.836413 TCCAGATGCTTTTATATTTCTTTACGG 58.164 33.333 0.00 0.00 0.00 4.02
398 510 8.836413 CCAGATGCTTTTATATTTCTTTACGGA 58.164 33.333 0.00 0.00 0.00 4.69
399 511 9.869844 CAGATGCTTTTATATTTCTTTACGGAG 57.130 33.333 0.00 0.00 0.00 4.63
400 512 9.057089 AGATGCTTTTATATTTCTTTACGGAGG 57.943 33.333 0.00 0.00 0.00 4.30
401 513 7.562454 TGCTTTTATATTTCTTTACGGAGGG 57.438 36.000 0.00 0.00 0.00 4.30
402 514 7.340256 TGCTTTTATATTTCTTTACGGAGGGA 58.660 34.615 0.00 0.00 0.00 4.20
403 515 7.497909 TGCTTTTATATTTCTTTACGGAGGGAG 59.502 37.037 0.00 0.00 0.00 4.30
404 516 7.498239 GCTTTTATATTTCTTTACGGAGGGAGT 59.502 37.037 0.00 0.00 0.00 3.85
407 519 8.773033 TTATATTTCTTTACGGAGGGAGTACT 57.227 34.615 0.00 0.00 0.00 2.73
482 594 1.608055 TGGATGAAGCAACAGTGGTG 58.392 50.000 2.98 2.98 35.09 4.17
534 646 0.819259 AATGGAATGGCCGGTCGATG 60.819 55.000 0.00 0.00 40.66 3.84
544 656 2.065993 CCGGTCGATGGCTATTACTG 57.934 55.000 0.00 0.00 0.00 2.74
545 657 1.340248 CCGGTCGATGGCTATTACTGT 59.660 52.381 0.00 0.00 0.00 3.55
593 727 0.666913 CTGTAGCCTTCATGCATGCC 59.333 55.000 22.25 9.69 0.00 4.40
604 738 0.611618 ATGCATGCCAAAAGGACCGA 60.612 50.000 16.68 0.00 0.00 4.69
619 800 1.854743 GACCGATCACATCACATGTCG 59.145 52.381 0.00 0.00 42.70 4.35
653 842 2.427095 GGAATTAGCGTTGCCAAAGGAT 59.573 45.455 0.00 0.00 0.00 3.24
664 885 2.158971 TGCCAAAGGATCGATCGATTCA 60.159 45.455 32.53 17.90 34.60 2.57
693 914 2.665000 CAGCCCCATCGTCACTGT 59.335 61.111 0.00 0.00 0.00 3.55
759 985 1.480219 CGTAGTCGCTTTCCATCGCC 61.480 60.000 0.00 0.00 0.00 5.54
783 1013 1.291877 CGCAGCTGCTCTTAAACCGT 61.292 55.000 34.22 0.00 39.32 4.83
944 1189 9.618890 TTCTTCTTCTTCTTCTTGATTCTTTCA 57.381 29.630 0.00 0.00 0.00 2.69
1099 1351 1.488705 CCACTACCAACTCCCCTGCA 61.489 60.000 0.00 0.00 0.00 4.41
1100 1352 0.036010 CACTACCAACTCCCCTGCAG 60.036 60.000 6.78 6.78 0.00 4.41
1101 1353 1.078143 CTACCAACTCCCCTGCAGC 60.078 63.158 8.66 0.00 0.00 5.25
1119 1371 3.606687 CAGCGTAATTACCCCTTGAACT 58.393 45.455 10.01 0.00 0.00 3.01
1135 1387 5.400066 TTGAACTCTGTACATTCCGATCA 57.600 39.130 0.00 0.00 0.00 2.92
1196 1454 2.433145 CGTCGTCTGCATGCAGGT 60.433 61.111 39.72 0.00 43.75 4.00
1200 1458 0.460811 TCGTCTGCATGCAGGTCATC 60.461 55.000 39.72 24.79 43.75 2.92
1254 1512 1.303317 CACCAAGGCCGCCTACTTT 60.303 57.895 13.73 0.00 31.13 2.66
1276 1534 1.908483 GCCCTCTGGATCGGAACTT 59.092 57.895 0.00 0.00 0.00 2.66
1598 4620 7.094933 GCTGCATGAGATTATGTGATTATGTCA 60.095 37.037 0.00 0.00 0.00 3.58
1682 4715 2.295909 TCCATTGCTTGTTTGCAGGTAC 59.704 45.455 0.00 0.00 44.27 3.34
1778 4815 4.999311 TGTGTAGCAATGCATATGATCTCC 59.001 41.667 8.35 0.00 0.00 3.71
1786 4823 2.374170 TGCATATGATCTCCCACAGCAT 59.626 45.455 6.97 0.00 0.00 3.79
1853 6980 9.148104 GTTTTATCGAGTACAAAGTTGTATCCT 57.852 33.333 7.14 1.31 44.59 3.24
1854 6981 8.697846 TTTATCGAGTACAAAGTTGTATCCTG 57.302 34.615 7.14 0.00 44.59 3.86
1855 6982 5.717078 TCGAGTACAAAGTTGTATCCTGT 57.283 39.130 7.14 0.00 44.59 4.00
1856 6983 6.822667 TCGAGTACAAAGTTGTATCCTGTA 57.177 37.500 7.14 0.00 44.59 2.74
1857 6984 7.400599 TCGAGTACAAAGTTGTATCCTGTAT 57.599 36.000 7.14 0.00 44.59 2.29
1858 6985 7.833786 TCGAGTACAAAGTTGTATCCTGTATT 58.166 34.615 7.14 0.00 44.59 1.89
1859 6986 7.972277 TCGAGTACAAAGTTGTATCCTGTATTC 59.028 37.037 7.14 0.00 44.59 1.75
1860 6987 7.222224 CGAGTACAAAGTTGTATCCTGTATTCC 59.778 40.741 7.14 0.00 44.59 3.01
1903 7030 4.013728 TGTTGCTCATAAATTAGCGGGTT 58.986 39.130 0.00 0.00 41.77 4.11
1921 7048 3.131396 GGTTATGGTGCGTCTATGGAAG 58.869 50.000 0.00 0.00 0.00 3.46
1975 7102 6.536941 GGTTCCAGACTTTGTAATCTCTGATC 59.463 42.308 0.00 0.00 33.30 2.92
1983 7110 4.862902 TGTAATCTCTGATCTAGCCAGC 57.137 45.455 6.99 0.00 0.00 4.85
1995 7122 2.159240 TCTAGCCAGCGAGTATGTTGTG 60.159 50.000 0.00 0.00 0.00 3.33
2019 7146 5.694995 CCAGGTGGTTAATGGAATCTATGT 58.305 41.667 0.00 0.00 36.09 2.29
2061 7188 5.413309 AAAAGAGAGGTACTGATGAGTGG 57.587 43.478 0.00 0.00 41.55 4.00
2062 7189 3.748645 AGAGAGGTACTGATGAGTGGT 57.251 47.619 0.00 0.00 41.55 4.16
2063 7190 4.054359 AGAGAGGTACTGATGAGTGGTT 57.946 45.455 0.00 0.00 41.55 3.67
2064 7191 4.020543 AGAGAGGTACTGATGAGTGGTTC 58.979 47.826 0.00 0.00 41.55 3.62
2065 7192 4.020543 GAGAGGTACTGATGAGTGGTTCT 58.979 47.826 0.00 0.00 41.55 3.01
2066 7193 5.044772 AGAGAGGTACTGATGAGTGGTTCTA 60.045 44.000 0.00 0.00 41.55 2.10
2067 7194 5.197451 AGAGGTACTGATGAGTGGTTCTAG 58.803 45.833 0.00 0.00 41.55 2.43
2068 7195 3.702045 AGGTACTGATGAGTGGTTCTAGC 59.298 47.826 0.00 0.00 37.18 3.42
2069 7196 3.702045 GGTACTGATGAGTGGTTCTAGCT 59.298 47.826 0.00 0.00 33.21 3.32
2070 7197 4.888239 GGTACTGATGAGTGGTTCTAGCTA 59.112 45.833 0.00 0.00 33.21 3.32
2071 7198 5.360144 GGTACTGATGAGTGGTTCTAGCTAA 59.640 44.000 0.00 0.00 33.21 3.09
2072 7199 5.590530 ACTGATGAGTGGTTCTAGCTAAG 57.409 43.478 0.00 0.00 0.00 2.18
2073 7200 4.404073 ACTGATGAGTGGTTCTAGCTAAGG 59.596 45.833 0.00 0.00 0.00 2.69
2074 7201 4.610333 TGATGAGTGGTTCTAGCTAAGGA 58.390 43.478 0.00 0.00 0.00 3.36
2075 7202 5.023452 TGATGAGTGGTTCTAGCTAAGGAA 58.977 41.667 0.00 0.00 0.00 3.36
2076 7203 5.127845 TGATGAGTGGTTCTAGCTAAGGAAG 59.872 44.000 0.00 0.00 0.00 3.46
2077 7204 4.673968 TGAGTGGTTCTAGCTAAGGAAGA 58.326 43.478 0.00 0.00 0.00 2.87
2078 7205 5.084519 TGAGTGGTTCTAGCTAAGGAAGAA 58.915 41.667 0.00 0.00 0.00 2.52
2079 7206 5.721960 TGAGTGGTTCTAGCTAAGGAAGAAT 59.278 40.000 0.00 0.00 32.26 2.40
2080 7207 6.895756 TGAGTGGTTCTAGCTAAGGAAGAATA 59.104 38.462 0.00 0.00 32.26 1.75
2081 7208 7.068839 TGAGTGGTTCTAGCTAAGGAAGAATAG 59.931 40.741 0.00 0.00 32.26 1.73
2082 7209 7.126733 AGTGGTTCTAGCTAAGGAAGAATAGA 58.873 38.462 0.00 0.00 32.26 1.98
2083 7210 7.068962 AGTGGTTCTAGCTAAGGAAGAATAGAC 59.931 40.741 0.00 0.00 32.26 2.59
2084 7211 6.324254 TGGTTCTAGCTAAGGAAGAATAGACC 59.676 42.308 0.00 0.00 32.26 3.85
2085 7212 6.551975 GGTTCTAGCTAAGGAAGAATAGACCT 59.448 42.308 0.00 0.00 32.26 3.85
2086 7213 7.724951 GGTTCTAGCTAAGGAAGAATAGACCTA 59.275 40.741 0.00 0.00 32.26 3.08
2087 7214 9.304335 GTTCTAGCTAAGGAAGAATAGACCTAT 57.696 37.037 0.00 0.00 32.26 2.57
2090 7217 7.712204 AGCTAAGGAAGAATAGACCTATAGC 57.288 40.000 1.96 1.96 38.74 2.97
2148 7275 5.535030 TGTGTGTGTGAATCTACTAGTGTCT 59.465 40.000 5.39 0.00 0.00 3.41
2206 7341 4.554586 CGTGTTGATCATTGTTTTCCATCG 59.445 41.667 0.00 0.00 0.00 3.84
2221 7395 3.665675 ATCGGGGTTCAGCTGCGTC 62.666 63.158 9.47 1.34 0.00 5.19
2234 7408 0.368907 CTGCGTCGGTTATTTGGTCG 59.631 55.000 0.00 0.00 0.00 4.79
2250 7445 2.232941 TGGTCGGTTACATGTTCCTCTC 59.767 50.000 2.30 1.35 0.00 3.20
2299 7499 3.948719 GGCTCCGTTGGGTGTGGA 61.949 66.667 0.00 0.00 33.83 4.02
2321 7521 2.829003 CATGGCTCTGGCTGGCTG 60.829 66.667 2.00 1.75 38.73 4.85
2322 7522 4.124943 ATGGCTCTGGCTGGCTGG 62.125 66.667 8.19 1.10 38.73 4.85
2324 7524 4.357279 GGCTCTGGCTGGCTGGTT 62.357 66.667 8.19 0.00 38.73 3.67
2352 7552 1.512996 CCGTGCAGATCCATCATGGC 61.513 60.000 0.00 0.00 37.47 4.40
2371 7571 3.413861 GCTGCGTGCACATGACGA 61.414 61.111 18.64 0.00 42.31 4.20
2394 7594 2.340337 GAAGCACACAAATGGAATGGC 58.660 47.619 0.00 0.00 0.00 4.40
2424 7630 2.565841 GCTATTAGCTGGGGTCAGTTG 58.434 52.381 8.47 0.00 42.78 3.16
2456 7662 4.868116 CGGCCGGGTAACATGGGG 62.868 72.222 20.10 0.00 39.74 4.96
2457 7663 3.413300 GGCCGGGTAACATGGGGA 61.413 66.667 2.18 0.00 39.74 4.81
2458 7664 2.763645 GGCCGGGTAACATGGGGAT 61.764 63.158 2.18 0.00 39.74 3.85
2459 7665 1.228154 GCCGGGTAACATGGGGATC 60.228 63.158 2.18 0.00 39.74 3.36
2460 7666 1.990160 GCCGGGTAACATGGGGATCA 61.990 60.000 2.18 0.00 39.74 2.92
2463 7669 0.550914 GGGTAACATGGGGATCAGCA 59.449 55.000 0.00 0.00 39.74 4.41
2497 7703 5.220416 GCAGTAGTAGAAAATTACTGTGCGG 60.220 44.000 11.24 0.00 43.79 5.69
2498 7704 4.868734 AGTAGTAGAAAATTACTGTGCGGC 59.131 41.667 0.00 0.00 35.57 6.53
2499 7705 3.939066 AGTAGAAAATTACTGTGCGGCT 58.061 40.909 0.00 0.00 32.78 5.52
2500 7706 5.080969 AGTAGAAAATTACTGTGCGGCTA 57.919 39.130 0.00 0.00 32.78 3.93
2501 7707 5.484715 AGTAGAAAATTACTGTGCGGCTAA 58.515 37.500 0.00 0.00 32.78 3.09
2502 7708 6.113411 AGTAGAAAATTACTGTGCGGCTAAT 58.887 36.000 0.00 0.00 32.78 1.73
2503 7709 5.897377 AGAAAATTACTGTGCGGCTAATT 57.103 34.783 0.00 0.38 0.00 1.40
2504 7710 5.880341 AGAAAATTACTGTGCGGCTAATTC 58.120 37.500 0.00 0.00 0.00 2.17
2505 7711 5.414454 AGAAAATTACTGTGCGGCTAATTCA 59.586 36.000 0.00 0.00 0.00 2.57
2506 7712 5.637006 AAATTACTGTGCGGCTAATTCAA 57.363 34.783 0.00 0.00 0.00 2.69
2507 7713 5.637006 AATTACTGTGCGGCTAATTCAAA 57.363 34.783 0.00 0.00 0.00 2.69
2508 7714 5.835113 ATTACTGTGCGGCTAATTCAAAT 57.165 34.783 0.00 0.00 0.00 2.32
2509 7715 3.492421 ACTGTGCGGCTAATTCAAATG 57.508 42.857 0.00 0.00 0.00 2.32
2510 7716 3.081061 ACTGTGCGGCTAATTCAAATGA 58.919 40.909 0.00 0.00 0.00 2.57
2511 7717 3.119849 ACTGTGCGGCTAATTCAAATGAC 60.120 43.478 0.00 0.00 0.00 3.06
2512 7718 2.163412 TGTGCGGCTAATTCAAATGACC 59.837 45.455 0.00 0.00 0.00 4.02
2513 7719 2.423538 GTGCGGCTAATTCAAATGACCT 59.576 45.455 0.00 0.00 0.00 3.85
2514 7720 3.625764 GTGCGGCTAATTCAAATGACCTA 59.374 43.478 0.00 0.00 0.00 3.08
2515 7721 3.876914 TGCGGCTAATTCAAATGACCTAG 59.123 43.478 0.00 0.00 0.00 3.02
2516 7722 3.304057 GCGGCTAATTCAAATGACCTAGC 60.304 47.826 11.75 11.75 35.39 3.42
2517 7723 4.130118 CGGCTAATTCAAATGACCTAGCT 58.870 43.478 16.54 0.00 35.96 3.32
2518 7724 4.576463 CGGCTAATTCAAATGACCTAGCTT 59.424 41.667 16.54 0.00 35.96 3.74
2519 7725 5.504665 CGGCTAATTCAAATGACCTAGCTTG 60.505 44.000 16.54 0.00 35.96 4.01
2520 7726 5.277047 GCTAATTCAAATGACCTAGCTTGC 58.723 41.667 12.47 0.00 34.27 4.01
2521 7727 5.067023 GCTAATTCAAATGACCTAGCTTGCT 59.933 40.000 12.47 0.00 34.27 3.91
2522 7728 6.260936 GCTAATTCAAATGACCTAGCTTGCTA 59.739 38.462 12.47 2.19 34.27 3.49
2523 7729 6.442513 AATTCAAATGACCTAGCTTGCTAC 57.557 37.500 0.00 0.00 0.00 3.58
2524 7730 4.826274 TCAAATGACCTAGCTTGCTACT 57.174 40.909 0.00 0.00 0.00 2.57
2525 7731 5.932619 TCAAATGACCTAGCTTGCTACTA 57.067 39.130 0.00 0.00 0.00 1.82
2526 7732 5.907207 TCAAATGACCTAGCTTGCTACTAG 58.093 41.667 0.00 0.00 37.46 2.57
2535 7741 6.654793 CTAGCTTGCTACTAGGTTTTTGAG 57.345 41.667 0.00 0.00 34.66 3.02
2536 7742 3.753797 AGCTTGCTACTAGGTTTTTGAGC 59.246 43.478 0.00 0.00 0.00 4.26
2537 7743 3.424962 GCTTGCTACTAGGTTTTTGAGCG 60.425 47.826 0.00 0.00 32.53 5.03
2538 7744 3.396260 TGCTACTAGGTTTTTGAGCGT 57.604 42.857 0.00 0.00 32.53 5.07
2539 7745 3.064207 TGCTACTAGGTTTTTGAGCGTG 58.936 45.455 0.00 0.00 32.53 5.34
2540 7746 2.159693 GCTACTAGGTTTTTGAGCGTGC 60.160 50.000 0.00 0.00 0.00 5.34
2541 7747 2.256117 ACTAGGTTTTTGAGCGTGCT 57.744 45.000 0.00 0.00 0.00 4.40
2542 7748 2.572290 ACTAGGTTTTTGAGCGTGCTT 58.428 42.857 0.00 0.00 0.00 3.91
2543 7749 2.290641 ACTAGGTTTTTGAGCGTGCTTG 59.709 45.455 0.00 0.00 0.00 4.01
2544 7750 1.102978 AGGTTTTTGAGCGTGCTTGT 58.897 45.000 0.00 0.00 0.00 3.16
2545 7751 2.294074 AGGTTTTTGAGCGTGCTTGTA 58.706 42.857 0.00 0.00 0.00 2.41
2546 7752 2.032924 AGGTTTTTGAGCGTGCTTGTAC 59.967 45.455 0.00 0.00 0.00 2.90
2547 7753 2.381589 GTTTTTGAGCGTGCTTGTACC 58.618 47.619 0.00 0.00 0.00 3.34
2548 7754 1.961793 TTTTGAGCGTGCTTGTACCT 58.038 45.000 0.00 0.00 0.00 3.08
2549 7755 1.225855 TTTGAGCGTGCTTGTACCTG 58.774 50.000 0.00 0.00 0.00 4.00
2550 7756 0.105964 TTGAGCGTGCTTGTACCTGT 59.894 50.000 0.00 0.00 0.00 4.00
2551 7757 0.599991 TGAGCGTGCTTGTACCTGTG 60.600 55.000 0.00 0.00 0.00 3.66
2552 7758 0.600255 GAGCGTGCTTGTACCTGTGT 60.600 55.000 0.00 0.00 0.00 3.72
2553 7759 0.600255 AGCGTGCTTGTACCTGTGTC 60.600 55.000 0.00 0.00 0.00 3.67
2554 7760 0.600255 GCGTGCTTGTACCTGTGTCT 60.600 55.000 0.00 0.00 0.00 3.41
2555 7761 1.139989 CGTGCTTGTACCTGTGTCTG 58.860 55.000 0.00 0.00 0.00 3.51
2556 7762 1.269569 CGTGCTTGTACCTGTGTCTGA 60.270 52.381 0.00 0.00 0.00 3.27
2557 7763 2.408050 GTGCTTGTACCTGTGTCTGAG 58.592 52.381 0.00 0.00 0.00 3.35
2558 7764 2.039418 TGCTTGTACCTGTGTCTGAGT 58.961 47.619 0.00 0.00 0.00 3.41
2559 7765 2.224042 TGCTTGTACCTGTGTCTGAGTG 60.224 50.000 0.00 0.00 0.00 3.51
2560 7766 2.224066 GCTTGTACCTGTGTCTGAGTGT 60.224 50.000 0.00 0.00 0.00 3.55
2561 7767 3.643763 CTTGTACCTGTGTCTGAGTGTC 58.356 50.000 0.00 0.00 0.00 3.67
2562 7768 2.945456 TGTACCTGTGTCTGAGTGTCT 58.055 47.619 0.00 0.00 0.00 3.41
2563 7769 2.885266 TGTACCTGTGTCTGAGTGTCTC 59.115 50.000 0.00 0.00 0.00 3.36
2564 7770 0.955178 ACCTGTGTCTGAGTGTCTCG 59.045 55.000 0.00 0.00 32.35 4.04
2565 7771 1.239347 CCTGTGTCTGAGTGTCTCGA 58.761 55.000 0.00 0.00 32.35 4.04
2566 7772 1.609072 CCTGTGTCTGAGTGTCTCGAA 59.391 52.381 0.00 0.00 32.35 3.71
2567 7773 2.230025 CCTGTGTCTGAGTGTCTCGAAT 59.770 50.000 0.00 0.00 32.35 3.34
2568 7774 3.440522 CCTGTGTCTGAGTGTCTCGAATA 59.559 47.826 0.00 0.00 32.35 1.75
2569 7775 4.082733 CCTGTGTCTGAGTGTCTCGAATAA 60.083 45.833 0.00 0.00 32.35 1.40
2570 7776 4.795268 TGTGTCTGAGTGTCTCGAATAAC 58.205 43.478 0.00 0.00 32.35 1.89
2571 7777 4.277423 TGTGTCTGAGTGTCTCGAATAACA 59.723 41.667 0.00 0.00 32.35 2.41
2572 7778 5.048013 TGTGTCTGAGTGTCTCGAATAACAT 60.048 40.000 0.00 0.00 32.35 2.71
2573 7779 6.150474 TGTGTCTGAGTGTCTCGAATAACATA 59.850 38.462 0.00 0.00 32.35 2.29
2574 7780 7.148069 TGTGTCTGAGTGTCTCGAATAACATAT 60.148 37.037 0.00 0.00 32.35 1.78
2575 7781 7.377397 GTGTCTGAGTGTCTCGAATAACATATC 59.623 40.741 0.00 0.00 32.35 1.63
2576 7782 7.283354 TGTCTGAGTGTCTCGAATAACATATCT 59.717 37.037 0.00 0.00 32.35 1.98
2577 7783 7.589587 GTCTGAGTGTCTCGAATAACATATCTG 59.410 40.741 0.00 0.18 32.35 2.90
2578 7784 6.209361 TGAGTGTCTCGAATAACATATCTGC 58.791 40.000 0.00 0.00 32.35 4.26
2579 7785 5.533482 AGTGTCTCGAATAACATATCTGCC 58.467 41.667 0.00 0.00 0.00 4.85
2580 7786 4.686554 GTGTCTCGAATAACATATCTGCCC 59.313 45.833 0.00 0.00 0.00 5.36
2581 7787 4.343814 TGTCTCGAATAACATATCTGCCCA 59.656 41.667 0.00 0.00 0.00 5.36
2582 7788 4.926238 GTCTCGAATAACATATCTGCCCAG 59.074 45.833 0.00 0.00 0.00 4.45
2583 7789 4.021104 TCTCGAATAACATATCTGCCCAGG 60.021 45.833 0.00 0.00 0.00 4.45
2584 7790 3.646162 TCGAATAACATATCTGCCCAGGT 59.354 43.478 0.00 0.00 0.00 4.00
2585 7791 4.102524 TCGAATAACATATCTGCCCAGGTT 59.897 41.667 0.00 0.00 0.00 3.50
2586 7792 4.214119 CGAATAACATATCTGCCCAGGTTG 59.786 45.833 0.00 0.00 0.00 3.77
2587 7793 4.796110 ATAACATATCTGCCCAGGTTGT 57.204 40.909 0.00 0.00 0.00 3.32
2588 7794 2.425143 ACATATCTGCCCAGGTTGTG 57.575 50.000 0.00 0.00 0.00 3.33
2589 7795 1.027357 CATATCTGCCCAGGTTGTGC 58.973 55.000 0.00 0.00 0.00 4.57
2590 7796 0.921896 ATATCTGCCCAGGTTGTGCT 59.078 50.000 0.00 0.00 0.00 4.40
2591 7797 0.698238 TATCTGCCCAGGTTGTGCTT 59.302 50.000 0.00 0.00 0.00 3.91
2592 7798 0.896940 ATCTGCCCAGGTTGTGCTTG 60.897 55.000 0.00 0.00 0.00 4.01
2593 7799 1.829533 CTGCCCAGGTTGTGCTTGT 60.830 57.895 0.00 0.00 0.00 3.16
2594 7800 1.381056 TGCCCAGGTTGTGCTTGTT 60.381 52.632 0.00 0.00 0.00 2.83
2595 7801 0.975040 TGCCCAGGTTGTGCTTGTTT 60.975 50.000 0.00 0.00 0.00 2.83
2596 7802 1.036707 GCCCAGGTTGTGCTTGTTTA 58.963 50.000 0.00 0.00 0.00 2.01
2597 7803 1.000274 GCCCAGGTTGTGCTTGTTTAG 60.000 52.381 0.00 0.00 0.00 1.85
2598 7804 2.582052 CCCAGGTTGTGCTTGTTTAGA 58.418 47.619 0.00 0.00 0.00 2.10
2599 7805 2.955660 CCCAGGTTGTGCTTGTTTAGAA 59.044 45.455 0.00 0.00 0.00 2.10
2600 7806 3.383185 CCCAGGTTGTGCTTGTTTAGAAA 59.617 43.478 0.00 0.00 0.00 2.52
2601 7807 4.039124 CCCAGGTTGTGCTTGTTTAGAAAT 59.961 41.667 0.00 0.00 0.00 2.17
2602 7808 5.453198 CCCAGGTTGTGCTTGTTTAGAAATT 60.453 40.000 0.00 0.00 0.00 1.82
2603 7809 5.463061 CCAGGTTGTGCTTGTTTAGAAATTG 59.537 40.000 0.00 0.00 0.00 2.32
2604 7810 6.272318 CAGGTTGTGCTTGTTTAGAAATTGA 58.728 36.000 0.00 0.00 0.00 2.57
2605 7811 6.418819 CAGGTTGTGCTTGTTTAGAAATTGAG 59.581 38.462 0.00 0.00 0.00 3.02
2606 7812 6.096846 AGGTTGTGCTTGTTTAGAAATTGAGT 59.903 34.615 0.00 0.00 0.00 3.41
2607 7813 7.284489 AGGTTGTGCTTGTTTAGAAATTGAGTA 59.716 33.333 0.00 0.00 0.00 2.59
2608 7814 7.378728 GGTTGTGCTTGTTTAGAAATTGAGTAC 59.621 37.037 0.00 0.00 0.00 2.73
2609 7815 7.801716 TGTGCTTGTTTAGAAATTGAGTACT 57.198 32.000 0.00 0.00 0.00 2.73
2610 7816 8.896320 TGTGCTTGTTTAGAAATTGAGTACTA 57.104 30.769 0.00 0.00 0.00 1.82
2611 7817 8.988934 TGTGCTTGTTTAGAAATTGAGTACTAG 58.011 33.333 0.00 0.00 0.00 2.57
2612 7818 7.958025 GTGCTTGTTTAGAAATTGAGTACTAGC 59.042 37.037 0.00 0.00 34.85 3.42
2613 7819 7.878127 TGCTTGTTTAGAAATTGAGTACTAGCT 59.122 33.333 0.00 0.00 35.16 3.32
2614 7820 8.722394 GCTTGTTTAGAAATTGAGTACTAGCTT 58.278 33.333 0.00 0.00 32.71 3.74
2616 7822 9.555727 TTGTTTAGAAATTGAGTACTAGCTTGT 57.444 29.630 6.00 6.00 0.00 3.16
2619 7825 9.871238 TTTAGAAATTGAGTACTAGCTTGTAGG 57.129 33.333 8.34 0.00 0.00 3.18
2620 7826 6.342111 AGAAATTGAGTACTAGCTTGTAGGC 58.658 40.000 8.34 4.63 0.00 3.93
2621 7827 5.941555 AATTGAGTACTAGCTTGTAGGCT 57.058 39.130 8.34 3.42 45.29 4.58
2622 7828 5.941555 ATTGAGTACTAGCTTGTAGGCTT 57.058 39.130 8.34 0.00 42.97 4.35
2623 7829 7.419711 AATTGAGTACTAGCTTGTAGGCTTA 57.580 36.000 8.34 0.00 42.97 3.09
2624 7830 7.604657 ATTGAGTACTAGCTTGTAGGCTTAT 57.395 36.000 8.34 0.23 42.97 1.73
2625 7831 8.707796 ATTGAGTACTAGCTTGTAGGCTTATA 57.292 34.615 8.34 0.00 42.97 0.98
2626 7832 8.707796 TTGAGTACTAGCTTGTAGGCTTATAT 57.292 34.615 8.34 0.00 42.97 0.86
2627 7833 9.803507 TTGAGTACTAGCTTGTAGGCTTATATA 57.196 33.333 8.34 0.00 42.97 0.86
2628 7834 9.976776 TGAGTACTAGCTTGTAGGCTTATATAT 57.023 33.333 8.34 0.00 42.97 0.86
2630 7836 9.191479 AGTACTAGCTTGTAGGCTTATATATGG 57.809 37.037 8.34 0.00 42.97 2.74
2631 7837 8.968969 GTACTAGCTTGTAGGCTTATATATGGT 58.031 37.037 8.34 0.00 42.97 3.55
2632 7838 8.437274 ACTAGCTTGTAGGCTTATATATGGTT 57.563 34.615 0.00 0.00 42.97 3.67
2633 7839 8.314751 ACTAGCTTGTAGGCTTATATATGGTTG 58.685 37.037 0.00 0.00 42.97 3.77
2634 7840 7.079451 AGCTTGTAGGCTTATATATGGTTGT 57.921 36.000 0.00 0.00 39.86 3.32
2635 7841 8.202461 AGCTTGTAGGCTTATATATGGTTGTA 57.798 34.615 0.00 0.00 39.86 2.41
2636 7842 8.826765 AGCTTGTAGGCTTATATATGGTTGTAT 58.173 33.333 0.00 0.00 39.86 2.29
2637 7843 8.883731 GCTTGTAGGCTTATATATGGTTGTATG 58.116 37.037 0.00 0.00 0.00 2.39
2639 7845 9.938280 TTGTAGGCTTATATATGGTTGTATGAC 57.062 33.333 0.00 0.00 0.00 3.06
2640 7846 9.321532 TGTAGGCTTATATATGGTTGTATGACT 57.678 33.333 0.00 0.00 0.00 3.41
2643 7849 9.105844 AGGCTTATATATGGTTGTATGACTTCT 57.894 33.333 0.00 0.00 0.00 2.85
2644 7850 9.726438 GGCTTATATATGGTTGTATGACTTCTT 57.274 33.333 0.00 0.00 0.00 2.52
2659 7865 9.678941 GTATGACTTCTTTTTAGAAAAACAGGG 57.321 33.333 0.00 0.00 34.46 4.45
2660 7866 7.948034 TGACTTCTTTTTAGAAAAACAGGGA 57.052 32.000 0.00 0.00 34.46 4.20
2661 7867 7.996385 TGACTTCTTTTTAGAAAAACAGGGAG 58.004 34.615 0.00 0.00 34.46 4.30
2662 7868 6.806751 ACTTCTTTTTAGAAAAACAGGGAGC 58.193 36.000 0.00 0.00 34.46 4.70
2663 7869 6.379988 ACTTCTTTTTAGAAAAACAGGGAGCA 59.620 34.615 0.00 0.00 34.46 4.26
2664 7870 6.144078 TCTTTTTAGAAAAACAGGGAGCAC 57.856 37.500 0.00 0.00 34.46 4.40
2665 7871 4.929819 TTTTAGAAAAACAGGGAGCACC 57.070 40.909 0.00 0.00 40.67 5.01
2666 7872 4.959839 TTTTTAGAAAAACAGGGAGCACCT 59.040 37.500 0.00 0.00 40.62 4.00
2667 7873 5.068591 TTTTTAGAAAAACAGGGAGCACCTC 59.931 40.000 0.00 0.00 39.14 3.85
2668 7874 7.863468 TTTTTAGAAAAACAGGGAGCACCTCC 61.863 42.308 0.00 2.62 39.14 4.30
2675 7881 4.097361 GGAGCACCTCCCCGGTTC 62.097 72.222 0.00 0.00 46.37 3.62
2676 7882 4.097361 GAGCACCTCCCCGGTTCC 62.097 72.222 0.00 0.00 46.37 3.62
2677 7883 4.974438 AGCACCTCCCCGGTTCCA 62.974 66.667 0.00 0.00 46.37 3.53
2678 7884 3.728373 GCACCTCCCCGGTTCCAT 61.728 66.667 0.00 0.00 46.37 3.41
2679 7885 3.087065 CACCTCCCCGGTTCCATT 58.913 61.111 0.00 0.00 46.37 3.16
2680 7886 1.378514 CACCTCCCCGGTTCCATTG 60.379 63.158 0.00 0.00 46.37 2.82
2681 7887 2.440247 CCTCCCCGGTTCCATTGC 60.440 66.667 0.00 0.00 0.00 3.56
2682 7888 2.677228 CTCCCCGGTTCCATTGCT 59.323 61.111 0.00 0.00 0.00 3.91
2683 7889 1.750399 CTCCCCGGTTCCATTGCTG 60.750 63.158 0.00 0.00 0.00 4.41
2684 7890 2.196997 CTCCCCGGTTCCATTGCTGA 62.197 60.000 0.00 0.00 0.00 4.26
2685 7891 1.750399 CCCCGGTTCCATTGCTGAG 60.750 63.158 0.00 0.00 0.00 3.35
2686 7892 1.299648 CCCGGTTCCATTGCTGAGA 59.700 57.895 0.00 0.00 0.00 3.27
2687 7893 0.322456 CCCGGTTCCATTGCTGAGAA 60.322 55.000 0.00 0.00 0.00 2.87
2688 7894 0.804989 CCGGTTCCATTGCTGAGAAC 59.195 55.000 0.00 0.00 39.31 3.01
2689 7895 0.443869 CGGTTCCATTGCTGAGAACG 59.556 55.000 0.00 0.00 40.62 3.95
2690 7896 1.808411 GGTTCCATTGCTGAGAACGA 58.192 50.000 0.00 0.00 40.62 3.85
2691 7897 2.151202 GGTTCCATTGCTGAGAACGAA 58.849 47.619 0.00 0.00 40.62 3.85
2692 7898 2.552315 GGTTCCATTGCTGAGAACGAAA 59.448 45.455 0.00 0.00 40.62 3.46
2693 7899 3.555518 GTTCCATTGCTGAGAACGAAAC 58.444 45.455 0.00 0.00 31.45 2.78
2694 7900 2.151202 TCCATTGCTGAGAACGAAACC 58.849 47.619 0.00 0.00 0.00 3.27
2695 7901 1.879380 CCATTGCTGAGAACGAAACCA 59.121 47.619 0.00 0.00 0.00 3.67
2696 7902 2.350772 CCATTGCTGAGAACGAAACCAC 60.351 50.000 0.00 0.00 0.00 4.16
2697 7903 0.934496 TTGCTGAGAACGAAACCACG 59.066 50.000 0.00 0.00 39.31 4.94
2698 7904 0.103390 TGCTGAGAACGAAACCACGA 59.897 50.000 0.00 0.00 37.03 4.35
2699 7905 0.507358 GCTGAGAACGAAACCACGAC 59.493 55.000 0.00 0.00 37.03 4.34
2700 7906 1.847818 CTGAGAACGAAACCACGACA 58.152 50.000 0.00 0.00 37.03 4.35
2701 7907 2.404215 CTGAGAACGAAACCACGACAT 58.596 47.619 0.00 0.00 37.03 3.06
2702 7908 3.571571 CTGAGAACGAAACCACGACATA 58.428 45.455 0.00 0.00 37.03 2.29
2703 7909 3.571571 TGAGAACGAAACCACGACATAG 58.428 45.455 0.00 0.00 37.03 2.23
2704 7910 3.005050 TGAGAACGAAACCACGACATAGT 59.995 43.478 0.00 0.00 37.03 2.12
2705 7911 3.572584 AGAACGAAACCACGACATAGTC 58.427 45.455 0.00 0.00 37.03 2.59
2706 7912 3.255149 AGAACGAAACCACGACATAGTCT 59.745 43.478 0.00 0.00 37.03 3.24
2707 7913 2.942710 ACGAAACCACGACATAGTCTG 58.057 47.619 0.00 0.00 37.03 3.51
2708 7914 2.555325 ACGAAACCACGACATAGTCTGA 59.445 45.455 0.00 0.00 37.03 3.27
2709 7915 2.915463 CGAAACCACGACATAGTCTGAC 59.085 50.000 0.00 0.00 35.09 3.51
2710 7916 3.610821 CGAAACCACGACATAGTCTGACA 60.611 47.826 10.88 0.00 35.09 3.58
2711 7917 3.299340 AACCACGACATAGTCTGACAC 57.701 47.619 10.88 0.00 0.00 3.67
2712 7918 2.515854 ACCACGACATAGTCTGACACT 58.484 47.619 10.88 0.00 39.41 3.55
2713 7919 3.682696 ACCACGACATAGTCTGACACTA 58.317 45.455 10.88 0.00 42.09 2.74
2714 7920 3.690139 ACCACGACATAGTCTGACACTAG 59.310 47.826 10.88 0.00 41.13 2.57
2715 7921 3.690139 CCACGACATAGTCTGACACTAGT 59.310 47.826 10.88 2.93 41.13 2.57
2716 7922 4.874396 CCACGACATAGTCTGACACTAGTA 59.126 45.833 10.88 0.00 41.13 1.82
2717 7923 5.220624 CCACGACATAGTCTGACACTAGTAC 60.221 48.000 10.88 0.00 41.13 2.73
2718 7924 5.350640 CACGACATAGTCTGACACTAGTACA 59.649 44.000 10.88 0.00 41.13 2.90
2719 7925 5.936372 ACGACATAGTCTGACACTAGTACAA 59.064 40.000 10.88 0.00 41.13 2.41
2720 7926 6.429078 ACGACATAGTCTGACACTAGTACAAA 59.571 38.462 10.88 0.00 41.13 2.83
2721 7927 7.040892 ACGACATAGTCTGACACTAGTACAAAA 60.041 37.037 10.88 0.00 41.13 2.44
2722 7928 7.270793 CGACATAGTCTGACACTAGTACAAAAC 59.729 40.741 10.88 1.47 41.13 2.43
2723 7929 7.948357 ACATAGTCTGACACTAGTACAAAACA 58.052 34.615 10.88 0.00 41.13 2.83
2724 7930 8.082852 ACATAGTCTGACACTAGTACAAAACAG 58.917 37.037 10.88 0.01 41.13 3.16
2725 7931 5.844004 AGTCTGACACTAGTACAAAACAGG 58.156 41.667 10.88 0.00 31.37 4.00
2726 7932 4.989168 GTCTGACACTAGTACAAAACAGGG 59.011 45.833 2.24 0.00 0.00 4.45
2727 7933 3.735591 TGACACTAGTACAAAACAGGGC 58.264 45.455 0.00 0.00 0.00 5.19
2728 7934 3.389983 TGACACTAGTACAAAACAGGGCT 59.610 43.478 0.00 0.00 0.00 5.19
2729 7935 4.141574 TGACACTAGTACAAAACAGGGCTT 60.142 41.667 0.00 0.00 0.00 4.35
2730 7936 4.788679 ACACTAGTACAAAACAGGGCTTT 58.211 39.130 0.00 0.00 0.00 3.51
2731 7937 4.820173 ACACTAGTACAAAACAGGGCTTTC 59.180 41.667 0.00 0.00 0.00 2.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 0.470766 TGTTACCGAACCACCTTGCT 59.529 50.000 0.00 0.00 34.38 3.91
97 98 2.789409 ACTACTTGCATGGGAGTTCC 57.211 50.000 4.44 0.00 0.00 3.62
146 245 1.141657 AGATGGACCCATTCATCACCG 59.858 52.381 2.68 0.00 41.45 4.94
242 349 3.181479 GGATGTCTTAGTCGGTATGCACA 60.181 47.826 0.00 0.00 0.00 4.57
353 465 7.877097 GCATCTGGATCATTAAAGTAGTGATCT 59.123 37.037 15.92 0.13 45.68 2.75
354 466 7.877097 AGCATCTGGATCATTAAAGTAGTGATC 59.123 37.037 10.65 10.65 45.67 2.92
355 467 7.743749 AGCATCTGGATCATTAAAGTAGTGAT 58.256 34.615 0.00 0.00 37.77 3.06
356 468 7.129457 AGCATCTGGATCATTAAAGTAGTGA 57.871 36.000 0.00 0.00 0.00 3.41
357 469 7.798596 AAGCATCTGGATCATTAAAGTAGTG 57.201 36.000 0.00 0.00 0.00 2.74
358 470 8.814038 AAAAGCATCTGGATCATTAAAGTAGT 57.186 30.769 0.00 0.00 0.00 2.73
371 483 8.836413 CCGTAAAGAAATATAAAAGCATCTGGA 58.164 33.333 0.00 0.00 0.00 3.86
372 484 8.836413 TCCGTAAAGAAATATAAAAGCATCTGG 58.164 33.333 0.00 0.00 0.00 3.86
373 485 9.869844 CTCCGTAAAGAAATATAAAAGCATCTG 57.130 33.333 0.00 0.00 0.00 2.90
374 486 9.057089 CCTCCGTAAAGAAATATAAAAGCATCT 57.943 33.333 0.00 0.00 0.00 2.90
375 487 8.290325 CCCTCCGTAAAGAAATATAAAAGCATC 58.710 37.037 0.00 0.00 0.00 3.91
376 488 7.996644 TCCCTCCGTAAAGAAATATAAAAGCAT 59.003 33.333 0.00 0.00 0.00 3.79
377 489 7.340256 TCCCTCCGTAAAGAAATATAAAAGCA 58.660 34.615 0.00 0.00 0.00 3.91
378 490 7.498239 ACTCCCTCCGTAAAGAAATATAAAAGC 59.502 37.037 0.00 0.00 0.00 3.51
379 491 8.959705 ACTCCCTCCGTAAAGAAATATAAAAG 57.040 34.615 0.00 0.00 0.00 2.27
380 492 9.822185 GTACTCCCTCCGTAAAGAAATATAAAA 57.178 33.333 0.00 0.00 0.00 1.52
381 493 9.205513 AGTACTCCCTCCGTAAAGAAATATAAA 57.794 33.333 0.00 0.00 0.00 1.40
382 494 8.773033 AGTACTCCCTCCGTAAAGAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
383 495 7.173907 CGAGTACTCCCTCCGTAAAGAAATATA 59.826 40.741 17.23 0.00 0.00 0.86
384 496 6.016443 CGAGTACTCCCTCCGTAAAGAAATAT 60.016 42.308 17.23 0.00 0.00 1.28
385 497 5.297776 CGAGTACTCCCTCCGTAAAGAAATA 59.702 44.000 17.23 0.00 0.00 1.40
386 498 4.097589 CGAGTACTCCCTCCGTAAAGAAAT 59.902 45.833 17.23 0.00 0.00 2.17
387 499 3.441572 CGAGTACTCCCTCCGTAAAGAAA 59.558 47.826 17.23 0.00 0.00 2.52
388 500 3.012518 CGAGTACTCCCTCCGTAAAGAA 58.987 50.000 17.23 0.00 0.00 2.52
389 501 2.636830 CGAGTACTCCCTCCGTAAAGA 58.363 52.381 17.23 0.00 0.00 2.52
390 502 1.065251 GCGAGTACTCCCTCCGTAAAG 59.935 57.143 17.23 0.30 0.00 1.85
391 503 1.098050 GCGAGTACTCCCTCCGTAAA 58.902 55.000 17.23 0.00 0.00 2.01
392 504 0.254178 AGCGAGTACTCCCTCCGTAA 59.746 55.000 17.23 0.00 0.00 3.18
393 505 1.069823 CTAGCGAGTACTCCCTCCGTA 59.930 57.143 17.23 0.00 0.00 4.02
394 506 0.179051 CTAGCGAGTACTCCCTCCGT 60.179 60.000 17.23 0.00 0.00 4.69
395 507 0.885596 CCTAGCGAGTACTCCCTCCG 60.886 65.000 17.23 6.92 0.00 4.63
396 508 1.174078 GCCTAGCGAGTACTCCCTCC 61.174 65.000 17.23 3.65 0.00 4.30
397 509 0.179012 AGCCTAGCGAGTACTCCCTC 60.179 60.000 17.23 6.80 0.00 4.30
398 510 0.259356 AAGCCTAGCGAGTACTCCCT 59.741 55.000 17.23 15.68 0.00 4.20
399 511 0.669619 GAAGCCTAGCGAGTACTCCC 59.330 60.000 17.23 8.43 0.00 4.30
400 512 1.682740 AGAAGCCTAGCGAGTACTCC 58.317 55.000 17.23 9.91 0.00 3.85
401 513 2.809696 CCTAGAAGCCTAGCGAGTACTC 59.190 54.545 13.18 13.18 40.78 2.59
402 514 2.853705 CCTAGAAGCCTAGCGAGTACT 58.146 52.381 0.00 0.00 40.78 2.73
403 515 1.267533 GCCTAGAAGCCTAGCGAGTAC 59.732 57.143 0.00 0.00 40.78 2.73
404 516 1.143277 AGCCTAGAAGCCTAGCGAGTA 59.857 52.381 0.00 0.00 40.78 2.59
407 519 1.545875 CCTAGCCTAGAAGCCTAGCGA 60.546 57.143 0.00 0.00 40.78 4.93
482 594 3.978193 TCACCCATGCCCACACCC 61.978 66.667 0.00 0.00 0.00 4.61
534 646 7.385778 TCATTTTAACCACACAGTAATAGCC 57.614 36.000 0.00 0.00 0.00 3.93
544 656 3.243704 TGGCTTGCTCATTTTAACCACAC 60.244 43.478 0.00 0.00 0.00 3.82
545 657 2.961741 TGGCTTGCTCATTTTAACCACA 59.038 40.909 0.00 0.00 0.00 4.17
586 720 0.611618 ATCGGTCCTTTTGGCATGCA 60.612 50.000 21.36 2.54 40.12 3.96
593 727 3.073678 TGTGATGTGATCGGTCCTTTTG 58.926 45.455 0.00 0.00 0.00 2.44
604 738 3.885724 TGTACCGACATGTGATGTGAT 57.114 42.857 1.15 0.00 45.03 3.06
619 800 3.303132 CGCTAATTCCTTTCGCATGTACC 60.303 47.826 0.00 0.00 0.00 3.34
653 842 2.866156 GCACAAGGAATGAATCGATCGA 59.134 45.455 21.86 21.86 0.00 3.59
664 885 2.037847 GGGCTGGGCACAAGGAAT 59.962 61.111 0.00 0.00 0.00 3.01
693 914 2.929398 CAACGTGTCGATGAATGGATGA 59.071 45.455 0.00 0.00 31.46 2.92
743 969 2.509336 CGGCGATGGAAAGCGACT 60.509 61.111 0.00 0.00 32.22 4.18
759 985 3.706563 TAAGAGCAGCTGCGAGCCG 62.707 63.158 31.78 0.00 43.77 5.52
944 1189 6.441274 CACACAGTCAGCTTAATTTCAACAT 58.559 36.000 0.00 0.00 0.00 2.71
1072 1321 0.770557 AGTTGGTAGTGGCCCAAGGA 60.771 55.000 0.00 0.00 42.44 3.36
1099 1351 3.518303 AGAGTTCAAGGGGTAATTACGCT 59.482 43.478 26.16 13.42 38.94 5.07
1100 1352 3.621715 CAGAGTTCAAGGGGTAATTACGC 59.378 47.826 21.16 21.16 38.30 4.42
1101 1353 4.828829 ACAGAGTTCAAGGGGTAATTACG 58.171 43.478 9.46 0.00 0.00 3.18
1119 1371 5.175859 GGAAACTTGATCGGAATGTACAGA 58.824 41.667 0.33 0.00 0.00 3.41
1135 1387 1.006922 GTCGGTCGGTCGGAAACTT 60.007 57.895 0.00 0.00 0.00 2.66
1178 1430 3.190849 CCTGCATGCAGACGACGG 61.191 66.667 42.21 25.41 46.30 4.79
1254 1512 2.912542 CCGATCCAGAGGGCGCTA 60.913 66.667 7.64 0.00 0.00 4.26
1682 4715 1.364626 GCATCTCGGGCACACTGAAG 61.365 60.000 0.00 0.00 33.08 3.02
1710 4743 0.320374 AGTTTCGAAGATGACCCGCA 59.680 50.000 0.00 0.00 35.04 5.69
1786 4823 3.051650 TGGCCTCCCTAAAGATAGTACCA 60.052 47.826 3.32 0.00 0.00 3.25
1857 6984 4.935205 CGATTACATTCTTGGACACAGGAA 59.065 41.667 0.00 0.00 45.20 3.36
1858 6985 4.020573 ACGATTACATTCTTGGACACAGGA 60.021 41.667 0.00 0.00 0.00 3.86
1859 6986 4.093408 CACGATTACATTCTTGGACACAGG 59.907 45.833 0.00 0.00 0.00 4.00
1860 6987 4.690748 ACACGATTACATTCTTGGACACAG 59.309 41.667 0.00 0.00 0.00 3.66
1903 7030 2.039418 AGCTTCCATAGACGCACCATA 58.961 47.619 0.00 0.00 39.66 2.74
1921 7048 1.402968 CCACAACATATGAGCACCAGC 59.597 52.381 10.38 0.00 42.56 4.85
1975 7102 2.196749 CACAACATACTCGCTGGCTAG 58.803 52.381 0.00 0.00 0.00 3.42
1983 7110 1.078709 CACCTGGCACAACATACTCG 58.921 55.000 0.00 0.00 38.70 4.18
1995 7122 3.018423 AGATTCCATTAACCACCTGGC 57.982 47.619 0.00 0.00 39.32 4.85
2042 7169 3.748645 ACCACTCATCAGTACCTCTCT 57.251 47.619 0.00 0.00 0.00 3.10
2043 7170 4.020543 AGAACCACTCATCAGTACCTCTC 58.979 47.826 0.00 0.00 0.00 3.20
2044 7171 4.054359 AGAACCACTCATCAGTACCTCT 57.946 45.455 0.00 0.00 0.00 3.69
2045 7172 4.202070 GCTAGAACCACTCATCAGTACCTC 60.202 50.000 0.00 0.00 0.00 3.85
2046 7173 3.702045 GCTAGAACCACTCATCAGTACCT 59.298 47.826 0.00 0.00 0.00 3.08
2047 7174 3.702045 AGCTAGAACCACTCATCAGTACC 59.298 47.826 0.00 0.00 0.00 3.34
2048 7175 4.993029 AGCTAGAACCACTCATCAGTAC 57.007 45.455 0.00 0.00 0.00 2.73
2049 7176 5.594725 CCTTAGCTAGAACCACTCATCAGTA 59.405 44.000 0.00 0.00 0.00 2.74
2050 7177 4.404073 CCTTAGCTAGAACCACTCATCAGT 59.596 45.833 0.00 0.00 0.00 3.41
2051 7178 4.646945 TCCTTAGCTAGAACCACTCATCAG 59.353 45.833 0.00 0.00 0.00 2.90
2052 7179 4.610333 TCCTTAGCTAGAACCACTCATCA 58.390 43.478 0.00 0.00 0.00 3.07
2053 7180 5.361285 TCTTCCTTAGCTAGAACCACTCATC 59.639 44.000 0.00 0.00 0.00 2.92
2054 7181 5.273208 TCTTCCTTAGCTAGAACCACTCAT 58.727 41.667 0.00 0.00 0.00 2.90
2055 7182 4.673968 TCTTCCTTAGCTAGAACCACTCA 58.326 43.478 0.00 0.00 0.00 3.41
2056 7183 5.662674 TTCTTCCTTAGCTAGAACCACTC 57.337 43.478 0.00 0.00 0.00 3.51
2057 7184 7.068962 GTCTATTCTTCCTTAGCTAGAACCACT 59.931 40.741 0.00 0.00 31.31 4.00
2058 7185 7.204604 GTCTATTCTTCCTTAGCTAGAACCAC 58.795 42.308 0.00 0.00 31.31 4.16
2059 7186 6.324254 GGTCTATTCTTCCTTAGCTAGAACCA 59.676 42.308 0.00 0.00 31.31 3.67
2060 7187 6.551975 AGGTCTATTCTTCCTTAGCTAGAACC 59.448 42.308 0.00 0.00 31.23 3.62
2061 7188 7.591421 AGGTCTATTCTTCCTTAGCTAGAAC 57.409 40.000 0.00 0.00 31.31 3.01
2064 7191 8.899771 GCTATAGGTCTATTCTTCCTTAGCTAG 58.100 40.741 1.04 0.00 36.40 3.42
2065 7192 8.391699 TGCTATAGGTCTATTCTTCCTTAGCTA 58.608 37.037 1.04 0.00 37.96 3.32
2066 7193 7.242359 TGCTATAGGTCTATTCTTCCTTAGCT 58.758 38.462 1.04 0.00 37.96 3.32
2067 7194 7.469537 TGCTATAGGTCTATTCTTCCTTAGC 57.530 40.000 1.04 0.00 37.82 3.09
2068 7195 7.978975 GCATGCTATAGGTCTATTCTTCCTTAG 59.021 40.741 11.37 0.00 33.34 2.18
2069 7196 7.676043 AGCATGCTATAGGTCTATTCTTCCTTA 59.324 37.037 21.21 0.00 33.34 2.69
2070 7197 6.500049 AGCATGCTATAGGTCTATTCTTCCTT 59.500 38.462 21.21 0.00 33.34 3.36
2071 7198 6.022315 AGCATGCTATAGGTCTATTCTTCCT 58.978 40.000 21.21 0.00 35.60 3.36
2072 7199 6.105333 CAGCATGCTATAGGTCTATTCTTCC 58.895 44.000 22.19 0.00 0.00 3.46
2090 7217 1.227205 GTCCTCTCCTCGCAGCATG 60.227 63.158 0.00 0.00 40.87 4.06
2148 7275 9.070179 CATATGAGTTCATGAACATAAATCCCA 57.930 33.333 33.92 19.43 43.47 4.37
2221 7395 3.685756 ACATGTAACCGACCAAATAACCG 59.314 43.478 0.00 0.00 0.00 4.44
2234 7408 3.372954 CGATCGAGAGGAACATGTAACC 58.627 50.000 10.26 12.37 0.00 2.85
2292 7487 3.149648 GCCATGCCCATCCACACC 61.150 66.667 0.00 0.00 0.00 4.16
2299 7499 3.426836 AGCCAGAGCCATGCCCAT 61.427 61.111 0.00 0.00 41.25 4.00
2321 7521 3.488090 GCACGGCTCGCAGTAACC 61.488 66.667 0.00 0.00 0.00 2.85
2322 7522 2.736995 TGCACGGCTCGCAGTAAC 60.737 61.111 0.00 0.00 33.55 2.50
2334 7534 0.534427 AGCCATGATGGATCTGCACG 60.534 55.000 17.22 0.00 40.96 5.34
2371 7571 2.380064 TTCCATTTGTGTGCTTCCCT 57.620 45.000 0.00 0.00 0.00 4.20
2473 7679 5.220416 CCGCACAGTAATTTTCTACTACTGC 60.220 44.000 8.08 1.65 44.15 4.40
2474 7680 5.220416 GCCGCACAGTAATTTTCTACTACTG 60.220 44.000 6.87 6.87 45.26 2.74
2482 7688 5.636837 TGAATTAGCCGCACAGTAATTTTC 58.363 37.500 0.00 0.00 0.00 2.29
2497 7703 5.067023 AGCAAGCTAGGTCATTTGAATTAGC 59.933 40.000 12.94 12.94 37.96 3.09
2498 7704 6.690194 AGCAAGCTAGGTCATTTGAATTAG 57.310 37.500 0.00 0.00 0.00 1.73
2499 7705 7.338710 AGTAGCAAGCTAGGTCATTTGAATTA 58.661 34.615 1.29 0.00 0.00 1.40
2500 7706 6.183347 AGTAGCAAGCTAGGTCATTTGAATT 58.817 36.000 1.29 0.00 0.00 2.17
2501 7707 5.749462 AGTAGCAAGCTAGGTCATTTGAAT 58.251 37.500 1.29 0.00 0.00 2.57
2502 7708 5.165961 AGTAGCAAGCTAGGTCATTTGAA 57.834 39.130 1.29 0.00 0.00 2.69
2503 7709 4.826274 AGTAGCAAGCTAGGTCATTTGA 57.174 40.909 1.29 0.00 0.00 2.69
2504 7710 5.053145 CCTAGTAGCAAGCTAGGTCATTTG 58.947 45.833 15.77 0.00 46.44 2.32
2505 7711 5.283457 CCTAGTAGCAAGCTAGGTCATTT 57.717 43.478 15.77 0.00 46.44 2.32
2506 7712 4.946478 CCTAGTAGCAAGCTAGGTCATT 57.054 45.455 15.77 0.00 46.44 2.57
2512 7718 5.064071 GCTCAAAAACCTAGTAGCAAGCTAG 59.936 44.000 1.29 0.00 36.57 3.42
2513 7719 4.935808 GCTCAAAAACCTAGTAGCAAGCTA 59.064 41.667 0.00 0.00 0.00 3.32
2514 7720 3.753797 GCTCAAAAACCTAGTAGCAAGCT 59.246 43.478 0.00 0.00 0.00 3.74
2515 7721 3.424962 CGCTCAAAAACCTAGTAGCAAGC 60.425 47.826 0.00 0.00 0.00 4.01
2516 7722 3.746492 ACGCTCAAAAACCTAGTAGCAAG 59.254 43.478 0.00 0.00 0.00 4.01
2517 7723 3.496884 CACGCTCAAAAACCTAGTAGCAA 59.503 43.478 0.00 0.00 0.00 3.91
2518 7724 3.064207 CACGCTCAAAAACCTAGTAGCA 58.936 45.455 0.00 0.00 0.00 3.49
2519 7725 2.159693 GCACGCTCAAAAACCTAGTAGC 60.160 50.000 0.00 0.00 0.00 3.58
2520 7726 3.326747 AGCACGCTCAAAAACCTAGTAG 58.673 45.455 0.00 0.00 0.00 2.57
2521 7727 3.396260 AGCACGCTCAAAAACCTAGTA 57.604 42.857 0.00 0.00 0.00 1.82
2522 7728 2.256117 AGCACGCTCAAAAACCTAGT 57.744 45.000 0.00 0.00 0.00 2.57
2523 7729 2.290641 ACAAGCACGCTCAAAAACCTAG 59.709 45.455 0.00 0.00 0.00 3.02
2524 7730 2.294074 ACAAGCACGCTCAAAAACCTA 58.706 42.857 0.00 0.00 0.00 3.08
2525 7731 1.102978 ACAAGCACGCTCAAAAACCT 58.897 45.000 0.00 0.00 0.00 3.50
2526 7732 2.381589 GTACAAGCACGCTCAAAAACC 58.618 47.619 0.00 0.00 0.00 3.27
2527 7733 2.032924 AGGTACAAGCACGCTCAAAAAC 59.967 45.455 0.00 0.00 0.00 2.43
2528 7734 2.032799 CAGGTACAAGCACGCTCAAAAA 59.967 45.455 0.00 0.00 0.00 1.94
2529 7735 1.601903 CAGGTACAAGCACGCTCAAAA 59.398 47.619 0.00 0.00 0.00 2.44
2530 7736 1.225855 CAGGTACAAGCACGCTCAAA 58.774 50.000 0.00 0.00 0.00 2.69
2531 7737 0.105964 ACAGGTACAAGCACGCTCAA 59.894 50.000 0.00 0.00 0.00 3.02
2532 7738 0.599991 CACAGGTACAAGCACGCTCA 60.600 55.000 0.00 0.00 0.00 4.26
2533 7739 0.600255 ACACAGGTACAAGCACGCTC 60.600 55.000 0.00 0.00 0.00 5.03
2534 7740 0.600255 GACACAGGTACAAGCACGCT 60.600 55.000 0.00 0.00 0.00 5.07
2535 7741 0.600255 AGACACAGGTACAAGCACGC 60.600 55.000 0.00 0.00 0.00 5.34
2536 7742 1.139989 CAGACACAGGTACAAGCACG 58.860 55.000 0.00 0.00 0.00 5.34
2537 7743 2.224066 ACTCAGACACAGGTACAAGCAC 60.224 50.000 0.00 0.00 0.00 4.40
2538 7744 2.039418 ACTCAGACACAGGTACAAGCA 58.961 47.619 0.00 0.00 0.00 3.91
2539 7745 2.224066 ACACTCAGACACAGGTACAAGC 60.224 50.000 0.00 0.00 0.00 4.01
2540 7746 3.319405 AGACACTCAGACACAGGTACAAG 59.681 47.826 0.00 0.00 0.00 3.16
2541 7747 3.296854 AGACACTCAGACACAGGTACAA 58.703 45.455 0.00 0.00 0.00 2.41
2542 7748 2.885266 GAGACACTCAGACACAGGTACA 59.115 50.000 0.00 0.00 0.00 2.90
2543 7749 2.095668 CGAGACACTCAGACACAGGTAC 60.096 54.545 0.00 0.00 0.00 3.34
2544 7750 2.152016 CGAGACACTCAGACACAGGTA 58.848 52.381 0.00 0.00 0.00 3.08
2545 7751 0.955178 CGAGACACTCAGACACAGGT 59.045 55.000 0.00 0.00 0.00 4.00
2546 7752 1.239347 TCGAGACACTCAGACACAGG 58.761 55.000 0.00 0.00 0.00 4.00
2547 7753 3.567576 ATTCGAGACACTCAGACACAG 57.432 47.619 0.00 0.00 0.00 3.66
2548 7754 4.277423 TGTTATTCGAGACACTCAGACACA 59.723 41.667 0.00 0.00 0.00 3.72
2549 7755 4.795268 TGTTATTCGAGACACTCAGACAC 58.205 43.478 0.00 0.00 0.00 3.67
2550 7756 5.644977 ATGTTATTCGAGACACTCAGACA 57.355 39.130 0.00 0.00 0.00 3.41
2551 7757 7.589587 CAGATATGTTATTCGAGACACTCAGAC 59.410 40.741 0.00 0.00 0.00 3.51
2552 7758 7.643579 CAGATATGTTATTCGAGACACTCAGA 58.356 38.462 0.00 0.00 0.00 3.27
2553 7759 6.362016 GCAGATATGTTATTCGAGACACTCAG 59.638 42.308 0.00 1.51 0.00 3.35
2554 7760 6.209361 GCAGATATGTTATTCGAGACACTCA 58.791 40.000 0.00 0.00 0.00 3.41
2555 7761 5.631512 GGCAGATATGTTATTCGAGACACTC 59.368 44.000 1.22 0.00 0.00 3.51
2556 7762 5.509840 GGGCAGATATGTTATTCGAGACACT 60.510 44.000 1.22 0.00 0.00 3.55
2557 7763 4.686554 GGGCAGATATGTTATTCGAGACAC 59.313 45.833 1.22 0.00 0.00 3.67
2558 7764 4.343814 TGGGCAGATATGTTATTCGAGACA 59.656 41.667 1.64 1.64 0.00 3.41
2559 7765 4.883083 TGGGCAGATATGTTATTCGAGAC 58.117 43.478 0.00 0.00 0.00 3.36
2560 7766 4.021104 CCTGGGCAGATATGTTATTCGAGA 60.021 45.833 0.00 0.00 0.00 4.04
2561 7767 4.248859 CCTGGGCAGATATGTTATTCGAG 58.751 47.826 0.00 0.00 0.00 4.04
2562 7768 3.646162 ACCTGGGCAGATATGTTATTCGA 59.354 43.478 0.00 0.00 0.00 3.71
2563 7769 4.008074 ACCTGGGCAGATATGTTATTCG 57.992 45.455 0.00 0.00 0.00 3.34
2564 7770 5.009010 CACAACCTGGGCAGATATGTTATTC 59.991 44.000 0.00 0.00 0.00 1.75
2565 7771 4.889409 CACAACCTGGGCAGATATGTTATT 59.111 41.667 0.00 0.00 0.00 1.40
2566 7772 4.464008 CACAACCTGGGCAGATATGTTAT 58.536 43.478 0.00 0.00 0.00 1.89
2567 7773 3.884895 CACAACCTGGGCAGATATGTTA 58.115 45.455 0.00 0.00 0.00 2.41
2568 7774 2.726821 CACAACCTGGGCAGATATGTT 58.273 47.619 0.00 0.00 0.00 2.71
2569 7775 2.425143 CACAACCTGGGCAGATATGT 57.575 50.000 0.00 0.00 0.00 2.29
2578 7784 2.582052 TCTAAACAAGCACAACCTGGG 58.418 47.619 0.00 0.00 0.00 4.45
2579 7785 4.647424 TTTCTAAACAAGCACAACCTGG 57.353 40.909 0.00 0.00 0.00 4.45
2580 7786 6.272318 TCAATTTCTAAACAAGCACAACCTG 58.728 36.000 0.00 0.00 0.00 4.00
2581 7787 6.096846 ACTCAATTTCTAAACAAGCACAACCT 59.903 34.615 0.00 0.00 0.00 3.50
2582 7788 6.273071 ACTCAATTTCTAAACAAGCACAACC 58.727 36.000 0.00 0.00 0.00 3.77
2583 7789 8.129211 AGTACTCAATTTCTAAACAAGCACAAC 58.871 33.333 0.00 0.00 0.00 3.32
2584 7790 8.220755 AGTACTCAATTTCTAAACAAGCACAA 57.779 30.769 0.00 0.00 0.00 3.33
2585 7791 7.801716 AGTACTCAATTTCTAAACAAGCACA 57.198 32.000 0.00 0.00 0.00 4.57
2586 7792 7.958025 GCTAGTACTCAATTTCTAAACAAGCAC 59.042 37.037 0.00 0.00 0.00 4.40
2587 7793 7.878127 AGCTAGTACTCAATTTCTAAACAAGCA 59.122 33.333 0.00 0.00 0.00 3.91
2588 7794 8.257830 AGCTAGTACTCAATTTCTAAACAAGC 57.742 34.615 0.00 0.00 0.00 4.01
2590 7796 9.555727 ACAAGCTAGTACTCAATTTCTAAACAA 57.444 29.630 0.00 0.00 0.00 2.83
2593 7799 9.871238 CCTACAAGCTAGTACTCAATTTCTAAA 57.129 33.333 0.00 0.00 0.00 1.85
2594 7800 7.980099 GCCTACAAGCTAGTACTCAATTTCTAA 59.020 37.037 0.00 0.00 0.00 2.10
2595 7801 7.342284 AGCCTACAAGCTAGTACTCAATTTCTA 59.658 37.037 0.00 0.00 42.70 2.10
2596 7802 6.155393 AGCCTACAAGCTAGTACTCAATTTCT 59.845 38.462 0.00 0.00 42.70 2.52
2597 7803 6.342111 AGCCTACAAGCTAGTACTCAATTTC 58.658 40.000 0.00 0.00 42.70 2.17
2598 7804 6.301169 AGCCTACAAGCTAGTACTCAATTT 57.699 37.500 0.00 0.00 42.70 1.82
2599 7805 5.941555 AGCCTACAAGCTAGTACTCAATT 57.058 39.130 0.00 0.00 42.70 2.32
2600 7806 5.941555 AAGCCTACAAGCTAGTACTCAAT 57.058 39.130 0.00 0.00 44.11 2.57
2601 7807 8.707796 ATATAAGCCTACAAGCTAGTACTCAA 57.292 34.615 0.00 0.00 44.11 3.02
2602 7808 9.976776 ATATATAAGCCTACAAGCTAGTACTCA 57.023 33.333 0.00 0.00 44.11 3.41
2604 7810 9.191479 CCATATATAAGCCTACAAGCTAGTACT 57.809 37.037 0.00 0.00 44.11 2.73
2605 7811 8.968969 ACCATATATAAGCCTACAAGCTAGTAC 58.031 37.037 0.00 0.00 44.11 2.73
2606 7812 9.543231 AACCATATATAAGCCTACAAGCTAGTA 57.457 33.333 0.00 0.00 44.11 1.82
2607 7813 8.314751 CAACCATATATAAGCCTACAAGCTAGT 58.685 37.037 0.00 0.00 44.11 2.57
2608 7814 8.314751 ACAACCATATATAAGCCTACAAGCTAG 58.685 37.037 0.00 0.00 44.11 3.42
2609 7815 8.202461 ACAACCATATATAAGCCTACAAGCTA 57.798 34.615 0.00 0.00 44.11 3.32
2611 7817 8.883731 CATACAACCATATATAAGCCTACAAGC 58.116 37.037 0.00 0.00 0.00 4.01
2613 7819 9.938280 GTCATACAACCATATATAAGCCTACAA 57.062 33.333 0.00 0.00 0.00 2.41
2614 7820 9.321532 AGTCATACAACCATATATAAGCCTACA 57.678 33.333 0.00 0.00 0.00 2.74
2617 7823 9.105844 AGAAGTCATACAACCATATATAAGCCT 57.894 33.333 0.00 0.00 0.00 4.58
2618 7824 9.726438 AAGAAGTCATACAACCATATATAAGCC 57.274 33.333 0.00 0.00 0.00 4.35
2633 7839 9.678941 CCCTGTTTTTCTAAAAAGAAGTCATAC 57.321 33.333 0.96 0.00 38.44 2.39
2634 7840 9.635404 TCCCTGTTTTTCTAAAAAGAAGTCATA 57.365 29.630 0.96 0.00 38.44 2.15
2635 7841 8.533569 TCCCTGTTTTTCTAAAAAGAAGTCAT 57.466 30.769 0.96 0.00 38.44 3.06
2636 7842 7.416326 GCTCCCTGTTTTTCTAAAAAGAAGTCA 60.416 37.037 0.96 0.00 38.44 3.41
2637 7843 6.918569 GCTCCCTGTTTTTCTAAAAAGAAGTC 59.081 38.462 0.96 0.00 38.44 3.01
2638 7844 6.379988 TGCTCCCTGTTTTTCTAAAAAGAAGT 59.620 34.615 0.96 0.00 38.44 3.01
2639 7845 6.697455 GTGCTCCCTGTTTTTCTAAAAAGAAG 59.303 38.462 0.96 3.14 38.44 2.85
2640 7846 6.406512 GGTGCTCCCTGTTTTTCTAAAAAGAA 60.407 38.462 0.96 0.00 38.44 2.52
2641 7847 5.068591 GGTGCTCCCTGTTTTTCTAAAAAGA 59.931 40.000 0.96 0.00 38.44 2.52
2642 7848 5.069119 AGGTGCTCCCTGTTTTTCTAAAAAG 59.931 40.000 0.00 0.00 44.08 2.27
2643 7849 4.959839 AGGTGCTCCCTGTTTTTCTAAAAA 59.040 37.500 0.00 0.00 44.08 1.94
2644 7850 4.542697 AGGTGCTCCCTGTTTTTCTAAAA 58.457 39.130 0.00 0.00 44.08 1.52
2645 7851 4.142038 GAGGTGCTCCCTGTTTTTCTAAA 58.858 43.478 0.00 0.00 46.51 1.85
2646 7852 3.497942 GGAGGTGCTCCCTGTTTTTCTAA 60.498 47.826 0.00 0.00 46.51 2.10
2647 7853 2.039879 GGAGGTGCTCCCTGTTTTTCTA 59.960 50.000 0.00 0.00 46.51 2.10
2648 7854 1.202940 GGAGGTGCTCCCTGTTTTTCT 60.203 52.381 0.00 0.00 46.51 2.52
2649 7855 1.248486 GGAGGTGCTCCCTGTTTTTC 58.752 55.000 0.00 0.00 46.51 2.29
2650 7856 3.439440 GGAGGTGCTCCCTGTTTTT 57.561 52.632 0.00 0.00 46.51 1.94
2665 7871 1.750399 CAGCAATGGAACCGGGGAG 60.750 63.158 6.32 0.00 0.00 4.30
2666 7872 2.196997 CTCAGCAATGGAACCGGGGA 62.197 60.000 6.32 0.00 0.00 4.81
2667 7873 1.750399 CTCAGCAATGGAACCGGGG 60.750 63.158 6.32 0.00 0.00 5.73
2668 7874 0.322456 TTCTCAGCAATGGAACCGGG 60.322 55.000 6.32 0.00 0.00 5.73
2669 7875 0.804989 GTTCTCAGCAATGGAACCGG 59.195 55.000 0.00 0.00 34.90 5.28
2670 7876 0.443869 CGTTCTCAGCAATGGAACCG 59.556 55.000 0.00 0.00 36.85 4.44
2671 7877 1.808411 TCGTTCTCAGCAATGGAACC 58.192 50.000 0.00 0.00 36.85 3.62
2672 7878 3.555518 GTTTCGTTCTCAGCAATGGAAC 58.444 45.455 0.00 0.00 36.83 3.62
2673 7879 2.552315 GGTTTCGTTCTCAGCAATGGAA 59.448 45.455 0.00 0.00 0.00 3.53
2674 7880 2.151202 GGTTTCGTTCTCAGCAATGGA 58.849 47.619 0.00 0.00 0.00 3.41
2675 7881 1.879380 TGGTTTCGTTCTCAGCAATGG 59.121 47.619 0.00 0.00 0.00 3.16
2676 7882 2.662791 CGTGGTTTCGTTCTCAGCAATG 60.663 50.000 0.00 0.00 0.00 2.82
2677 7883 1.531149 CGTGGTTTCGTTCTCAGCAAT 59.469 47.619 0.00 0.00 0.00 3.56
2678 7884 0.934496 CGTGGTTTCGTTCTCAGCAA 59.066 50.000 0.00 0.00 0.00 3.91
2679 7885 0.103390 TCGTGGTTTCGTTCTCAGCA 59.897 50.000 0.00 0.00 0.00 4.41
2680 7886 0.507358 GTCGTGGTTTCGTTCTCAGC 59.493 55.000 0.00 0.00 0.00 4.26
2681 7887 1.847818 TGTCGTGGTTTCGTTCTCAG 58.152 50.000 0.00 0.00 0.00 3.35
2682 7888 2.519377 ATGTCGTGGTTTCGTTCTCA 57.481 45.000 0.00 0.00 0.00 3.27
2683 7889 3.572584 ACTATGTCGTGGTTTCGTTCTC 58.427 45.455 0.00 0.00 0.00 2.87
2684 7890 3.255149 AGACTATGTCGTGGTTTCGTTCT 59.745 43.478 0.00 0.00 37.67 3.01
2685 7891 3.364023 CAGACTATGTCGTGGTTTCGTTC 59.636 47.826 0.00 0.00 37.67 3.95
2686 7892 3.005050 TCAGACTATGTCGTGGTTTCGTT 59.995 43.478 0.00 0.00 37.67 3.85
2687 7893 2.555325 TCAGACTATGTCGTGGTTTCGT 59.445 45.455 0.00 0.00 37.67 3.85
2688 7894 2.915463 GTCAGACTATGTCGTGGTTTCG 59.085 50.000 0.00 0.00 37.67 3.46
2689 7895 3.673809 GTGTCAGACTATGTCGTGGTTTC 59.326 47.826 1.31 0.00 37.67 2.78
2690 7896 3.321111 AGTGTCAGACTATGTCGTGGTTT 59.679 43.478 1.31 0.00 37.67 3.27
2691 7897 2.891580 AGTGTCAGACTATGTCGTGGTT 59.108 45.455 1.31 0.00 37.67 3.67
2692 7898 2.515854 AGTGTCAGACTATGTCGTGGT 58.484 47.619 1.31 0.00 37.67 4.16
2693 7899 3.690139 ACTAGTGTCAGACTATGTCGTGG 59.310 47.826 1.31 0.00 36.53 4.94
2694 7900 4.948608 ACTAGTGTCAGACTATGTCGTG 57.051 45.455 1.31 0.00 36.53 4.35
2695 7901 5.485620 TGTACTAGTGTCAGACTATGTCGT 58.514 41.667 5.39 0.00 36.53 4.34
2696 7902 6.418585 TTGTACTAGTGTCAGACTATGTCG 57.581 41.667 5.39 0.00 36.53 4.35
2697 7903 8.080417 TGTTTTGTACTAGTGTCAGACTATGTC 58.920 37.037 5.39 0.00 36.53 3.06
2698 7904 7.948357 TGTTTTGTACTAGTGTCAGACTATGT 58.052 34.615 5.39 0.00 36.53 2.29
2699 7905 7.542477 CCTGTTTTGTACTAGTGTCAGACTATG 59.458 40.741 5.39 0.00 36.53 2.23
2700 7906 7.309867 CCCTGTTTTGTACTAGTGTCAGACTAT 60.310 40.741 5.39 0.00 36.53 2.12
2701 7907 6.015688 CCCTGTTTTGTACTAGTGTCAGACTA 60.016 42.308 5.39 0.00 35.96 2.59
2702 7908 5.221461 CCCTGTTTTGTACTAGTGTCAGACT 60.221 44.000 5.39 0.00 38.88 3.24
2703 7909 4.989168 CCCTGTTTTGTACTAGTGTCAGAC 59.011 45.833 5.39 8.14 0.00 3.51
2704 7910 4.502604 GCCCTGTTTTGTACTAGTGTCAGA 60.503 45.833 5.39 0.00 0.00 3.27
2705 7911 3.746492 GCCCTGTTTTGTACTAGTGTCAG 59.254 47.826 5.39 5.02 0.00 3.51
2706 7912 3.389983 AGCCCTGTTTTGTACTAGTGTCA 59.610 43.478 5.39 1.95 0.00 3.58
2707 7913 4.004196 AGCCCTGTTTTGTACTAGTGTC 57.996 45.455 5.39 0.00 0.00 3.67
2708 7914 4.432980 AAGCCCTGTTTTGTACTAGTGT 57.567 40.909 5.39 0.00 0.00 3.55
2709 7915 5.358298 GAAAGCCCTGTTTTGTACTAGTG 57.642 43.478 5.39 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.