Multiple sequence alignment - TraesCS2D01G516600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G516600 chr2D 100.000 4900 0 0 1 4900 607954544 607959443 0.000000e+00 9049.0
1 TraesCS2D01G516600 chr2D 94.606 2966 99 27 583 3521 607934505 607937436 0.000000e+00 4534.0
2 TraesCS2D01G516600 chr2D 93.284 953 44 9 3521 4460 607937679 607938624 0.000000e+00 1387.0
3 TraesCS2D01G516600 chr2D 93.192 426 24 3 4479 4900 451930116 451929692 5.390000e-174 621.0
4 TraesCS2D01G516600 chr2D 92.958 426 25 3 4479 4900 320484228 320483804 2.510000e-172 616.0
5 TraesCS2D01G516600 chr2D 94.937 237 11 1 3963 4199 607969702 607969937 2.150000e-98 370.0
6 TraesCS2D01G516600 chr2D 88.079 151 16 2 4292 4441 607969956 607970105 1.400000e-40 178.0
7 TraesCS2D01G516600 chr2D 87.179 156 16 4 3802 3955 607938544 607938697 1.810000e-39 174.0
8 TraesCS2D01G516600 chr2D 97.368 76 2 0 464 539 6983885 6983960 3.980000e-26 130.0
9 TraesCS2D01G516600 chr2A 93.366 3919 158 30 583 4460 739431224 739435081 0.000000e+00 5703.0
10 TraesCS2D01G516600 chr2A 89.979 1876 129 33 2073 3928 739447906 739449742 0.000000e+00 2368.0
11 TraesCS2D01G516600 chr2A 97.091 997 27 1 583 1577 739446311 739447307 0.000000e+00 1679.0
12 TraesCS2D01G516600 chr2A 95.609 501 19 2 1567 2067 739447487 739447984 0.000000e+00 800.0
13 TraesCS2D01G516600 chr2A 93.446 534 24 8 1 527 153151072 153151601 0.000000e+00 782.0
14 TraesCS2D01G516600 chr2A 93.812 501 25 5 1 499 112494143 112493647 0.000000e+00 749.0
15 TraesCS2D01G516600 chr2A 87.179 156 16 4 3802 3955 739435001 739435154 1.810000e-39 174.0
16 TraesCS2D01G516600 chr2B 93.065 2163 107 19 2318 4460 741016804 741018943 0.000000e+00 3123.0
17 TraesCS2D01G516600 chr2B 91.901 1457 64 11 583 2033 741123834 741125242 0.000000e+00 1988.0
18 TraesCS2D01G516600 chr2B 94.127 1311 59 7 583 1887 741015511 741016809 0.000000e+00 1978.0
19 TraesCS2D01G516600 chr2B 92.369 747 49 7 3719 4464 741114356 741115095 0.000000e+00 1057.0
20 TraesCS2D01G516600 chr2B 93.651 441 24 2 2461 2900 741085317 741085754 0.000000e+00 656.0
21 TraesCS2D01G516600 chr2B 92.447 331 14 3 3346 3675 741112790 741113110 3.460000e-126 462.0
22 TraesCS2D01G516600 chr2B 82.449 490 56 14 3953 4440 741136717 741137178 7.640000e-108 401.0
23 TraesCS2D01G516600 chr2B 92.593 243 18 0 2899 3141 741085990 741086232 2.810000e-92 350.0
24 TraesCS2D01G516600 chr2B 93.868 212 11 2 3756 3967 741136491 741136700 7.910000e-83 318.0
25 TraesCS2D01G516600 chr2B 93.970 199 11 1 2058 2256 741125385 741125582 2.870000e-77 300.0
26 TraesCS2D01G516600 chr2B 94.366 71 3 1 3215 3284 741112719 741112789 1.870000e-19 108.0
27 TraesCS2D01G516600 chr2B 95.455 44 2 0 3321 3364 741121731 741121774 2.450000e-08 71.3
28 TraesCS2D01G516600 chr5D 96.996 466 10 4 1 464 482327160 482326697 0.000000e+00 780.0
29 TraesCS2D01G516600 chr5D 96.567 466 12 4 1 464 497499230 497499693 0.000000e+00 769.0
30 TraesCS2D01G516600 chr5D 92.471 425 22 6 4483 4900 23761610 23761189 2.520000e-167 599.0
31 TraesCS2D01G516600 chr5D 82.036 334 50 9 3588 3920 37189766 37190090 4.830000e-70 276.0
32 TraesCS2D01G516600 chr5D 95.349 86 4 0 467 552 549495317 549495232 2.380000e-28 137.0
33 TraesCS2D01G516600 chr3D 96.788 467 8 6 1 464 27299501 27299039 0.000000e+00 773.0
34 TraesCS2D01G516600 chr3D 94.118 425 20 3 4480 4900 552419195 552418772 4.130000e-180 641.0
35 TraesCS2D01G516600 chr3D 93.192 426 24 3 4479 4900 568188986 568189410 5.390000e-174 621.0
36 TraesCS2D01G516600 chr3D 93.301 418 20 5 4487 4900 384643247 384643660 1.170000e-170 610.0
37 TraesCS2D01G516600 chr4D 94.611 501 20 7 1 499 87367418 87366923 0.000000e+00 769.0
38 TraesCS2D01G516600 chr6A 94.012 501 23 6 1 499 406629122 406629617 0.000000e+00 752.0
39 TraesCS2D01G516600 chr6A 93.800 500 24 6 1 499 525352424 525351931 0.000000e+00 745.0
40 TraesCS2D01G516600 chr1D 93.663 505 18 6 1 504 476116101 476115610 0.000000e+00 743.0
41 TraesCS2D01G516600 chr1D 92.506 427 26 4 4479 4900 415455965 415456390 1.510000e-169 606.0
42 TraesCS2D01G516600 chr7B 93.192 426 24 3 4479 4900 392859926 392859502 5.390000e-174 621.0
43 TraesCS2D01G516600 chr7D 92.488 426 27 3 4479 4900 610206192 610205768 5.430000e-169 604.0
44 TraesCS2D01G516600 chr7D 81.712 257 14 12 296 539 25128385 25128621 3.010000e-42 183.0
45 TraesCS2D01G516600 chr5A 84.081 446 44 13 2972 3409 26152142 26152568 5.910000e-109 405.0
46 TraesCS2D01G516600 chr5A 86.364 242 22 7 2737 2975 26146530 26146763 2.260000e-63 254.0
47 TraesCS2D01G516600 chr5A 87.931 116 7 3 431 539 469265659 469265774 3.980000e-26 130.0
48 TraesCS2D01G516600 chr5A 92.683 41 3 0 542 582 556819843 556819883 5.300000e-05 60.2
49 TraesCS2D01G516600 chr5A 92.683 41 3 0 542 582 590382001 590382041 5.300000e-05 60.2
50 TraesCS2D01G516600 chr5A 97.059 34 1 0 542 575 556826638 556826605 1.910000e-04 58.4
51 TraesCS2D01G516600 chrUn 87.919 149 11 3 398 539 104749924 104750072 8.440000e-38 169.0
52 TraesCS2D01G516600 chrUn 97.500 80 2 0 467 546 95498994 95498915 2.380000e-28 137.0
53 TraesCS2D01G516600 chrUn 93.182 44 3 0 539 582 62170894 62170851 1.140000e-06 65.8
54 TraesCS2D01G516600 chrUn 93.182 44 3 0 539 582 293738375 293738418 1.140000e-06 65.8
55 TraesCS2D01G516600 chr7A 95.181 83 4 0 464 546 276405856 276405938 1.110000e-26 132.0
56 TraesCS2D01G516600 chr4B 100.000 44 0 0 539 582 64084763 64084806 1.130000e-11 82.4
57 TraesCS2D01G516600 chr6B 100.000 42 0 0 541 582 716581320 716581361 1.460000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G516600 chr2D 607954544 607959443 4899 False 9049.000000 9049 100.000000 1 4900 1 chr2D.!!$F2 4899
1 TraesCS2D01G516600 chr2D 607934505 607938697 4192 False 2031.666667 4534 91.689667 583 4460 3 chr2D.!!$F3 3877
2 TraesCS2D01G516600 chr2A 739431224 739435154 3930 False 2938.500000 5703 90.272500 583 4460 2 chr2A.!!$F2 3877
3 TraesCS2D01G516600 chr2A 739446311 739449742 3431 False 1615.666667 2368 94.226333 583 3928 3 chr2A.!!$F3 3345
4 TraesCS2D01G516600 chr2A 153151072 153151601 529 False 782.000000 782 93.446000 1 527 1 chr2A.!!$F1 526
5 TraesCS2D01G516600 chr2B 741015511 741018943 3432 False 2550.500000 3123 93.596000 583 4460 2 chr2B.!!$F1 3877
6 TraesCS2D01G516600 chr2B 741121731 741125582 3851 False 786.433333 1988 93.775333 583 3364 3 chr2B.!!$F4 2781
7 TraesCS2D01G516600 chr2B 741112719 741115095 2376 False 542.333333 1057 93.060667 3215 4464 3 chr2B.!!$F3 1249
8 TraesCS2D01G516600 chr2B 741085317 741086232 915 False 503.000000 656 93.122000 2461 3141 2 chr2B.!!$F2 680
9 TraesCS2D01G516600 chr2B 741136491 741137178 687 False 359.500000 401 88.158500 3756 4440 2 chr2B.!!$F5 684

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
513 514 0.033503 AAAGGCCCTTATGAACCGGG 60.034 55.0 6.32 0.00 41.06 5.73 F
575 576 0.608035 GCCGAACCATGGTCCTGAAA 60.608 55.0 20.07 0.00 0.00 2.69 F
580 581 1.463674 ACCATGGTCCTGAAAATCGC 58.536 50.0 13.00 0.00 0.00 4.58 F
2521 4407 0.823356 GGCACTGGAAAGGCACTCAA 60.823 55.0 0.00 0.00 38.49 3.02 F
3132 5261 0.385223 GCGTCAAGAGCTGCAACTTG 60.385 55.0 23.51 23.51 43.03 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1951 3698 1.344438 CTACTGAGTGCACCAGACCAA 59.656 52.381 30.11 16.73 35.69 3.67 R
2486 4372 1.551883 GTGCCTGATTGAATGCCCTTT 59.448 47.619 0.00 0.00 0.00 3.11 R
2553 4439 5.083122 TGTCACCAACATAATCCCAAACAT 58.917 37.500 0.00 0.00 31.20 2.71 R
3785 7385 0.445436 CAGCATGTGAACTCTTCGCC 59.555 55.000 0.00 0.00 39.38 5.54 R
4739 8398 0.103208 CCAGATCGGACACACTAGCC 59.897 60.000 0.00 0.00 36.56 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 8.739972 AGAACAATAGTTTCAAACTCAAACAGT 58.260 29.630 5.92 0.00 41.77 3.55
69 70 8.687824 AACAATAGTTTCAAACTCAAACAGTG 57.312 30.769 5.92 0.88 41.77 3.66
72 73 9.352784 CAATAGTTTCAAACTCAAACAGTGAAA 57.647 29.630 5.92 0.00 41.77 2.69
74 75 7.816945 AGTTTCAAACTCAAACAGTGAAATG 57.183 32.000 0.00 0.00 37.02 2.32
76 77 7.329226 AGTTTCAAACTCAAACAGTGAAATGTG 59.671 33.333 0.00 0.00 37.02 3.21
78 79 6.092092 TCAAACTCAAACAGTGAAATGTGTG 58.908 36.000 0.00 0.00 39.39 3.82
79 80 5.895636 AACTCAAACAGTGAAATGTGTGA 57.104 34.783 3.92 3.92 43.58 3.58
80 81 5.235305 ACTCAAACAGTGAAATGTGTGAC 57.765 39.130 0.00 0.00 41.48 3.67
81 82 4.943705 ACTCAAACAGTGAAATGTGTGACT 59.056 37.500 0.00 0.00 41.48 3.41
82 83 5.415701 ACTCAAACAGTGAAATGTGTGACTT 59.584 36.000 0.00 0.00 41.48 3.01
84 85 5.414144 TCAAACAGTGAAATGTGTGACTTCA 59.586 36.000 0.00 0.00 41.48 3.02
85 86 6.095300 TCAAACAGTGAAATGTGTGACTTCAT 59.905 34.615 0.00 0.00 41.48 2.57
86 87 5.428496 ACAGTGAAATGTGTGACTTCATG 57.572 39.130 0.00 0.00 32.08 3.07
87 88 4.224433 CAGTGAAATGTGTGACTTCATGC 58.776 43.478 0.00 0.00 32.08 4.06
88 89 4.023450 CAGTGAAATGTGTGACTTCATGCT 60.023 41.667 0.00 0.00 32.08 3.79
89 90 4.214971 AGTGAAATGTGTGACTTCATGCTC 59.785 41.667 0.00 0.00 32.08 4.26
90 91 4.023792 GTGAAATGTGTGACTTCATGCTCA 60.024 41.667 0.00 0.00 32.08 4.26
92 93 4.761235 AATGTGTGACTTCATGCTCAAG 57.239 40.909 0.00 0.00 0.00 3.02
93 94 1.875514 TGTGTGACTTCATGCTCAAGC 59.124 47.619 0.00 0.00 42.50 4.01
96 97 3.748048 GTGTGACTTCATGCTCAAGCTAA 59.252 43.478 3.32 0.00 42.66 3.09
97 98 4.214119 GTGTGACTTCATGCTCAAGCTAAA 59.786 41.667 3.32 0.00 42.66 1.85
98 99 5.005740 TGTGACTTCATGCTCAAGCTAAAT 58.994 37.500 3.32 0.00 42.66 1.40
99 100 5.474532 TGTGACTTCATGCTCAAGCTAAATT 59.525 36.000 3.32 0.00 42.66 1.82
100 101 6.026513 GTGACTTCATGCTCAAGCTAAATTC 58.973 40.000 3.32 0.74 42.66 2.17
101 102 5.124457 TGACTTCATGCTCAAGCTAAATTCC 59.876 40.000 3.32 0.00 42.66 3.01
104 105 4.847198 TCATGCTCAAGCTAAATTCCTGA 58.153 39.130 3.32 0.00 42.66 3.86
105 106 4.880120 TCATGCTCAAGCTAAATTCCTGAG 59.120 41.667 3.32 5.18 42.66 3.35
106 107 3.614092 TGCTCAAGCTAAATTCCTGAGG 58.386 45.455 10.50 0.00 42.66 3.86
107 108 2.948315 GCTCAAGCTAAATTCCTGAGGG 59.052 50.000 10.50 0.00 38.21 4.30
109 110 4.593956 CTCAAGCTAAATTCCTGAGGGTT 58.406 43.478 0.00 0.00 0.00 4.11
111 112 6.134535 TCAAGCTAAATTCCTGAGGGTTAA 57.865 37.500 0.00 0.00 0.00 2.01
112 113 6.731467 TCAAGCTAAATTCCTGAGGGTTAAT 58.269 36.000 0.00 0.00 0.00 1.40
113 114 7.867921 TCAAGCTAAATTCCTGAGGGTTAATA 58.132 34.615 0.00 0.00 0.00 0.98
114 115 7.993183 TCAAGCTAAATTCCTGAGGGTTAATAG 59.007 37.037 0.00 0.00 0.00 1.73
115 116 6.842676 AGCTAAATTCCTGAGGGTTAATAGG 58.157 40.000 0.00 0.00 0.00 2.57
117 118 7.295911 AGCTAAATTCCTGAGGGTTAATAGGAT 59.704 37.037 0.00 0.00 38.98 3.24
118 119 7.945109 GCTAAATTCCTGAGGGTTAATAGGATT 59.055 37.037 0.00 0.00 38.98 3.01
119 120 9.289782 CTAAATTCCTGAGGGTTAATAGGATTG 57.710 37.037 0.00 0.00 38.98 2.67
121 122 5.888982 TCCTGAGGGTTAATAGGATTGAC 57.111 43.478 0.00 0.00 34.54 3.18
124 125 6.043243 TCCTGAGGGTTAATAGGATTGACATC 59.957 42.308 0.00 0.00 34.54 3.06
125 126 6.043706 CCTGAGGGTTAATAGGATTGACATCT 59.956 42.308 0.00 0.00 31.91 2.90
126 127 7.420680 CCTGAGGGTTAATAGGATTGACATCTT 60.421 40.741 0.00 0.00 31.91 2.40
128 129 8.429641 TGAGGGTTAATAGGATTGACATCTTAC 58.570 37.037 0.00 0.00 0.00 2.34
129 130 8.568617 AGGGTTAATAGGATTGACATCTTACT 57.431 34.615 0.00 0.00 0.00 2.24
130 131 9.670442 AGGGTTAATAGGATTGACATCTTACTA 57.330 33.333 0.00 0.00 0.00 1.82
151 152 9.781834 TTACTATTGTCAAGAAAACAACAAGTG 57.218 29.630 12.50 0.00 39.29 3.16
152 153 8.050778 ACTATTGTCAAGAAAACAACAAGTGA 57.949 30.769 0.00 0.00 39.29 3.41
154 155 7.816945 ATTGTCAAGAAAACAACAAGTGAAG 57.183 32.000 0.00 0.00 39.29 3.02
155 156 6.567687 TGTCAAGAAAACAACAAGTGAAGA 57.432 33.333 0.00 0.00 0.00 2.87
156 157 6.378582 TGTCAAGAAAACAACAAGTGAAGAC 58.621 36.000 0.00 0.00 0.00 3.01
157 158 6.206634 TGTCAAGAAAACAACAAGTGAAGACT 59.793 34.615 0.00 0.00 0.00 3.24
158 159 7.084486 GTCAAGAAAACAACAAGTGAAGACTT 58.916 34.615 0.00 0.00 43.63 3.01
168 169 3.113260 AGTGAAGACTTGGAAACGAGG 57.887 47.619 0.00 0.00 46.96 4.63
169 170 2.143925 GTGAAGACTTGGAAACGAGGG 58.856 52.381 0.00 0.00 46.96 4.30
170 171 2.043992 TGAAGACTTGGAAACGAGGGA 58.956 47.619 0.00 0.00 46.96 4.20
171 172 2.037251 TGAAGACTTGGAAACGAGGGAG 59.963 50.000 0.00 0.00 46.96 4.30
172 173 2.011122 AGACTTGGAAACGAGGGAGA 57.989 50.000 0.00 0.00 46.96 3.71
174 175 2.907042 AGACTTGGAAACGAGGGAGAAT 59.093 45.455 0.00 0.00 46.96 2.40
176 177 4.160626 AGACTTGGAAACGAGGGAGAATAG 59.839 45.833 0.00 0.00 46.96 1.73
177 178 4.094476 ACTTGGAAACGAGGGAGAATAGA 58.906 43.478 0.00 0.00 46.96 1.98
181 182 3.431905 GGAAACGAGGGAGAATAGAACCC 60.432 52.174 0.00 0.00 43.55 4.11
186 187 2.912690 GGGAGAATAGAACCCGGAAG 57.087 55.000 0.73 0.00 34.03 3.46
187 188 2.117051 GGGAGAATAGAACCCGGAAGT 58.883 52.381 0.73 0.00 34.03 3.01
188 189 2.504585 GGGAGAATAGAACCCGGAAGTT 59.495 50.000 0.73 0.00 34.03 2.66
189 190 3.708121 GGGAGAATAGAACCCGGAAGTTA 59.292 47.826 0.73 0.00 34.03 2.24
190 191 4.162888 GGGAGAATAGAACCCGGAAGTTAA 59.837 45.833 0.73 0.00 34.03 2.01
191 192 5.358090 GGAGAATAGAACCCGGAAGTTAAG 58.642 45.833 0.73 0.00 0.00 1.85
192 193 4.767478 AGAATAGAACCCGGAAGTTAAGC 58.233 43.478 0.73 0.00 0.00 3.09
193 194 2.660189 TAGAACCCGGAAGTTAAGCG 57.340 50.000 0.73 0.00 0.00 4.68
194 195 0.683412 AGAACCCGGAAGTTAAGCGT 59.317 50.000 0.73 0.00 0.00 5.07
195 196 0.794473 GAACCCGGAAGTTAAGCGTG 59.206 55.000 0.73 0.00 0.00 5.34
196 197 1.232621 AACCCGGAAGTTAAGCGTGC 61.233 55.000 0.73 0.00 0.00 5.34
198 199 1.359459 CCCGGAAGTTAAGCGTGCTC 61.359 60.000 0.73 0.00 0.00 4.26
199 200 0.669318 CCGGAAGTTAAGCGTGCTCA 60.669 55.000 0.00 0.00 0.00 4.26
200 201 0.716108 CGGAAGTTAAGCGTGCTCAG 59.284 55.000 0.00 0.00 0.00 3.35
201 202 1.079503 GGAAGTTAAGCGTGCTCAGG 58.920 55.000 0.00 0.00 0.00 3.86
202 203 0.444260 GAAGTTAAGCGTGCTCAGGC 59.556 55.000 6.46 6.46 42.05 4.85
208 209 4.385405 GCGTGCTCAGGCTGGAGT 62.385 66.667 15.73 0.00 38.98 3.85
209 210 3.006756 GCGTGCTCAGGCTGGAGTA 62.007 63.158 15.73 7.59 38.98 2.59
210 211 1.140589 CGTGCTCAGGCTGGAGTAG 59.859 63.158 15.73 5.57 39.59 2.57
211 212 1.599606 CGTGCTCAGGCTGGAGTAGT 61.600 60.000 15.73 0.00 39.59 2.73
212 213 0.108424 GTGCTCAGGCTGGAGTAGTG 60.108 60.000 15.73 0.00 39.59 2.74
213 214 0.251787 TGCTCAGGCTGGAGTAGTGA 60.252 55.000 15.73 0.00 39.59 3.41
214 215 0.459489 GCTCAGGCTGGAGTAGTGAG 59.541 60.000 15.73 3.11 38.14 3.51
215 216 1.957591 GCTCAGGCTGGAGTAGTGAGA 60.958 57.143 15.73 0.00 37.43 3.27
216 217 2.023673 CTCAGGCTGGAGTAGTGAGAG 58.976 57.143 15.73 0.00 37.43 3.20
217 218 1.110442 CAGGCTGGAGTAGTGAGAGG 58.890 60.000 6.61 0.00 0.00 3.69
218 219 1.003646 AGGCTGGAGTAGTGAGAGGA 58.996 55.000 0.00 0.00 0.00 3.71
219 220 1.573376 AGGCTGGAGTAGTGAGAGGAT 59.427 52.381 0.00 0.00 0.00 3.24
220 221 1.686052 GGCTGGAGTAGTGAGAGGATG 59.314 57.143 0.00 0.00 0.00 3.51
221 222 1.686052 GCTGGAGTAGTGAGAGGATGG 59.314 57.143 0.00 0.00 0.00 3.51
223 224 1.646447 TGGAGTAGTGAGAGGATGGGT 59.354 52.381 0.00 0.00 0.00 4.51
224 225 2.035632 GGAGTAGTGAGAGGATGGGTG 58.964 57.143 0.00 0.00 0.00 4.61
225 226 2.358300 GGAGTAGTGAGAGGATGGGTGA 60.358 54.545 0.00 0.00 0.00 4.02
226 227 2.691011 GAGTAGTGAGAGGATGGGTGAC 59.309 54.545 0.00 0.00 0.00 3.67
238 239 3.308705 GGTGACCGTCCGGGAAGT 61.309 66.667 10.91 4.99 39.97 3.01
239 240 2.739132 GTGACCGTCCGGGAAGTT 59.261 61.111 10.91 0.00 39.97 2.66
240 241 1.535204 GGTGACCGTCCGGGAAGTTA 61.535 60.000 10.91 0.00 39.97 2.24
241 242 0.108945 GTGACCGTCCGGGAAGTTAG 60.109 60.000 10.91 0.00 39.97 2.34
243 244 1.109609 GACCGTCCGGGAAGTTAGAT 58.890 55.000 10.91 0.00 39.97 1.98
244 245 0.822164 ACCGTCCGGGAAGTTAGATG 59.178 55.000 10.91 0.00 39.97 2.90
245 246 1.108776 CCGTCCGGGAAGTTAGATGA 58.891 55.000 0.00 0.00 38.47 2.92
246 247 1.687123 CCGTCCGGGAAGTTAGATGAT 59.313 52.381 0.00 0.00 38.47 2.45
247 248 2.102588 CCGTCCGGGAAGTTAGATGATT 59.897 50.000 0.00 0.00 38.47 2.57
248 249 3.431766 CCGTCCGGGAAGTTAGATGATTT 60.432 47.826 0.00 0.00 38.47 2.17
249 250 3.555956 CGTCCGGGAAGTTAGATGATTTG 59.444 47.826 0.00 0.00 0.00 2.32
250 251 3.877508 GTCCGGGAAGTTAGATGATTTGG 59.122 47.826 0.00 0.00 0.00 3.28
251 252 3.778075 TCCGGGAAGTTAGATGATTTGGA 59.222 43.478 0.00 0.00 0.00 3.53
252 253 4.226394 TCCGGGAAGTTAGATGATTTGGAA 59.774 41.667 0.00 0.00 0.00 3.53
253 254 5.104109 TCCGGGAAGTTAGATGATTTGGAAT 60.104 40.000 0.00 0.00 0.00 3.01
255 256 5.822519 CGGGAAGTTAGATGATTTGGAATGA 59.177 40.000 0.00 0.00 0.00 2.57
256 257 6.488006 CGGGAAGTTAGATGATTTGGAATGAT 59.512 38.462 0.00 0.00 0.00 2.45
257 258 7.521099 CGGGAAGTTAGATGATTTGGAATGATG 60.521 40.741 0.00 0.00 0.00 3.07
258 259 7.503566 GGGAAGTTAGATGATTTGGAATGATGA 59.496 37.037 0.00 0.00 0.00 2.92
260 261 8.461249 AAGTTAGATGATTTGGAATGATGAGG 57.539 34.615 0.00 0.00 0.00 3.86
261 262 7.002879 AGTTAGATGATTTGGAATGATGAGGG 58.997 38.462 0.00 0.00 0.00 4.30
262 263 5.399052 AGATGATTTGGAATGATGAGGGT 57.601 39.130 0.00 0.00 0.00 4.34
263 264 5.138276 AGATGATTTGGAATGATGAGGGTG 58.862 41.667 0.00 0.00 0.00 4.61
264 265 4.589647 TGATTTGGAATGATGAGGGTGA 57.410 40.909 0.00 0.00 0.00 4.02
265 266 5.133383 TGATTTGGAATGATGAGGGTGAT 57.867 39.130 0.00 0.00 0.00 3.06
267 268 6.671605 TGATTTGGAATGATGAGGGTGATTA 58.328 36.000 0.00 0.00 0.00 1.75
268 269 6.774170 TGATTTGGAATGATGAGGGTGATTAG 59.226 38.462 0.00 0.00 0.00 1.73
269 270 5.974156 TTGGAATGATGAGGGTGATTAGA 57.026 39.130 0.00 0.00 0.00 2.10
270 271 5.557576 TGGAATGATGAGGGTGATTAGAG 57.442 43.478 0.00 0.00 0.00 2.43
271 272 5.218959 TGGAATGATGAGGGTGATTAGAGA 58.781 41.667 0.00 0.00 0.00 3.10
272 273 5.848369 TGGAATGATGAGGGTGATTAGAGAT 59.152 40.000 0.00 0.00 0.00 2.75
274 275 7.513781 TGGAATGATGAGGGTGATTAGAGATTA 59.486 37.037 0.00 0.00 0.00 1.75
275 276 8.040132 GGAATGATGAGGGTGATTAGAGATTAG 58.960 40.741 0.00 0.00 0.00 1.73
276 277 8.733092 AATGATGAGGGTGATTAGAGATTAGA 57.267 34.615 0.00 0.00 0.00 2.10
277 278 7.773489 TGATGAGGGTGATTAGAGATTAGAG 57.227 40.000 0.00 0.00 0.00 2.43
278 279 6.723515 TGATGAGGGTGATTAGAGATTAGAGG 59.276 42.308 0.00 0.00 0.00 3.69
279 280 6.031964 TGAGGGTGATTAGAGATTAGAGGT 57.968 41.667 0.00 0.00 0.00 3.85
280 281 6.444704 TGAGGGTGATTAGAGATTAGAGGTT 58.555 40.000 0.00 0.00 0.00 3.50
282 283 8.065627 TGAGGGTGATTAGAGATTAGAGGTTAA 58.934 37.037 0.00 0.00 0.00 2.01
283 284 8.855804 AGGGTGATTAGAGATTAGAGGTTAAA 57.144 34.615 0.00 0.00 0.00 1.52
284 285 9.453830 AGGGTGATTAGAGATTAGAGGTTAAAT 57.546 33.333 0.00 0.00 0.00 1.40
291 292 9.823647 TTAGAGATTAGAGGTTAAATTGAGCAG 57.176 33.333 0.00 0.00 0.00 4.24
292 293 7.856415 AGAGATTAGAGGTTAAATTGAGCAGT 58.144 34.615 0.00 0.00 0.00 4.40
293 294 7.768120 AGAGATTAGAGGTTAAATTGAGCAGTG 59.232 37.037 0.00 0.00 0.00 3.66
296 297 7.615582 TTAGAGGTTAAATTGAGCAGTGATG 57.384 36.000 0.00 0.00 0.00 3.07
298 299 5.879223 AGAGGTTAAATTGAGCAGTGATGAG 59.121 40.000 0.00 0.00 0.00 2.90
301 302 2.431954 AATTGAGCAGTGATGAGGGG 57.568 50.000 0.00 0.00 0.00 4.79
303 304 0.325933 TTGAGCAGTGATGAGGGGTG 59.674 55.000 0.00 0.00 0.00 4.61
304 305 0.545071 TGAGCAGTGATGAGGGGTGA 60.545 55.000 0.00 0.00 0.00 4.02
306 307 1.211457 GAGCAGTGATGAGGGGTGATT 59.789 52.381 0.00 0.00 0.00 2.57
308 309 2.437281 AGCAGTGATGAGGGGTGATTAG 59.563 50.000 0.00 0.00 0.00 1.73
311 312 3.963374 CAGTGATGAGGGGTGATTAGAGA 59.037 47.826 0.00 0.00 0.00 3.10
312 313 4.592351 CAGTGATGAGGGGTGATTAGAGAT 59.408 45.833 0.00 0.00 0.00 2.75
313 314 5.071519 CAGTGATGAGGGGTGATTAGAGATT 59.928 44.000 0.00 0.00 0.00 2.40
314 315 6.268617 CAGTGATGAGGGGTGATTAGAGATTA 59.731 42.308 0.00 0.00 0.00 1.75
315 316 6.496565 AGTGATGAGGGGTGATTAGAGATTAG 59.503 42.308 0.00 0.00 0.00 1.73
316 317 6.495181 GTGATGAGGGGTGATTAGAGATTAGA 59.505 42.308 0.00 0.00 0.00 2.10
317 318 6.723515 TGATGAGGGGTGATTAGAGATTAGAG 59.276 42.308 0.00 0.00 0.00 2.43
318 319 5.398236 TGAGGGGTGATTAGAGATTAGAGG 58.602 45.833 0.00 0.00 0.00 3.69
319 320 5.103043 TGAGGGGTGATTAGAGATTAGAGGT 60.103 44.000 0.00 0.00 0.00 3.85
321 322 6.935036 AGGGGTGATTAGAGATTAGAGGTTA 58.065 40.000 0.00 0.00 0.00 2.85
322 323 7.371043 AGGGGTGATTAGAGATTAGAGGTTAA 58.629 38.462 0.00 0.00 0.00 2.01
323 324 7.849904 AGGGGTGATTAGAGATTAGAGGTTAAA 59.150 37.037 0.00 0.00 0.00 1.52
324 325 8.491958 GGGGTGATTAGAGATTAGAGGTTAAAA 58.508 37.037 0.00 0.00 0.00 1.52
402 403 9.470399 AATCATAAAATTTCCTTTAGTACCGGT 57.530 29.630 13.98 13.98 0.00 5.28
404 405 8.732531 TCATAAAATTTCCTTTAGTACCGGTTG 58.267 33.333 15.04 0.00 0.00 3.77
406 407 7.770366 AAAATTTCCTTTAGTACCGGTTGAT 57.230 32.000 15.04 0.95 0.00 2.57
407 408 6.753107 AATTTCCTTTAGTACCGGTTGATG 57.247 37.500 15.04 0.00 0.00 3.07
408 409 4.895668 TTCCTTTAGTACCGGTTGATGT 57.104 40.909 15.04 0.00 0.00 3.06
411 412 5.723295 TCCTTTAGTACCGGTTGATGTTAC 58.277 41.667 15.04 1.99 0.00 2.50
413 414 5.480642 TTTAGTACCGGTTGATGTTACCA 57.519 39.130 15.04 0.00 35.31 3.25
414 415 5.480642 TTAGTACCGGTTGATGTTACCAA 57.519 39.130 15.04 0.00 35.31 3.67
420 421 2.188062 GTTGATGTTACCAACCGGGA 57.812 50.000 6.32 0.00 41.15 5.14
421 422 1.808343 GTTGATGTTACCAACCGGGAC 59.192 52.381 6.32 0.00 41.15 4.46
422 423 1.354101 TGATGTTACCAACCGGGACT 58.646 50.000 6.32 0.00 41.15 3.85
423 424 2.538222 TGATGTTACCAACCGGGACTA 58.462 47.619 6.32 0.00 41.15 2.59
424 425 2.905085 TGATGTTACCAACCGGGACTAA 59.095 45.455 6.32 0.00 41.15 2.24
425 426 3.327172 TGATGTTACCAACCGGGACTAAA 59.673 43.478 6.32 0.00 41.15 1.85
426 427 3.405823 TGTTACCAACCGGGACTAAAG 57.594 47.619 6.32 0.00 41.15 1.85
428 429 2.028561 TACCAACCGGGACTAAAGGT 57.971 50.000 6.32 5.18 41.15 3.50
429 430 0.399075 ACCAACCGGGACTAAAGGTG 59.601 55.000 6.32 0.00 41.15 4.00
432 433 0.689055 AACCGGGACTAAAGGTGGAC 59.311 55.000 6.32 0.00 38.44 4.02
433 434 1.196766 ACCGGGACTAAAGGTGGACC 61.197 60.000 6.32 0.00 36.81 4.46
445 446 3.636231 TGGACCTCCAGGCAACGG 61.636 66.667 0.00 0.00 42.01 4.44
456 457 3.443045 GCAACGGCCACATGGAGG 61.443 66.667 2.24 0.00 37.39 4.30
462 463 2.037847 GCCACATGGAGGGCCTTT 59.962 61.111 7.89 0.00 44.53 3.11
463 464 1.306296 GCCACATGGAGGGCCTTTA 59.694 57.895 7.89 0.00 44.53 1.85
464 465 1.037579 GCCACATGGAGGGCCTTTAC 61.038 60.000 7.89 1.66 44.53 2.01
466 467 1.463674 CACATGGAGGGCCTTTACAC 58.536 55.000 7.89 0.00 34.31 2.90
467 468 1.004745 CACATGGAGGGCCTTTACACT 59.995 52.381 7.89 0.00 34.31 3.55
468 469 1.710809 ACATGGAGGGCCTTTACACTT 59.289 47.619 7.89 0.00 34.31 3.16
469 470 2.110011 ACATGGAGGGCCTTTACACTTT 59.890 45.455 7.89 0.00 34.31 2.66
470 471 3.332485 ACATGGAGGGCCTTTACACTTTA 59.668 43.478 7.89 0.00 34.31 1.85
472 473 2.983898 TGGAGGGCCTTTACACTTTAGT 59.016 45.455 7.89 0.00 34.31 2.24
473 474 3.008704 TGGAGGGCCTTTACACTTTAGTC 59.991 47.826 7.89 0.00 34.31 2.59
474 475 3.607741 GAGGGCCTTTACACTTTAGTCC 58.392 50.000 7.89 0.00 0.00 3.85
475 476 2.307980 AGGGCCTTTACACTTTAGTCCC 59.692 50.000 0.00 0.00 0.00 4.46
476 477 2.353323 GGCCTTTACACTTTAGTCCCG 58.647 52.381 0.00 0.00 0.00 5.14
477 478 2.353323 GCCTTTACACTTTAGTCCCGG 58.647 52.381 0.00 0.00 0.00 5.73
478 479 2.289882 GCCTTTACACTTTAGTCCCGGT 60.290 50.000 0.00 0.00 0.00 5.28
479 480 3.808265 GCCTTTACACTTTAGTCCCGGTT 60.808 47.826 0.00 0.00 0.00 4.44
480 481 3.999001 CCTTTACACTTTAGTCCCGGTTC 59.001 47.826 0.00 0.00 0.00 3.62
481 482 3.683365 TTACACTTTAGTCCCGGTTCC 57.317 47.619 0.00 0.00 0.00 3.62
482 483 1.426751 ACACTTTAGTCCCGGTTCCA 58.573 50.000 0.00 0.00 0.00 3.53
483 484 1.346722 ACACTTTAGTCCCGGTTCCAG 59.653 52.381 0.00 0.00 0.00 3.86
485 486 2.038033 CACTTTAGTCCCGGTTCCAGAA 59.962 50.000 0.00 0.00 0.00 3.02
486 487 2.038164 ACTTTAGTCCCGGTTCCAGAAC 59.962 50.000 0.00 1.77 40.45 3.01
496 497 2.845363 GTTCCAGAACCGGGACTAAA 57.155 50.000 6.32 0.06 35.36 1.85
497 498 2.696506 GTTCCAGAACCGGGACTAAAG 58.303 52.381 6.32 0.00 35.36 1.85
499 500 0.392595 CCAGAACCGGGACTAAAGGC 60.393 60.000 6.32 0.00 0.00 4.35
500 501 0.392595 CAGAACCGGGACTAAAGGCC 60.393 60.000 6.32 0.00 0.00 5.19
503 504 1.138228 AACCGGGACTAAAGGCCCTT 61.138 55.000 18.97 4.45 42.40 3.95
505 506 1.137697 CCGGGACTAAAGGCCCTTAT 58.862 55.000 18.97 0.00 42.40 1.73
506 507 1.202770 CCGGGACTAAAGGCCCTTATG 60.203 57.143 18.97 3.00 42.40 1.90
509 510 3.552875 GGGACTAAAGGCCCTTATGAAC 58.447 50.000 14.19 0.00 41.31 3.18
513 514 0.033503 AAAGGCCCTTATGAACCGGG 60.034 55.000 6.32 0.00 41.06 5.73
514 515 0.917333 AAGGCCCTTATGAACCGGGA 60.917 55.000 6.32 0.00 40.55 5.14
516 517 1.632965 GGCCCTTATGAACCGGGACT 61.633 60.000 6.32 0.00 43.05 3.85
517 518 1.125633 GCCCTTATGAACCGGGACTA 58.874 55.000 6.32 0.00 40.55 2.59
518 519 1.487558 GCCCTTATGAACCGGGACTAA 59.512 52.381 6.32 0.00 40.55 2.24
520 521 3.805207 CCCTTATGAACCGGGACTAAAG 58.195 50.000 6.32 3.70 40.55 1.85
521 522 3.453353 CCCTTATGAACCGGGACTAAAGA 59.547 47.826 6.32 0.00 40.55 2.52
522 523 4.439968 CCTTATGAACCGGGACTAAAGAC 58.560 47.826 6.32 0.00 0.00 3.01
523 524 4.439968 CTTATGAACCGGGACTAAAGACC 58.560 47.826 6.32 0.00 0.00 3.85
525 526 1.273759 GAACCGGGACTAAAGACCCT 58.726 55.000 6.32 0.00 45.84 4.34
526 527 1.627329 GAACCGGGACTAAAGACCCTT 59.373 52.381 6.32 4.28 45.84 3.95
527 528 1.738474 ACCGGGACTAAAGACCCTTT 58.262 50.000 6.32 0.00 45.84 3.11
528 529 2.060275 ACCGGGACTAAAGACCCTTTT 58.940 47.619 6.32 0.00 45.84 2.27
529 530 2.444388 ACCGGGACTAAAGACCCTTTTT 59.556 45.455 6.32 0.00 45.84 1.94
530 531 3.079578 CCGGGACTAAAGACCCTTTTTC 58.920 50.000 14.31 0.00 45.84 2.29
531 532 3.244805 CCGGGACTAAAGACCCTTTTTCT 60.245 47.826 14.31 0.00 45.84 2.52
532 533 4.019950 CCGGGACTAAAGACCCTTTTTCTA 60.020 45.833 14.31 0.00 45.84 2.10
535 536 6.071165 CGGGACTAAAGACCCTTTTTCTACTA 60.071 42.308 14.31 0.00 45.84 1.82
536 537 7.329499 GGGACTAAAGACCCTTTTTCTACTAG 58.671 42.308 9.90 0.00 44.84 2.57
537 538 7.038445 GGGACTAAAGACCCTTTTTCTACTAGT 60.038 40.741 9.90 0.00 44.84 2.57
538 539 7.818446 GGACTAAAGACCCTTTTTCTACTAGTG 59.182 40.741 5.39 0.00 28.78 2.74
540 541 8.366401 ACTAAAGACCCTTTTTCTACTAGTGTC 58.634 37.037 5.39 0.79 0.00 3.67
542 543 6.347859 AGACCCTTTTTCTACTAGTGTCTG 57.652 41.667 5.39 0.00 0.00 3.51
543 544 5.246429 AGACCCTTTTTCTACTAGTGTCTGG 59.754 44.000 5.39 0.00 0.00 3.86
544 545 5.152934 ACCCTTTTTCTACTAGTGTCTGGA 58.847 41.667 5.39 0.00 0.00 3.86
545 546 5.011840 ACCCTTTTTCTACTAGTGTCTGGAC 59.988 44.000 5.39 0.00 0.00 4.02
546 547 5.480205 CCTTTTTCTACTAGTGTCTGGACC 58.520 45.833 5.39 0.00 0.00 4.46
547 548 5.011738 CCTTTTTCTACTAGTGTCTGGACCA 59.988 44.000 5.39 0.00 0.00 4.02
548 549 6.295916 CCTTTTTCTACTAGTGTCTGGACCAT 60.296 42.308 5.39 0.00 0.00 3.55
549 550 5.661056 TTTCTACTAGTGTCTGGACCATG 57.339 43.478 5.39 0.00 0.00 3.66
550 551 3.632333 TCTACTAGTGTCTGGACCATGG 58.368 50.000 11.19 11.19 0.00 3.66
552 553 1.203313 ACTAGTGTCTGGACCATGGGT 60.203 52.381 18.09 0.99 39.44 4.51
553 554 1.909302 CTAGTGTCTGGACCATGGGTT 59.091 52.381 18.09 0.00 35.25 4.11
554 555 0.693049 AGTGTCTGGACCATGGGTTC 59.307 55.000 18.09 5.13 35.25 3.62
555 556 0.673644 GTGTCTGGACCATGGGTTCG 60.674 60.000 18.09 1.70 35.25 3.95
556 557 1.078426 GTCTGGACCATGGGTTCGG 60.078 63.158 18.09 9.98 38.90 4.30
557 558 2.438434 CTGGACCATGGGTTCGGC 60.438 66.667 18.09 0.00 35.25 5.54
558 559 3.995506 CTGGACCATGGGTTCGGCC 62.996 68.421 18.09 7.78 35.25 6.13
561 562 3.615509 GACCATGGGTTCGGCCGAA 62.616 63.158 35.81 35.81 35.25 4.30
568 569 2.359478 GTTCGGCCGAACCATGGT 60.359 61.111 46.28 13.00 46.21 3.55
569 570 2.046700 TTCGGCCGAACCATGGTC 60.047 61.111 35.81 10.90 39.03 4.02
570 571 3.615509 TTCGGCCGAACCATGGTCC 62.616 63.158 35.81 14.14 39.03 4.46
572 573 2.438434 GGCCGAACCATGGTCCTG 60.438 66.667 20.07 10.85 38.86 3.86
573 574 2.668632 GCCGAACCATGGTCCTGA 59.331 61.111 20.07 0.00 0.00 3.86
575 576 0.608035 GCCGAACCATGGTCCTGAAA 60.608 55.000 20.07 0.00 0.00 2.69
576 577 1.904287 CCGAACCATGGTCCTGAAAA 58.096 50.000 20.07 0.00 0.00 2.29
577 578 2.446435 CCGAACCATGGTCCTGAAAAT 58.554 47.619 20.07 0.00 0.00 1.82
578 579 2.423538 CCGAACCATGGTCCTGAAAATC 59.576 50.000 20.07 8.40 0.00 2.17
579 580 2.095853 CGAACCATGGTCCTGAAAATCG 59.904 50.000 20.07 16.91 0.00 3.34
580 581 1.463674 ACCATGGTCCTGAAAATCGC 58.536 50.000 13.00 0.00 0.00 4.58
615 2137 8.763356 GCAAATCAATTTTCATGTTGTTACTCA 58.237 29.630 0.00 0.00 0.00 3.41
691 2233 2.297315 CAGAACTGTGTCTGTGCCTCTA 59.703 50.000 10.09 0.00 40.22 2.43
725 2267 8.885494 AATATAACGGTTTATGCATGCATTTT 57.115 26.923 36.23 17.81 37.82 1.82
1066 2611 3.058983 TCACTGTTTCATTGCGTGCTAAG 60.059 43.478 0.00 0.00 0.00 2.18
1349 2894 9.524106 GGGGTATTTGCAGTGTTAAATATTAAC 57.476 33.333 13.91 6.13 33.02 2.01
1369 2914 7.490962 TTAACCTTTGTGTCTGTTACTCATG 57.509 36.000 0.00 0.00 31.96 3.07
1951 3698 8.265055 ACACCTTTACATAATATGCTGTACTGT 58.735 33.333 0.00 0.00 0.00 3.55
2098 3971 7.224167 GGAAACCTACATCGGAACTTTACTATG 59.776 40.741 0.00 0.00 0.00 2.23
2521 4407 0.823356 GGCACTGGAAAGGCACTCAA 60.823 55.000 0.00 0.00 38.49 3.02
2553 4439 3.006859 TCTCTCGATTTGGAAACTCAGCA 59.993 43.478 0.00 0.00 0.00 4.41
2580 4466 4.735369 TGGGATTATGTTGGTGACAGTTT 58.265 39.130 0.00 0.00 42.62 2.66
2650 4536 5.661056 TCAGTTCGAAGTGTGAATATCCT 57.339 39.130 27.61 2.07 0.00 3.24
2833 4719 7.770801 TCTTAACAGATTGTGGATGAATACG 57.229 36.000 0.00 0.00 0.00 3.06
3056 5185 1.195674 GAAGCTCTTTTGTCAGACGCC 59.804 52.381 0.00 0.00 0.00 5.68
3062 5191 2.872245 TCTTTTGTCAGACGCCAAGAAG 59.128 45.455 6.47 0.00 0.00 2.85
3132 5261 0.385223 GCGTCAAGAGCTGCAACTTG 60.385 55.000 23.51 23.51 43.03 3.16
3631 6026 6.980978 TGAAAGATGATACGATTCTTGACCTC 59.019 38.462 0.00 0.00 30.41 3.85
3744 7344 4.826274 TGTCCTATATAATCCCTGCAGC 57.174 45.455 8.66 0.00 0.00 5.25
3854 7454 0.548031 TGGCCATGGAGTCAGATTCC 59.452 55.000 18.40 4.95 35.20 3.01
3928 7529 6.369059 ACTTTGCTAGTATGAATGCATGAC 57.631 37.500 0.00 0.00 34.56 3.06
3992 7624 3.541996 TCTGACTTTGTGTGAGAAGCA 57.458 42.857 0.00 0.00 36.02 3.91
4067 7713 6.425114 TCTGATACAGTCTCAGCAAGAAAAAC 59.575 38.462 10.48 0.00 39.98 2.43
4079 7725 8.627208 TCAGCAAGAAAAACTAGAATCTGATT 57.373 30.769 1.81 1.81 0.00 2.57
4138 7784 4.513442 TCAGGAATGCACACTACATAACC 58.487 43.478 0.00 0.00 0.00 2.85
4276 7932 6.131544 ACATTTTGTCCGATATGGTTTAGC 57.868 37.500 0.00 0.00 39.52 3.09
4277 7933 5.885912 ACATTTTGTCCGATATGGTTTAGCT 59.114 36.000 0.00 0.00 39.52 3.32
4280 7936 7.925043 TTTTGTCCGATATGGTTTAGCTTTA 57.075 32.000 0.00 0.00 39.52 1.85
4449 8108 4.606255 AGATTCTGGAAAGGGGTAAAAGGA 59.394 41.667 0.00 0.00 0.00 3.36
4460 8119 4.354087 AGGGGTAAAAGGACATCAAGAACT 59.646 41.667 0.00 0.00 0.00 3.01
4466 8125 7.546316 GGTAAAAGGACATCAAGAACTAGAGAC 59.454 40.741 0.00 0.00 0.00 3.36
4467 8126 5.669164 AAGGACATCAAGAACTAGAGACC 57.331 43.478 0.00 0.00 0.00 3.85
4469 8128 3.440228 GACATCAAGAACTAGAGACCGC 58.560 50.000 0.00 0.00 0.00 5.68
4471 8130 3.182967 CATCAAGAACTAGAGACCGCAC 58.817 50.000 0.00 0.00 0.00 5.34
4472 8131 2.235891 TCAAGAACTAGAGACCGCACA 58.764 47.619 0.00 0.00 0.00 4.57
4475 8134 3.746045 AGAACTAGAGACCGCACAAAA 57.254 42.857 0.00 0.00 0.00 2.44
4476 8135 3.391049 AGAACTAGAGACCGCACAAAAC 58.609 45.455 0.00 0.00 0.00 2.43
4478 8137 0.438830 CTAGAGACCGCACAAAACGC 59.561 55.000 0.00 0.00 0.00 4.84
4479 8138 0.947180 TAGAGACCGCACAAAACGCC 60.947 55.000 0.00 0.00 0.00 5.68
4488 8147 1.890510 ACAAAACGCCCGTGACCTC 60.891 57.895 0.00 0.00 0.00 3.85
4489 8148 2.281276 AAAACGCCCGTGACCTCC 60.281 61.111 0.00 0.00 0.00 4.30
4490 8149 2.814835 AAAACGCCCGTGACCTCCT 61.815 57.895 0.00 0.00 0.00 3.69
4495 8154 4.400251 CCCGTGACCTCCTCCCCT 62.400 72.222 0.00 0.00 0.00 4.79
4496 8155 2.760385 CCGTGACCTCCTCCCCTC 60.760 72.222 0.00 0.00 0.00 4.30
4499 8158 2.037367 TGACCTCCTCCCCTCGTG 59.963 66.667 0.00 0.00 0.00 4.35
4551 8210 4.890306 GGGCCTCCCTCTCCTCCC 62.890 77.778 0.84 0.00 41.34 4.30
4552 8211 4.890306 GGCCTCCCTCTCCTCCCC 62.890 77.778 0.00 0.00 0.00 4.81
4581 8240 3.916544 CGAGGGCATCGCAGGCTA 61.917 66.667 9.16 0.00 45.98 3.93
4582 8241 2.505982 GAGGGCATCGCAGGCTAA 59.494 61.111 0.00 0.00 0.00 3.09
4583 8242 1.596477 GAGGGCATCGCAGGCTAAG 60.596 63.158 0.00 0.00 0.00 2.18
4584 8243 3.282920 GGGCATCGCAGGCTAAGC 61.283 66.667 0.00 0.00 0.00 3.09
4622 8281 4.821589 GGCGGCAGTCTTCCTCGG 62.822 72.222 3.07 0.00 0.00 4.63
4624 8283 4.821589 CGGCAGTCTTCCTCGGCC 62.822 72.222 0.00 0.00 41.40 6.13
4625 8284 3.706373 GGCAGTCTTCCTCGGCCA 61.706 66.667 2.24 0.00 43.56 5.36
4626 8285 2.125350 GCAGTCTTCCTCGGCCAG 60.125 66.667 2.24 0.00 0.00 4.85
4627 8286 2.125350 CAGTCTTCCTCGGCCAGC 60.125 66.667 2.24 0.00 0.00 4.85
4628 8287 3.764466 AGTCTTCCTCGGCCAGCG 61.764 66.667 2.24 0.00 0.00 5.18
4629 8288 3.760035 GTCTTCCTCGGCCAGCGA 61.760 66.667 2.24 0.00 0.00 4.93
4630 8289 2.759973 TCTTCCTCGGCCAGCGAT 60.760 61.111 2.24 0.00 0.00 4.58
4631 8290 2.279784 CTTCCTCGGCCAGCGATC 60.280 66.667 2.24 0.00 0.00 3.69
4632 8291 3.074369 TTCCTCGGCCAGCGATCA 61.074 61.111 2.24 0.00 0.00 2.92
4633 8292 2.967929 CTTCCTCGGCCAGCGATCAG 62.968 65.000 2.24 0.00 0.00 2.90
4634 8293 3.531207 CCTCGGCCAGCGATCAGA 61.531 66.667 2.24 0.00 0.00 3.27
4635 8294 2.733301 CTCGGCCAGCGATCAGAT 59.267 61.111 2.24 0.00 0.00 2.90
4636 8295 1.372748 CTCGGCCAGCGATCAGATC 60.373 63.158 2.24 0.00 0.00 2.75
4637 8296 1.804396 CTCGGCCAGCGATCAGATCT 61.804 60.000 2.24 0.00 0.00 2.75
4638 8297 1.664017 CGGCCAGCGATCAGATCTG 60.664 63.158 17.07 17.07 0.00 2.90
4640 8299 1.301558 GCCAGCGATCAGATCTGGG 60.302 63.158 22.42 14.88 45.63 4.45
4641 8300 2.037620 GCCAGCGATCAGATCTGGGT 62.038 60.000 22.42 11.70 45.63 4.51
4642 8301 0.249784 CCAGCGATCAGATCTGGGTG 60.250 60.000 22.42 19.62 42.70 4.61
4643 8302 0.249784 CAGCGATCAGATCTGGGTGG 60.250 60.000 22.42 13.39 0.00 4.61
4644 8303 1.596477 GCGATCAGATCTGGGTGGC 60.596 63.158 22.42 18.56 0.00 5.01
4645 8304 1.300465 CGATCAGATCTGGGTGGCG 60.300 63.158 22.42 14.18 0.00 5.69
4646 8305 1.070445 GATCAGATCTGGGTGGCGG 59.930 63.158 22.42 0.00 0.00 6.13
4647 8306 3.112205 ATCAGATCTGGGTGGCGGC 62.112 63.158 22.42 0.00 0.00 6.53
4665 8324 3.782443 GACCCACTCCGGCCGATT 61.782 66.667 30.73 7.07 0.00 3.34
4666 8325 3.735037 GACCCACTCCGGCCGATTC 62.735 68.421 30.73 7.74 0.00 2.52
4667 8326 3.781307 CCCACTCCGGCCGATTCA 61.781 66.667 30.73 6.27 0.00 2.57
4668 8327 2.267642 CCACTCCGGCCGATTCAA 59.732 61.111 30.73 5.29 0.00 2.69
4669 8328 1.815421 CCACTCCGGCCGATTCAAG 60.815 63.158 30.73 17.29 0.00 3.02
4670 8329 1.815421 CACTCCGGCCGATTCAAGG 60.815 63.158 30.73 8.04 0.00 3.61
4671 8330 2.203070 CTCCGGCCGATTCAAGGG 60.203 66.667 30.73 4.01 0.00 3.95
4676 8335 3.508840 GCCGATTCAAGGGCGGTG 61.509 66.667 0.00 0.00 46.38 4.94
4677 8336 2.824041 CCGATTCAAGGGCGGTGG 60.824 66.667 0.00 0.00 40.17 4.61
4678 8337 3.508840 CGATTCAAGGGCGGTGGC 61.509 66.667 0.00 0.00 38.90 5.01
4679 8338 3.508840 GATTCAAGGGCGGTGGCG 61.509 66.667 0.00 0.00 41.24 5.69
4709 8368 4.643387 GACCAGGGTTGCCGTGCT 62.643 66.667 2.63 0.00 37.99 4.40
4710 8369 4.954970 ACCAGGGTTGCCGTGCTG 62.955 66.667 2.63 0.00 37.99 4.41
4728 8387 4.415332 GCGGTGGCGACGAAGAGA 62.415 66.667 0.00 0.00 0.00 3.10
4729 8388 2.490217 CGGTGGCGACGAAGAGAT 59.510 61.111 0.00 0.00 0.00 2.75
4730 8389 1.586564 CGGTGGCGACGAAGAGATC 60.587 63.158 0.00 0.00 0.00 2.75
4731 8390 1.511305 GGTGGCGACGAAGAGATCA 59.489 57.895 0.00 0.00 0.00 2.92
4732 8391 0.802607 GGTGGCGACGAAGAGATCAC 60.803 60.000 0.00 0.00 0.00 3.06
4733 8392 0.109272 GTGGCGACGAAGAGATCACA 60.109 55.000 0.00 0.00 0.00 3.58
4734 8393 0.817654 TGGCGACGAAGAGATCACAT 59.182 50.000 0.00 0.00 0.00 3.21
4735 8394 1.202302 TGGCGACGAAGAGATCACATC 60.202 52.381 0.00 0.00 0.00 3.06
4736 8395 1.116436 GCGACGAAGAGATCACATCG 58.884 55.000 14.72 14.72 40.90 3.84
4737 8396 1.747956 CGACGAAGAGATCACATCGG 58.252 55.000 19.19 2.11 39.49 4.18
4738 8397 1.482278 GACGAAGAGATCACATCGGC 58.518 55.000 19.19 14.14 39.49 5.54
4739 8398 0.248661 ACGAAGAGATCACATCGGCG 60.249 55.000 19.19 0.00 39.49 6.46
4740 8399 0.936764 CGAAGAGATCACATCGGCGG 60.937 60.000 7.21 0.00 0.00 6.13
4741 8400 1.218230 GAAGAGATCACATCGGCGGC 61.218 60.000 7.21 0.00 0.00 6.53
4742 8401 1.680522 AAGAGATCACATCGGCGGCT 61.681 55.000 7.21 0.00 0.00 5.52
4743 8402 0.823769 AGAGATCACATCGGCGGCTA 60.824 55.000 7.21 0.00 0.00 3.93
4744 8403 0.387878 GAGATCACATCGGCGGCTAG 60.388 60.000 7.21 0.00 0.00 3.42
4745 8404 1.109920 AGATCACATCGGCGGCTAGT 61.110 55.000 7.21 0.00 0.00 2.57
4746 8405 0.941463 GATCACATCGGCGGCTAGTG 60.941 60.000 7.21 12.72 0.00 2.74
4747 8406 1.676678 ATCACATCGGCGGCTAGTGT 61.677 55.000 19.26 12.96 0.00 3.55
4748 8407 2.167219 CACATCGGCGGCTAGTGTG 61.167 63.158 18.48 18.48 34.88 3.82
4749 8408 2.184322 CATCGGCGGCTAGTGTGT 59.816 61.111 7.21 0.00 0.00 3.72
4750 8409 1.878522 CATCGGCGGCTAGTGTGTC 60.879 63.158 7.21 0.00 0.00 3.67
4751 8410 3.077519 ATCGGCGGCTAGTGTGTCC 62.078 63.158 7.21 0.00 0.00 4.02
4753 8412 3.755628 GGCGGCTAGTGTGTCCGA 61.756 66.667 9.59 0.00 45.53 4.55
4754 8413 2.494918 GCGGCTAGTGTGTCCGAT 59.505 61.111 9.59 0.00 45.53 4.18
4755 8414 1.589196 GCGGCTAGTGTGTCCGATC 60.589 63.158 9.59 0.00 45.53 3.69
4756 8415 2.005960 GCGGCTAGTGTGTCCGATCT 62.006 60.000 9.59 0.00 45.53 2.75
4757 8416 0.248661 CGGCTAGTGTGTCCGATCTG 60.249 60.000 0.00 0.00 45.53 2.90
4758 8417 0.103208 GGCTAGTGTGTCCGATCTGG 59.897 60.000 0.00 0.00 40.09 3.86
4768 8427 1.040646 TCCGATCTGGATCCCTTTCG 58.959 55.000 9.90 13.95 43.74 3.46
4769 8428 0.034059 CCGATCTGGATCCCTTTCGG 59.966 60.000 23.65 23.65 42.00 4.30
4770 8429 2.370774 CCGATCTGGATCCCTTTCGGA 61.371 57.143 28.90 9.54 46.84 4.55
4779 8438 1.131638 TCCCTTTCGGATCTGGATGG 58.868 55.000 7.66 7.66 34.86 3.51
4780 8439 0.109342 CCCTTTCGGATCTGGATGGG 59.891 60.000 17.49 17.49 0.00 4.00
4781 8440 0.109342 CCTTTCGGATCTGGATGGGG 59.891 60.000 6.84 0.00 0.00 4.96
4782 8441 0.536006 CTTTCGGATCTGGATGGGGC 60.536 60.000 0.62 0.00 0.00 5.80
4783 8442 0.988145 TTTCGGATCTGGATGGGGCT 60.988 55.000 0.62 0.00 0.00 5.19
4784 8443 1.410850 TTCGGATCTGGATGGGGCTC 61.411 60.000 0.62 0.00 0.00 4.70
4785 8444 2.746359 GGATCTGGATGGGGCTCG 59.254 66.667 0.00 0.00 0.00 5.03
4786 8445 1.838846 GGATCTGGATGGGGCTCGA 60.839 63.158 0.00 0.00 0.00 4.04
4787 8446 1.670590 GATCTGGATGGGGCTCGAG 59.329 63.158 8.45 8.45 0.00 4.04
4788 8447 2.447586 GATCTGGATGGGGCTCGAGC 62.448 65.000 29.38 29.38 41.14 5.03
4805 8464 3.118454 CCGTCGTGCGCATCCTTT 61.118 61.111 15.91 0.00 39.71 3.11
4806 8465 2.096406 CGTCGTGCGCATCCTTTG 59.904 61.111 15.91 0.00 0.00 2.77
4807 8466 2.667318 CGTCGTGCGCATCCTTTGT 61.667 57.895 15.91 0.00 0.00 2.83
4808 8467 1.574428 GTCGTGCGCATCCTTTGTT 59.426 52.632 15.91 0.00 0.00 2.83
4809 8468 0.452784 GTCGTGCGCATCCTTTGTTC 60.453 55.000 15.91 0.00 0.00 3.18
4810 8469 1.154225 CGTGCGCATCCTTTGTTCC 60.154 57.895 15.91 0.00 0.00 3.62
4811 8470 1.154225 GTGCGCATCCTTTGTTCCG 60.154 57.895 15.91 0.00 0.00 4.30
4812 8471 2.331893 TGCGCATCCTTTGTTCCGG 61.332 57.895 5.66 0.00 0.00 5.14
4813 8472 2.485122 CGCATCCTTTGTTCCGGC 59.515 61.111 0.00 0.00 0.00 6.13
4814 8473 2.485122 GCATCCTTTGTTCCGGCG 59.515 61.111 0.00 0.00 0.00 6.46
4815 8474 2.485122 CATCCTTTGTTCCGGCGC 59.515 61.111 0.00 0.00 0.00 6.53
4816 8475 3.124921 ATCCTTTGTTCCGGCGCG 61.125 61.111 0.00 0.00 0.00 6.86
4834 8493 4.400961 GCAAGCGGCCTCTGGACT 62.401 66.667 0.00 0.00 36.11 3.85
4835 8494 3.019003 GCAAGCGGCCTCTGGACTA 62.019 63.158 0.00 0.00 36.11 2.59
4836 8495 1.142748 CAAGCGGCCTCTGGACTAG 59.857 63.158 0.00 0.00 0.00 2.57
4837 8496 2.060980 AAGCGGCCTCTGGACTAGG 61.061 63.158 0.00 0.00 37.17 3.02
4842 8501 2.496817 CCTCTGGACTAGGCACGC 59.503 66.667 0.00 0.00 0.00 5.34
4843 8502 2.103143 CTCTGGACTAGGCACGCG 59.897 66.667 3.53 3.53 0.00 6.01
4844 8503 2.360726 TCTGGACTAGGCACGCGA 60.361 61.111 15.93 0.00 0.00 5.87
4845 8504 2.202623 CTGGACTAGGCACGCGAC 60.203 66.667 15.93 3.75 0.00 5.19
4846 8505 2.986979 TGGACTAGGCACGCGACA 60.987 61.111 15.93 0.00 0.00 4.35
4847 8506 2.506438 GGACTAGGCACGCGACAC 60.506 66.667 15.93 1.05 0.00 3.67
4885 8544 4.133373 CCCTGGGCATGGAGGTGG 62.133 72.222 0.00 0.00 0.00 4.61
4886 8545 3.341629 CCTGGGCATGGAGGTGGT 61.342 66.667 0.00 0.00 0.00 4.16
4887 8546 2.044650 CTGGGCATGGAGGTGGTG 60.045 66.667 0.00 0.00 0.00 4.17
4888 8547 3.650298 CTGGGCATGGAGGTGGTGG 62.650 68.421 0.00 0.00 0.00 4.61
4891 8550 4.365111 GCATGGAGGTGGTGGCCA 62.365 66.667 0.00 0.00 35.91 5.36
4892 8551 2.685366 CATGGAGGTGGTGGCCAT 59.315 61.111 9.72 0.00 42.91 4.40
4893 8552 1.454479 CATGGAGGTGGTGGCCATC 60.454 63.158 9.72 9.78 40.29 3.51
4895 8554 1.217057 ATGGAGGTGGTGGCCATCTT 61.217 55.000 18.94 2.38 46.20 2.40
4896 8555 1.077429 GGAGGTGGTGGCCATCTTC 60.077 63.158 18.94 11.96 46.20 2.87
4897 8556 1.566298 GGAGGTGGTGGCCATCTTCT 61.566 60.000 18.94 14.27 46.20 2.85
4898 8557 0.329596 GAGGTGGTGGCCATCTTCTT 59.670 55.000 18.94 6.83 46.20 2.52
4899 8558 0.329596 AGGTGGTGGCCATCTTCTTC 59.670 55.000 18.94 0.00 43.31 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 8.519526 TCACTGTTTGAGTTTGAAACTATTGTT 58.480 29.630 11.01 0.00 43.03 2.83
46 47 8.909708 TTCACTGTTTGAGTTTGAAACTATTG 57.090 30.769 11.01 0.13 43.03 1.90
48 49 9.520204 CATTTCACTGTTTGAGTTTGAAACTAT 57.480 29.630 11.01 0.00 43.03 2.12
50 51 7.329226 CACATTTCACTGTTTGAGTTTGAAACT 59.671 33.333 10.82 10.82 46.38 2.66
51 52 7.116233 ACACATTTCACTGTTTGAGTTTGAAAC 59.884 33.333 0.00 0.00 32.33 2.78
56 57 6.071952 AGTCACACATTTCACTGTTTGAGTTT 60.072 34.615 0.00 0.00 36.54 2.66
57 58 5.415701 AGTCACACATTTCACTGTTTGAGTT 59.584 36.000 0.00 0.00 36.54 3.01
59 60 5.490139 AGTCACACATTTCACTGTTTGAG 57.510 39.130 0.00 0.00 36.72 3.02
60 61 5.414144 TGAAGTCACACATTTCACTGTTTGA 59.586 36.000 0.00 0.00 34.39 2.69
61 62 5.639757 TGAAGTCACACATTTCACTGTTTG 58.360 37.500 0.00 0.00 0.00 2.93
63 64 5.734220 GCATGAAGTCACACATTTCACTGTT 60.734 40.000 0.00 0.00 34.04 3.16
66 67 4.139786 AGCATGAAGTCACACATTTCACT 58.860 39.130 0.00 0.00 34.04 3.41
67 68 4.023792 TGAGCATGAAGTCACACATTTCAC 60.024 41.667 0.00 0.00 34.04 3.18
68 69 4.136051 TGAGCATGAAGTCACACATTTCA 58.864 39.130 0.00 0.00 35.52 2.69
69 70 4.754372 TGAGCATGAAGTCACACATTTC 57.246 40.909 0.00 0.00 0.00 2.17
72 73 2.486982 GCTTGAGCATGAAGTCACACAT 59.513 45.455 0.00 0.00 41.59 3.21
74 75 2.149578 AGCTTGAGCATGAAGTCACAC 58.850 47.619 5.70 0.00 45.16 3.82
76 77 5.557891 ATTTAGCTTGAGCATGAAGTCAC 57.442 39.130 5.70 0.00 45.16 3.67
78 79 5.356470 AGGAATTTAGCTTGAGCATGAAGTC 59.644 40.000 5.70 5.57 45.16 3.01
79 80 5.125097 CAGGAATTTAGCTTGAGCATGAAGT 59.875 40.000 5.70 0.00 45.16 3.01
80 81 5.356190 TCAGGAATTTAGCTTGAGCATGAAG 59.644 40.000 5.70 0.00 45.16 3.02
81 82 5.255687 TCAGGAATTTAGCTTGAGCATGAA 58.744 37.500 5.70 0.00 45.16 2.57
82 83 4.847198 TCAGGAATTTAGCTTGAGCATGA 58.153 39.130 5.70 0.00 45.16 3.07
84 85 4.205587 CCTCAGGAATTTAGCTTGAGCAT 58.794 43.478 5.70 0.00 45.16 3.79
85 86 3.614092 CCTCAGGAATTTAGCTTGAGCA 58.386 45.455 5.70 0.00 45.16 4.26
86 87 2.948315 CCCTCAGGAATTTAGCTTGAGC 59.052 50.000 0.00 0.00 37.93 4.26
87 88 4.227864 ACCCTCAGGAATTTAGCTTGAG 57.772 45.455 0.00 0.00 38.69 3.02
88 89 4.657814 AACCCTCAGGAATTTAGCTTGA 57.342 40.909 0.00 0.00 36.73 3.02
89 90 7.229506 CCTATTAACCCTCAGGAATTTAGCTTG 59.770 40.741 0.00 0.00 36.73 4.01
90 91 7.128883 TCCTATTAACCCTCAGGAATTTAGCTT 59.871 37.037 0.00 0.00 34.25 3.74
92 93 6.838382 TCCTATTAACCCTCAGGAATTTAGC 58.162 40.000 0.00 0.00 34.25 3.09
93 94 9.289782 CAATCCTATTAACCCTCAGGAATTTAG 57.710 37.037 0.00 0.00 40.48 1.85
96 97 7.091993 TGTCAATCCTATTAACCCTCAGGAATT 60.092 37.037 0.00 0.00 40.48 2.17
97 98 6.389869 TGTCAATCCTATTAACCCTCAGGAAT 59.610 38.462 0.00 0.00 40.48 3.01
98 99 5.729229 TGTCAATCCTATTAACCCTCAGGAA 59.271 40.000 0.00 0.00 40.48 3.36
99 100 5.285401 TGTCAATCCTATTAACCCTCAGGA 58.715 41.667 0.00 0.00 41.31 3.86
100 101 5.630415 TGTCAATCCTATTAACCCTCAGG 57.370 43.478 0.00 0.00 40.04 3.86
101 102 7.072263 AGATGTCAATCCTATTAACCCTCAG 57.928 40.000 0.00 0.00 32.77 3.35
104 105 8.568617 AGTAAGATGTCAATCCTATTAACCCT 57.431 34.615 0.00 0.00 32.77 4.34
125 126 9.781834 CACTTGTTGTTTTCTTGACAATAGTAA 57.218 29.630 0.00 0.00 39.03 2.24
126 127 9.168451 TCACTTGTTGTTTTCTTGACAATAGTA 57.832 29.630 0.00 0.00 39.03 1.82
128 129 8.909708 TTCACTTGTTGTTTTCTTGACAATAG 57.090 30.769 0.00 0.00 39.03 1.73
129 130 8.735315 TCTTCACTTGTTGTTTTCTTGACAATA 58.265 29.630 0.00 0.00 39.03 1.90
130 131 7.542130 GTCTTCACTTGTTGTTTTCTTGACAAT 59.458 33.333 0.00 0.00 39.03 2.71
131 132 6.861055 GTCTTCACTTGTTGTTTTCTTGACAA 59.139 34.615 0.00 0.00 34.83 3.18
132 133 6.206634 AGTCTTCACTTGTTGTTTTCTTGACA 59.793 34.615 0.00 0.00 0.00 3.58
133 134 6.612306 AGTCTTCACTTGTTGTTTTCTTGAC 58.388 36.000 0.00 0.00 0.00 3.18
148 149 2.224305 CCCTCGTTTCCAAGTCTTCACT 60.224 50.000 0.00 0.00 0.00 3.41
149 150 2.143925 CCCTCGTTTCCAAGTCTTCAC 58.856 52.381 0.00 0.00 0.00 3.18
150 151 2.037251 CTCCCTCGTTTCCAAGTCTTCA 59.963 50.000 0.00 0.00 0.00 3.02
151 152 2.299297 TCTCCCTCGTTTCCAAGTCTTC 59.701 50.000 0.00 0.00 0.00 2.87
152 153 2.326428 TCTCCCTCGTTTCCAAGTCTT 58.674 47.619 0.00 0.00 0.00 3.01
154 155 2.833631 TTCTCCCTCGTTTCCAAGTC 57.166 50.000 0.00 0.00 0.00 3.01
155 156 4.094476 TCTATTCTCCCTCGTTTCCAAGT 58.906 43.478 0.00 0.00 0.00 3.16
156 157 4.737855 TCTATTCTCCCTCGTTTCCAAG 57.262 45.455 0.00 0.00 0.00 3.61
157 158 4.323257 GGTTCTATTCTCCCTCGTTTCCAA 60.323 45.833 0.00 0.00 0.00 3.53
158 159 3.197116 GGTTCTATTCTCCCTCGTTTCCA 59.803 47.826 0.00 0.00 0.00 3.53
159 160 3.431905 GGGTTCTATTCTCCCTCGTTTCC 60.432 52.174 0.00 0.00 38.29 3.13
160 161 3.737355 CGGGTTCTATTCTCCCTCGTTTC 60.737 52.174 0.00 0.00 39.10 2.78
161 162 2.167900 CGGGTTCTATTCTCCCTCGTTT 59.832 50.000 0.00 0.00 39.10 3.60
162 163 1.755380 CGGGTTCTATTCTCCCTCGTT 59.245 52.381 0.00 0.00 39.10 3.85
164 165 0.674534 CCGGGTTCTATTCTCCCTCG 59.325 60.000 0.00 0.00 39.10 4.63
165 166 2.083628 TCCGGGTTCTATTCTCCCTC 57.916 55.000 0.00 0.00 39.10 4.30
166 167 2.292984 ACTTCCGGGTTCTATTCTCCCT 60.293 50.000 0.00 0.00 39.10 4.20
167 168 2.117051 ACTTCCGGGTTCTATTCTCCC 58.883 52.381 0.00 0.00 37.98 4.30
168 169 3.908643 AACTTCCGGGTTCTATTCTCC 57.091 47.619 0.00 0.00 0.00 3.71
169 170 4.809958 GCTTAACTTCCGGGTTCTATTCTC 59.190 45.833 0.00 0.00 0.00 2.87
170 171 4.679905 CGCTTAACTTCCGGGTTCTATTCT 60.680 45.833 0.00 0.00 0.00 2.40
171 172 3.554731 CGCTTAACTTCCGGGTTCTATTC 59.445 47.826 0.00 0.00 0.00 1.75
172 173 3.055602 ACGCTTAACTTCCGGGTTCTATT 60.056 43.478 0.00 0.00 0.00 1.73
174 175 1.895131 ACGCTTAACTTCCGGGTTCTA 59.105 47.619 0.00 0.00 0.00 2.10
176 177 0.794473 CACGCTTAACTTCCGGGTTC 59.206 55.000 0.00 0.00 0.00 3.62
177 178 1.232621 GCACGCTTAACTTCCGGGTT 61.233 55.000 0.00 0.60 0.00 4.11
181 182 0.716108 CTGAGCACGCTTAACTTCCG 59.284 55.000 0.00 0.00 0.00 4.30
182 183 1.079503 CCTGAGCACGCTTAACTTCC 58.920 55.000 0.00 0.00 0.00 3.46
184 185 0.035458 AGCCTGAGCACGCTTAACTT 59.965 50.000 0.00 0.00 43.56 2.66
185 186 0.671781 CAGCCTGAGCACGCTTAACT 60.672 55.000 0.00 0.00 43.56 2.24
186 187 1.639298 CCAGCCTGAGCACGCTTAAC 61.639 60.000 0.00 0.00 43.56 2.01
187 188 1.375908 CCAGCCTGAGCACGCTTAA 60.376 57.895 0.00 0.00 43.56 1.85
188 189 2.230994 CTCCAGCCTGAGCACGCTTA 62.231 60.000 0.00 0.00 43.56 3.09
189 190 3.602513 CTCCAGCCTGAGCACGCTT 62.603 63.158 0.00 0.00 43.56 4.68
190 191 4.079850 CTCCAGCCTGAGCACGCT 62.080 66.667 0.00 0.00 43.56 5.07
191 192 2.897641 CTACTCCAGCCTGAGCACGC 62.898 65.000 0.00 0.00 43.56 5.34
192 193 1.140589 CTACTCCAGCCTGAGCACG 59.859 63.158 0.00 0.00 43.56 5.34
193 194 0.108424 CACTACTCCAGCCTGAGCAC 60.108 60.000 0.00 0.00 43.56 4.40
194 195 0.251787 TCACTACTCCAGCCTGAGCA 60.252 55.000 0.00 0.00 43.56 4.26
195 196 0.459489 CTCACTACTCCAGCCTGAGC 59.541 60.000 0.00 0.00 35.72 4.26
196 197 2.023673 CTCTCACTACTCCAGCCTGAG 58.976 57.143 0.00 0.00 38.37 3.35
198 199 1.110442 CCTCTCACTACTCCAGCCTG 58.890 60.000 0.00 0.00 0.00 4.85
199 200 1.003646 TCCTCTCACTACTCCAGCCT 58.996 55.000 0.00 0.00 0.00 4.58
200 201 1.686052 CATCCTCTCACTACTCCAGCC 59.314 57.143 0.00 0.00 0.00 4.85
201 202 1.686052 CCATCCTCTCACTACTCCAGC 59.314 57.143 0.00 0.00 0.00 4.85
202 203 2.315176 CCCATCCTCTCACTACTCCAG 58.685 57.143 0.00 0.00 0.00 3.86
203 204 1.646447 ACCCATCCTCTCACTACTCCA 59.354 52.381 0.00 0.00 0.00 3.86
204 205 2.035632 CACCCATCCTCTCACTACTCC 58.964 57.143 0.00 0.00 0.00 3.85
205 206 2.691011 GTCACCCATCCTCTCACTACTC 59.309 54.545 0.00 0.00 0.00 2.59
206 207 2.624557 GGTCACCCATCCTCTCACTACT 60.625 54.545 0.00 0.00 0.00 2.57
207 208 1.757699 GGTCACCCATCCTCTCACTAC 59.242 57.143 0.00 0.00 0.00 2.73
208 209 1.685180 CGGTCACCCATCCTCTCACTA 60.685 57.143 0.00 0.00 0.00 2.74
209 210 0.972983 CGGTCACCCATCCTCTCACT 60.973 60.000 0.00 0.00 0.00 3.41
210 211 1.258445 ACGGTCACCCATCCTCTCAC 61.258 60.000 0.00 0.00 0.00 3.51
211 212 0.970937 GACGGTCACCCATCCTCTCA 60.971 60.000 2.62 0.00 0.00 3.27
212 213 1.677637 GGACGGTCACCCATCCTCTC 61.678 65.000 10.76 0.00 0.00 3.20
213 214 1.686110 GGACGGTCACCCATCCTCT 60.686 63.158 10.76 0.00 0.00 3.69
214 215 2.901042 GGACGGTCACCCATCCTC 59.099 66.667 10.76 0.00 0.00 3.71
215 216 3.075005 CGGACGGTCACCCATCCT 61.075 66.667 10.76 0.00 0.00 3.24
216 217 4.157120 CCGGACGGTCACCCATCC 62.157 72.222 10.76 1.98 0.00 3.51
217 218 4.157120 CCCGGACGGTCACCCATC 62.157 72.222 0.73 0.00 0.00 3.51
218 219 4.707768 TCCCGGACGGTCACCCAT 62.708 66.667 0.73 0.00 0.00 4.00
219 220 4.938074 TTCCCGGACGGTCACCCA 62.938 66.667 0.73 0.00 0.00 4.51
220 221 4.078516 CTTCCCGGACGGTCACCC 62.079 72.222 0.73 0.00 0.00 4.61
221 222 1.535204 TAACTTCCCGGACGGTCACC 61.535 60.000 0.73 0.00 0.00 4.02
223 224 0.251297 TCTAACTTCCCGGACGGTCA 60.251 55.000 0.73 0.00 0.00 4.02
224 225 1.109609 ATCTAACTTCCCGGACGGTC 58.890 55.000 0.73 0.00 0.00 4.79
225 226 0.822164 CATCTAACTTCCCGGACGGT 59.178 55.000 0.73 0.00 0.00 4.83
226 227 1.108776 TCATCTAACTTCCCGGACGG 58.891 55.000 0.73 3.25 0.00 4.79
229 230 3.778075 TCCAAATCATCTAACTTCCCGGA 59.222 43.478 0.73 0.00 0.00 5.14
230 231 4.150897 TCCAAATCATCTAACTTCCCGG 57.849 45.455 0.00 0.00 0.00 5.73
231 232 5.822519 TCATTCCAAATCATCTAACTTCCCG 59.177 40.000 0.00 0.00 0.00 5.14
232 233 7.503566 TCATCATTCCAAATCATCTAACTTCCC 59.496 37.037 0.00 0.00 0.00 3.97
233 234 8.455903 TCATCATTCCAAATCATCTAACTTCC 57.544 34.615 0.00 0.00 0.00 3.46
236 237 7.002879 CCCTCATCATTCCAAATCATCTAACT 58.997 38.462 0.00 0.00 0.00 2.24
238 239 6.774170 CACCCTCATCATTCCAAATCATCTAA 59.226 38.462 0.00 0.00 0.00 2.10
239 240 6.101588 TCACCCTCATCATTCCAAATCATCTA 59.898 38.462 0.00 0.00 0.00 1.98
240 241 5.103813 TCACCCTCATCATTCCAAATCATCT 60.104 40.000 0.00 0.00 0.00 2.90
241 242 5.135383 TCACCCTCATCATTCCAAATCATC 58.865 41.667 0.00 0.00 0.00 2.92
243 244 4.589647 TCACCCTCATCATTCCAAATCA 57.410 40.909 0.00 0.00 0.00 2.57
244 245 7.000472 TCTAATCACCCTCATCATTCCAAATC 59.000 38.462 0.00 0.00 0.00 2.17
245 246 6.914665 TCTAATCACCCTCATCATTCCAAAT 58.085 36.000 0.00 0.00 0.00 2.32
246 247 6.158520 TCTCTAATCACCCTCATCATTCCAAA 59.841 38.462 0.00 0.00 0.00 3.28
247 248 5.667172 TCTCTAATCACCCTCATCATTCCAA 59.333 40.000 0.00 0.00 0.00 3.53
248 249 5.218959 TCTCTAATCACCCTCATCATTCCA 58.781 41.667 0.00 0.00 0.00 3.53
249 250 5.815233 TCTCTAATCACCCTCATCATTCC 57.185 43.478 0.00 0.00 0.00 3.01
250 251 8.811017 TCTAATCTCTAATCACCCTCATCATTC 58.189 37.037 0.00 0.00 0.00 2.67
251 252 8.733092 TCTAATCTCTAATCACCCTCATCATT 57.267 34.615 0.00 0.00 0.00 2.57
252 253 7.399765 CCTCTAATCTCTAATCACCCTCATCAT 59.600 40.741 0.00 0.00 0.00 2.45
253 254 6.723515 CCTCTAATCTCTAATCACCCTCATCA 59.276 42.308 0.00 0.00 0.00 3.07
255 256 6.629156 ACCTCTAATCTCTAATCACCCTCAT 58.371 40.000 0.00 0.00 0.00 2.90
256 257 6.031964 ACCTCTAATCTCTAATCACCCTCA 57.968 41.667 0.00 0.00 0.00 3.86
257 258 6.987403 AACCTCTAATCTCTAATCACCCTC 57.013 41.667 0.00 0.00 0.00 4.30
258 259 8.855804 TTTAACCTCTAATCTCTAATCACCCT 57.144 34.615 0.00 0.00 0.00 4.34
265 266 9.823647 CTGCTCAATTTAACCTCTAATCTCTAA 57.176 33.333 0.00 0.00 0.00 2.10
267 268 7.768120 CACTGCTCAATTTAACCTCTAATCTCT 59.232 37.037 0.00 0.00 0.00 3.10
268 269 7.766278 TCACTGCTCAATTTAACCTCTAATCTC 59.234 37.037 0.00 0.00 0.00 2.75
269 270 7.624549 TCACTGCTCAATTTAACCTCTAATCT 58.375 34.615 0.00 0.00 0.00 2.40
270 271 7.849804 TCACTGCTCAATTTAACCTCTAATC 57.150 36.000 0.00 0.00 0.00 1.75
271 272 8.049117 TCATCACTGCTCAATTTAACCTCTAAT 58.951 33.333 0.00 0.00 0.00 1.73
272 273 7.394016 TCATCACTGCTCAATTTAACCTCTAA 58.606 34.615 0.00 0.00 0.00 2.10
274 275 5.809001 TCATCACTGCTCAATTTAACCTCT 58.191 37.500 0.00 0.00 0.00 3.69
275 276 5.065731 CCTCATCACTGCTCAATTTAACCTC 59.934 44.000 0.00 0.00 0.00 3.85
276 277 4.946157 CCTCATCACTGCTCAATTTAACCT 59.054 41.667 0.00 0.00 0.00 3.50
277 278 4.096984 CCCTCATCACTGCTCAATTTAACC 59.903 45.833 0.00 0.00 0.00 2.85
278 279 4.096984 CCCCTCATCACTGCTCAATTTAAC 59.903 45.833 0.00 0.00 0.00 2.01
279 280 4.263905 ACCCCTCATCACTGCTCAATTTAA 60.264 41.667 0.00 0.00 0.00 1.52
280 281 3.266772 ACCCCTCATCACTGCTCAATTTA 59.733 43.478 0.00 0.00 0.00 1.40
282 283 1.637553 ACCCCTCATCACTGCTCAATT 59.362 47.619 0.00 0.00 0.00 2.32
283 284 1.064906 CACCCCTCATCACTGCTCAAT 60.065 52.381 0.00 0.00 0.00 2.57
284 285 0.325933 CACCCCTCATCACTGCTCAA 59.674 55.000 0.00 0.00 0.00 3.02
285 286 0.545071 TCACCCCTCATCACTGCTCA 60.545 55.000 0.00 0.00 0.00 4.26
286 287 0.835941 ATCACCCCTCATCACTGCTC 59.164 55.000 0.00 0.00 0.00 4.26
288 289 2.435805 TCTAATCACCCCTCATCACTGC 59.564 50.000 0.00 0.00 0.00 4.40
289 290 3.963374 TCTCTAATCACCCCTCATCACTG 59.037 47.826 0.00 0.00 0.00 3.66
291 292 5.559148 AATCTCTAATCACCCCTCATCAC 57.441 43.478 0.00 0.00 0.00 3.06
292 293 6.624297 TCTAATCTCTAATCACCCCTCATCA 58.376 40.000 0.00 0.00 0.00 3.07
293 294 6.154363 CCTCTAATCTCTAATCACCCCTCATC 59.846 46.154 0.00 0.00 0.00 2.92
296 297 5.399113 ACCTCTAATCTCTAATCACCCCTC 58.601 45.833 0.00 0.00 0.00 4.30
298 299 7.613551 TTAACCTCTAATCTCTAATCACCCC 57.386 40.000 0.00 0.00 0.00 4.95
376 377 9.470399 ACCGGTACTAAAGGAAATTTTATGATT 57.530 29.630 4.49 0.00 32.01 2.57
380 381 8.866970 TCAACCGGTACTAAAGGAAATTTTAT 57.133 30.769 8.00 0.00 32.01 1.40
381 382 8.732531 CATCAACCGGTACTAAAGGAAATTTTA 58.267 33.333 8.00 0.00 32.01 1.52
382 383 7.231925 ACATCAACCGGTACTAAAGGAAATTTT 59.768 33.333 8.00 0.00 32.01 1.82
383 384 6.717997 ACATCAACCGGTACTAAAGGAAATTT 59.282 34.615 8.00 0.00 34.72 1.82
385 386 5.812286 ACATCAACCGGTACTAAAGGAAAT 58.188 37.500 8.00 0.00 0.00 2.17
386 387 5.231702 ACATCAACCGGTACTAAAGGAAA 57.768 39.130 8.00 0.00 0.00 3.13
387 388 4.895668 ACATCAACCGGTACTAAAGGAA 57.104 40.909 8.00 0.00 0.00 3.36
388 389 4.895668 AACATCAACCGGTACTAAAGGA 57.104 40.909 8.00 0.00 0.00 3.36
389 390 4.872124 GGTAACATCAACCGGTACTAAAGG 59.128 45.833 8.00 0.00 0.00 3.11
390 391 5.481105 TGGTAACATCAACCGGTACTAAAG 58.519 41.667 8.00 0.00 46.17 1.85
391 392 5.480642 TGGTAACATCAACCGGTACTAAA 57.519 39.130 8.00 0.00 46.17 1.85
407 408 2.038952 ACCTTTAGTCCCGGTTGGTAAC 59.961 50.000 0.00 0.00 34.77 2.50
408 409 2.038820 CACCTTTAGTCCCGGTTGGTAA 59.961 50.000 0.00 0.00 34.77 2.85
411 412 0.322187 CCACCTTTAGTCCCGGTTGG 60.322 60.000 0.00 0.00 0.00 3.77
413 414 0.689055 GTCCACCTTTAGTCCCGGTT 59.311 55.000 0.00 0.00 0.00 4.44
414 415 1.196766 GGTCCACCTTTAGTCCCGGT 61.197 60.000 0.00 0.00 0.00 5.28
416 417 2.680066 AGGTCCACCTTTAGTCCCG 58.320 57.895 0.00 0.00 46.09 5.14
426 427 2.034221 GTTGCCTGGAGGTCCACC 59.966 66.667 0.00 0.00 42.01 4.61
428 429 3.636231 CCGTTGCCTGGAGGTCCA 61.636 66.667 0.00 0.00 45.30 4.02
439 440 3.443045 CCTCCATGTGGCCGTTGC 61.443 66.667 0.00 0.00 34.44 4.17
440 441 2.751436 CCCTCCATGTGGCCGTTG 60.751 66.667 0.00 0.00 34.44 4.10
441 442 4.740822 GCCCTCCATGTGGCCGTT 62.741 66.667 0.00 0.00 41.97 4.44
446 447 0.331278 TGTAAAGGCCCTCCATGTGG 59.669 55.000 0.00 0.00 33.74 4.17
449 450 2.514458 AAGTGTAAAGGCCCTCCATG 57.486 50.000 0.00 0.00 33.74 3.66
451 452 2.983898 ACTAAAGTGTAAAGGCCCTCCA 59.016 45.455 0.00 0.00 33.74 3.86
452 453 3.607741 GACTAAAGTGTAAAGGCCCTCC 58.392 50.000 0.00 0.00 0.00 4.30
453 454 3.607741 GGACTAAAGTGTAAAGGCCCTC 58.392 50.000 0.00 0.00 31.65 4.30
454 455 3.715638 GGACTAAAGTGTAAAGGCCCT 57.284 47.619 0.00 0.00 31.65 5.19
456 457 2.353323 CGGGACTAAAGTGTAAAGGCC 58.647 52.381 0.00 0.00 37.73 5.19
458 459 3.690475 ACCGGGACTAAAGTGTAAAGG 57.310 47.619 6.32 0.00 0.00 3.11
460 461 3.390639 TGGAACCGGGACTAAAGTGTAAA 59.609 43.478 6.32 0.00 0.00 2.01
461 462 2.971330 TGGAACCGGGACTAAAGTGTAA 59.029 45.455 6.32 0.00 0.00 2.41
462 463 2.564062 CTGGAACCGGGACTAAAGTGTA 59.436 50.000 6.32 0.00 0.00 2.90
463 464 1.346722 CTGGAACCGGGACTAAAGTGT 59.653 52.381 6.32 0.00 0.00 3.55
464 465 1.621814 TCTGGAACCGGGACTAAAGTG 59.378 52.381 6.32 0.00 0.00 3.16
466 467 2.696506 GTTCTGGAACCGGGACTAAAG 58.303 52.381 6.32 0.00 35.36 1.85
467 468 2.845363 GTTCTGGAACCGGGACTAAA 57.155 50.000 6.32 0.00 35.36 1.85
477 478 2.614734 CCTTTAGTCCCGGTTCTGGAAC 60.615 54.545 0.00 5.02 40.45 3.62
478 479 1.626825 CCTTTAGTCCCGGTTCTGGAA 59.373 52.381 0.00 0.00 32.59 3.53
479 480 1.272807 CCTTTAGTCCCGGTTCTGGA 58.727 55.000 0.00 0.00 0.00 3.86
480 481 0.392595 GCCTTTAGTCCCGGTTCTGG 60.393 60.000 0.00 0.00 0.00 3.86
481 482 0.392595 GGCCTTTAGTCCCGGTTCTG 60.393 60.000 0.00 0.00 0.00 3.02
482 483 1.559965 GGGCCTTTAGTCCCGGTTCT 61.560 60.000 0.84 0.15 32.00 3.01
483 484 1.077930 GGGCCTTTAGTCCCGGTTC 60.078 63.158 0.84 0.00 32.00 3.62
488 489 3.552875 GTTCATAAGGGCCTTTAGTCCC 58.447 50.000 26.29 4.98 42.94 4.46
489 490 3.552875 GGTTCATAAGGGCCTTTAGTCC 58.447 50.000 26.29 16.19 0.00 3.85
490 491 3.203716 CGGTTCATAAGGGCCTTTAGTC 58.796 50.000 26.29 11.28 0.00 2.59
491 492 2.092592 CCGGTTCATAAGGGCCTTTAGT 60.093 50.000 26.29 8.42 0.00 2.24
492 493 2.572290 CCGGTTCATAAGGGCCTTTAG 58.428 52.381 26.29 17.10 0.00 1.85
493 494 1.213430 CCCGGTTCATAAGGGCCTTTA 59.787 52.381 26.29 10.10 38.51 1.85
494 495 0.033503 CCCGGTTCATAAGGGCCTTT 60.034 55.000 26.29 5.08 38.51 3.11
495 496 0.917333 TCCCGGTTCATAAGGGCCTT 60.917 55.000 24.44 24.44 44.70 4.35
496 497 1.307517 TCCCGGTTCATAAGGGCCT 60.308 57.895 0.00 0.00 44.70 5.19
497 498 1.153025 GTCCCGGTTCATAAGGGCC 60.153 63.158 0.00 0.00 44.70 5.80
499 500 3.453353 TCTTTAGTCCCGGTTCATAAGGG 59.547 47.826 0.00 0.00 46.40 3.95
500 501 4.439968 GTCTTTAGTCCCGGTTCATAAGG 58.560 47.826 0.00 0.00 0.00 2.69
503 504 2.767960 GGGTCTTTAGTCCCGGTTCATA 59.232 50.000 0.00 0.00 33.91 2.15
505 506 0.978907 GGGTCTTTAGTCCCGGTTCA 59.021 55.000 0.00 0.00 33.91 3.18
506 507 1.273759 AGGGTCTTTAGTCCCGGTTC 58.726 55.000 0.00 0.00 46.13 3.62
509 510 2.873094 AAAAGGGTCTTTAGTCCCGG 57.127 50.000 0.00 0.00 46.13 5.73
513 514 8.366401 ACACTAGTAGAAAAAGGGTCTTTAGTC 58.634 37.037 3.59 0.00 29.18 2.59
514 515 8.260099 ACACTAGTAGAAAAAGGGTCTTTAGT 57.740 34.615 3.59 0.00 30.55 2.24
520 521 5.245526 TCCAGACACTAGTAGAAAAAGGGTC 59.754 44.000 3.59 0.00 42.76 4.46
521 522 5.011840 GTCCAGACACTAGTAGAAAAAGGGT 59.988 44.000 3.59 0.00 0.00 4.34
522 523 5.480205 GTCCAGACACTAGTAGAAAAAGGG 58.520 45.833 3.59 0.00 0.00 3.95
523 524 5.011738 TGGTCCAGACACTAGTAGAAAAAGG 59.988 44.000 3.59 0.65 0.00 3.11
525 526 6.464222 CATGGTCCAGACACTAGTAGAAAAA 58.536 40.000 3.59 0.00 0.00 1.94
526 527 5.046591 CCATGGTCCAGACACTAGTAGAAAA 60.047 44.000 2.57 0.00 0.00 2.29
527 528 4.466370 CCATGGTCCAGACACTAGTAGAAA 59.534 45.833 2.57 0.00 0.00 2.52
528 529 4.023980 CCATGGTCCAGACACTAGTAGAA 58.976 47.826 2.57 0.00 0.00 2.10
529 530 3.627492 CCCATGGTCCAGACACTAGTAGA 60.627 52.174 11.73 0.00 0.00 2.59
530 531 2.695666 CCCATGGTCCAGACACTAGTAG 59.304 54.545 11.73 0.00 0.00 2.57
531 532 2.043939 ACCCATGGTCCAGACACTAGTA 59.956 50.000 11.73 0.00 0.00 1.82
532 533 1.203313 ACCCATGGTCCAGACACTAGT 60.203 52.381 11.73 0.00 0.00 2.57
535 536 0.693049 GAACCCATGGTCCAGACACT 59.307 55.000 11.73 0.00 33.12 3.55
536 537 0.673644 CGAACCCATGGTCCAGACAC 60.674 60.000 11.73 0.00 33.12 3.67
537 538 1.676968 CGAACCCATGGTCCAGACA 59.323 57.895 11.73 0.00 33.12 3.41
538 539 1.078426 CCGAACCCATGGTCCAGAC 60.078 63.158 11.73 0.00 33.12 3.51
540 541 2.438434 GCCGAACCCATGGTCCAG 60.438 66.667 11.73 0.00 33.12 3.86
543 544 3.615509 TTCGGCCGAACCCATGGTC 62.616 63.158 35.81 1.14 33.12 4.02
544 545 3.642503 TTCGGCCGAACCCATGGT 61.643 61.111 35.81 0.00 37.65 3.55
545 546 3.131478 GTTCGGCCGAACCCATGG 61.131 66.667 46.28 10.94 46.21 3.66
552 553 2.046700 GACCATGGTTCGGCCGAA 60.047 61.111 35.81 35.81 41.21 4.30
553 554 4.090588 GGACCATGGTTCGGCCGA 62.091 66.667 27.28 27.28 41.21 5.54
554 555 4.096003 AGGACCATGGTTCGGCCG 62.096 66.667 22.12 22.12 41.21 6.13
555 556 2.438434 CAGGACCATGGTTCGGCC 60.438 66.667 20.85 15.59 37.90 6.13
556 557 0.608035 TTTCAGGACCATGGTTCGGC 60.608 55.000 20.85 5.72 0.00 5.54
557 558 1.904287 TTTTCAGGACCATGGTTCGG 58.096 50.000 20.85 18.60 0.00 4.30
558 559 2.095853 CGATTTTCAGGACCATGGTTCG 59.904 50.000 20.85 17.26 0.00 3.95
559 560 2.159379 GCGATTTTCAGGACCATGGTTC 60.159 50.000 20.85 18.49 0.00 3.62
561 562 1.463674 GCGATTTTCAGGACCATGGT 58.536 50.000 19.89 19.89 0.00 3.55
562 563 0.740737 GGCGATTTTCAGGACCATGG 59.259 55.000 11.19 11.19 0.00 3.66
563 564 1.462616 TGGCGATTTTCAGGACCATG 58.537 50.000 0.00 0.00 0.00 3.66
564 565 2.442236 ATGGCGATTTTCAGGACCAT 57.558 45.000 0.00 0.00 33.11 3.55
565 566 3.576078 ATATGGCGATTTTCAGGACCA 57.424 42.857 0.00 0.00 0.00 4.02
566 567 4.455877 CCTAATATGGCGATTTTCAGGACC 59.544 45.833 0.00 0.00 0.00 4.46
568 569 4.072131 GCCTAATATGGCGATTTTCAGGA 58.928 43.478 0.00 0.00 43.74 3.86
569 570 4.425577 GCCTAATATGGCGATTTTCAGG 57.574 45.455 0.00 0.00 43.74 3.86
580 581 9.550406 ACATGAAAATTGATTTGCCTAATATGG 57.450 29.630 0.00 0.00 0.00 2.74
691 2233 7.079475 GCATAAACCGTTATATTTTACGCCAT 58.921 34.615 0.00 0.00 36.49 4.40
695 2237 7.588123 TGCATGCATAAACCGTTATATTTTACG 59.412 33.333 18.46 0.00 37.50 3.18
725 2267 8.693120 TGTGGATGGTTATACTTAAACAACAA 57.307 30.769 0.00 0.00 38.47 2.83
885 2430 1.893801 AGTTAGGGAACAGACTGGTCG 59.106 52.381 14.29 0.00 34.15 4.79
1066 2611 4.017126 CAAAGTGATTCCTAGTTTCCCCC 58.983 47.826 0.00 0.00 0.00 5.40
1197 2742 8.710749 TTTTACTTCACTAACCAGTCCTACTA 57.289 34.615 0.00 0.00 30.46 1.82
1278 2823 5.705905 GTGTCCAAGAGTACAAATAAAGCCT 59.294 40.000 0.00 0.00 0.00 4.58
1349 2894 5.056480 TCACATGAGTAACAGACACAAAGG 58.944 41.667 0.00 0.00 32.01 3.11
1369 2914 9.530633 ACTCTATACCGAGTGAAATTTATTCAC 57.469 33.333 12.21 12.21 46.71 3.18
1886 3633 6.212789 TCCTGCCATAGTAGGACGACTACA 62.213 50.000 18.97 9.32 46.83 2.74
1951 3698 1.344438 CTACTGAGTGCACCAGACCAA 59.656 52.381 30.11 16.73 35.69 3.67
2098 3971 6.045955 GTCTGGGAGAAATAGAAGTGATGAC 58.954 44.000 0.00 0.00 0.00 3.06
2162 4035 7.830099 ACTTCTGATGAGAAAAGGTCAAAAT 57.170 32.000 0.00 0.00 37.77 1.82
2268 4141 3.543665 AGACACGTATCAGGGAGTCTAC 58.456 50.000 0.00 0.00 34.83 2.59
2342 4215 2.294512 CACATAGCAGAGCGACTATGGA 59.705 50.000 17.01 0.00 46.56 3.41
2486 4372 1.551883 GTGCCTGATTGAATGCCCTTT 59.448 47.619 0.00 0.00 0.00 3.11
2553 4439 5.083122 TGTCACCAACATAATCCCAAACAT 58.917 37.500 0.00 0.00 31.20 2.71
2580 4466 1.278985 AGTGATTGAGCCGATGGACAA 59.721 47.619 0.00 0.00 0.00 3.18
2650 4536 2.925724 CAGTTTACACAGTTGTCCCCA 58.074 47.619 0.00 0.00 37.15 4.96
2833 4719 3.437049 AGTTGGCTTGCTAAAAGACGATC 59.563 43.478 0.00 0.00 0.00 3.69
2986 5115 8.886719 CACACGCATATAATTGGATCAGAATAT 58.113 33.333 0.00 0.00 0.00 1.28
3056 5185 2.944129 TGGTGTTCCCTTTCCTTCTTG 58.056 47.619 0.00 0.00 0.00 3.02
3062 5191 5.016831 ACAGAAATATGGTGTTCCCTTTCC 58.983 41.667 0.00 0.00 31.70 3.13
3115 5244 1.069364 GCTCAAGTTGCAGCTCTTGAC 60.069 52.381 21.26 16.36 43.02 3.18
3132 5261 6.913170 TCTCCAACATTGTATTTTCAAGCTC 58.087 36.000 0.00 0.00 0.00 4.09
3226 5356 8.588472 CATAGGACATCAGTTACATCAATAGGA 58.412 37.037 0.00 0.00 0.00 2.94
3631 6026 6.093495 TGAAAAATATAGGCACCTGTTCTTCG 59.907 38.462 0.00 0.00 0.00 3.79
3785 7385 0.445436 CAGCATGTGAACTCTTCGCC 59.555 55.000 0.00 0.00 39.38 5.54
3845 7445 3.622166 TTACCCTTTCCGGAATCTGAC 57.378 47.619 19.62 0.00 33.16 3.51
3854 7454 2.071540 GACGACCTTTTACCCTTTCCG 58.928 52.381 0.00 0.00 0.00 4.30
3928 7529 7.325660 AGCATATACAACAAATGGTGAAGAG 57.674 36.000 5.28 0.00 35.97 2.85
3992 7624 2.851195 ACAATGAAAGAGCGACCTTGT 58.149 42.857 0.00 0.00 0.00 3.16
4050 7696 7.387397 CAGATTCTAGTTTTTCTTGCTGAGACT 59.613 37.037 0.00 0.00 33.02 3.24
4051 7697 7.386299 TCAGATTCTAGTTTTTCTTGCTGAGAC 59.614 37.037 0.00 0.00 33.02 3.36
4138 7784 9.982291 AGTTATGTAATGCAAAACAGTATTACG 57.018 29.630 9.92 0.00 44.72 3.18
4301 7957 9.849166 TCCATAAAAAGGAATTTAGCTAAAACG 57.151 29.630 22.13 5.43 30.71 3.60
4449 8108 2.826128 TGCGGTCTCTAGTTCTTGATGT 59.174 45.455 0.00 0.00 0.00 3.06
4460 8119 0.947180 GGCGTTTTGTGCGGTCTCTA 60.947 55.000 0.00 0.00 0.00 2.43
4466 8125 4.973360 CACGGGCGTTTTGTGCGG 62.973 66.667 0.00 0.00 0.00 5.69
4467 8126 3.943034 TCACGGGCGTTTTGTGCG 61.943 61.111 0.00 0.00 33.69 5.34
4469 8128 2.113131 GAGGTCACGGGCGTTTTGTG 62.113 60.000 0.00 0.00 34.96 3.33
4471 8130 2.613506 GGAGGTCACGGGCGTTTTG 61.614 63.158 0.00 0.00 0.00 2.44
4472 8131 2.281276 GGAGGTCACGGGCGTTTT 60.281 61.111 0.00 0.00 0.00 2.43
4478 8137 4.400251 AGGGGAGGAGGTCACGGG 62.400 72.222 0.00 0.00 0.00 5.28
4479 8138 2.760385 GAGGGGAGGAGGTCACGG 60.760 72.222 0.00 0.00 0.00 4.94
4482 8141 2.037367 CACGAGGGGAGGAGGTCA 59.963 66.667 0.00 0.00 0.00 4.02
4534 8193 4.890306 GGGAGGAGAGGGAGGCCC 62.890 77.778 0.00 0.00 45.90 5.80
4535 8194 4.890306 GGGGAGGAGAGGGAGGCC 62.890 77.778 0.00 0.00 0.00 5.19
4565 8224 1.596477 CTTAGCCTGCGATGCCCTC 60.596 63.158 0.00 0.00 0.00 4.30
4566 8225 2.507944 CTTAGCCTGCGATGCCCT 59.492 61.111 0.00 0.00 0.00 5.19
4567 8226 3.282920 GCTTAGCCTGCGATGCCC 61.283 66.667 0.00 0.00 0.00 5.36
4568 8227 3.282920 GGCTTAGCCTGCGATGCC 61.283 66.667 17.16 12.09 46.69 4.40
4605 8264 4.821589 CCGAGGAAGACTGCCGCC 62.822 72.222 0.00 0.00 0.00 6.13
4607 8266 4.821589 GGCCGAGGAAGACTGCCG 62.822 72.222 0.00 0.00 31.55 5.69
4608 8267 3.672295 CTGGCCGAGGAAGACTGCC 62.672 68.421 0.00 0.00 42.49 4.85
4609 8268 2.125350 CTGGCCGAGGAAGACTGC 60.125 66.667 0.00 0.00 0.00 4.40
4610 8269 2.125350 GCTGGCCGAGGAAGACTG 60.125 66.667 0.00 0.00 0.00 3.51
4611 8270 3.764466 CGCTGGCCGAGGAAGACT 61.764 66.667 0.00 0.00 40.02 3.24
4612 8271 3.760035 TCGCTGGCCGAGGAAGAC 61.760 66.667 0.00 0.00 41.89 3.01
4620 8279 1.664017 CAGATCTGATCGCTGGCCG 60.664 63.158 18.34 0.00 38.61 6.13
4621 8280 1.301558 CCAGATCTGATCGCTGGCC 60.302 63.158 24.62 0.00 42.30 5.36
4622 8281 1.301558 CCCAGATCTGATCGCTGGC 60.302 63.158 24.62 0.00 46.11 4.85
4623 8282 0.249784 CACCCAGATCTGATCGCTGG 60.250 60.000 24.62 16.84 46.83 4.85
4624 8283 0.249784 CCACCCAGATCTGATCGCTG 60.250 60.000 24.62 10.42 0.00 5.18
4625 8284 2.037620 GCCACCCAGATCTGATCGCT 62.038 60.000 24.62 0.00 0.00 4.93
4626 8285 1.596477 GCCACCCAGATCTGATCGC 60.596 63.158 24.62 14.90 0.00 4.58
4627 8286 1.300465 CGCCACCCAGATCTGATCG 60.300 63.158 24.62 14.26 0.00 3.69
4628 8287 1.070445 CCGCCACCCAGATCTGATC 59.930 63.158 24.62 9.65 0.00 2.92
4629 8288 3.112205 GCCGCCACCCAGATCTGAT 62.112 63.158 24.62 8.94 0.00 2.90
4630 8289 3.785859 GCCGCCACCCAGATCTGA 61.786 66.667 24.62 0.00 0.00 3.27
4648 8307 3.735037 GAATCGGCCGGAGTGGGTC 62.735 68.421 27.83 8.46 38.63 4.46
4649 8308 3.782443 GAATCGGCCGGAGTGGGT 61.782 66.667 27.83 2.30 38.63 4.51
4650 8309 3.323758 TTGAATCGGCCGGAGTGGG 62.324 63.158 27.83 0.00 38.63 4.61
4651 8310 1.815421 CTTGAATCGGCCGGAGTGG 60.815 63.158 27.83 7.91 42.50 4.00
4652 8311 1.815421 CCTTGAATCGGCCGGAGTG 60.815 63.158 27.83 10.81 0.00 3.51
4653 8312 2.584608 CCTTGAATCGGCCGGAGT 59.415 61.111 27.83 11.58 0.00 3.85
4654 8313 2.203070 CCCTTGAATCGGCCGGAG 60.203 66.667 27.83 14.86 0.00 4.63
4655 8314 4.483243 GCCCTTGAATCGGCCGGA 62.483 66.667 27.83 12.89 39.39 5.14
4658 8317 4.796495 ACCGCCCTTGAATCGGCC 62.796 66.667 0.00 0.00 46.49 6.13
4659 8318 3.508840 CACCGCCCTTGAATCGGC 61.509 66.667 0.00 0.00 46.49 5.54
4661 8320 3.508840 GCCACCGCCCTTGAATCG 61.509 66.667 0.00 0.00 0.00 3.34
4662 8321 3.508840 CGCCACCGCCCTTGAATC 61.509 66.667 0.00 0.00 0.00 2.52
4692 8351 4.643387 AGCACGGCAACCCTGGTC 62.643 66.667 0.00 0.00 0.00 4.02
4693 8352 4.954970 CAGCACGGCAACCCTGGT 62.955 66.667 0.00 0.00 0.00 4.00
4711 8370 3.701604 ATCTCTTCGTCGCCACCGC 62.702 63.158 0.00 0.00 0.00 5.68
4712 8371 1.586564 GATCTCTTCGTCGCCACCG 60.587 63.158 0.00 0.00 0.00 4.94
4713 8372 0.802607 GTGATCTCTTCGTCGCCACC 60.803 60.000 0.00 0.00 0.00 4.61
4714 8373 0.109272 TGTGATCTCTTCGTCGCCAC 60.109 55.000 0.00 0.00 0.00 5.01
4715 8374 0.817654 ATGTGATCTCTTCGTCGCCA 59.182 50.000 0.00 0.00 0.00 5.69
4716 8375 1.482278 GATGTGATCTCTTCGTCGCC 58.518 55.000 0.00 0.00 0.00 5.54
4717 8376 1.116436 CGATGTGATCTCTTCGTCGC 58.884 55.000 19.29 0.00 34.69 5.19
4718 8377 1.747956 CCGATGTGATCTCTTCGTCG 58.252 55.000 23.20 17.45 39.37 5.12
4719 8378 1.482278 GCCGATGTGATCTCTTCGTC 58.518 55.000 23.20 13.01 34.64 4.20
4720 8379 0.248661 CGCCGATGTGATCTCTTCGT 60.249 55.000 23.20 3.27 34.64 3.85
4721 8380 0.936764 CCGCCGATGTGATCTCTTCG 60.937 60.000 20.15 20.15 35.67 3.79
4722 8381 1.218230 GCCGCCGATGTGATCTCTTC 61.218 60.000 0.00 0.00 0.00 2.87
4723 8382 1.227380 GCCGCCGATGTGATCTCTT 60.227 57.895 0.00 0.00 0.00 2.85
4724 8383 0.823769 TAGCCGCCGATGTGATCTCT 60.824 55.000 0.00 0.00 0.00 3.10
4725 8384 0.387878 CTAGCCGCCGATGTGATCTC 60.388 60.000 0.00 0.00 0.00 2.75
4726 8385 1.109920 ACTAGCCGCCGATGTGATCT 61.110 55.000 0.00 0.00 0.00 2.75
4727 8386 0.941463 CACTAGCCGCCGATGTGATC 60.941 60.000 0.00 0.00 0.00 2.92
4728 8387 1.068083 CACTAGCCGCCGATGTGAT 59.932 57.895 0.00 0.00 0.00 3.06
4729 8388 2.348104 ACACTAGCCGCCGATGTGA 61.348 57.895 8.85 0.00 33.41 3.58
4730 8389 2.167219 CACACTAGCCGCCGATGTG 61.167 63.158 4.60 4.60 35.17 3.21
4731 8390 2.184322 CACACTAGCCGCCGATGT 59.816 61.111 0.00 0.00 0.00 3.06
4732 8391 1.878522 GACACACTAGCCGCCGATG 60.879 63.158 0.00 0.00 0.00 3.84
4733 8392 2.494918 GACACACTAGCCGCCGAT 59.505 61.111 0.00 0.00 0.00 4.18
4734 8393 3.755628 GGACACACTAGCCGCCGA 61.756 66.667 0.00 0.00 0.00 5.54
4736 8395 2.955751 GATCGGACACACTAGCCGCC 62.956 65.000 0.00 0.00 44.45 6.13
4737 8396 1.589196 GATCGGACACACTAGCCGC 60.589 63.158 0.00 0.00 44.45 6.53
4738 8397 0.248661 CAGATCGGACACACTAGCCG 60.249 60.000 0.00 0.00 46.08 5.52
4739 8398 0.103208 CCAGATCGGACACACTAGCC 59.897 60.000 0.00 0.00 36.56 3.93
4740 8399 1.103803 TCCAGATCGGACACACTAGC 58.896 55.000 0.00 0.00 39.64 3.42
4750 8409 3.595691 CGAAAGGGATCCAGATCGG 57.404 57.895 15.23 1.52 38.69 4.18
4763 8422 0.536006 GCCCCATCCAGATCCGAAAG 60.536 60.000 0.00 0.00 0.00 2.62
4764 8423 0.988145 AGCCCCATCCAGATCCGAAA 60.988 55.000 0.00 0.00 0.00 3.46
4765 8424 1.384502 AGCCCCATCCAGATCCGAA 60.385 57.895 0.00 0.00 0.00 4.30
4766 8425 1.838846 GAGCCCCATCCAGATCCGA 60.839 63.158 0.00 0.00 0.00 4.55
4767 8426 2.746359 GAGCCCCATCCAGATCCG 59.254 66.667 0.00 0.00 0.00 4.18
4768 8427 1.825281 CTCGAGCCCCATCCAGATCC 61.825 65.000 0.00 0.00 0.00 3.36
4769 8428 1.670590 CTCGAGCCCCATCCAGATC 59.329 63.158 0.00 0.00 0.00 2.75
4770 8429 2.515071 GCTCGAGCCCCATCCAGAT 61.515 63.158 27.22 0.00 34.31 2.90
4771 8430 3.157252 GCTCGAGCCCCATCCAGA 61.157 66.667 27.22 0.00 34.31 3.86
4788 8447 3.118454 AAAGGATGCGCACGACGG 61.118 61.111 14.90 0.00 43.93 4.79
4790 8449 0.452784 GAACAAAGGATGCGCACGAC 60.453 55.000 14.90 5.87 0.00 4.34
4791 8450 1.573829 GGAACAAAGGATGCGCACGA 61.574 55.000 14.90 0.00 0.00 4.35
4792 8451 1.154225 GGAACAAAGGATGCGCACG 60.154 57.895 14.90 0.00 0.00 5.34
4793 8452 1.154225 CGGAACAAAGGATGCGCAC 60.154 57.895 14.90 6.86 0.00 5.34
4794 8453 2.331893 CCGGAACAAAGGATGCGCA 61.332 57.895 14.96 14.96 29.41 6.09
4795 8454 2.485122 CCGGAACAAAGGATGCGC 59.515 61.111 0.00 0.00 29.41 6.09
4796 8455 2.485122 GCCGGAACAAAGGATGCG 59.515 61.111 5.05 0.00 0.00 4.73
4797 8456 2.485122 CGCCGGAACAAAGGATGC 59.515 61.111 5.05 0.00 0.00 3.91
4798 8457 2.485122 GCGCCGGAACAAAGGATG 59.515 61.111 5.05 0.00 0.00 3.51
4799 8458 3.124921 CGCGCCGGAACAAAGGAT 61.125 61.111 5.05 0.00 0.00 3.24
4817 8476 2.914777 CTAGTCCAGAGGCCGCTTGC 62.915 65.000 6.13 0.00 40.16 4.01
4818 8477 1.142748 CTAGTCCAGAGGCCGCTTG 59.857 63.158 6.13 3.07 0.00 4.01
4819 8478 2.060980 CCTAGTCCAGAGGCCGCTT 61.061 63.158 6.13 0.00 0.00 4.68
4820 8479 2.443016 CCTAGTCCAGAGGCCGCT 60.443 66.667 1.77 1.77 0.00 5.52
4825 8484 2.496817 GCGTGCCTAGTCCAGAGG 59.503 66.667 0.00 0.00 37.12 3.69
4826 8485 2.103143 CGCGTGCCTAGTCCAGAG 59.897 66.667 0.00 0.00 0.00 3.35
4827 8486 2.360726 TCGCGTGCCTAGTCCAGA 60.361 61.111 5.77 0.00 0.00 3.86
4828 8487 2.202623 GTCGCGTGCCTAGTCCAG 60.203 66.667 5.77 0.00 0.00 3.86
4829 8488 2.986979 TGTCGCGTGCCTAGTCCA 60.987 61.111 5.77 0.00 0.00 4.02
4830 8489 2.506438 GTGTCGCGTGCCTAGTCC 60.506 66.667 5.77 0.00 0.00 3.85
4831 8490 2.874780 CGTGTCGCGTGCCTAGTC 60.875 66.667 5.77 0.00 35.54 2.59
4832 8491 3.324099 CTCGTGTCGCGTGCCTAGT 62.324 63.158 5.77 0.00 42.13 2.57
4833 8492 2.577112 CTCGTGTCGCGTGCCTAG 60.577 66.667 5.77 0.00 42.13 3.02
4834 8493 4.111016 CCTCGTGTCGCGTGCCTA 62.111 66.667 5.77 0.00 42.13 3.93
4868 8527 4.133373 CCACCTCCATGCCCAGGG 62.133 72.222 0.00 0.00 33.57 4.45
4869 8528 3.341629 ACCACCTCCATGCCCAGG 61.342 66.667 2.76 2.76 35.69 4.45
4870 8529 2.044650 CACCACCTCCATGCCCAG 60.045 66.667 0.00 0.00 0.00 4.45
4871 8530 3.660571 CCACCACCTCCATGCCCA 61.661 66.667 0.00 0.00 0.00 5.36
4874 8533 3.667217 ATGGCCACCACCTCCATGC 62.667 63.158 8.16 0.00 39.01 4.06
4875 8534 1.454479 GATGGCCACCACCTCCATG 60.454 63.158 8.16 0.00 40.43 3.66
4876 8535 1.217057 AAGATGGCCACCACCTCCAT 61.217 55.000 8.16 0.00 42.83 3.41
4877 8536 1.852157 AAGATGGCCACCACCTCCA 60.852 57.895 8.16 0.00 35.80 3.86
4878 8537 1.077429 GAAGATGGCCACCACCTCC 60.077 63.158 8.16 0.00 35.80 4.30
4879 8538 0.329596 AAGAAGATGGCCACCACCTC 59.670 55.000 8.16 0.00 35.80 3.85
4880 8539 0.329596 GAAGAAGATGGCCACCACCT 59.670 55.000 8.16 0.00 35.80 4.00
4881 8540 2.873797 GAAGAAGATGGCCACCACC 58.126 57.895 8.16 0.00 35.80 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.