Multiple sequence alignment - TraesCS2D01G515100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G515100 chr2D 100.000 6892 0 0 1 6892 606647736 606640845 0.000000e+00 12728
1 TraesCS2D01G515100 chr2D 97.783 5458 92 12 1456 6892 499318408 499312959 0.000000e+00 9382
2 TraesCS2D01G515100 chr2D 98.026 3900 63 3 1447 5334 63940217 63944114 0.000000e+00 6763
3 TraesCS2D01G515100 chr2D 94.476 1412 20 15 5498 6892 63944110 63945480 0.000000e+00 2122
4 TraesCS2D01G515100 chr2D 93.891 311 17 2 1135 1443 340695820 340695510 1.050000e-127 468
5 TraesCS2D01G515100 chr2D 97.368 266 7 0 1454 1719 606638480 606638745 2.930000e-123 453
6 TraesCS2D01G515100 chr2D 93.841 276 5 1 1456 1719 63947812 63947537 8.320000e-109 405
7 TraesCS2D01G515100 chr6D 98.092 5450 88 6 1456 6892 57840387 57834941 0.000000e+00 9474
8 TraesCS2D01G515100 chr6D 98.512 4234 50 2 1452 5672 4312489 4316722 0.000000e+00 7457
9 TraesCS2D01G515100 chr6D 97.642 2417 44 5 4486 6892 464134075 464131662 0.000000e+00 4135
10 TraesCS2D01G515100 chr1D 96.213 5519 117 32 1455 6892 241469089 241474596 0.000000e+00 8949
11 TraesCS2D01G515100 chr1D 98.919 4257 45 1 1456 5712 415413057 415408802 0.000000e+00 7605
12 TraesCS2D01G515100 chr1D 98.147 1241 16 2 5658 6892 415408787 415407548 0.000000e+00 2158
13 TraesCS2D01G515100 chr1D 97.133 907 22 4 5987 6892 479816052 479816955 0.000000e+00 1528
14 TraesCS2D01G515100 chr1D 97.315 894 23 1 5999 6892 442321667 442320775 0.000000e+00 1517
15 TraesCS2D01G515100 chr1D 98.106 264 5 0 1456 1719 415405200 415405463 1.750000e-125 460
16 TraesCS2D01G515100 chr7D 97.817 4580 76 9 1455 6015 530370099 530365525 0.000000e+00 7882
17 TraesCS2D01G515100 chr7D 97.923 4333 66 6 1456 5773 514672446 514668123 0.000000e+00 7481
18 TraesCS2D01G515100 chr7D 97.347 4260 61 10 1533 5755 506643007 506647251 0.000000e+00 7193
19 TraesCS2D01G515100 chr7D 97.384 4052 65 16 1456 5488 151281188 151285217 0.000000e+00 6857
20 TraesCS2D01G515100 chr5D 98.189 4362 49 5 2555 6892 351810241 351814596 0.000000e+00 7590
21 TraesCS2D01G515100 chr5D 97.531 4333 76 8 1456 5773 502188893 502193209 0.000000e+00 7380
22 TraesCS2D01G515100 chr5D 93.323 1258 20 18 5658 6892 288072394 288073610 0.000000e+00 1799
23 TraesCS2D01G515100 chr5D 97.810 274 4 2 1456 1727 351816967 351816694 8.090000e-129 472
24 TraesCS2D01G515100 chr3D 97.634 4353 61 6 1456 5773 276642914 276647259 0.000000e+00 7430
25 TraesCS2D01G515100 chr3D 89.552 268 24 4 1455 1719 600641946 600642212 3.080000e-88 337
26 TraesCS2D01G515100 chr4D 96.362 907 28 4 5987 6892 374746245 374747147 0.000000e+00 1487
27 TraesCS2D01G515100 chr2B 86.184 912 65 23 8 901 738178366 738177498 0.000000e+00 929
28 TraesCS2D01G515100 chr2A 88.196 754 58 10 346 1087 738204649 738203915 0.000000e+00 870
29 TraesCS2D01G515100 chr2A 89.960 249 15 5 92 335 738205004 738204761 5.190000e-81 313
30 TraesCS2D01G515100 chr2A 98.039 102 1 1 2 102 738205421 738205320 7.100000e-40 176
31 TraesCS2D01G515100 chr6B 86.415 530 40 11 1455 1973 114237706 114237198 1.010000e-152 551
32 TraesCS2D01G515100 chr3A 93.548 310 18 2 1130 1438 579138474 579138782 1.750000e-125 460
33 TraesCS2D01G515100 chr3A 92.089 316 23 2 1129 1443 113559035 113559349 1.760000e-120 444
34 TraesCS2D01G515100 chr7A 92.357 314 22 2 1129 1441 125362660 125362972 4.900000e-121 446
35 TraesCS2D01G515100 chr7A 92.089 316 23 2 1129 1443 435285059 435285373 1.760000e-120 444
36 TraesCS2D01G515100 chr7A 89.850 266 26 1 1455 1719 126757606 126757871 2.380000e-89 340
37 TraesCS2D01G515100 chr4A 92.357 314 22 2 1129 1441 518619466 518619778 4.900000e-121 446
38 TraesCS2D01G515100 chr5A 92.089 316 23 2 1129 1443 195319184 195318870 1.760000e-120 444
39 TraesCS2D01G515100 chr6A 92.038 314 23 2 1129 1441 126295087 126295399 2.280000e-119 440
40 TraesCS2D01G515100 chr1A 92.038 314 23 2 1129 1441 67985786 67985474 2.280000e-119 440
41 TraesCS2D01G515100 chr1A 88.462 286 27 6 1456 1738 556662915 556663197 2.380000e-89 340
42 TraesCS2D01G515100 chr7B 89.963 269 22 2 1456 1719 600461270 600461538 6.620000e-90 342


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G515100 chr2D 606640845 606647736 6891 True 12728.0 12728 100.000 1 6892 1 chr2D.!!$R4 6891
1 TraesCS2D01G515100 chr2D 499312959 499318408 5449 True 9382.0 9382 97.783 1456 6892 1 chr2D.!!$R3 5436
2 TraesCS2D01G515100 chr2D 63940217 63945480 5263 False 4442.5 6763 96.251 1447 6892 2 chr2D.!!$F2 5445
3 TraesCS2D01G515100 chr6D 57834941 57840387 5446 True 9474.0 9474 98.092 1456 6892 1 chr6D.!!$R1 5436
4 TraesCS2D01G515100 chr6D 4312489 4316722 4233 False 7457.0 7457 98.512 1452 5672 1 chr6D.!!$F1 4220
5 TraesCS2D01G515100 chr6D 464131662 464134075 2413 True 4135.0 4135 97.642 4486 6892 1 chr6D.!!$R2 2406
6 TraesCS2D01G515100 chr1D 241469089 241474596 5507 False 8949.0 8949 96.213 1455 6892 1 chr1D.!!$F1 5437
7 TraesCS2D01G515100 chr1D 415407548 415413057 5509 True 4881.5 7605 98.533 1456 6892 2 chr1D.!!$R2 5436
8 TraesCS2D01G515100 chr1D 479816052 479816955 903 False 1528.0 1528 97.133 5987 6892 1 chr1D.!!$F3 905
9 TraesCS2D01G515100 chr1D 442320775 442321667 892 True 1517.0 1517 97.315 5999 6892 1 chr1D.!!$R1 893
10 TraesCS2D01G515100 chr7D 530365525 530370099 4574 True 7882.0 7882 97.817 1455 6015 1 chr7D.!!$R2 4560
11 TraesCS2D01G515100 chr7D 514668123 514672446 4323 True 7481.0 7481 97.923 1456 5773 1 chr7D.!!$R1 4317
12 TraesCS2D01G515100 chr7D 506643007 506647251 4244 False 7193.0 7193 97.347 1533 5755 1 chr7D.!!$F2 4222
13 TraesCS2D01G515100 chr7D 151281188 151285217 4029 False 6857.0 6857 97.384 1456 5488 1 chr7D.!!$F1 4032
14 TraesCS2D01G515100 chr5D 351810241 351814596 4355 False 7590.0 7590 98.189 2555 6892 1 chr5D.!!$F2 4337
15 TraesCS2D01G515100 chr5D 502188893 502193209 4316 False 7380.0 7380 97.531 1456 5773 1 chr5D.!!$F3 4317
16 TraesCS2D01G515100 chr5D 288072394 288073610 1216 False 1799.0 1799 93.323 5658 6892 1 chr5D.!!$F1 1234
17 TraesCS2D01G515100 chr3D 276642914 276647259 4345 False 7430.0 7430 97.634 1456 5773 1 chr3D.!!$F1 4317
18 TraesCS2D01G515100 chr4D 374746245 374747147 902 False 1487.0 1487 96.362 5987 6892 1 chr4D.!!$F1 905
19 TraesCS2D01G515100 chr2B 738177498 738178366 868 True 929.0 929 86.184 8 901 1 chr2B.!!$R1 893
20 TraesCS2D01G515100 chr2A 738203915 738205421 1506 True 453.0 870 92.065 2 1087 3 chr2A.!!$R1 1085
21 TraesCS2D01G515100 chr6B 114237198 114237706 508 True 551.0 551 86.415 1455 1973 1 chr6B.!!$R1 518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
768 1216 0.179001 TCATGCATGCAGAGATGGGG 60.179 55.000 26.69 7.64 0.00 4.96 F
1217 1670 0.108186 TCCTGCGATGCTCGTTTGAT 60.108 50.000 7.27 0.00 42.81 2.57 F
1436 1889 0.108662 CCTGCGAATCAAAAAGGCCC 60.109 55.000 0.00 0.00 0.00 5.80 F
1438 1891 0.602562 TGCGAATCAAAAAGGCCCTG 59.397 50.000 0.00 0.00 0.00 4.45 F
1439 1892 0.887933 GCGAATCAAAAAGGCCCTGA 59.112 50.000 0.00 0.00 0.00 3.86 F
1440 1893 1.272212 GCGAATCAAAAAGGCCCTGAA 59.728 47.619 0.00 0.00 0.00 3.02 F
3357 3865 1.349357 AGAAGAGAAGGGGTTGCTGAC 59.651 52.381 0.00 0.00 0.00 3.51 F
4248 4756 0.535780 CAACTCCTTGCTGCCACTGA 60.536 55.000 0.00 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2704 3194 0.999712 ATTCAGTAACAGGGGGTGGG 59.000 55.000 0.0 0.0 0.00 4.61 R
2907 3397 2.099756 ACTGCTTTCAACTTGGCTGTTC 59.900 45.455 0.0 0.0 34.22 3.18 R
3357 3865 3.465742 AACCATCATCATCACTCTCCG 57.534 47.619 0.0 0.0 0.00 4.63 R
3412 3920 4.332828 GCCTTTTCTTTGCCCTACTCTTA 58.667 43.478 0.0 0.0 0.00 2.10 R
4170 4678 5.104374 CACCTGCATAATCAACATTTCCAC 58.896 41.667 0.0 0.0 0.00 4.02 R
4248 4756 9.224267 GATATATGTTGTTGTTGCCATCTCTAT 57.776 33.333 0.0 0.0 0.00 1.98 R
5037 5550 1.294138 GCATGTGTTTGCTGCCCAT 59.706 52.632 0.0 0.0 39.57 4.00 R
6357 7081 2.217750 CGACATCTCTCTCTCCATCGT 58.782 52.381 0.0 0.0 0.00 3.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
180 508 1.001764 TCTTCGGCGTCTAGGTGGA 60.002 57.895 6.85 0.00 0.00 4.02
181 509 0.609957 TCTTCGGCGTCTAGGTGGAA 60.610 55.000 6.85 0.00 0.00 3.53
182 510 0.245539 CTTCGGCGTCTAGGTGGAAA 59.754 55.000 6.85 0.00 0.00 3.13
335 668 1.130561 GATTCAAGCGGCAACAGGTAC 59.869 52.381 1.45 0.00 0.00 3.34
337 670 0.320421 TCAAGCGGCAACAGGTACTC 60.320 55.000 1.45 0.00 34.60 2.59
338 671 0.320771 CAAGCGGCAACAGGTACTCT 60.321 55.000 1.45 0.00 34.60 3.24
339 672 1.067142 CAAGCGGCAACAGGTACTCTA 60.067 52.381 1.45 0.00 34.60 2.43
340 673 0.818296 AGCGGCAACAGGTACTCTAG 59.182 55.000 1.45 0.00 34.60 2.43
341 674 0.815734 GCGGCAACAGGTACTCTAGA 59.184 55.000 0.00 0.00 34.60 2.43
343 676 2.159085 GCGGCAACAGGTACTCTAGAAT 60.159 50.000 0.00 0.00 34.60 2.40
344 677 3.707793 CGGCAACAGGTACTCTAGAATC 58.292 50.000 0.00 0.00 34.60 2.52
429 864 1.047801 AAATGGTTTCAGCCCCACAC 58.952 50.000 0.00 0.00 32.49 3.82
446 881 3.545078 CCACACAGAAGCGTAATACGTAC 59.455 47.826 14.57 6.34 44.73 3.67
447 882 4.160594 CACACAGAAGCGTAATACGTACA 58.839 43.478 14.57 0.00 44.73 2.90
448 883 4.029861 CACACAGAAGCGTAATACGTACAC 59.970 45.833 14.57 0.00 44.73 2.90
450 885 4.262277 CACAGAAGCGTAATACGTACACAG 59.738 45.833 14.57 3.68 44.73 3.66
480 917 7.652909 TGCATTTGATTGTTTTCTTTCGAGAAT 59.347 29.630 0.00 0.00 0.00 2.40
494 931 7.913423 TCTTTCGAGAATGCTCTAAATTGATG 58.087 34.615 1.02 0.00 35.89 3.07
617 1054 2.510238 CCGAGGAGCCGCTCTTTG 60.510 66.667 19.68 15.64 0.00 2.77
666 1109 2.813908 GCTGCCGGACGTTCGATT 60.814 61.111 20.12 0.00 0.00 3.34
683 1126 5.868043 TCGATTCATGCATATCCATTGAC 57.132 39.130 0.00 0.00 0.00 3.18
704 1152 3.121544 CTGTCGTGATGATGATCCACTG 58.878 50.000 0.00 0.00 0.00 3.66
708 1156 3.704061 TCGTGATGATGATCCACTGGTTA 59.296 43.478 0.00 0.00 0.00 2.85
713 1161 4.908601 TGATGATCCACTGGTTAGTTGT 57.091 40.909 0.00 0.00 34.07 3.32
720 1168 3.057315 TCCACTGGTTAGTTGTACGTAGC 60.057 47.826 0.00 0.00 34.07 3.58
721 1169 3.305539 CCACTGGTTAGTTGTACGTAGCA 60.306 47.826 0.00 0.00 34.07 3.49
726 1174 3.306166 GGTTAGTTGTACGTAGCATGCAG 59.694 47.826 21.98 13.16 0.00 4.41
742 1190 4.202040 GCATGCAGATATGCCTGTTTGTTA 60.202 41.667 14.21 0.00 45.93 2.41
768 1216 0.179001 TCATGCATGCAGAGATGGGG 60.179 55.000 26.69 7.64 0.00 4.96
791 1239 4.022589 GTCTAGGCAGTGCAACCGTATATA 60.023 45.833 18.61 0.00 37.80 0.86
793 1241 2.963101 AGGCAGTGCAACCGTATATAGA 59.037 45.455 18.61 0.00 37.80 1.98
802 1250 5.029014 GCAACCGTATATAGAGATGTAGCG 58.971 45.833 0.00 0.00 0.00 4.26
805 1253 6.665474 ACCGTATATAGAGATGTAGCGAAG 57.335 41.667 0.00 0.00 0.00 3.79
810 1258 7.656542 CGTATATAGAGATGTAGCGAAGGGATA 59.343 40.741 0.00 0.00 0.00 2.59
837 1285 8.439964 AGTCCAATTAACCTAACCTACTACAA 57.560 34.615 0.00 0.00 0.00 2.41
838 1286 8.883302 AGTCCAATTAACCTAACCTACTACAAA 58.117 33.333 0.00 0.00 0.00 2.83
839 1287 9.676861 GTCCAATTAACCTAACCTACTACAAAT 57.323 33.333 0.00 0.00 0.00 2.32
864 1312 4.052159 ACTACAGAATTCTCGCATGGAG 57.948 45.455 4.57 3.63 44.58 3.86
866 1314 1.065926 ACAGAATTCTCGCATGGAGCA 60.066 47.619 4.57 0.00 46.13 4.26
867 1315 2.219458 CAGAATTCTCGCATGGAGCAT 58.781 47.619 4.57 0.00 46.13 3.79
871 1319 2.515926 TTCTCGCATGGAGCATAGAC 57.484 50.000 0.00 0.00 46.13 2.59
877 1325 1.858091 CATGGAGCATAGACGGACAC 58.142 55.000 0.00 0.00 0.00 3.67
884 1332 4.686554 GGAGCATAGACGGACACAATTATC 59.313 45.833 0.00 0.00 0.00 1.75
887 1335 7.050970 AGCATAGACGGACACAATTATCTTA 57.949 36.000 0.00 0.00 0.00 2.10
918 1366 3.944250 CTGGTGCCCGCCCTGATTT 62.944 63.158 0.00 0.00 0.00 2.17
919 1367 3.140814 GGTGCCCGCCCTGATTTC 61.141 66.667 0.00 0.00 0.00 2.17
920 1368 3.140814 GTGCCCGCCCTGATTTCC 61.141 66.667 0.00 0.00 0.00 3.13
929 1377 2.280628 GCCCTGATTTCCGTAACTGAG 58.719 52.381 0.00 0.00 0.00 3.35
930 1378 2.906354 CCCTGATTTCCGTAACTGAGG 58.094 52.381 0.00 0.00 0.00 3.86
936 1384 5.556915 TGATTTCCGTAACTGAGGACAAAT 58.443 37.500 0.00 0.00 36.06 2.32
950 1398 3.683365 GACAAATTGTCCCCTGCATTT 57.317 42.857 14.78 0.00 41.37 2.32
952 1400 3.742385 ACAAATTGTCCCCTGCATTTTG 58.258 40.909 0.00 0.00 40.28 2.44
953 1401 3.390639 ACAAATTGTCCCCTGCATTTTGA 59.609 39.130 15.08 0.00 38.45 2.69
954 1402 4.041938 ACAAATTGTCCCCTGCATTTTGAT 59.958 37.500 15.08 2.92 38.45 2.57
955 1403 4.476628 AATTGTCCCCTGCATTTTGATC 57.523 40.909 0.00 0.00 0.00 2.92
956 1404 2.905415 TGTCCCCTGCATTTTGATCT 57.095 45.000 0.00 0.00 0.00 2.75
957 1405 2.726821 TGTCCCCTGCATTTTGATCTC 58.273 47.619 0.00 0.00 0.00 2.75
958 1406 2.309755 TGTCCCCTGCATTTTGATCTCT 59.690 45.455 0.00 0.00 0.00 3.10
959 1407 2.686915 GTCCCCTGCATTTTGATCTCTG 59.313 50.000 0.00 0.00 0.00 3.35
960 1408 1.407979 CCCCTGCATTTTGATCTCTGC 59.592 52.381 0.00 0.00 35.21 4.26
961 1409 1.407979 CCCTGCATTTTGATCTCTGCC 59.592 52.381 0.00 0.00 33.70 4.85
962 1410 2.097036 CCTGCATTTTGATCTCTGCCA 58.903 47.619 0.00 0.00 33.70 4.92
963 1411 2.693591 CCTGCATTTTGATCTCTGCCAT 59.306 45.455 0.00 0.00 33.70 4.40
964 1412 3.490933 CCTGCATTTTGATCTCTGCCATG 60.491 47.826 0.00 0.00 33.70 3.66
982 1430 3.650950 GTTGGGGCCAGGCAGAGA 61.651 66.667 15.19 0.00 0.00 3.10
996 1444 1.737363 GCAGAGACGTTGGATCTGGAC 60.737 57.143 17.27 4.20 40.64 4.02
1016 1464 0.863119 GAAATGATTGCCGACGCTGC 60.863 55.000 0.00 0.00 35.36 5.25
1084 1537 1.045407 TGCTGGACTCCACGTTACTT 58.955 50.000 0.00 0.00 0.00 2.24
1087 1540 0.599558 TGGACTCCACGTTACTTCCG 59.400 55.000 0.00 0.00 0.00 4.30
1088 1541 0.883833 GGACTCCACGTTACTTCCGA 59.116 55.000 0.00 0.00 0.00 4.55
1089 1542 1.135460 GGACTCCACGTTACTTCCGAG 60.135 57.143 0.00 0.00 0.00 4.63
1090 1543 0.243095 ACTCCACGTTACTTCCGAGC 59.757 55.000 0.00 0.00 0.00 5.03
1091 1544 0.458025 CTCCACGTTACTTCCGAGCC 60.458 60.000 0.00 0.00 0.00 4.70
1092 1545 0.896940 TCCACGTTACTTCCGAGCCT 60.897 55.000 0.00 0.00 0.00 4.58
1093 1546 0.458025 CCACGTTACTTCCGAGCCTC 60.458 60.000 0.00 0.00 0.00 4.70
1094 1547 0.526662 CACGTTACTTCCGAGCCTCT 59.473 55.000 0.00 0.00 0.00 3.69
1095 1548 0.526662 ACGTTACTTCCGAGCCTCTG 59.473 55.000 0.00 0.00 0.00 3.35
1096 1549 0.179134 CGTTACTTCCGAGCCTCTGG 60.179 60.000 0.00 0.00 0.00 3.86
1097 1550 1.183549 GTTACTTCCGAGCCTCTGGA 58.816 55.000 1.85 1.85 0.00 3.86
1098 1551 1.135333 GTTACTTCCGAGCCTCTGGAG 59.865 57.143 5.64 0.00 35.26 3.86
1099 1552 0.624254 TACTTCCGAGCCTCTGGAGA 59.376 55.000 0.00 0.00 35.26 3.71
1100 1553 0.251832 ACTTCCGAGCCTCTGGAGAA 60.252 55.000 0.00 0.00 35.26 2.87
1101 1554 1.118838 CTTCCGAGCCTCTGGAGAAT 58.881 55.000 5.64 0.00 35.26 2.40
1102 1555 0.826715 TTCCGAGCCTCTGGAGAATG 59.173 55.000 5.64 0.00 35.26 2.67
1103 1556 1.227497 CCGAGCCTCTGGAGAATGC 60.227 63.158 0.00 0.00 0.00 3.56
1104 1557 1.227497 CGAGCCTCTGGAGAATGCC 60.227 63.158 0.00 0.00 0.00 4.40
1105 1558 1.910722 GAGCCTCTGGAGAATGCCA 59.089 57.895 0.00 0.00 36.30 4.92
1112 1565 3.670105 TGGAGAATGCCAGGTTTCC 57.330 52.632 0.00 0.00 33.10 3.13
1113 1566 0.776810 TGGAGAATGCCAGGTTTCCA 59.223 50.000 0.00 0.00 33.10 3.53
1114 1567 1.177401 GGAGAATGCCAGGTTTCCAC 58.823 55.000 0.00 0.00 0.00 4.02
1115 1568 0.804989 GAGAATGCCAGGTTTCCACG 59.195 55.000 0.00 0.00 0.00 4.94
1116 1569 1.212751 GAATGCCAGGTTTCCACGC 59.787 57.895 0.00 0.00 0.00 5.34
1117 1570 1.523154 GAATGCCAGGTTTCCACGCA 61.523 55.000 3.13 3.13 35.03 5.24
1118 1571 1.805428 AATGCCAGGTTTCCACGCAC 61.805 55.000 2.78 0.00 33.76 5.34
1119 1572 2.904866 GCCAGGTTTCCACGCACA 60.905 61.111 0.00 0.00 0.00 4.57
1120 1573 2.908073 GCCAGGTTTCCACGCACAG 61.908 63.158 0.00 0.00 0.00 3.66
1121 1574 1.227823 CCAGGTTTCCACGCACAGA 60.228 57.895 0.00 0.00 0.00 3.41
1122 1575 0.606401 CCAGGTTTCCACGCACAGAT 60.606 55.000 0.00 0.00 0.00 2.90
1123 1576 0.798776 CAGGTTTCCACGCACAGATC 59.201 55.000 0.00 0.00 0.00 2.75
1124 1577 0.687354 AGGTTTCCACGCACAGATCT 59.313 50.000 0.00 0.00 0.00 2.75
1125 1578 0.798776 GGTTTCCACGCACAGATCTG 59.201 55.000 21.37 21.37 0.00 2.90
1126 1579 1.608025 GGTTTCCACGCACAGATCTGA 60.608 52.381 29.27 1.44 0.00 3.27
1127 1580 2.350522 GTTTCCACGCACAGATCTGAT 58.649 47.619 29.27 10.64 0.00 2.90
1128 1581 2.744202 GTTTCCACGCACAGATCTGATT 59.256 45.455 29.27 4.71 0.00 2.57
1129 1582 3.885724 TTCCACGCACAGATCTGATTA 57.114 42.857 29.27 4.39 0.00 1.75
1130 1583 4.406648 TTCCACGCACAGATCTGATTAT 57.593 40.909 29.27 8.92 0.00 1.28
1131 1584 3.982475 TCCACGCACAGATCTGATTATC 58.018 45.455 29.27 11.10 0.00 1.75
1132 1585 3.638627 TCCACGCACAGATCTGATTATCT 59.361 43.478 29.27 2.25 36.64 1.98
1141 1594 4.095946 AGATCTGATTATCTGAGGGCTCC 58.904 47.826 7.77 0.00 34.87 4.70
1142 1595 3.627041 TCTGATTATCTGAGGGCTCCT 57.373 47.619 0.00 0.00 36.03 3.69
1143 1596 3.933886 TCTGATTATCTGAGGGCTCCTT 58.066 45.455 0.00 0.00 31.76 3.36
1144 1597 4.302067 TCTGATTATCTGAGGGCTCCTTT 58.698 43.478 0.00 0.00 31.76 3.11
1145 1598 4.102210 TCTGATTATCTGAGGGCTCCTTTG 59.898 45.833 0.00 0.00 31.76 2.77
1146 1599 4.040047 TGATTATCTGAGGGCTCCTTTGA 58.960 43.478 0.00 0.00 31.76 2.69
1147 1600 4.662179 TGATTATCTGAGGGCTCCTTTGAT 59.338 41.667 11.52 11.52 31.76 2.57
1148 1601 5.133322 TGATTATCTGAGGGCTCCTTTGATT 59.867 40.000 11.83 1.40 31.76 2.57
1149 1602 3.574354 ATCTGAGGGCTCCTTTGATTC 57.426 47.619 0.00 0.00 31.76 2.52
1150 1603 2.269023 TCTGAGGGCTCCTTTGATTCA 58.731 47.619 0.00 0.00 31.76 2.57
1151 1604 2.644299 TCTGAGGGCTCCTTTGATTCAA 59.356 45.455 0.00 0.00 31.76 2.69
1152 1605 3.074390 TCTGAGGGCTCCTTTGATTCAAA 59.926 43.478 11.19 11.19 31.76 2.69
1153 1606 4.021916 CTGAGGGCTCCTTTGATTCAAAT 58.978 43.478 12.04 0.00 32.70 2.32
1154 1607 5.044919 TCTGAGGGCTCCTTTGATTCAAATA 60.045 40.000 12.04 3.73 32.70 1.40
1155 1608 5.579047 TGAGGGCTCCTTTGATTCAAATAA 58.421 37.500 12.04 3.43 32.70 1.40
1156 1609 6.015918 TGAGGGCTCCTTTGATTCAAATAAA 58.984 36.000 12.04 1.22 32.70 1.40
1157 1610 6.669154 TGAGGGCTCCTTTGATTCAAATAAAT 59.331 34.615 12.04 0.00 32.70 1.40
1158 1611 7.180766 TGAGGGCTCCTTTGATTCAAATAAATT 59.819 33.333 12.04 0.00 32.70 1.82
1159 1612 8.608185 AGGGCTCCTTTGATTCAAATAAATTA 57.392 30.769 12.04 0.00 32.70 1.40
1160 1613 8.478066 AGGGCTCCTTTGATTCAAATAAATTAC 58.522 33.333 12.04 2.08 32.70 1.89
1161 1614 8.257306 GGGCTCCTTTGATTCAAATAAATTACA 58.743 33.333 12.04 0.00 32.70 2.41
1162 1615 9.822185 GGCTCCTTTGATTCAAATAAATTACAT 57.178 29.630 12.04 0.00 32.70 2.29
1177 1630 9.736819 AATAAATTACATAGGATTTTTGGGGGA 57.263 29.630 0.00 0.00 0.00 4.81
1178 1631 9.912461 ATAAATTACATAGGATTTTTGGGGGAT 57.088 29.630 0.00 0.00 0.00 3.85
1179 1632 8.637108 AAATTACATAGGATTTTTGGGGGATT 57.363 30.769 0.00 0.00 0.00 3.01
1180 1633 8.637108 AATTACATAGGATTTTTGGGGGATTT 57.363 30.769 0.00 0.00 0.00 2.17
1181 1634 5.955961 ACATAGGATTTTTGGGGGATTTG 57.044 39.130 0.00 0.00 0.00 2.32
1182 1635 5.598754 ACATAGGATTTTTGGGGGATTTGA 58.401 37.500 0.00 0.00 0.00 2.69
1183 1636 6.028780 ACATAGGATTTTTGGGGGATTTGAA 58.971 36.000 0.00 0.00 0.00 2.69
1184 1637 4.908601 AGGATTTTTGGGGGATTTGAAC 57.091 40.909 0.00 0.00 0.00 3.18
1185 1638 3.587061 AGGATTTTTGGGGGATTTGAACC 59.413 43.478 0.00 0.00 0.00 3.62
1186 1639 3.308117 GGATTTTTGGGGGATTTGAACCC 60.308 47.826 0.00 0.00 46.59 4.11
1187 1640 2.805290 TTTTGGGGGATTTGAACCCT 57.195 45.000 0.00 0.00 46.51 4.34
1188 1641 2.805290 TTTGGGGGATTTGAACCCTT 57.195 45.000 0.00 0.00 46.51 3.95
1189 1642 3.925261 TTTGGGGGATTTGAACCCTTA 57.075 42.857 0.00 0.00 46.51 2.69
1190 1643 3.466395 TTGGGGGATTTGAACCCTTAG 57.534 47.619 0.00 0.00 46.51 2.18
1191 1644 1.643811 TGGGGGATTTGAACCCTTAGG 59.356 52.381 0.00 0.00 46.51 2.69
1192 1645 1.927371 GGGGGATTTGAACCCTTAGGA 59.073 52.381 0.00 0.00 46.51 2.94
1193 1646 2.313643 GGGGGATTTGAACCCTTAGGAA 59.686 50.000 0.00 0.00 46.51 3.36
1194 1647 3.052109 GGGGGATTTGAACCCTTAGGAAT 60.052 47.826 0.00 0.00 46.51 3.01
1195 1648 4.574172 GGGGGATTTGAACCCTTAGGAATT 60.574 45.833 0.00 0.00 46.51 2.17
1196 1649 5.030147 GGGGATTTGAACCCTTAGGAATTT 58.970 41.667 0.00 0.00 46.03 1.82
1197 1650 5.487488 GGGGATTTGAACCCTTAGGAATTTT 59.513 40.000 0.00 0.00 46.03 1.82
1198 1651 6.012858 GGGGATTTGAACCCTTAGGAATTTTT 60.013 38.462 0.00 0.00 46.03 1.94
1199 1652 7.103641 GGGATTTGAACCCTTAGGAATTTTTC 58.896 38.462 0.00 0.00 43.65 2.29
1200 1653 7.796916 GGGATTTGAACCCTTAGGAATTTTTCC 60.797 40.741 0.00 0.00 45.57 3.13
1209 1662 2.947448 GGAATTTTTCCTGCGATGCT 57.053 45.000 0.00 0.00 46.57 3.79
1210 1663 2.802256 GGAATTTTTCCTGCGATGCTC 58.198 47.619 0.00 0.00 46.57 4.26
1211 1664 2.444351 GAATTTTTCCTGCGATGCTCG 58.556 47.619 0.00 1.80 43.89 5.03
1212 1665 1.453155 ATTTTTCCTGCGATGCTCGT 58.547 45.000 7.27 0.00 42.81 4.18
1213 1666 1.234821 TTTTTCCTGCGATGCTCGTT 58.765 45.000 7.27 0.00 42.81 3.85
1214 1667 1.234821 TTTTCCTGCGATGCTCGTTT 58.765 45.000 7.27 0.00 42.81 3.60
1215 1668 0.516877 TTTCCTGCGATGCTCGTTTG 59.483 50.000 7.27 0.00 42.81 2.93
1216 1669 0.320334 TTCCTGCGATGCTCGTTTGA 60.320 50.000 7.27 0.39 42.81 2.69
1217 1670 0.108186 TCCTGCGATGCTCGTTTGAT 60.108 50.000 7.27 0.00 42.81 2.57
1218 1671 0.729116 CCTGCGATGCTCGTTTGATT 59.271 50.000 7.27 0.00 42.81 2.57
1219 1672 1.267732 CCTGCGATGCTCGTTTGATTC 60.268 52.381 7.27 0.00 42.81 2.52
1220 1673 0.369931 TGCGATGCTCGTTTGATTCG 59.630 50.000 7.27 0.00 42.81 3.34
1221 1674 0.370273 GCGATGCTCGTTTGATTCGT 59.630 50.000 7.27 0.00 42.81 3.85
1222 1675 1.586578 GCGATGCTCGTTTGATTCGTA 59.413 47.619 7.27 0.00 42.81 3.43
1223 1676 2.346741 GCGATGCTCGTTTGATTCGTAG 60.347 50.000 7.27 0.00 42.81 3.51
1224 1677 2.216488 CGATGCTCGTTTGATTCGTAGG 59.784 50.000 0.00 0.00 34.72 3.18
1225 1678 3.444916 GATGCTCGTTTGATTCGTAGGA 58.555 45.455 0.00 0.00 0.00 2.94
1226 1679 3.520290 TGCTCGTTTGATTCGTAGGAT 57.480 42.857 0.00 0.00 0.00 3.24
1227 1680 3.857052 TGCTCGTTTGATTCGTAGGATT 58.143 40.909 0.00 0.00 0.00 3.01
1228 1681 3.616821 TGCTCGTTTGATTCGTAGGATTG 59.383 43.478 0.00 0.00 0.00 2.67
1229 1682 3.001330 GCTCGTTTGATTCGTAGGATTGG 59.999 47.826 0.00 0.00 0.00 3.16
1230 1683 2.933906 TCGTTTGATTCGTAGGATTGGC 59.066 45.455 0.00 0.00 0.00 4.52
1231 1684 2.675844 CGTTTGATTCGTAGGATTGGCA 59.324 45.455 0.00 0.00 0.00 4.92
1232 1685 3.312421 CGTTTGATTCGTAGGATTGGCAT 59.688 43.478 0.00 0.00 0.00 4.40
1233 1686 4.552767 CGTTTGATTCGTAGGATTGGCATC 60.553 45.833 0.00 0.00 0.00 3.91
1245 1698 5.876651 GGATTGGCATCCTTAGGAATTTT 57.123 39.130 4.56 0.00 45.41 1.82
1246 1699 6.239217 GGATTGGCATCCTTAGGAATTTTT 57.761 37.500 4.56 0.00 45.41 1.94
1247 1700 6.283694 GGATTGGCATCCTTAGGAATTTTTC 58.716 40.000 4.56 0.00 45.41 2.29
1248 1701 6.686378 GGATTGGCATCCTTAGGAATTTTTCC 60.686 42.308 4.56 4.56 46.52 3.13
1301 1754 7.089770 GGAATTTTCCATCTACTCAAACCTC 57.910 40.000 4.43 0.00 46.76 3.85
1302 1755 6.887002 GGAATTTTCCATCTACTCAAACCTCT 59.113 38.462 4.43 0.00 46.76 3.69
1303 1756 7.394641 GGAATTTTCCATCTACTCAAACCTCTT 59.605 37.037 4.43 0.00 46.76 2.85
1304 1757 8.712228 AATTTTCCATCTACTCAAACCTCTTT 57.288 30.769 0.00 0.00 0.00 2.52
1305 1758 7.510549 TTTTCCATCTACTCAAACCTCTTTG 57.489 36.000 0.00 0.00 38.56 2.77
1306 1759 5.825593 TCCATCTACTCAAACCTCTTTGT 57.174 39.130 0.00 0.00 38.38 2.83
1307 1760 6.928348 TCCATCTACTCAAACCTCTTTGTA 57.072 37.500 0.00 0.00 38.38 2.41
1308 1761 6.936279 TCCATCTACTCAAACCTCTTTGTAG 58.064 40.000 0.00 0.00 38.38 2.74
1309 1762 6.724441 TCCATCTACTCAAACCTCTTTGTAGA 59.276 38.462 0.00 0.00 38.38 2.59
1310 1763 7.234782 TCCATCTACTCAAACCTCTTTGTAGAA 59.765 37.037 0.00 0.00 38.38 2.10
1311 1764 8.043710 CCATCTACTCAAACCTCTTTGTAGAAT 58.956 37.037 0.00 0.00 38.38 2.40
1312 1765 9.442047 CATCTACTCAAACCTCTTTGTAGAATT 57.558 33.333 0.00 0.00 38.38 2.17
1313 1766 9.660180 ATCTACTCAAACCTCTTTGTAGAATTC 57.340 33.333 0.00 0.00 38.38 2.17
1314 1767 8.095169 TCTACTCAAACCTCTTTGTAGAATTCC 58.905 37.037 0.65 0.00 38.38 3.01
1315 1768 6.842676 ACTCAAACCTCTTTGTAGAATTCCT 58.157 36.000 0.65 0.00 38.38 3.36
1316 1769 7.290813 ACTCAAACCTCTTTGTAGAATTCCTT 58.709 34.615 0.65 0.00 38.38 3.36
1317 1770 7.780271 ACTCAAACCTCTTTGTAGAATTCCTTT 59.220 33.333 0.65 0.00 38.38 3.11
1318 1771 7.940850 TCAAACCTCTTTGTAGAATTCCTTTG 58.059 34.615 0.65 0.00 38.38 2.77
1319 1772 7.559897 TCAAACCTCTTTGTAGAATTCCTTTGT 59.440 33.333 0.65 0.00 38.38 2.83
1320 1773 7.898014 AACCTCTTTGTAGAATTCCTTTGTT 57.102 32.000 0.65 0.00 0.00 2.83
1321 1774 7.898014 ACCTCTTTGTAGAATTCCTTTGTTT 57.102 32.000 0.65 0.00 0.00 2.83
1322 1775 8.306313 ACCTCTTTGTAGAATTCCTTTGTTTT 57.694 30.769 0.65 0.00 0.00 2.43
1323 1776 8.758829 ACCTCTTTGTAGAATTCCTTTGTTTTT 58.241 29.630 0.65 0.00 0.00 1.94
1324 1777 9.249457 CCTCTTTGTAGAATTCCTTTGTTTTTC 57.751 33.333 0.65 0.00 0.00 2.29
1325 1778 9.249457 CTCTTTGTAGAATTCCTTTGTTTTTCC 57.751 33.333 0.65 0.00 0.00 3.13
1326 1779 8.201464 TCTTTGTAGAATTCCTTTGTTTTTCCC 58.799 33.333 0.65 0.00 0.00 3.97
1327 1780 6.079424 TGTAGAATTCCTTTGTTTTTCCCG 57.921 37.500 0.65 0.00 0.00 5.14
1328 1781 3.990092 AGAATTCCTTTGTTTTTCCCGC 58.010 40.909 0.65 0.00 0.00 6.13
1329 1782 2.432206 ATTCCTTTGTTTTTCCCGCG 57.568 45.000 0.00 0.00 0.00 6.46
1330 1783 0.249114 TTCCTTTGTTTTTCCCGCGC 60.249 50.000 0.00 0.00 0.00 6.86
1331 1784 1.104577 TCCTTTGTTTTTCCCGCGCT 61.105 50.000 5.56 0.00 0.00 5.92
1332 1785 0.594110 CCTTTGTTTTTCCCGCGCTA 59.406 50.000 5.56 0.00 0.00 4.26
1333 1786 1.201414 CCTTTGTTTTTCCCGCGCTAT 59.799 47.619 5.56 0.00 0.00 2.97
1334 1787 2.515912 CTTTGTTTTTCCCGCGCTATC 58.484 47.619 5.56 0.00 0.00 2.08
1335 1788 1.524848 TTGTTTTTCCCGCGCTATCA 58.475 45.000 5.56 0.00 0.00 2.15
1336 1789 1.524848 TGTTTTTCCCGCGCTATCAA 58.475 45.000 5.56 0.00 0.00 2.57
1337 1790 1.880675 TGTTTTTCCCGCGCTATCAAA 59.119 42.857 5.56 0.00 0.00 2.69
1338 1791 2.490115 TGTTTTTCCCGCGCTATCAAAT 59.510 40.909 5.56 0.00 0.00 2.32
1339 1792 3.690139 TGTTTTTCCCGCGCTATCAAATA 59.310 39.130 5.56 0.00 0.00 1.40
1340 1793 4.156190 TGTTTTTCCCGCGCTATCAAATAA 59.844 37.500 5.56 0.00 0.00 1.40
1341 1794 5.163602 TGTTTTTCCCGCGCTATCAAATAAT 60.164 36.000 5.56 0.00 0.00 1.28
1342 1795 4.742438 TTTCCCGCGCTATCAAATAATC 57.258 40.909 5.56 0.00 0.00 1.75
1343 1796 3.678056 TCCCGCGCTATCAAATAATCT 57.322 42.857 5.56 0.00 0.00 2.40
1344 1797 4.002906 TCCCGCGCTATCAAATAATCTT 57.997 40.909 5.56 0.00 0.00 2.40
1345 1798 4.385825 TCCCGCGCTATCAAATAATCTTT 58.614 39.130 5.56 0.00 0.00 2.52
1346 1799 4.451096 TCCCGCGCTATCAAATAATCTTTC 59.549 41.667 5.56 0.00 0.00 2.62
1347 1800 4.213270 CCCGCGCTATCAAATAATCTTTCA 59.787 41.667 5.56 0.00 0.00 2.69
1348 1801 5.277779 CCCGCGCTATCAAATAATCTTTCAA 60.278 40.000 5.56 0.00 0.00 2.69
1349 1802 6.198687 CCGCGCTATCAAATAATCTTTCAAA 58.801 36.000 5.56 0.00 0.00 2.69
1350 1803 6.857964 CCGCGCTATCAAATAATCTTTCAAAT 59.142 34.615 5.56 0.00 0.00 2.32
1351 1804 7.059945 CCGCGCTATCAAATAATCTTTCAAATC 59.940 37.037 5.56 0.00 0.00 2.17
1352 1805 7.587392 CGCGCTATCAAATAATCTTTCAAATCA 59.413 33.333 5.56 0.00 0.00 2.57
1353 1806 9.403110 GCGCTATCAAATAATCTTTCAAATCAT 57.597 29.630 0.00 0.00 0.00 2.45
1386 1839 3.668821 TGGGACATGTCATCCTATTCCT 58.331 45.455 26.47 0.00 36.40 3.36
1387 1840 3.392285 TGGGACATGTCATCCTATTCCTG 59.608 47.826 26.47 0.00 36.40 3.86
1388 1841 3.406764 GGACATGTCATCCTATTCCTGC 58.593 50.000 26.47 1.34 33.03 4.85
1389 1842 3.181451 GGACATGTCATCCTATTCCTGCA 60.181 47.826 26.47 0.00 33.03 4.41
1390 1843 4.506271 GGACATGTCATCCTATTCCTGCAT 60.506 45.833 26.47 0.00 33.03 3.96
1391 1844 5.057843 ACATGTCATCCTATTCCTGCATT 57.942 39.130 0.00 0.00 0.00 3.56
1392 1845 5.452255 ACATGTCATCCTATTCCTGCATTT 58.548 37.500 0.00 0.00 0.00 2.32
1393 1846 5.895534 ACATGTCATCCTATTCCTGCATTTT 59.104 36.000 0.00 0.00 0.00 1.82
1394 1847 6.381994 ACATGTCATCCTATTCCTGCATTTTT 59.618 34.615 0.00 0.00 0.00 1.94
1421 1874 8.686334 TCTATTCCTTTATTTTGACAATCCTGC 58.314 33.333 0.00 0.00 0.00 4.85
1422 1875 5.309323 TCCTTTATTTTGACAATCCTGCG 57.691 39.130 0.00 0.00 0.00 5.18
1423 1876 5.007034 TCCTTTATTTTGACAATCCTGCGA 58.993 37.500 0.00 0.00 0.00 5.10
1424 1877 5.475220 TCCTTTATTTTGACAATCCTGCGAA 59.525 36.000 0.00 0.00 0.00 4.70
1425 1878 6.152661 TCCTTTATTTTGACAATCCTGCGAAT 59.847 34.615 0.00 0.00 0.00 3.34
1426 1879 6.473455 CCTTTATTTTGACAATCCTGCGAATC 59.527 38.462 0.00 0.00 0.00 2.52
1427 1880 6.507958 TTATTTTGACAATCCTGCGAATCA 57.492 33.333 0.00 0.00 0.00 2.57
1428 1881 4.844998 TTTTGACAATCCTGCGAATCAA 57.155 36.364 0.00 0.00 0.00 2.57
1429 1882 4.844998 TTTGACAATCCTGCGAATCAAA 57.155 36.364 0.00 0.00 34.57 2.69
1430 1883 4.844998 TTGACAATCCTGCGAATCAAAA 57.155 36.364 0.00 0.00 0.00 2.44
1431 1884 4.844998 TGACAATCCTGCGAATCAAAAA 57.155 36.364 0.00 0.00 0.00 1.94
1432 1885 4.797471 TGACAATCCTGCGAATCAAAAAG 58.203 39.130 0.00 0.00 0.00 2.27
1433 1886 4.168760 GACAATCCTGCGAATCAAAAAGG 58.831 43.478 0.00 0.00 0.00 3.11
1434 1887 2.925563 CAATCCTGCGAATCAAAAAGGC 59.074 45.455 0.00 0.00 0.00 4.35
1435 1888 0.887933 TCCTGCGAATCAAAAAGGCC 59.112 50.000 0.00 0.00 0.00 5.19
1436 1889 0.108662 CCTGCGAATCAAAAAGGCCC 60.109 55.000 0.00 0.00 0.00 5.80
1437 1890 0.890683 CTGCGAATCAAAAAGGCCCT 59.109 50.000 0.00 0.00 0.00 5.19
1438 1891 0.602562 TGCGAATCAAAAAGGCCCTG 59.397 50.000 0.00 0.00 0.00 4.45
1439 1892 0.887933 GCGAATCAAAAAGGCCCTGA 59.112 50.000 0.00 0.00 0.00 3.86
1440 1893 1.272212 GCGAATCAAAAAGGCCCTGAA 59.728 47.619 0.00 0.00 0.00 3.02
1441 1894 2.094026 GCGAATCAAAAAGGCCCTGAAT 60.094 45.455 0.00 0.00 0.00 2.57
1442 1895 3.514645 CGAATCAAAAAGGCCCTGAATG 58.485 45.455 0.00 0.00 0.00 2.67
1443 1896 3.056607 CGAATCAAAAAGGCCCTGAATGT 60.057 43.478 0.00 0.00 0.00 2.71
1444 1897 3.967332 ATCAAAAAGGCCCTGAATGTG 57.033 42.857 0.00 0.00 0.00 3.21
1445 1898 1.969923 TCAAAAAGGCCCTGAATGTGG 59.030 47.619 0.00 0.00 0.00 4.17
1514 1967 3.897141 TGCAGATTGGTACCACGATTA 57.103 42.857 16.04 0.00 0.00 1.75
2016 2504 2.500504 CTGTAAGTACCCTTGTCCTCCC 59.499 54.545 0.00 0.00 31.89 4.30
2074 2562 7.651704 AGGGTTTGTTCATCTTTTTGTTTATCG 59.348 33.333 0.00 0.00 0.00 2.92
2525 3015 8.267894 AGCTGTGTGGTTCAGATATTACTTATT 58.732 33.333 0.00 0.00 35.20 1.40
2546 3036 4.933505 TTGAATTTGGTTGCAGTGATGA 57.066 36.364 0.00 0.00 0.00 2.92
2704 3194 1.403323 GATTTGCTAGTCAGGGCTTGC 59.597 52.381 0.37 0.37 37.65 4.01
2722 3212 1.785353 GCCCACCCCCTGTTACTGAA 61.785 60.000 0.00 0.00 0.00 3.02
2907 3397 3.054878 GCACACAAGAAAGCAAGAATGG 58.945 45.455 0.00 0.00 0.00 3.16
3328 3836 2.169352 ACCTGATTTCAGACCATCCTCG 59.831 50.000 9.15 0.00 46.59 4.63
3353 3861 2.568623 TGAAGAAGAGAAGGGGTTGC 57.431 50.000 0.00 0.00 0.00 4.17
3357 3865 1.349357 AGAAGAGAAGGGGTTGCTGAC 59.651 52.381 0.00 0.00 0.00 3.51
3412 3920 6.321435 CCTCTTTTGTCCTACCAAAGAAAAGT 59.679 38.462 7.47 0.00 35.85 2.66
4248 4756 0.535780 CAACTCCTTGCTGCCACTGA 60.536 55.000 0.00 0.00 0.00 3.41
4304 4812 3.788227 TTGGCATAGTTGGACAAGAGT 57.212 42.857 0.00 0.00 0.00 3.24
4448 4956 8.087982 TCATTTTGTTTTGCACAAGTGTTAAA 57.912 26.923 1.79 2.08 46.37 1.52
4853 5365 8.043710 ACATTCTAGATGTTAGGAGAAAACCTG 58.956 37.037 0.00 0.00 40.81 4.00
4876 5388 3.744940 AGGACAATGTGTGATGGGATT 57.255 42.857 0.00 0.00 0.00 3.01
5037 5550 5.010213 GGGTCAACTTATGGCAAGTTACAAA 59.990 40.000 4.35 0.00 38.32 2.83
5106 5619 2.257207 CAGGAAGTGGGACCTTAGTGA 58.743 52.381 0.00 0.00 33.91 3.41
5478 5996 9.120538 GAGGAAGAATAAGCATGTGGTAATAAA 57.879 33.333 0.00 0.00 0.00 1.40
5870 6508 3.702045 GGATGTCCTACTTCACTGCTAGT 59.298 47.826 0.00 0.00 0.00 2.57
6050 6772 6.263617 GTGGAACTTGAGGTGGTTATTGTAAA 59.736 38.462 0.00 0.00 0.00 2.01
6153 6876 3.176708 CTGCTATTTGTTGCATGTCAGC 58.823 45.455 0.00 0.00 38.59 4.26
6422 7146 2.849966 CGGATTTCGTCGAGCTGCG 61.850 63.158 0.00 5.84 42.69 5.18
6598 7323 1.303309 GTGGATGCTATGGTGAGTGC 58.697 55.000 0.00 0.00 0.00 4.40
6830 7556 6.666678 AGAGGAAGATCAATTTCCAATGCTA 58.333 36.000 13.17 0.00 45.28 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.365265 CTGGCACCGAGTTTGGGC 61.365 66.667 0.00 0.00 0.00 5.36
13 14 4.329545 GCTCCCAACTGGCACCGA 62.330 66.667 0.00 0.00 0.00 4.69
104 431 1.538687 AATGGAAGCTTGTGCCCAGC 61.539 55.000 2.10 0.00 40.80 4.85
152 480 4.771127 GCCGAAGAGGTGAACACA 57.229 55.556 7.25 0.00 43.70 3.72
180 508 5.954150 AGACCTTATCCATCTGCATGTTTTT 59.046 36.000 0.00 0.00 0.00 1.94
181 509 5.513233 AGACCTTATCCATCTGCATGTTTT 58.487 37.500 0.00 0.00 0.00 2.43
182 510 5.121380 AGACCTTATCCATCTGCATGTTT 57.879 39.130 0.00 0.00 0.00 2.83
307 639 1.696832 GCCGCTTGAATCGTGTCCTC 61.697 60.000 0.00 0.00 0.00 3.71
315 648 1.130561 GTACCTGTTGCCGCTTGAATC 59.869 52.381 0.00 0.00 0.00 2.52
335 668 8.716646 TCGATCTTAGCATCTAGATTCTAGAG 57.283 38.462 23.87 17.49 31.46 2.43
337 670 8.390354 CACTCGATCTTAGCATCTAGATTCTAG 58.610 40.741 13.60 13.60 31.46 2.43
338 671 8.097662 TCACTCGATCTTAGCATCTAGATTCTA 58.902 37.037 7.89 7.89 31.46 2.10
339 672 6.939730 TCACTCGATCTTAGCATCTAGATTCT 59.060 38.462 9.88 9.88 31.46 2.40
340 673 7.021196 GTCACTCGATCTTAGCATCTAGATTC 58.979 42.308 1.33 0.00 31.46 2.52
341 674 6.348132 CGTCACTCGATCTTAGCATCTAGATT 60.348 42.308 1.33 0.00 42.86 2.40
343 676 4.449405 CGTCACTCGATCTTAGCATCTAGA 59.551 45.833 0.00 0.00 42.86 2.43
344 677 4.449405 TCGTCACTCGATCTTAGCATCTAG 59.551 45.833 0.00 0.00 44.01 2.43
392 826 3.521765 TTGTGGGTGATGTGGGGCC 62.522 63.158 0.00 0.00 0.00 5.80
415 850 0.954452 CTTCTGTGTGGGGCTGAAAC 59.046 55.000 0.00 0.00 0.00 2.78
446 881 3.021269 ACAATCAAATGCAGTGCTGTG 57.979 42.857 17.60 11.37 0.00 3.66
447 882 3.738830 AACAATCAAATGCAGTGCTGT 57.261 38.095 17.60 7.39 0.00 4.40
448 883 4.748102 AGAAAACAATCAAATGCAGTGCTG 59.252 37.500 17.60 6.59 0.00 4.41
450 885 5.662211 AAGAAAACAATCAAATGCAGTGC 57.338 34.783 8.58 8.58 0.00 4.40
480 917 2.708216 TCCGCCATCAATTTAGAGCA 57.292 45.000 0.00 0.00 0.00 4.26
657 1094 3.727726 TGGATATGCATGAATCGAACGT 58.272 40.909 10.16 0.00 0.00 3.99
666 1109 4.060205 CGACAGTCAATGGATATGCATGA 58.940 43.478 10.79 7.70 0.00 3.07
683 1126 3.121544 CAGTGGATCATCATCACGACAG 58.878 50.000 0.00 0.00 0.00 3.51
704 1152 3.255725 TGCATGCTACGTACAACTAACC 58.744 45.455 20.33 0.00 0.00 2.85
708 1156 3.526931 ATCTGCATGCTACGTACAACT 57.473 42.857 20.33 0.00 0.00 3.16
721 1169 6.671646 GGGTAACAAACAGGCATATCTGCAT 61.672 44.000 5.36 0.00 45.58 3.96
726 1174 3.626930 TGGGGTAACAAACAGGCATATC 58.373 45.455 0.00 0.00 39.74 1.63
742 1190 0.032912 TCTGCATGCATGATTGGGGT 60.033 50.000 30.64 0.00 0.00 4.95
768 1216 0.245539 TACGGTTGCACTGCCTAGAC 59.754 55.000 0.00 0.00 0.00 2.59
791 1239 5.822204 ACTATATCCCTTCGCTACATCTCT 58.178 41.667 0.00 0.00 0.00 3.10
793 1241 4.951094 GGACTATATCCCTTCGCTACATCT 59.049 45.833 0.00 0.00 42.46 2.90
810 1258 9.719433 TGTAGTAGGTTAGGTTAATTGGACTAT 57.281 33.333 0.00 0.00 0.00 2.12
832 1280 9.171701 GCGAGAATTCTGTAGTAGTATTTGTAG 57.828 37.037 14.00 0.00 0.00 2.74
834 1282 7.544622 TGCGAGAATTCTGTAGTAGTATTTGT 58.455 34.615 14.00 0.00 0.00 2.83
835 1283 7.987268 TGCGAGAATTCTGTAGTAGTATTTG 57.013 36.000 14.00 0.00 0.00 2.32
837 1285 7.014326 TCCATGCGAGAATTCTGTAGTAGTATT 59.986 37.037 14.00 0.00 0.00 1.89
838 1286 6.490381 TCCATGCGAGAATTCTGTAGTAGTAT 59.510 38.462 14.00 0.00 0.00 2.12
839 1287 5.826208 TCCATGCGAGAATTCTGTAGTAGTA 59.174 40.000 14.00 0.00 0.00 1.82
840 1288 4.645136 TCCATGCGAGAATTCTGTAGTAGT 59.355 41.667 14.00 0.00 0.00 2.73
841 1289 5.188327 TCCATGCGAGAATTCTGTAGTAG 57.812 43.478 14.00 0.00 0.00 2.57
842 1290 4.499865 GCTCCATGCGAGAATTCTGTAGTA 60.500 45.833 14.00 4.14 41.63 1.82
846 1294 1.065926 TGCTCCATGCGAGAATTCTGT 60.066 47.619 14.00 0.00 46.63 3.41
864 1312 7.891183 ATAAGATAATTGTGTCCGTCTATGC 57.109 36.000 0.00 0.00 0.00 3.14
867 1315 9.529325 CTGAAATAAGATAATTGTGTCCGTCTA 57.471 33.333 0.00 0.00 0.00 2.59
871 1319 7.337718 CGTCTGAAATAAGATAATTGTGTCCG 58.662 38.462 0.00 0.00 0.00 4.79
877 1325 7.041780 CCAGTCCCGTCTGAAATAAGATAATTG 60.042 40.741 0.00 0.00 37.61 2.32
884 1332 3.262420 CACCAGTCCCGTCTGAAATAAG 58.738 50.000 0.00 0.00 37.61 1.73
887 1335 0.321653 GCACCAGTCCCGTCTGAAAT 60.322 55.000 0.00 0.00 37.61 2.17
909 1357 2.280628 CTCAGTTACGGAAATCAGGGC 58.719 52.381 0.00 0.00 0.00 5.19
918 1366 4.312443 GACAATTTGTCCTCAGTTACGGA 58.688 43.478 17.07 0.00 41.37 4.69
919 1367 4.663636 GACAATTTGTCCTCAGTTACGG 57.336 45.455 17.07 0.00 41.37 4.02
930 1378 3.683365 AAATGCAGGGGACAATTTGTC 57.317 42.857 19.17 19.17 46.23 3.18
936 1384 3.091545 GAGATCAAAATGCAGGGGACAA 58.908 45.455 0.00 0.00 0.00 3.18
950 1398 1.341285 CCCAACCATGGCAGAGATCAA 60.341 52.381 13.04 0.00 46.09 2.57
952 1400 0.466922 CCCCAACCATGGCAGAGATC 60.467 60.000 13.04 0.00 46.09 2.75
953 1401 1.616921 CCCCAACCATGGCAGAGAT 59.383 57.895 13.04 0.00 46.09 2.75
954 1402 3.089838 CCCCAACCATGGCAGAGA 58.910 61.111 13.04 0.00 46.09 3.10
961 1409 4.700448 TGCCTGGCCCCAACCATG 62.700 66.667 17.53 0.00 39.54 3.66
962 1410 4.387343 CTGCCTGGCCCCAACCAT 62.387 66.667 17.53 0.00 39.54 3.55
964 1412 4.748144 CTCTGCCTGGCCCCAACC 62.748 72.222 17.53 0.00 0.00 3.77
982 1430 2.028476 TCATTTCGTCCAGATCCAACGT 60.028 45.455 10.68 0.00 37.64 3.99
996 1444 0.587242 CAGCGTCGGCAATCATTTCG 60.587 55.000 0.00 0.00 43.41 3.46
1084 1537 1.680522 GCATTCTCCAGAGGCTCGGA 61.681 60.000 21.24 21.24 0.00 4.55
1087 1540 1.910722 TGGCATTCTCCAGAGGCTC 59.089 57.895 6.34 6.34 0.00 4.70
1088 1541 4.159099 TGGCATTCTCCAGAGGCT 57.841 55.556 0.00 0.00 0.00 4.58
1094 1547 0.776810 TGGAAACCTGGCATTCTCCA 59.223 50.000 11.28 5.94 34.42 3.86
1095 1548 1.177401 GTGGAAACCTGGCATTCTCC 58.823 55.000 11.28 3.76 0.00 3.71
1096 1549 0.804989 CGTGGAAACCTGGCATTCTC 59.195 55.000 11.28 4.46 0.00 2.87
1097 1550 1.244019 GCGTGGAAACCTGGCATTCT 61.244 55.000 11.28 0.00 0.00 2.40
1098 1551 1.212751 GCGTGGAAACCTGGCATTC 59.787 57.895 0.00 0.00 0.00 2.67
1099 1552 1.530419 TGCGTGGAAACCTGGCATT 60.530 52.632 0.00 0.00 30.31 3.56
1100 1553 2.115052 TGCGTGGAAACCTGGCAT 59.885 55.556 0.00 0.00 30.31 4.40
1101 1554 2.904866 GTGCGTGGAAACCTGGCA 60.905 61.111 0.00 0.00 32.12 4.92
1102 1555 2.904866 TGTGCGTGGAAACCTGGC 60.905 61.111 0.00 0.00 0.00 4.85
1103 1556 0.606401 ATCTGTGCGTGGAAACCTGG 60.606 55.000 0.00 0.00 0.00 4.45
1104 1557 0.798776 GATCTGTGCGTGGAAACCTG 59.201 55.000 0.00 0.00 0.00 4.00
1105 1558 0.687354 AGATCTGTGCGTGGAAACCT 59.313 50.000 0.00 0.00 0.00 3.50
1106 1559 0.798776 CAGATCTGTGCGTGGAAACC 59.201 55.000 14.95 0.00 0.00 3.27
1107 1560 1.795768 TCAGATCTGTGCGTGGAAAC 58.204 50.000 21.92 0.00 0.00 2.78
1108 1561 2.768253 ATCAGATCTGTGCGTGGAAA 57.232 45.000 21.92 0.00 0.00 3.13
1109 1562 2.768253 AATCAGATCTGTGCGTGGAA 57.232 45.000 21.92 0.62 0.00 3.53
1110 1563 3.638627 AGATAATCAGATCTGTGCGTGGA 59.361 43.478 21.92 1.39 34.79 4.02
1111 1564 3.739810 CAGATAATCAGATCTGTGCGTGG 59.260 47.826 21.92 4.85 45.27 4.94
1112 1565 4.968660 CAGATAATCAGATCTGTGCGTG 57.031 45.455 21.92 9.71 45.27 5.34
1119 1572 4.095946 GGAGCCCTCAGATAATCAGATCT 58.904 47.826 0.00 0.00 36.58 2.75
1120 1573 4.095946 AGGAGCCCTCAGATAATCAGATC 58.904 47.826 0.00 0.00 0.00 2.75
1121 1574 4.144825 AGGAGCCCTCAGATAATCAGAT 57.855 45.455 0.00 0.00 0.00 2.90
1122 1575 3.627041 AGGAGCCCTCAGATAATCAGA 57.373 47.619 0.00 0.00 0.00 3.27
1123 1576 4.102210 TCAAAGGAGCCCTCAGATAATCAG 59.898 45.833 0.00 0.00 30.89 2.90
1124 1577 4.040047 TCAAAGGAGCCCTCAGATAATCA 58.960 43.478 0.00 0.00 30.89 2.57
1125 1578 4.696479 TCAAAGGAGCCCTCAGATAATC 57.304 45.455 0.00 0.00 30.89 1.75
1126 1579 5.133322 TGAATCAAAGGAGCCCTCAGATAAT 59.867 40.000 0.00 0.00 30.46 1.28
1127 1580 4.474651 TGAATCAAAGGAGCCCTCAGATAA 59.525 41.667 0.00 1.26 30.46 1.75
1128 1581 4.040047 TGAATCAAAGGAGCCCTCAGATA 58.960 43.478 0.00 0.00 30.46 1.98
1129 1582 2.848694 TGAATCAAAGGAGCCCTCAGAT 59.151 45.455 0.00 0.00 30.89 2.90
1130 1583 2.269023 TGAATCAAAGGAGCCCTCAGA 58.731 47.619 0.00 0.00 30.89 3.27
1131 1584 2.795231 TGAATCAAAGGAGCCCTCAG 57.205 50.000 0.00 0.00 30.89 3.35
1132 1585 3.524095 TTTGAATCAAAGGAGCCCTCA 57.476 42.857 4.03 0.00 30.89 3.86
1133 1586 6.530019 TTTATTTGAATCAAAGGAGCCCTC 57.470 37.500 14.10 0.00 36.76 4.30
1134 1587 7.500629 AATTTATTTGAATCAAAGGAGCCCT 57.499 32.000 14.10 0.00 36.76 5.19
1135 1588 8.257306 TGTAATTTATTTGAATCAAAGGAGCCC 58.743 33.333 14.10 0.92 36.76 5.19
1136 1589 9.822185 ATGTAATTTATTTGAATCAAAGGAGCC 57.178 29.630 14.10 0.37 36.76 4.70
1151 1604 9.736819 TCCCCCAAAAATCCTATGTAATTTATT 57.263 29.630 0.00 0.00 0.00 1.40
1152 1605 9.912461 ATCCCCCAAAAATCCTATGTAATTTAT 57.088 29.630 0.00 0.00 0.00 1.40
1153 1606 9.736819 AATCCCCCAAAAATCCTATGTAATTTA 57.263 29.630 0.00 0.00 0.00 1.40
1154 1607 8.637108 AATCCCCCAAAAATCCTATGTAATTT 57.363 30.769 0.00 0.00 0.00 1.82
1155 1608 8.493607 CAAATCCCCCAAAAATCCTATGTAATT 58.506 33.333 0.00 0.00 0.00 1.40
1156 1609 7.848875 TCAAATCCCCCAAAAATCCTATGTAAT 59.151 33.333 0.00 0.00 0.00 1.89
1157 1610 7.192628 TCAAATCCCCCAAAAATCCTATGTAA 58.807 34.615 0.00 0.00 0.00 2.41
1158 1611 6.746894 TCAAATCCCCCAAAAATCCTATGTA 58.253 36.000 0.00 0.00 0.00 2.29
1159 1612 5.598754 TCAAATCCCCCAAAAATCCTATGT 58.401 37.500 0.00 0.00 0.00 2.29
1160 1613 6.348498 GTTCAAATCCCCCAAAAATCCTATG 58.652 40.000 0.00 0.00 0.00 2.23
1161 1614 5.428457 GGTTCAAATCCCCCAAAAATCCTAT 59.572 40.000 0.00 0.00 0.00 2.57
1162 1615 4.780554 GGTTCAAATCCCCCAAAAATCCTA 59.219 41.667 0.00 0.00 0.00 2.94
1163 1616 3.587061 GGTTCAAATCCCCCAAAAATCCT 59.413 43.478 0.00 0.00 0.00 3.24
1164 1617 3.308117 GGGTTCAAATCCCCCAAAAATCC 60.308 47.826 0.00 0.00 39.08 3.01
1165 1618 3.587061 AGGGTTCAAATCCCCCAAAAATC 59.413 43.478 0.00 0.00 45.64 2.17
1166 1619 3.608067 AGGGTTCAAATCCCCCAAAAAT 58.392 40.909 0.00 0.00 45.64 1.82
1167 1620 3.067645 AGGGTTCAAATCCCCCAAAAA 57.932 42.857 0.00 0.00 45.64 1.94
1168 1621 2.805290 AGGGTTCAAATCCCCCAAAA 57.195 45.000 0.00 0.00 45.64 2.44
1169 1622 2.805290 AAGGGTTCAAATCCCCCAAA 57.195 45.000 0.00 0.00 45.64 3.28
1170 1623 2.043801 CCTAAGGGTTCAAATCCCCCAA 59.956 50.000 0.00 0.00 45.64 4.12
1171 1624 1.643811 CCTAAGGGTTCAAATCCCCCA 59.356 52.381 0.00 0.00 45.64 4.96
1172 1625 1.927371 TCCTAAGGGTTCAAATCCCCC 59.073 52.381 0.00 0.00 45.64 5.40
1173 1626 3.750501 TTCCTAAGGGTTCAAATCCCC 57.249 47.619 0.00 0.00 45.64 4.81
1174 1627 6.620877 AAAATTCCTAAGGGTTCAAATCCC 57.379 37.500 0.00 0.00 44.90 3.85
1175 1628 7.103641 GGAAAAATTCCTAAGGGTTCAAATCC 58.896 38.462 1.86 0.00 46.57 3.01
1204 1657 3.444916 TCCTACGAATCAAACGAGCATC 58.555 45.455 0.00 0.00 34.70 3.91
1205 1658 3.520290 TCCTACGAATCAAACGAGCAT 57.480 42.857 0.00 0.00 34.70 3.79
1206 1659 3.520290 ATCCTACGAATCAAACGAGCA 57.480 42.857 0.00 0.00 34.70 4.26
1207 1660 3.001330 CCAATCCTACGAATCAAACGAGC 59.999 47.826 0.00 0.00 34.70 5.03
1208 1661 3.001330 GCCAATCCTACGAATCAAACGAG 59.999 47.826 0.00 0.00 34.70 4.18
1209 1662 2.933906 GCCAATCCTACGAATCAAACGA 59.066 45.455 0.00 0.00 34.70 3.85
1210 1663 2.675844 TGCCAATCCTACGAATCAAACG 59.324 45.455 0.00 0.00 0.00 3.60
1211 1664 4.848757 GATGCCAATCCTACGAATCAAAC 58.151 43.478 0.00 0.00 0.00 2.93
1224 1677 6.283694 GGAAAAATTCCTAAGGATGCCAATC 58.716 40.000 1.86 0.00 46.57 2.67
1225 1678 6.239217 GGAAAAATTCCTAAGGATGCCAAT 57.761 37.500 1.86 0.00 46.57 3.16
1226 1679 5.675684 GGAAAAATTCCTAAGGATGCCAA 57.324 39.130 1.86 0.00 46.57 4.52
1278 1731 7.929941 AGAGGTTTGAGTAGATGGAAAATTC 57.070 36.000 0.00 0.00 0.00 2.17
1279 1732 8.579863 CAAAGAGGTTTGAGTAGATGGAAAATT 58.420 33.333 0.00 0.00 45.22 1.82
1280 1733 7.725844 ACAAAGAGGTTTGAGTAGATGGAAAAT 59.274 33.333 4.91 0.00 45.22 1.82
1281 1734 7.060421 ACAAAGAGGTTTGAGTAGATGGAAAA 58.940 34.615 4.91 0.00 45.22 2.29
1282 1735 6.601332 ACAAAGAGGTTTGAGTAGATGGAAA 58.399 36.000 4.91 0.00 45.22 3.13
1283 1736 6.187727 ACAAAGAGGTTTGAGTAGATGGAA 57.812 37.500 4.91 0.00 45.22 3.53
1284 1737 5.825593 ACAAAGAGGTTTGAGTAGATGGA 57.174 39.130 4.91 0.00 45.22 3.41
1285 1738 6.936279 TCTACAAAGAGGTTTGAGTAGATGG 58.064 40.000 4.91 0.00 45.22 3.51
1286 1739 9.442047 AATTCTACAAAGAGGTTTGAGTAGATG 57.558 33.333 4.91 0.00 45.22 2.90
1287 1740 9.660180 GAATTCTACAAAGAGGTTTGAGTAGAT 57.340 33.333 4.91 0.00 45.22 1.98
1288 1741 8.095169 GGAATTCTACAAAGAGGTTTGAGTAGA 58.905 37.037 5.23 0.00 45.22 2.59
1289 1742 8.097662 AGGAATTCTACAAAGAGGTTTGAGTAG 58.902 37.037 5.23 0.00 45.22 2.57
1290 1743 7.974504 AGGAATTCTACAAAGAGGTTTGAGTA 58.025 34.615 5.23 0.00 45.22 2.59
1291 1744 6.842676 AGGAATTCTACAAAGAGGTTTGAGT 58.157 36.000 5.23 0.00 45.22 3.41
1292 1745 7.751768 AAGGAATTCTACAAAGAGGTTTGAG 57.248 36.000 5.23 0.00 45.22 3.02
1293 1746 7.559897 ACAAAGGAATTCTACAAAGAGGTTTGA 59.440 33.333 5.23 0.00 45.22 2.69
1295 1748 7.898014 ACAAAGGAATTCTACAAAGAGGTTT 57.102 32.000 5.23 0.00 31.96 3.27
1296 1749 7.898014 AACAAAGGAATTCTACAAAGAGGTT 57.102 32.000 5.23 0.00 31.96 3.50
1297 1750 7.898014 AAACAAAGGAATTCTACAAAGAGGT 57.102 32.000 5.23 0.00 31.96 3.85
1298 1751 9.249457 GAAAAACAAAGGAATTCTACAAAGAGG 57.751 33.333 5.23 0.00 31.96 3.69
1299 1752 9.249457 GGAAAAACAAAGGAATTCTACAAAGAG 57.751 33.333 5.23 0.00 31.96 2.85
1300 1753 8.201464 GGGAAAAACAAAGGAATTCTACAAAGA 58.799 33.333 5.23 0.00 0.00 2.52
1301 1754 7.169140 CGGGAAAAACAAAGGAATTCTACAAAG 59.831 37.037 5.23 0.00 0.00 2.77
1302 1755 6.981559 CGGGAAAAACAAAGGAATTCTACAAA 59.018 34.615 5.23 0.00 0.00 2.83
1303 1756 6.508777 CGGGAAAAACAAAGGAATTCTACAA 58.491 36.000 5.23 0.00 0.00 2.41
1304 1757 5.508320 GCGGGAAAAACAAAGGAATTCTACA 60.508 40.000 5.23 0.00 0.00 2.74
1305 1758 4.921515 GCGGGAAAAACAAAGGAATTCTAC 59.078 41.667 5.23 0.00 0.00 2.59
1306 1759 4.320641 CGCGGGAAAAACAAAGGAATTCTA 60.321 41.667 5.23 0.00 0.00 2.10
1307 1760 3.552068 CGCGGGAAAAACAAAGGAATTCT 60.552 43.478 5.23 0.00 0.00 2.40
1308 1761 2.729360 CGCGGGAAAAACAAAGGAATTC 59.271 45.455 0.00 0.00 0.00 2.17
1309 1762 2.749776 CGCGGGAAAAACAAAGGAATT 58.250 42.857 0.00 0.00 0.00 2.17
1310 1763 1.604438 GCGCGGGAAAAACAAAGGAAT 60.604 47.619 8.83 0.00 0.00 3.01
1311 1764 0.249114 GCGCGGGAAAAACAAAGGAA 60.249 50.000 8.83 0.00 0.00 3.36
1312 1765 1.104577 AGCGCGGGAAAAACAAAGGA 61.105 50.000 8.83 0.00 0.00 3.36
1313 1766 0.594110 TAGCGCGGGAAAAACAAAGG 59.406 50.000 8.83 0.00 0.00 3.11
1314 1767 2.095466 TGATAGCGCGGGAAAAACAAAG 60.095 45.455 8.83 0.00 0.00 2.77
1315 1768 1.880675 TGATAGCGCGGGAAAAACAAA 59.119 42.857 8.83 0.00 0.00 2.83
1316 1769 1.524848 TGATAGCGCGGGAAAAACAA 58.475 45.000 8.83 0.00 0.00 2.83
1317 1770 1.524848 TTGATAGCGCGGGAAAAACA 58.475 45.000 8.83 0.00 0.00 2.83
1318 1771 2.622546 TTTGATAGCGCGGGAAAAAC 57.377 45.000 8.83 0.00 0.00 2.43
1319 1772 4.966965 TTATTTGATAGCGCGGGAAAAA 57.033 36.364 8.83 1.01 0.00 1.94
1320 1773 4.819630 AGATTATTTGATAGCGCGGGAAAA 59.180 37.500 8.83 2.59 0.00 2.29
1321 1774 4.385825 AGATTATTTGATAGCGCGGGAAA 58.614 39.130 8.83 0.17 0.00 3.13
1322 1775 4.002906 AGATTATTTGATAGCGCGGGAA 57.997 40.909 8.83 0.00 0.00 3.97
1323 1776 3.678056 AGATTATTTGATAGCGCGGGA 57.322 42.857 8.83 0.00 0.00 5.14
1324 1777 4.213270 TGAAAGATTATTTGATAGCGCGGG 59.787 41.667 8.83 0.00 0.00 6.13
1325 1778 5.342806 TGAAAGATTATTTGATAGCGCGG 57.657 39.130 8.83 0.00 0.00 6.46
1326 1779 7.587392 TGATTTGAAAGATTATTTGATAGCGCG 59.413 33.333 0.00 0.00 0.00 6.86
1327 1780 8.786937 TGATTTGAAAGATTATTTGATAGCGC 57.213 30.769 0.00 0.00 0.00 5.92
1342 1795 9.224267 CCCATAGTATCCTACATGATTTGAAAG 57.776 37.037 0.00 0.00 0.00 2.62
1343 1796 8.944138 TCCCATAGTATCCTACATGATTTGAAA 58.056 33.333 0.00 0.00 0.00 2.69
1344 1797 8.375506 GTCCCATAGTATCCTACATGATTTGAA 58.624 37.037 0.00 0.00 0.00 2.69
1345 1798 7.512402 TGTCCCATAGTATCCTACATGATTTGA 59.488 37.037 0.00 0.00 0.00 2.69
1346 1799 7.679783 TGTCCCATAGTATCCTACATGATTTG 58.320 38.462 0.00 0.00 0.00 2.32
1347 1800 7.872061 TGTCCCATAGTATCCTACATGATTT 57.128 36.000 0.00 0.00 0.00 2.17
1348 1801 7.459125 ACATGTCCCATAGTATCCTACATGATT 59.541 37.037 22.86 8.90 36.78 2.57
1349 1802 6.962311 ACATGTCCCATAGTATCCTACATGAT 59.038 38.462 22.86 12.05 36.78 2.45
1350 1803 6.322931 ACATGTCCCATAGTATCCTACATGA 58.677 40.000 22.86 0.00 36.78 3.07
1351 1804 6.211384 TGACATGTCCCATAGTATCCTACATG 59.789 42.308 22.85 18.23 38.55 3.21
1352 1805 6.322931 TGACATGTCCCATAGTATCCTACAT 58.677 40.000 22.85 0.00 0.00 2.29
1353 1806 5.711698 TGACATGTCCCATAGTATCCTACA 58.288 41.667 22.85 0.00 0.00 2.74
1354 1807 6.127310 GGATGACATGTCCCATAGTATCCTAC 60.127 46.154 22.85 2.12 31.25 3.18
1355 1808 5.958380 GGATGACATGTCCCATAGTATCCTA 59.042 44.000 22.85 0.00 31.25 2.94
1356 1809 4.780021 GGATGACATGTCCCATAGTATCCT 59.220 45.833 22.85 0.00 31.25 3.24
1357 1810 4.780021 AGGATGACATGTCCCATAGTATCC 59.220 45.833 22.85 22.65 36.36 2.59
1358 1811 7.667575 ATAGGATGACATGTCCCATAGTATC 57.332 40.000 22.85 15.65 36.36 2.24
1359 1812 7.126421 GGAATAGGATGACATGTCCCATAGTAT 59.874 40.741 22.85 7.80 36.36 2.12
1360 1813 6.440647 GGAATAGGATGACATGTCCCATAGTA 59.559 42.308 22.85 6.81 36.36 1.82
1361 1814 5.249393 GGAATAGGATGACATGTCCCATAGT 59.751 44.000 22.85 14.87 36.36 2.12
1362 1815 5.486775 AGGAATAGGATGACATGTCCCATAG 59.513 44.000 22.85 0.00 36.36 2.23
1363 1816 5.249163 CAGGAATAGGATGACATGTCCCATA 59.751 44.000 22.85 15.88 36.36 2.74
1364 1817 4.042560 CAGGAATAGGATGACATGTCCCAT 59.957 45.833 22.85 11.44 36.36 4.00
1365 1818 3.392285 CAGGAATAGGATGACATGTCCCA 59.608 47.826 22.85 6.54 36.36 4.37
1366 1819 3.808618 GCAGGAATAGGATGACATGTCCC 60.809 52.174 22.85 17.01 36.36 4.46
1367 1820 3.181451 TGCAGGAATAGGATGACATGTCC 60.181 47.826 22.85 8.69 35.94 4.02
1368 1821 4.077300 TGCAGGAATAGGATGACATGTC 57.923 45.455 19.27 19.27 0.00 3.06
1369 1822 4.719026 ATGCAGGAATAGGATGACATGT 57.281 40.909 0.00 0.00 0.00 3.21
1370 1823 6.401047 AAAATGCAGGAATAGGATGACATG 57.599 37.500 0.00 0.00 0.00 3.21
1395 1848 8.686334 GCAGGATTGTCAAAATAAAGGAATAGA 58.314 33.333 0.00 0.00 0.00 1.98
1396 1849 7.645340 CGCAGGATTGTCAAAATAAAGGAATAG 59.355 37.037 0.00 0.00 0.00 1.73
1397 1850 7.338196 TCGCAGGATTGTCAAAATAAAGGAATA 59.662 33.333 0.00 0.00 0.00 1.75
1398 1851 6.152661 TCGCAGGATTGTCAAAATAAAGGAAT 59.847 34.615 0.00 0.00 0.00 3.01
1399 1852 5.475220 TCGCAGGATTGTCAAAATAAAGGAA 59.525 36.000 0.00 0.00 0.00 3.36
1400 1853 5.007034 TCGCAGGATTGTCAAAATAAAGGA 58.993 37.500 0.00 0.00 0.00 3.36
1401 1854 5.309323 TCGCAGGATTGTCAAAATAAAGG 57.691 39.130 0.00 0.00 0.00 3.11
1402 1855 7.028962 TGATTCGCAGGATTGTCAAAATAAAG 58.971 34.615 0.00 0.00 0.00 1.85
1403 1856 6.918626 TGATTCGCAGGATTGTCAAAATAAA 58.081 32.000 0.00 0.00 0.00 1.40
1404 1857 6.507958 TGATTCGCAGGATTGTCAAAATAA 57.492 33.333 0.00 0.00 0.00 1.40
1405 1858 6.507958 TTGATTCGCAGGATTGTCAAAATA 57.492 33.333 0.00 0.00 0.00 1.40
1406 1859 5.389859 TTGATTCGCAGGATTGTCAAAAT 57.610 34.783 0.00 0.00 0.00 1.82
1407 1860 4.844998 TTGATTCGCAGGATTGTCAAAA 57.155 36.364 0.00 0.00 0.00 2.44
1408 1861 4.844998 TTTGATTCGCAGGATTGTCAAA 57.155 36.364 0.00 0.00 34.35 2.69
1409 1862 4.844998 TTTTGATTCGCAGGATTGTCAA 57.155 36.364 0.00 0.00 0.00 3.18
1410 1863 4.321156 CCTTTTTGATTCGCAGGATTGTCA 60.321 41.667 0.00 0.00 0.00 3.58
1411 1864 4.168760 CCTTTTTGATTCGCAGGATTGTC 58.831 43.478 0.00 0.00 0.00 3.18
1412 1865 3.614870 GCCTTTTTGATTCGCAGGATTGT 60.615 43.478 0.00 0.00 0.00 2.71
1413 1866 2.925563 GCCTTTTTGATTCGCAGGATTG 59.074 45.455 0.00 0.00 0.00 2.67
1414 1867 2.094026 GGCCTTTTTGATTCGCAGGATT 60.094 45.455 0.00 0.00 0.00 3.01
1415 1868 1.478105 GGCCTTTTTGATTCGCAGGAT 59.522 47.619 0.00 0.00 0.00 3.24
1416 1869 0.887933 GGCCTTTTTGATTCGCAGGA 59.112 50.000 0.00 0.00 0.00 3.86
1417 1870 0.108662 GGGCCTTTTTGATTCGCAGG 60.109 55.000 0.84 0.00 0.00 4.85
1418 1871 0.890683 AGGGCCTTTTTGATTCGCAG 59.109 50.000 0.00 0.00 0.00 5.18
1419 1872 0.602562 CAGGGCCTTTTTGATTCGCA 59.397 50.000 1.32 0.00 0.00 5.10
1420 1873 0.887933 TCAGGGCCTTTTTGATTCGC 59.112 50.000 1.32 0.00 0.00 4.70
1421 1874 3.056607 ACATTCAGGGCCTTTTTGATTCG 60.057 43.478 1.32 0.00 0.00 3.34
1422 1875 4.248058 CACATTCAGGGCCTTTTTGATTC 58.752 43.478 1.32 0.00 0.00 2.52
1423 1876 3.008266 CCACATTCAGGGCCTTTTTGATT 59.992 43.478 1.32 0.00 0.00 2.57
1424 1877 2.568509 CCACATTCAGGGCCTTTTTGAT 59.431 45.455 1.32 0.00 0.00 2.57
1425 1878 1.969923 CCACATTCAGGGCCTTTTTGA 59.030 47.619 1.32 0.00 0.00 2.69
1426 1879 1.608801 GCCACATTCAGGGCCTTTTTG 60.609 52.381 1.32 3.83 44.53 2.44
1427 1880 0.686789 GCCACATTCAGGGCCTTTTT 59.313 50.000 1.32 0.00 44.53 1.94
1428 1881 2.365410 GCCACATTCAGGGCCTTTT 58.635 52.632 1.32 0.00 44.53 2.27
1429 1882 4.118584 GCCACATTCAGGGCCTTT 57.881 55.556 1.32 0.00 44.53 3.11
1434 1887 2.224475 CCTCTGATAGCCACATTCAGGG 60.224 54.545 0.00 0.00 37.66 4.45
1435 1888 2.702478 TCCTCTGATAGCCACATTCAGG 59.298 50.000 0.00 0.00 37.93 3.86
1436 1889 3.387374 ACTCCTCTGATAGCCACATTCAG 59.613 47.826 0.00 0.00 38.56 3.02
1437 1890 3.378512 ACTCCTCTGATAGCCACATTCA 58.621 45.455 0.00 0.00 0.00 2.57
1438 1891 4.414337 AACTCCTCTGATAGCCACATTC 57.586 45.455 0.00 0.00 0.00 2.67
1439 1892 5.957771 TTAACTCCTCTGATAGCCACATT 57.042 39.130 0.00 0.00 0.00 2.71
1440 1893 6.294473 CAATTAACTCCTCTGATAGCCACAT 58.706 40.000 0.00 0.00 0.00 3.21
1441 1894 5.674525 CAATTAACTCCTCTGATAGCCACA 58.325 41.667 0.00 0.00 0.00 4.17
1442 1895 4.513318 GCAATTAACTCCTCTGATAGCCAC 59.487 45.833 0.00 0.00 0.00 5.01
1443 1896 4.164030 TGCAATTAACTCCTCTGATAGCCA 59.836 41.667 0.00 0.00 0.00 4.75
1444 1897 4.513318 GTGCAATTAACTCCTCTGATAGCC 59.487 45.833 0.00 0.00 0.00 3.93
1445 1898 5.118990 TGTGCAATTAACTCCTCTGATAGC 58.881 41.667 0.00 0.00 0.00 2.97
1446 1899 6.577103 TCTGTGCAATTAACTCCTCTGATAG 58.423 40.000 0.00 0.00 0.00 2.08
1447 1900 6.544928 TCTGTGCAATTAACTCCTCTGATA 57.455 37.500 0.00 0.00 0.00 2.15
1448 1901 5.426689 TCTGTGCAATTAACTCCTCTGAT 57.573 39.130 0.00 0.00 0.00 2.90
1449 1902 4.890158 TCTGTGCAATTAACTCCTCTGA 57.110 40.909 0.00 0.00 0.00 3.27
1450 1903 4.999950 ACTTCTGTGCAATTAACTCCTCTG 59.000 41.667 0.00 0.00 0.00 3.35
1514 1967 5.804639 TGGTACTGACATGCAAAGATTAGT 58.195 37.500 0.00 0.00 0.00 2.24
2074 2562 3.353557 GACAAACCCTAATCCCCAACTC 58.646 50.000 0.00 0.00 0.00 3.01
2525 3015 4.933505 TCATCACTGCAACCAAATTCAA 57.066 36.364 0.00 0.00 0.00 2.69
2546 3036 8.088463 TCATATGCATTAAATCCTTGGGTTTT 57.912 30.769 3.54 0.02 0.00 2.43
2704 3194 0.999712 ATTCAGTAACAGGGGGTGGG 59.000 55.000 0.00 0.00 0.00 4.61
2722 3212 4.325028 TTGACATTGCTGCAACTCAAAT 57.675 36.364 24.35 6.50 0.00 2.32
2907 3397 2.099756 ACTGCTTTCAACTTGGCTGTTC 59.900 45.455 0.00 0.00 34.22 3.18
3258 3763 4.353383 GACCTAGTTGTTGGTCCTCTTT 57.647 45.455 0.00 0.00 45.03 2.52
3328 3836 3.517500 ACCCCTTCTCTTCTTCATCTGAC 59.482 47.826 0.00 0.00 0.00 3.51
3353 3861 3.552478 CCATCATCATCACTCTCCGTCAG 60.552 52.174 0.00 0.00 0.00 3.51
3357 3865 3.465742 AACCATCATCATCACTCTCCG 57.534 47.619 0.00 0.00 0.00 4.63
3412 3920 4.332828 GCCTTTTCTTTGCCCTACTCTTA 58.667 43.478 0.00 0.00 0.00 2.10
4170 4678 5.104374 CACCTGCATAATCAACATTTCCAC 58.896 41.667 0.00 0.00 0.00 4.02
4248 4756 9.224267 GATATATGTTGTTGTTGCCATCTCTAT 57.776 33.333 0.00 0.00 0.00 1.98
4448 4956 5.010282 CACCAATGAAACCCTTAGCTACTT 58.990 41.667 0.00 0.00 0.00 2.24
4853 5365 3.950397 TCCCATCACACATTGTCCTTAC 58.050 45.455 0.00 0.00 0.00 2.34
4876 5388 5.396772 CCACCTCACCATCTGCTTATCTTTA 60.397 44.000 0.00 0.00 0.00 1.85
5037 5550 1.294138 GCATGTGTTTGCTGCCCAT 59.706 52.632 0.00 0.00 39.57 4.00
5870 6508 2.930109 ACTTGGCTCCTCTTCCTCTA 57.070 50.000 0.00 0.00 0.00 2.43
6050 6772 3.071167 GGTACTCCACCTGAAGTTCAACT 59.929 47.826 7.06 0.00 44.79 3.16
6357 7081 2.217750 CGACATCTCTCTCTCCATCGT 58.782 52.381 0.00 0.00 0.00 3.73
6830 7556 3.245016 TGCCATCATCTTCACTTGGAGTT 60.245 43.478 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.