Multiple sequence alignment - TraesCS2D01G515000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G515000 chr2D 100.000 2261 0 0 1 2261 606636251 606638511 0.000000e+00 4176.0
1 TraesCS2D01G515000 chr2D 88.259 247 23 4 1000 1246 606625608 606625848 7.900000e-75 291.0
2 TraesCS2D01G515000 chr2D 87.778 180 22 0 994 1173 606514347 606514526 6.330000e-51 211.0
3 TraesCS2D01G515000 chr2B 85.294 1360 91 47 406 1684 738175396 738176727 0.000000e+00 1303.0
4 TraesCS2D01G515000 chr2B 89.514 391 24 8 1843 2228 738176783 738177161 1.570000e-131 479.0
5 TraesCS2D01G515000 chr2B 87.854 247 24 3 1000 1246 737870950 737871190 3.680000e-73 285.0
6 TraesCS2D01G515000 chr2B 83.482 224 34 3 994 1214 737635269 737635492 2.940000e-49 206.0
7 TraesCS2D01G515000 chr2B 82.805 221 35 3 994 1211 737686245 737686465 6.370000e-46 195.0
8 TraesCS2D01G515000 chr2A 90.897 780 38 16 720 1476 738202313 738203082 0.000000e+00 1016.0
9 TraesCS2D01G515000 chr2A 86.927 436 30 9 1806 2220 376996632 376996203 4.400000e-127 464.0
10 TraesCS2D01G515000 chr2A 92.230 296 17 4 1933 2228 738203339 738203628 4.490000e-112 414.0
11 TraesCS2D01G515000 chr2A 88.259 247 26 3 1000 1246 738143963 738144206 2.200000e-75 292.0
12 TraesCS2D01G515000 chr2A 87.097 217 17 7 1475 1682 738203110 738203324 3.750000e-58 235.0
13 TraesCS2D01G515000 chr2A 86.111 180 25 0 994 1173 738040329 738040508 6.370000e-46 195.0
14 TraesCS2D01G515000 chr2A 92.035 113 8 1 617 728 738192783 738192895 8.360000e-35 158.0
15 TraesCS2D01G515000 chr2A 100.000 31 0 0 2231 2261 507377776 507377806 8.720000e-05 58.4
16 TraesCS2D01G515000 chr5A 85.294 442 32 13 1806 2220 306999132 306998697 2.080000e-115 425.0
17 TraesCS2D01G515000 chr5A 82.938 211 30 5 155 364 563328997 563329202 3.830000e-43 185.0
18 TraesCS2D01G515000 chr5A 92.241 116 8 1 1682 1796 536684855 536684970 1.800000e-36 163.0
19 TraesCS2D01G515000 chr3D 87.215 219 24 3 156 374 47528324 47528110 1.730000e-61 246.0
20 TraesCS2D01G515000 chr3B 90.184 163 12 3 213 374 74413986 74413827 2.280000e-50 209.0
21 TraesCS2D01G515000 chr3B 94.737 38 1 1 2224 2261 707250187 707250151 8.720000e-05 58.4
22 TraesCS2D01G515000 chr5D 84.689 209 27 3 166 374 397198112 397198315 1.060000e-48 204.0
23 TraesCS2D01G515000 chr5D 82.727 220 34 3 157 376 351395815 351395600 2.290000e-45 193.0
24 TraesCS2D01G515000 chr5D 82.949 217 30 3 158 374 397224534 397224743 2.960000e-44 189.0
25 TraesCS2D01G515000 chr5D 90.244 123 10 2 1680 1801 386987500 386987379 2.320000e-35 159.0
26 TraesCS2D01G515000 chr5D 100.000 31 0 0 2231 2261 178492942 178492972 8.720000e-05 58.4
27 TraesCS2D01G515000 chr3A 83.105 219 31 5 156 374 475281319 475281107 6.370000e-46 195.0
28 TraesCS2D01G515000 chr7D 83.173 208 27 6 168 374 591004247 591004047 1.380000e-42 183.0
29 TraesCS2D01G515000 chr7D 97.059 34 0 1 2227 2259 530362454 530362487 3.140000e-04 56.5
30 TraesCS2D01G515000 chr7A 82.326 215 32 6 162 374 1881217 1881427 4.960000e-42 182.0
31 TraesCS2D01G515000 chr6A 93.220 118 7 1 1680 1796 447643846 447643729 2.990000e-39 172.0
32 TraesCS2D01G515000 chr6A 100.000 31 0 0 2231 2261 35946508 35946538 8.720000e-05 58.4
33 TraesCS2D01G515000 chr4A 93.220 118 7 1 1681 1797 541364243 541364360 2.990000e-39 172.0
34 TraesCS2D01G515000 chr4A 97.143 35 0 1 2226 2260 659680888 659680921 8.720000e-05 58.4
35 TraesCS2D01G515000 chr5B 90.000 130 11 2 1679 1807 227837197 227837325 1.390000e-37 167.0
36 TraesCS2D01G515000 chr5B 90.984 122 9 2 1676 1796 595288580 595288700 1.800000e-36 163.0
37 TraesCS2D01G515000 chr6B 92.308 117 8 1 1681 1796 438623455 438623339 5.000000e-37 165.0
38 TraesCS2D01G515000 chr1A 91.667 120 9 1 1679 1797 587847757 587847876 5.000000e-37 165.0
39 TraesCS2D01G515000 chr7B 86.301 146 12 7 1681 1820 614295109 614294966 3.890000e-33 152.0
40 TraesCS2D01G515000 chr7B 100.000 30 0 0 2232 2261 559157768 559157797 3.140000e-04 56.5
41 TraesCS2D01G515000 chr1D 100.000 30 0 0 2232 2261 415413057 415413028 3.140000e-04 56.5
42 TraesCS2D01G515000 chr1D 94.286 35 2 0 2225 2259 381322296 381322330 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G515000 chr2D 606636251 606638511 2260 False 4176 4176 100.000000 1 2261 1 chr2D.!!$F3 2260
1 TraesCS2D01G515000 chr2B 738175396 738177161 1765 False 891 1303 87.404000 406 2228 2 chr2B.!!$F4 1822
2 TraesCS2D01G515000 chr2A 738202313 738203628 1315 False 555 1016 90.074667 720 2228 3 chr2A.!!$F5 1508

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
167 168 0.10104 TGGCCGTTATACTCGTTCCG 59.899 55.0 0.0 0.0 0.0 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1816 1927 0.322277 AGAATGGTGGTGCAGCTGAG 60.322 55.0 20.43 0.0 32.61 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.837896 AAAACTTCTTTACCTCTGCTGC 57.162 40.909 0.00 0.00 0.00 5.25
35 36 2.481289 ACTTCTTTACCTCTGCTGCC 57.519 50.000 0.00 0.00 0.00 4.85
36 37 1.003696 ACTTCTTTACCTCTGCTGCCC 59.996 52.381 0.00 0.00 0.00 5.36
37 38 1.280421 CTTCTTTACCTCTGCTGCCCT 59.720 52.381 0.00 0.00 0.00 5.19
38 39 0.615331 TCTTTACCTCTGCTGCCCTG 59.385 55.000 0.00 0.00 0.00 4.45
39 40 1.002134 TTTACCTCTGCTGCCCTGC 60.002 57.895 0.00 0.00 0.00 4.85
40 41 1.778017 TTTACCTCTGCTGCCCTGCA 61.778 55.000 0.00 0.03 41.05 4.41
41 42 1.565390 TTACCTCTGCTGCCCTGCAT 61.565 55.000 0.00 0.00 42.48 3.96
42 43 2.261430 TACCTCTGCTGCCCTGCATG 62.261 60.000 0.00 0.00 42.48 4.06
43 44 3.518998 CTCTGCTGCCCTGCATGC 61.519 66.667 11.82 11.82 42.48 4.06
44 45 4.354162 TCTGCTGCCCTGCATGCA 62.354 61.111 21.29 21.29 42.48 3.96
45 46 3.147595 CTGCTGCCCTGCATGCAT 61.148 61.111 22.97 0.00 42.48 3.96
46 47 3.430565 CTGCTGCCCTGCATGCATG 62.431 63.158 22.97 22.70 42.48 4.06
63 64 2.412937 GCACTTGCACCCACACAC 59.587 61.111 0.00 0.00 41.59 3.82
64 65 2.413963 GCACTTGCACCCACACACA 61.414 57.895 0.00 0.00 41.59 3.72
65 66 1.433064 CACTTGCACCCACACACAC 59.567 57.895 0.00 0.00 0.00 3.82
66 67 2.112198 ACTTGCACCCACACACACG 61.112 57.895 0.00 0.00 0.00 4.49
67 68 2.045829 TTGCACCCACACACACGT 60.046 55.556 0.00 0.00 0.00 4.49
76 77 2.821810 CACACACGTGCACCACCA 60.822 61.111 17.22 0.00 36.06 4.17
77 78 2.822255 ACACACGTGCACCACCAC 60.822 61.111 17.22 0.00 0.00 4.16
78 79 2.821810 CACACGTGCACCACCACA 60.822 61.111 17.22 0.00 35.47 4.17
79 80 2.822255 ACACGTGCACCACCACAC 60.822 61.111 17.22 0.00 35.47 3.82
80 81 2.821810 CACGTGCACCACCACACA 60.822 61.111 12.15 0.00 36.57 3.72
81 82 2.186160 CACGTGCACCACCACACAT 61.186 57.895 12.15 0.00 36.57 3.21
82 83 2.186160 ACGTGCACCACCACACATG 61.186 57.895 12.15 0.00 36.57 3.21
83 84 2.336088 GTGCACCACCACACATGC 59.664 61.111 5.22 0.00 36.77 4.06
84 85 2.123982 TGCACCACCACACATGCA 60.124 55.556 0.00 0.00 45.45 3.96
85 86 1.531128 TGCACCACCACACATGCAT 60.531 52.632 0.00 0.00 42.92 3.96
86 87 1.213537 GCACCACCACACATGCATC 59.786 57.895 0.00 0.00 38.00 3.91
87 88 1.885157 CACCACCACACATGCATCC 59.115 57.895 0.00 0.00 0.00 3.51
88 89 0.894642 CACCACCACACATGCATCCA 60.895 55.000 0.00 0.00 0.00 3.41
89 90 0.895100 ACCACCACACATGCATCCAC 60.895 55.000 0.00 0.00 0.00 4.02
90 91 0.894642 CCACCACACATGCATCCACA 60.895 55.000 0.00 0.00 0.00 4.17
91 92 0.960286 CACCACACATGCATCCACAA 59.040 50.000 0.00 0.00 0.00 3.33
92 93 1.068125 CACCACACATGCATCCACAAG 60.068 52.381 0.00 0.00 0.00 3.16
93 94 1.202915 ACCACACATGCATCCACAAGA 60.203 47.619 0.00 0.00 0.00 3.02
94 95 1.887854 CCACACATGCATCCACAAGAA 59.112 47.619 0.00 0.00 0.00 2.52
95 96 2.296752 CCACACATGCATCCACAAGAAA 59.703 45.455 0.00 0.00 0.00 2.52
96 97 3.243805 CCACACATGCATCCACAAGAAAA 60.244 43.478 0.00 0.00 0.00 2.29
97 98 3.737266 CACACATGCATCCACAAGAAAAC 59.263 43.478 0.00 0.00 0.00 2.43
98 99 2.981805 CACATGCATCCACAAGAAAACG 59.018 45.455 0.00 0.00 0.00 3.60
99 100 2.030007 ACATGCATCCACAAGAAAACGG 60.030 45.455 0.00 0.00 0.00 4.44
100 101 0.313672 TGCATCCACAAGAAAACGGC 59.686 50.000 0.00 0.00 0.00 5.68
101 102 0.313672 GCATCCACAAGAAAACGGCA 59.686 50.000 0.00 0.00 0.00 5.69
102 103 1.269517 GCATCCACAAGAAAACGGCAA 60.270 47.619 0.00 0.00 0.00 4.52
103 104 2.393764 CATCCACAAGAAAACGGCAAC 58.606 47.619 0.00 0.00 0.00 4.17
116 117 3.233355 GGCAACGTCAGATGGAGTT 57.767 52.632 0.00 0.00 0.00 3.01
117 118 1.079503 GGCAACGTCAGATGGAGTTC 58.920 55.000 0.00 0.00 0.00 3.01
118 119 1.608025 GGCAACGTCAGATGGAGTTCA 60.608 52.381 0.00 0.00 0.00 3.18
119 120 1.728971 GCAACGTCAGATGGAGTTCAG 59.271 52.381 0.00 0.00 0.00 3.02
120 121 2.341257 CAACGTCAGATGGAGTTCAGG 58.659 52.381 0.00 0.00 0.00 3.86
121 122 1.633774 ACGTCAGATGGAGTTCAGGT 58.366 50.000 0.00 0.00 0.00 4.00
122 123 1.546476 ACGTCAGATGGAGTTCAGGTC 59.454 52.381 0.00 0.00 0.00 3.85
123 124 1.134965 CGTCAGATGGAGTTCAGGTCC 60.135 57.143 0.00 0.00 34.31 4.46
147 148 1.275291 ACCTACAATGGTGAGGACACG 59.725 52.381 5.32 0.00 46.77 4.49
148 149 1.275291 CCTACAATGGTGAGGACACGT 59.725 52.381 0.00 0.00 46.77 4.49
149 150 2.337583 CTACAATGGTGAGGACACGTG 58.662 52.381 15.48 15.48 46.77 4.49
150 151 0.250295 ACAATGGTGAGGACACGTGG 60.250 55.000 21.57 1.66 46.77 4.94
151 152 1.302511 AATGGTGAGGACACGTGGC 60.303 57.895 21.57 18.48 46.77 5.01
152 153 2.748058 AATGGTGAGGACACGTGGCC 62.748 60.000 34.12 34.12 46.77 5.36
164 165 3.334078 CGTGGCCGTTATACTCGTT 57.666 52.632 0.00 0.00 0.00 3.85
165 166 1.194495 CGTGGCCGTTATACTCGTTC 58.806 55.000 0.00 0.00 0.00 3.95
166 167 1.564207 GTGGCCGTTATACTCGTTCC 58.436 55.000 0.00 0.00 0.00 3.62
167 168 0.101040 TGGCCGTTATACTCGTTCCG 59.899 55.000 0.00 0.00 0.00 4.30
168 169 0.101219 GGCCGTTATACTCGTTCCGT 59.899 55.000 0.00 0.00 0.00 4.69
169 170 1.469767 GGCCGTTATACTCGTTCCGTT 60.470 52.381 0.00 0.00 0.00 4.44
170 171 2.262211 GCCGTTATACTCGTTCCGTTT 58.738 47.619 0.00 0.00 0.00 3.60
171 172 2.279921 GCCGTTATACTCGTTCCGTTTC 59.720 50.000 0.00 0.00 0.00 2.78
172 173 3.500982 CCGTTATACTCGTTCCGTTTCA 58.499 45.455 0.00 0.00 0.00 2.69
173 174 3.919804 CCGTTATACTCGTTCCGTTTCAA 59.080 43.478 0.00 0.00 0.00 2.69
174 175 4.385447 CCGTTATACTCGTTCCGTTTCAAA 59.615 41.667 0.00 0.00 0.00 2.69
175 176 5.107530 CCGTTATACTCGTTCCGTTTCAAAA 60.108 40.000 0.00 0.00 0.00 2.44
176 177 6.401367 CCGTTATACTCGTTCCGTTTCAAAAT 60.401 38.462 0.00 0.00 0.00 1.82
177 178 6.460452 CGTTATACTCGTTCCGTTTCAAAATG 59.540 38.462 0.00 0.00 0.00 2.32
178 179 5.934935 ATACTCGTTCCGTTTCAAAATGT 57.065 34.783 0.00 0.00 0.00 2.71
179 180 8.434661 GTTATACTCGTTCCGTTTCAAAATGTA 58.565 33.333 0.00 0.00 0.00 2.29
180 181 5.338614 ACTCGTTCCGTTTCAAAATGTAG 57.661 39.130 0.00 0.00 0.00 2.74
181 182 4.812626 ACTCGTTCCGTTTCAAAATGTAGT 59.187 37.500 0.00 0.00 0.00 2.73
182 183 5.085636 TCGTTCCGTTTCAAAATGTAGTG 57.914 39.130 0.00 0.00 0.00 2.74
183 184 3.662186 CGTTCCGTTTCAAAATGTAGTGC 59.338 43.478 0.00 0.00 0.00 4.40
184 185 3.529634 TCCGTTTCAAAATGTAGTGCG 57.470 42.857 0.00 0.00 0.00 5.34
185 186 2.873472 TCCGTTTCAAAATGTAGTGCGT 59.127 40.909 0.00 0.00 0.00 5.24
186 187 4.056740 TCCGTTTCAAAATGTAGTGCGTA 58.943 39.130 0.00 0.00 0.00 4.42
187 188 4.084433 TCCGTTTCAAAATGTAGTGCGTAC 60.084 41.667 0.00 0.00 0.00 3.67
188 189 4.318903 CCGTTTCAAAATGTAGTGCGTACA 60.319 41.667 6.38 1.52 45.93 2.90
189 190 4.838642 CGTTTCAAAATGTAGTGCGTACAG 59.161 41.667 6.38 0.00 45.06 2.74
190 191 5.332732 CGTTTCAAAATGTAGTGCGTACAGA 60.333 40.000 6.38 0.00 45.06 3.41
191 192 6.599437 GTTTCAAAATGTAGTGCGTACAGAT 58.401 36.000 6.38 0.00 45.06 2.90
192 193 6.795098 TTCAAAATGTAGTGCGTACAGATT 57.205 33.333 6.38 0.00 45.06 2.40
193 194 6.795098 TCAAAATGTAGTGCGTACAGATTT 57.205 33.333 6.38 6.00 45.06 2.17
194 195 7.197071 TCAAAATGTAGTGCGTACAGATTTT 57.803 32.000 6.38 11.10 45.06 1.82
195 196 7.644490 TCAAAATGTAGTGCGTACAGATTTTT 58.356 30.769 6.38 4.29 45.06 1.94
196 197 7.589587 TCAAAATGTAGTGCGTACAGATTTTTG 59.410 33.333 18.90 18.90 45.06 2.44
197 198 6.795098 AATGTAGTGCGTACAGATTTTTGA 57.205 33.333 6.38 0.00 45.06 2.69
198 199 6.795098 ATGTAGTGCGTACAGATTTTTGAA 57.205 33.333 6.38 0.00 45.06 2.69
199 200 6.606234 TGTAGTGCGTACAGATTTTTGAAA 57.394 33.333 6.38 0.00 36.67 2.69
200 201 7.017498 TGTAGTGCGTACAGATTTTTGAAAA 57.983 32.000 6.38 0.00 36.67 2.29
201 202 7.473366 TGTAGTGCGTACAGATTTTTGAAAAA 58.527 30.769 6.38 5.47 36.67 1.94
224 225 9.505995 AAAAATAATCAAGCTTTGCAAACTTTG 57.494 25.926 18.37 18.34 0.00 2.77
225 226 8.436046 AAATAATCAAGCTTTGCAAACTTTGA 57.564 26.923 24.54 24.54 0.00 2.69
226 227 8.611654 AATAATCAAGCTTTGCAAACTTTGAT 57.388 26.923 25.95 25.95 0.00 2.57
227 228 6.535274 AATCAAGCTTTGCAAACTTTGATC 57.465 33.333 28.78 9.38 0.00 2.92
228 229 5.008619 TCAAGCTTTGCAAACTTTGATCA 57.991 34.783 21.12 0.00 0.00 2.92
229 230 5.417811 TCAAGCTTTGCAAACTTTGATCAA 58.582 33.333 21.12 3.38 0.00 2.57
230 231 5.873712 TCAAGCTTTGCAAACTTTGATCAAA 59.126 32.000 19.45 19.45 0.00 2.69
231 232 6.539464 TCAAGCTTTGCAAACTTTGATCAAAT 59.461 30.769 20.76 4.90 0.00 2.32
232 233 6.930667 AGCTTTGCAAACTTTGATCAAATT 57.069 29.167 20.76 13.01 0.00 1.82
233 234 7.324354 AGCTTTGCAAACTTTGATCAAATTT 57.676 28.000 20.76 18.05 0.00 1.82
234 235 8.436046 AGCTTTGCAAACTTTGATCAAATTTA 57.564 26.923 20.76 4.94 0.00 1.40
235 236 9.059260 AGCTTTGCAAACTTTGATCAAATTTAT 57.941 25.926 20.76 9.81 0.00 1.40
361 362 6.734104 TTTTTCCCACAAACATGAACAAAG 57.266 33.333 0.00 0.00 0.00 2.77
362 363 5.413309 TTTCCCACAAACATGAACAAAGT 57.587 34.783 0.00 0.00 0.00 2.66
363 364 5.413309 TTCCCACAAACATGAACAAAGTT 57.587 34.783 0.00 0.00 0.00 2.66
364 365 5.413309 TCCCACAAACATGAACAAAGTTT 57.587 34.783 0.00 0.00 36.00 2.66
365 366 5.799213 TCCCACAAACATGAACAAAGTTTT 58.201 33.333 0.00 0.00 33.54 2.43
366 367 6.234177 TCCCACAAACATGAACAAAGTTTTT 58.766 32.000 0.00 0.00 33.54 1.94
367 368 6.148480 TCCCACAAACATGAACAAAGTTTTTG 59.852 34.615 0.00 0.00 33.54 2.44
368 369 5.794448 CCACAAACATGAACAAAGTTTTTGC 59.206 36.000 0.00 0.00 33.75 3.68
369 370 5.504065 CACAAACATGAACAAAGTTTTTGCG 59.496 36.000 0.00 0.00 33.54 4.85
370 371 4.856115 AACATGAACAAAGTTTTTGCGG 57.144 36.364 0.00 0.00 0.00 5.69
371 372 3.855858 ACATGAACAAAGTTTTTGCGGT 58.144 36.364 0.00 0.00 0.00 5.68
372 373 4.249661 ACATGAACAAAGTTTTTGCGGTT 58.750 34.783 0.00 0.00 0.00 4.44
373 374 4.693095 ACATGAACAAAGTTTTTGCGGTTT 59.307 33.333 0.00 0.00 0.00 3.27
374 375 5.180304 ACATGAACAAAGTTTTTGCGGTTTT 59.820 32.000 0.00 0.00 0.00 2.43
375 376 5.674933 TGAACAAAGTTTTTGCGGTTTTT 57.325 30.435 1.68 0.00 0.00 1.94
401 402 4.979204 GCATGTTGCACTGCATGT 57.021 50.000 19.68 0.00 44.26 3.21
402 403 3.204505 GCATGTTGCACTGCATGTT 57.795 47.368 19.68 0.00 44.26 2.71
403 404 0.787787 GCATGTTGCACTGCATGTTG 59.212 50.000 19.68 4.13 44.26 3.33
404 405 1.424403 CATGTTGCACTGCATGTTGG 58.576 50.000 4.10 0.00 38.76 3.77
412 413 2.679450 CACTGCATGTTGGGTTCAATG 58.321 47.619 0.00 0.00 35.10 2.82
415 416 1.270199 TGCATGTTGGGTTCAATGCAC 60.270 47.619 5.13 0.00 41.29 4.57
423 424 1.729131 GTTCAATGCACCGTTGGCG 60.729 57.895 0.00 0.00 31.92 5.69
465 466 6.109156 TGTGTAGGAGTTCAAGAGCATTTA 57.891 37.500 0.00 0.00 0.00 1.40
484 486 9.416794 AGCATTTAGTTCTAGATGTATCGATTG 57.583 33.333 1.71 0.00 0.00 2.67
485 487 9.197694 GCATTTAGTTCTAGATGTATCGATTGT 57.802 33.333 1.71 0.00 0.00 2.71
527 529 4.262335 CCGTAATTAATTAGGGGACGCTCT 60.262 45.833 28.13 0.00 41.95 4.09
565 567 8.964420 ACGAATTATACAATGTTTTGACCTTG 57.036 30.769 0.00 0.00 36.64 3.61
566 568 8.026607 ACGAATTATACAATGTTTTGACCTTGG 58.973 33.333 0.00 0.00 36.64 3.61
586 588 8.141909 ACCTTGGTTTTGAAAAATTCTACTAGC 58.858 33.333 0.00 0.00 0.00 3.42
587 589 8.141268 CCTTGGTTTTGAAAAATTCTACTAGCA 58.859 33.333 0.00 0.00 0.00 3.49
591 593 9.608617 GGTTTTGAAAAATTCTACTAGCACTAC 57.391 33.333 0.00 0.00 0.00 2.73
651 659 0.673956 GGAGACTTTTCCTGCCGACC 60.674 60.000 0.00 0.00 34.27 4.79
662 670 2.267681 CTGCCGACCGTCCTAGTCAC 62.268 65.000 0.00 0.00 33.70 3.67
687 695 2.663196 GTCCCACCTGACCGGAAG 59.337 66.667 9.46 4.99 36.31 3.46
707 715 1.369625 CCGTCACATCTTTACCCAGC 58.630 55.000 0.00 0.00 0.00 4.85
710 718 2.673368 CGTCACATCTTTACCCAGCTTC 59.327 50.000 0.00 0.00 0.00 3.86
743 751 4.796231 GCCACGTCGAGGCGTCAT 62.796 66.667 17.96 0.00 43.83 3.06
744 752 2.880879 CCACGTCGAGGCGTCATG 60.881 66.667 4.75 2.40 43.83 3.07
745 753 2.126463 CACGTCGAGGCGTCATGT 60.126 61.111 4.75 3.00 43.83 3.21
746 754 1.733041 CACGTCGAGGCGTCATGTT 60.733 57.895 4.75 0.00 43.83 2.71
747 755 1.733041 ACGTCGAGGCGTCATGTTG 60.733 57.895 4.75 0.00 41.71 3.33
748 756 2.778679 GTCGAGGCGTCATGTTGC 59.221 61.111 7.26 3.75 0.00 4.17
749 757 1.738099 GTCGAGGCGTCATGTTGCT 60.738 57.895 7.26 0.00 0.00 3.91
767 788 3.261580 TGCTCGTCACAATGTTATCCAG 58.738 45.455 0.00 0.00 0.00 3.86
768 789 3.262420 GCTCGTCACAATGTTATCCAGT 58.738 45.455 0.00 0.00 0.00 4.00
772 793 5.547465 TCGTCACAATGTTATCCAGTTCTT 58.453 37.500 0.00 0.00 0.00 2.52
790 811 0.534203 TTGCCAAGTTGTCGGTCCTC 60.534 55.000 1.45 0.00 0.00 3.71
791 812 1.070786 GCCAAGTTGTCGGTCCTCA 59.929 57.895 1.45 0.00 0.00 3.86
792 813 0.534203 GCCAAGTTGTCGGTCCTCAA 60.534 55.000 1.45 0.00 0.00 3.02
793 814 1.512926 CCAAGTTGTCGGTCCTCAAG 58.487 55.000 1.45 0.00 0.00 3.02
794 815 1.512926 CAAGTTGTCGGTCCTCAAGG 58.487 55.000 0.00 0.00 0.00 3.61
801 829 0.251653 TCGGTCCTCAAGGCACTACT 60.252 55.000 0.00 0.00 38.49 2.57
805 833 3.676324 CGGTCCTCAAGGCACTACTAAAG 60.676 52.174 0.00 0.00 38.49 1.85
934 968 4.895297 ACCATTCTGAACCAACACATTTCT 59.105 37.500 0.00 0.00 0.00 2.52
936 970 5.693104 CCATTCTGAACCAACACATTTCTTG 59.307 40.000 0.00 0.00 0.00 3.02
943 977 1.788308 CAACACATTTCTTGCTTGCCG 59.212 47.619 0.00 0.00 0.00 5.69
962 1000 3.563224 AGCAGCTGCACACCCAGA 61.563 61.111 38.24 0.00 45.16 3.86
973 1011 0.898789 ACACCCAGAGACGATCCGTT 60.899 55.000 0.00 0.00 41.37 4.44
980 1018 1.671845 AGAGACGATCCGTTGAGCTAC 59.328 52.381 0.00 0.00 41.37 3.58
981 1019 1.671845 GAGACGATCCGTTGAGCTACT 59.328 52.381 0.00 0.00 41.37 2.57
982 1020 2.871022 GAGACGATCCGTTGAGCTACTA 59.129 50.000 0.00 0.00 41.37 1.82
984 1022 1.334243 ACGATCCGTTGAGCTACTAGC 59.666 52.381 0.00 0.00 38.10 3.42
987 1025 6.269065 ACGATCCGTTGAGCTACTAGCTTC 62.269 50.000 11.98 6.35 45.28 3.86
1254 1296 2.827190 ATAGTCGACGCCTCCGCA 60.827 61.111 10.46 0.00 38.22 5.69
1472 1533 1.536766 TCGCTTTGGTCAATTGCTCAG 59.463 47.619 0.00 0.00 0.00 3.35
1473 1534 1.706443 GCTTTGGTCAATTGCTCAGC 58.294 50.000 0.00 0.00 0.00 4.26
1522 1613 7.591426 GGCAAGAACAGAGTACTTTTATTTGTG 59.409 37.037 0.00 0.00 0.00 3.33
1551 1648 0.392336 GGTGGCATTGGCAAGAACAA 59.608 50.000 15.17 0.00 43.71 2.83
1573 1670 1.925185 GGAAACTTCGCGGTAGATCAC 59.075 52.381 6.13 0.00 0.00 3.06
1577 1674 0.172578 CTTCGCGGTAGATCACACCA 59.827 55.000 6.13 0.00 35.67 4.17
1583 1689 2.094390 GCGGTAGATCACACCAAGTACA 60.094 50.000 14.77 0.00 35.67 2.90
1585 1691 4.202080 GCGGTAGATCACACCAAGTACATA 60.202 45.833 14.77 0.00 35.67 2.29
1589 1695 5.755409 AGATCACACCAAGTACATACCAA 57.245 39.130 0.00 0.00 0.00 3.67
1600 1706 4.662278 AGTACATACCAAAATGTGCCAGT 58.338 39.130 0.00 0.00 41.70 4.00
1623 1729 5.914898 TCCTTCACGTCATCTTCTTATCA 57.085 39.130 0.00 0.00 0.00 2.15
1640 1746 7.517614 TCTTATCAACTCATCCTAGCTACTG 57.482 40.000 0.00 0.00 0.00 2.74
1645 1751 4.511786 ACTCATCCTAGCTACTGTCTGA 57.488 45.455 0.00 0.00 0.00 3.27
1650 1761 7.230510 ACTCATCCTAGCTACTGTCTGATTAAG 59.769 40.741 0.00 0.00 0.00 1.85
1684 1795 6.920758 AGTCGAAATCATCATGCTAAGTACTC 59.079 38.462 0.00 0.00 0.00 2.59
1685 1796 6.144724 GTCGAAATCATCATGCTAAGTACTCC 59.855 42.308 0.00 0.00 0.00 3.85
1687 1798 6.506538 AAATCATCATGCTAAGTACTCCCT 57.493 37.500 0.00 0.00 0.00 4.20
1691 1802 5.189736 TCATCATGCTAAGTACTCCCTTTGT 59.810 40.000 0.00 0.00 0.00 2.83
1692 1803 5.499004 TCATGCTAAGTACTCCCTTTGTT 57.501 39.130 0.00 0.00 0.00 2.83
1693 1804 5.488341 TCATGCTAAGTACTCCCTTTGTTC 58.512 41.667 0.00 0.00 0.00 3.18
1694 1805 3.921677 TGCTAAGTACTCCCTTTGTTCG 58.078 45.455 0.00 0.00 0.00 3.95
1695 1806 3.259902 GCTAAGTACTCCCTTTGTTCGG 58.740 50.000 0.00 0.00 0.00 4.30
1696 1807 3.056322 GCTAAGTACTCCCTTTGTTCGGA 60.056 47.826 0.00 0.00 0.00 4.55
1697 1808 4.562143 GCTAAGTACTCCCTTTGTTCGGAA 60.562 45.833 0.00 0.00 0.00 4.30
1698 1809 3.679824 AGTACTCCCTTTGTTCGGAAG 57.320 47.619 0.00 0.00 0.00 3.46
1699 1810 2.970640 AGTACTCCCTTTGTTCGGAAGT 59.029 45.455 0.00 0.00 0.00 3.01
1700 1811 4.154942 AGTACTCCCTTTGTTCGGAAGTA 58.845 43.478 0.00 0.00 0.00 2.24
1701 1812 3.397849 ACTCCCTTTGTTCGGAAGTAC 57.602 47.619 0.00 0.00 0.00 2.73
1702 1813 2.970640 ACTCCCTTTGTTCGGAAGTACT 59.029 45.455 0.00 0.00 32.11 2.73
1703 1814 3.390311 ACTCCCTTTGTTCGGAAGTACTT 59.610 43.478 8.13 8.13 32.11 2.24
1704 1815 3.735591 TCCCTTTGTTCGGAAGTACTTG 58.264 45.455 14.14 0.00 32.11 3.16
1705 1816 3.135167 TCCCTTTGTTCGGAAGTACTTGT 59.865 43.478 14.14 0.00 32.11 3.16
1706 1817 3.497262 CCCTTTGTTCGGAAGTACTTGTC 59.503 47.826 14.14 4.21 32.11 3.18
1707 1818 3.497262 CCTTTGTTCGGAAGTACTTGTCC 59.503 47.826 14.14 8.26 32.11 4.02
1708 1819 4.377897 CTTTGTTCGGAAGTACTTGTCCT 58.622 43.478 14.14 0.00 32.11 3.85
1709 1820 5.510179 CCTTTGTTCGGAAGTACTTGTCCTA 60.510 44.000 14.14 0.00 32.11 2.94
1710 1821 5.534207 TTGTTCGGAAGTACTTGTCCTAA 57.466 39.130 14.14 4.66 32.11 2.69
1711 1822 5.534207 TGTTCGGAAGTACTTGTCCTAAA 57.466 39.130 14.14 3.80 32.11 1.85
1712 1823 5.916318 TGTTCGGAAGTACTTGTCCTAAAA 58.084 37.500 14.14 0.00 32.11 1.52
1713 1824 6.347696 TGTTCGGAAGTACTTGTCCTAAAAA 58.652 36.000 14.14 0.00 32.11 1.94
1714 1825 6.993902 TGTTCGGAAGTACTTGTCCTAAAAAT 59.006 34.615 14.14 0.00 32.11 1.82
1715 1826 8.149647 TGTTCGGAAGTACTTGTCCTAAAAATA 58.850 33.333 14.14 0.00 32.11 1.40
1716 1827 8.654215 GTTCGGAAGTACTTGTCCTAAAAATAG 58.346 37.037 14.14 0.00 0.00 1.73
1717 1828 7.899973 TCGGAAGTACTTGTCCTAAAAATAGT 58.100 34.615 14.14 0.00 0.00 2.12
1718 1829 8.370182 TCGGAAGTACTTGTCCTAAAAATAGTT 58.630 33.333 14.14 0.00 0.00 2.24
1719 1830 8.440833 CGGAAGTACTTGTCCTAAAAATAGTTG 58.559 37.037 14.14 0.00 0.00 3.16
1720 1831 9.498176 GGAAGTACTTGTCCTAAAAATAGTTGA 57.502 33.333 14.14 0.00 0.00 3.18
1726 1837 9.981114 ACTTGTCCTAAAAATAGTTGAAAATGG 57.019 29.630 0.00 0.00 0.00 3.16
1772 1883 8.375493 AGTCTAGATACAACCATTTTAGGACA 57.625 34.615 0.00 0.00 0.00 4.02
1773 1884 8.822805 AGTCTAGATACAACCATTTTAGGACAA 58.177 33.333 0.00 0.00 0.00 3.18
1774 1885 9.444600 GTCTAGATACAACCATTTTAGGACAAA 57.555 33.333 0.00 0.00 0.00 2.83
1782 1893 9.418045 ACAACCATTTTAGGACAAATATTTTCG 57.582 29.630 0.00 0.00 0.00 3.46
1783 1894 8.868916 CAACCATTTTAGGACAAATATTTTCGG 58.131 33.333 0.00 0.00 0.00 4.30
1784 1895 8.356000 ACCATTTTAGGACAAATATTTTCGGA 57.644 30.769 0.00 0.00 0.00 4.55
1785 1896 8.248253 ACCATTTTAGGACAAATATTTTCGGAC 58.752 33.333 0.00 0.00 0.00 4.79
1786 1897 7.431084 CCATTTTAGGACAAATATTTTCGGACG 59.569 37.037 0.00 0.00 0.00 4.79
1787 1898 6.425577 TTTAGGACAAATATTTTCGGACGG 57.574 37.500 0.00 0.00 0.00 4.79
1788 1899 4.210724 AGGACAAATATTTTCGGACGGA 57.789 40.909 0.00 0.00 0.00 4.69
1789 1900 4.189231 AGGACAAATATTTTCGGACGGAG 58.811 43.478 0.00 0.00 0.00 4.63
1790 1901 3.311596 GGACAAATATTTTCGGACGGAGG 59.688 47.826 0.00 0.00 0.00 4.30
1791 1902 3.275999 ACAAATATTTTCGGACGGAGGG 58.724 45.455 0.00 0.00 0.00 4.30
1792 1903 3.054948 ACAAATATTTTCGGACGGAGGGA 60.055 43.478 0.00 0.00 0.00 4.20
1793 1904 3.470645 AATATTTTCGGACGGAGGGAG 57.529 47.619 0.00 0.00 0.00 4.30
1794 1905 1.856629 TATTTTCGGACGGAGGGAGT 58.143 50.000 0.00 0.00 0.00 3.85
1795 1906 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
1796 1907 1.180029 TTTTCGGACGGAGGGAGTAG 58.820 55.000 0.00 0.00 0.00 2.57
1797 1908 0.682209 TTTCGGACGGAGGGAGTAGG 60.682 60.000 0.00 0.00 0.00 3.18
1798 1909 1.856539 TTCGGACGGAGGGAGTAGGT 61.857 60.000 0.00 0.00 0.00 3.08
1799 1910 2.119655 CGGACGGAGGGAGTAGGTG 61.120 68.421 0.00 0.00 0.00 4.00
1800 1911 2.424733 GGACGGAGGGAGTAGGTGC 61.425 68.421 0.00 0.00 0.00 5.01
1801 1912 2.363925 ACGGAGGGAGTAGGTGCC 60.364 66.667 0.00 0.00 36.73 5.01
1812 1923 0.035056 GTAGGTGCCCATTGCTGAGT 60.035 55.000 0.00 0.00 42.00 3.41
1813 1924 0.253044 TAGGTGCCCATTGCTGAGTC 59.747 55.000 0.00 0.00 42.00 3.36
1814 1925 1.303561 GGTGCCCATTGCTGAGTCA 60.304 57.895 0.00 0.00 42.00 3.41
1815 1926 1.310933 GGTGCCCATTGCTGAGTCAG 61.311 60.000 16.21 16.21 42.00 3.51
1847 1971 5.782047 CACCACCATTCTTGAAGCAATTAA 58.218 37.500 0.00 0.00 0.00 1.40
1871 1995 5.664457 TCTAGTAGATCATGCTTGTTGTGG 58.336 41.667 0.00 0.00 0.00 4.17
1876 2000 4.655963 AGATCATGCTTGTTGTGGTACTT 58.344 39.130 0.00 0.00 0.00 2.24
1885 2009 6.037391 TGCTTGTTGTGGTACTTACAAGTTAC 59.963 38.462 20.29 11.10 45.68 2.50
1896 2020 9.106070 GGTACTTACAAGTTACAAATATCTGGG 57.894 37.037 0.00 0.00 40.37 4.45
1900 2024 3.595190 AGTTACAAATATCTGGGCCCC 57.405 47.619 22.27 0.85 0.00 5.80
1901 2025 2.856231 AGTTACAAATATCTGGGCCCCA 59.144 45.455 22.27 0.47 0.00 4.96
1902 2026 3.270960 AGTTACAAATATCTGGGCCCCAA 59.729 43.478 22.27 7.66 30.80 4.12
1928 2054 5.590530 AAAACTGCAAAACATACTGACCA 57.409 34.783 0.00 0.00 0.00 4.02
1929 2055 4.568152 AACTGCAAAACATACTGACCAC 57.432 40.909 0.00 0.00 0.00 4.16
1930 2056 2.884639 ACTGCAAAACATACTGACCACC 59.115 45.455 0.00 0.00 0.00 4.61
1931 2057 3.149196 CTGCAAAACATACTGACCACCT 58.851 45.455 0.00 0.00 0.00 4.00
1950 2076 3.181475 ACCTCACCTGATAAGTACATGCG 60.181 47.826 0.00 0.00 0.00 4.73
1963 2089 4.929781 AGTACATGCGCTAGGTAAAGTAC 58.070 43.478 9.73 4.76 0.00 2.73
1977 2103 7.778185 AGGTAAAGTACAGTGTCTTATCTGT 57.222 36.000 0.00 0.00 45.21 3.41
2080 2206 7.491696 AGTTGTTAGCATTCTTAACCGACTATC 59.508 37.037 0.00 0.00 0.00 2.08
2082 2208 6.755141 TGTTAGCATTCTTAACCGACTATCAC 59.245 38.462 0.00 0.00 0.00 3.06
2187 2316 2.429069 CTTTTGCGCGAACCCTGC 60.429 61.111 12.10 0.00 0.00 4.85
2196 2325 0.531200 GCGAACCCTGCACTACTACT 59.469 55.000 0.00 0.00 0.00 2.57
2228 2357 3.521126 ACAGCAGAAACCATACCTCTGAT 59.479 43.478 2.57 0.00 39.15 2.90
2229 2358 4.716784 ACAGCAGAAACCATACCTCTGATA 59.283 41.667 2.57 0.00 39.15 2.15
2230 2359 5.163364 ACAGCAGAAACCATACCTCTGATAG 60.163 44.000 2.57 0.00 39.15 2.08
2245 2374 6.841443 CTCTGATAGGAGTTAATTGCACAG 57.159 41.667 0.00 0.00 0.00 3.66
2246 2375 6.544928 TCTGATAGGAGTTAATTGCACAGA 57.455 37.500 0.00 0.00 0.00 3.41
2247 2376 6.946340 TCTGATAGGAGTTAATTGCACAGAA 58.054 36.000 9.78 0.00 0.00 3.02
2248 2377 7.044181 TCTGATAGGAGTTAATTGCACAGAAG 58.956 38.462 9.78 0.00 0.00 2.85
2249 2378 6.711277 TGATAGGAGTTAATTGCACAGAAGT 58.289 36.000 0.00 0.00 0.00 3.01
2250 2379 7.847096 TGATAGGAGTTAATTGCACAGAAGTA 58.153 34.615 0.00 0.00 0.00 2.24
2251 2380 7.764443 TGATAGGAGTTAATTGCACAGAAGTAC 59.236 37.037 0.00 0.00 0.00 2.73
2252 2381 5.246307 AGGAGTTAATTGCACAGAAGTACC 58.754 41.667 0.00 0.00 0.00 3.34
2253 2382 5.001232 GGAGTTAATTGCACAGAAGTACCA 58.999 41.667 0.00 0.00 0.00 3.25
2254 2383 5.648092 GGAGTTAATTGCACAGAAGTACCAT 59.352 40.000 0.00 0.00 0.00 3.55
2255 2384 6.821665 GGAGTTAATTGCACAGAAGTACCATA 59.178 38.462 0.00 0.00 0.00 2.74
2256 2385 7.335924 GGAGTTAATTGCACAGAAGTACCATAA 59.664 37.037 0.00 0.00 0.00 1.90
2257 2386 8.807948 AGTTAATTGCACAGAAGTACCATAAT 57.192 30.769 0.00 0.00 0.00 1.28
2258 2387 9.243105 AGTTAATTGCACAGAAGTACCATAATT 57.757 29.630 0.00 0.00 0.00 1.40
2259 2388 9.503427 GTTAATTGCACAGAAGTACCATAATTC 57.497 33.333 0.00 0.00 33.29 2.17
2260 2389 5.794687 TTGCACAGAAGTACCATAATTCG 57.205 39.130 0.00 0.00 37.79 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 4.038042 GGCAGCAGAGGTAAAGAAGTTTTT 59.962 41.667 0.00 0.00 0.00 1.94
13 14 3.570125 GGCAGCAGAGGTAAAGAAGTTTT 59.430 43.478 0.00 0.00 0.00 2.43
14 15 3.149981 GGCAGCAGAGGTAAAGAAGTTT 58.850 45.455 0.00 0.00 0.00 2.66
15 16 2.553247 GGGCAGCAGAGGTAAAGAAGTT 60.553 50.000 0.00 0.00 0.00 2.66
16 17 1.003696 GGGCAGCAGAGGTAAAGAAGT 59.996 52.381 0.00 0.00 0.00 3.01
17 18 1.280421 AGGGCAGCAGAGGTAAAGAAG 59.720 52.381 0.00 0.00 0.00 2.85
18 19 1.003580 CAGGGCAGCAGAGGTAAAGAA 59.996 52.381 0.00 0.00 0.00 2.52
19 20 0.615331 CAGGGCAGCAGAGGTAAAGA 59.385 55.000 0.00 0.00 0.00 2.52
20 21 1.028868 GCAGGGCAGCAGAGGTAAAG 61.029 60.000 0.00 0.00 0.00 1.85
21 22 1.002134 GCAGGGCAGCAGAGGTAAA 60.002 57.895 0.00 0.00 0.00 2.01
22 23 2.223443 TGCAGGGCAGCAGAGGTAA 61.223 57.895 0.00 0.00 40.11 2.85
23 24 2.607442 TGCAGGGCAGCAGAGGTA 60.607 61.111 0.00 0.00 40.11 3.08
46 47 2.412937 GTGTGTGGGTGCAAGTGC 59.587 61.111 0.00 0.00 42.50 4.40
47 48 1.433064 GTGTGTGTGGGTGCAAGTG 59.567 57.895 0.00 0.00 0.00 3.16
48 49 2.112198 CGTGTGTGTGGGTGCAAGT 61.112 57.895 0.00 0.00 0.00 3.16
49 50 2.112198 ACGTGTGTGTGGGTGCAAG 61.112 57.895 0.00 0.00 0.00 4.01
50 51 2.045829 ACGTGTGTGTGGGTGCAA 60.046 55.556 0.00 0.00 0.00 4.08
51 52 2.821810 CACGTGTGTGTGGGTGCA 60.822 61.111 7.58 0.00 41.34 4.57
60 61 2.822255 GTGGTGGTGCACGTGTGT 60.822 61.111 18.38 0.00 34.83 3.72
61 62 2.821810 TGTGGTGGTGCACGTGTG 60.822 61.111 18.38 0.00 34.83 3.82
62 63 2.822255 GTGTGGTGGTGCACGTGT 60.822 61.111 18.38 0.00 34.83 4.49
63 64 2.186160 ATGTGTGGTGGTGCACGTG 61.186 57.895 12.28 12.28 38.36 4.49
64 65 2.186160 CATGTGTGGTGGTGCACGT 61.186 57.895 11.45 0.00 38.36 4.49
65 66 2.638719 CATGTGTGGTGGTGCACG 59.361 61.111 11.45 0.00 38.36 5.34
66 67 2.336088 GCATGTGTGGTGGTGCAC 59.664 61.111 8.80 8.80 37.52 4.57
67 68 2.123982 TGCATGTGTGGTGGTGCA 60.124 55.556 0.00 0.00 44.50 4.57
68 69 1.213537 GATGCATGTGTGGTGGTGC 59.786 57.895 2.46 0.00 38.05 5.01
69 70 0.894642 TGGATGCATGTGTGGTGGTG 60.895 55.000 2.46 0.00 0.00 4.17
70 71 0.895100 GTGGATGCATGTGTGGTGGT 60.895 55.000 2.46 0.00 0.00 4.16
71 72 0.894642 TGTGGATGCATGTGTGGTGG 60.895 55.000 2.46 0.00 0.00 4.61
72 73 0.960286 TTGTGGATGCATGTGTGGTG 59.040 50.000 2.46 0.00 0.00 4.17
73 74 1.202915 TCTTGTGGATGCATGTGTGGT 60.203 47.619 2.46 0.00 0.00 4.16
74 75 1.536940 TCTTGTGGATGCATGTGTGG 58.463 50.000 2.46 0.00 0.00 4.17
75 76 3.646611 TTTCTTGTGGATGCATGTGTG 57.353 42.857 2.46 0.00 0.00 3.82
76 77 3.550639 CGTTTTCTTGTGGATGCATGTGT 60.551 43.478 2.46 0.00 0.00 3.72
77 78 2.981805 CGTTTTCTTGTGGATGCATGTG 59.018 45.455 2.46 0.00 0.00 3.21
78 79 2.030007 CCGTTTTCTTGTGGATGCATGT 60.030 45.455 2.46 0.00 0.00 3.21
79 80 2.598589 CCGTTTTCTTGTGGATGCATG 58.401 47.619 2.46 0.00 0.00 4.06
80 81 1.067635 GCCGTTTTCTTGTGGATGCAT 60.068 47.619 0.00 0.00 0.00 3.96
81 82 0.313672 GCCGTTTTCTTGTGGATGCA 59.686 50.000 0.00 0.00 0.00 3.96
82 83 0.313672 TGCCGTTTTCTTGTGGATGC 59.686 50.000 0.00 0.00 0.00 3.91
83 84 2.393764 GTTGCCGTTTTCTTGTGGATG 58.606 47.619 0.00 0.00 0.00 3.51
84 85 1.001815 CGTTGCCGTTTTCTTGTGGAT 60.002 47.619 0.00 0.00 0.00 3.41
85 86 0.378962 CGTTGCCGTTTTCTTGTGGA 59.621 50.000 0.00 0.00 0.00 4.02
86 87 2.866688 CGTTGCCGTTTTCTTGTGG 58.133 52.632 0.00 0.00 0.00 4.17
97 98 0.670546 AACTCCATCTGACGTTGCCG 60.671 55.000 0.00 0.00 40.83 5.69
98 99 1.079503 GAACTCCATCTGACGTTGCC 58.920 55.000 0.00 0.00 0.00 4.52
99 100 1.728971 CTGAACTCCATCTGACGTTGC 59.271 52.381 0.00 0.00 0.00 4.17
100 101 2.289072 ACCTGAACTCCATCTGACGTTG 60.289 50.000 0.00 0.00 0.00 4.10
101 102 1.971357 ACCTGAACTCCATCTGACGTT 59.029 47.619 0.00 0.00 0.00 3.99
102 103 1.546476 GACCTGAACTCCATCTGACGT 59.454 52.381 0.00 0.00 0.00 4.34
103 104 1.134965 GGACCTGAACTCCATCTGACG 60.135 57.143 0.00 0.00 0.00 4.35
104 105 1.902508 TGGACCTGAACTCCATCTGAC 59.097 52.381 0.00 0.00 32.52 3.51
105 106 2.325661 TGGACCTGAACTCCATCTGA 57.674 50.000 0.00 0.00 32.52 3.27
110 111 0.984230 GGTGATGGACCTGAACTCCA 59.016 55.000 0.00 0.00 42.25 3.86
111 112 3.863407 GGTGATGGACCTGAACTCC 57.137 57.895 0.00 0.00 42.25 3.85
127 128 1.275291 CGTGTCCTCACCATTGTAGGT 59.725 52.381 0.00 0.00 44.48 3.08
128 129 1.275291 ACGTGTCCTCACCATTGTAGG 59.725 52.381 0.00 0.00 41.09 3.18
129 130 2.337583 CACGTGTCCTCACCATTGTAG 58.662 52.381 7.58 0.00 41.09 2.74
130 131 1.001520 CCACGTGTCCTCACCATTGTA 59.998 52.381 15.65 0.00 41.09 2.41
131 132 0.250295 CCACGTGTCCTCACCATTGT 60.250 55.000 15.65 0.00 41.09 2.71
132 133 1.577328 GCCACGTGTCCTCACCATTG 61.577 60.000 15.65 0.00 41.09 2.82
133 134 1.302511 GCCACGTGTCCTCACCATT 60.303 57.895 15.65 0.00 41.09 3.16
134 135 2.347490 GCCACGTGTCCTCACCAT 59.653 61.111 15.65 0.00 41.09 3.55
135 136 3.936203 GGCCACGTGTCCTCACCA 61.936 66.667 15.65 0.00 41.09 4.17
147 148 1.564207 GGAACGAGTATAACGGCCAC 58.436 55.000 2.24 0.00 34.93 5.01
162 163 3.662186 CGCACTACATTTTGAAACGGAAC 59.338 43.478 0.00 0.00 0.00 3.62
163 164 3.312973 ACGCACTACATTTTGAAACGGAA 59.687 39.130 0.00 0.00 0.00 4.30
164 165 2.873472 ACGCACTACATTTTGAAACGGA 59.127 40.909 0.00 0.00 0.00 4.69
165 166 3.262135 ACGCACTACATTTTGAAACGG 57.738 42.857 0.00 0.00 0.00 4.44
166 167 4.763874 TGTACGCACTACATTTTGAAACG 58.236 39.130 0.00 0.00 29.73 3.60
167 168 5.981174 TCTGTACGCACTACATTTTGAAAC 58.019 37.500 0.00 0.00 34.69 2.78
168 169 6.795098 ATCTGTACGCACTACATTTTGAAA 57.205 33.333 0.00 0.00 34.69 2.69
169 170 6.795098 AATCTGTACGCACTACATTTTGAA 57.205 33.333 0.00 0.00 34.69 2.69
170 171 6.795098 AAATCTGTACGCACTACATTTTGA 57.205 33.333 0.00 0.00 34.69 2.69
171 172 7.589587 TCAAAAATCTGTACGCACTACATTTTG 59.410 33.333 15.13 15.13 34.69 2.44
172 173 7.644490 TCAAAAATCTGTACGCACTACATTTT 58.356 30.769 0.00 0.00 34.69 1.82
173 174 7.197071 TCAAAAATCTGTACGCACTACATTT 57.803 32.000 0.00 0.00 34.69 2.32
174 175 6.795098 TCAAAAATCTGTACGCACTACATT 57.205 33.333 0.00 0.00 34.69 2.71
175 176 6.795098 TTCAAAAATCTGTACGCACTACAT 57.205 33.333 0.00 0.00 34.69 2.29
176 177 6.606234 TTTCAAAAATCTGTACGCACTACA 57.394 33.333 0.00 0.00 34.01 2.74
177 178 7.901874 TTTTTCAAAAATCTGTACGCACTAC 57.098 32.000 0.00 0.00 0.00 2.73
209 210 6.930667 AATTTGATCAAAGTTTGCAAAGCT 57.069 29.167 24.17 10.07 39.89 3.74
338 339 6.234177 ACTTTGTTCATGTTTGTGGGAAAAA 58.766 32.000 0.00 0.00 0.00 1.94
339 340 5.799213 ACTTTGTTCATGTTTGTGGGAAAA 58.201 33.333 0.00 0.00 0.00 2.29
340 341 5.413309 ACTTTGTTCATGTTTGTGGGAAA 57.587 34.783 0.00 0.00 0.00 3.13
341 342 5.413309 AACTTTGTTCATGTTTGTGGGAA 57.587 34.783 0.00 0.00 0.00 3.97
342 343 5.413309 AAACTTTGTTCATGTTTGTGGGA 57.587 34.783 0.00 0.00 32.77 4.37
343 344 6.313252 CAAAAACTTTGTTCATGTTTGTGGG 58.687 36.000 0.00 0.00 35.47 4.61
344 345 5.794448 GCAAAAACTTTGTTCATGTTTGTGG 59.206 36.000 16.07 7.79 37.85 4.17
345 346 5.504065 CGCAAAAACTTTGTTCATGTTTGTG 59.496 36.000 12.91 12.91 39.33 3.33
346 347 5.390356 CCGCAAAAACTTTGTTCATGTTTGT 60.390 36.000 0.00 0.00 33.96 2.83
347 348 5.020758 CCGCAAAAACTTTGTTCATGTTTG 58.979 37.500 0.00 0.00 33.96 2.93
348 349 4.693095 ACCGCAAAAACTTTGTTCATGTTT 59.307 33.333 0.00 0.00 34.90 2.83
349 350 4.249661 ACCGCAAAAACTTTGTTCATGTT 58.750 34.783 0.00 0.00 0.00 2.71
350 351 3.855858 ACCGCAAAAACTTTGTTCATGT 58.144 36.364 0.00 0.00 0.00 3.21
351 352 4.856115 AACCGCAAAAACTTTGTTCATG 57.144 36.364 1.45 0.00 0.00 3.07
352 353 5.871465 AAAACCGCAAAAACTTTGTTCAT 57.129 30.435 1.45 0.00 0.00 2.57
353 354 5.674933 AAAAACCGCAAAAACTTTGTTCA 57.325 30.435 1.45 0.00 0.00 3.18
384 385 0.787787 CAACATGCAGTGCAACATGC 59.212 50.000 23.90 16.16 46.08 4.06
386 387 0.319083 CCCAACATGCAGTGCAACAT 59.681 50.000 23.90 7.64 43.62 2.71
387 388 1.042003 ACCCAACATGCAGTGCAACA 61.042 50.000 23.90 0.00 43.62 3.33
388 389 0.104671 AACCCAACATGCAGTGCAAC 59.895 50.000 23.90 0.00 43.62 4.17
389 390 0.388659 GAACCCAACATGCAGTGCAA 59.611 50.000 23.90 5.75 43.62 4.08
390 391 0.754587 TGAACCCAACATGCAGTGCA 60.755 50.000 22.22 22.22 44.86 4.57
391 392 0.388659 TTGAACCCAACATGCAGTGC 59.611 50.000 8.58 8.58 0.00 4.40
392 393 2.679450 CATTGAACCCAACATGCAGTG 58.321 47.619 0.00 0.00 34.72 3.66
393 394 1.001181 GCATTGAACCCAACATGCAGT 59.999 47.619 0.00 0.00 37.89 4.40
394 395 1.001068 TGCATTGAACCCAACATGCAG 59.999 47.619 1.57 0.00 40.99 4.41
395 396 1.046204 TGCATTGAACCCAACATGCA 58.954 45.000 1.57 1.57 42.58 3.96
396 397 1.431496 GTGCATTGAACCCAACATGC 58.569 50.000 0.00 0.00 38.25 4.06
397 398 1.669502 CGGTGCATTGAACCCAACATG 60.670 52.381 8.31 0.00 34.72 3.21
398 399 0.602562 CGGTGCATTGAACCCAACAT 59.397 50.000 8.31 0.00 34.72 2.71
399 400 0.753479 ACGGTGCATTGAACCCAACA 60.753 50.000 8.31 0.00 34.72 3.33
400 401 0.387565 AACGGTGCATTGAACCCAAC 59.612 50.000 8.31 0.00 34.72 3.77
401 402 0.387202 CAACGGTGCATTGAACCCAA 59.613 50.000 8.31 0.00 33.88 4.12
402 403 1.459455 CCAACGGTGCATTGAACCCA 61.459 55.000 8.31 0.00 33.88 4.51
403 404 1.288752 CCAACGGTGCATTGAACCC 59.711 57.895 8.31 0.00 33.88 4.11
404 405 1.372872 GCCAACGGTGCATTGAACC 60.373 57.895 3.40 3.40 0.00 3.62
432 433 0.737715 CTCCTACACAAGCACCGCTC 60.738 60.000 0.00 0.00 38.25 5.03
433 434 1.293498 CTCCTACACAAGCACCGCT 59.707 57.895 0.00 0.00 42.56 5.52
493 495 9.509956 CCCTAATTAATTACGGGAAATCATACA 57.490 33.333 24.46 0.00 34.96 2.29
496 498 7.668469 GTCCCCTAATTAATTACGGGAAATCAT 59.332 37.037 30.85 0.81 44.05 2.45
503 505 3.069289 GCGTCCCCTAATTAATTACGGG 58.931 50.000 25.33 25.33 38.90 5.28
504 506 3.992427 GAGCGTCCCCTAATTAATTACGG 59.008 47.826 17.54 15.54 0.00 4.02
505 507 4.684703 CAGAGCGTCCCCTAATTAATTACG 59.315 45.833 13.54 13.54 0.00 3.18
520 522 5.437263 TCGTTGATTTTTAAACAGAGCGTC 58.563 37.500 0.00 0.00 0.00 5.19
522 524 6.911484 ATTCGTTGATTTTTAAACAGAGCG 57.089 33.333 0.00 0.00 0.00 5.03
561 563 8.141268 TGCTAGTAGAATTTTTCAAAACCAAGG 58.859 33.333 0.00 0.00 0.00 3.61
565 567 9.608617 GTAGTGCTAGTAGAATTTTTCAAAACC 57.391 33.333 0.00 0.00 0.00 3.27
591 593 7.970384 TGCCGTAACTATGTTTAGATTTTCAG 58.030 34.615 0.00 0.00 0.00 3.02
593 595 9.615295 TTTTGCCGTAACTATGTTTAGATTTTC 57.385 29.630 0.00 0.00 0.00 2.29
622 628 6.333416 GCAGGAAAAGTCTCCAAATATTTCC 58.667 40.000 0.00 6.93 43.80 3.13
651 659 2.722201 GGCCAGGGTGACTAGGACG 61.722 68.421 0.00 0.00 0.00 4.79
687 695 1.369625 CTGGGTAAAGATGTGACGGC 58.630 55.000 0.00 0.00 0.00 5.68
707 715 0.461339 CGTTATCCCGTGGGGTGAAG 60.461 60.000 4.81 0.00 44.74 3.02
710 718 2.512974 GCGTTATCCCGTGGGGTG 60.513 66.667 4.81 0.00 44.74 4.61
738 746 0.858583 TTGTGACGAGCAACATGACG 59.141 50.000 0.00 0.00 0.00 4.35
739 747 2.224079 ACATTGTGACGAGCAACATGAC 59.776 45.455 0.00 0.00 0.00 3.06
740 748 2.493035 ACATTGTGACGAGCAACATGA 58.507 42.857 0.00 0.00 0.00 3.07
741 749 2.975410 ACATTGTGACGAGCAACATG 57.025 45.000 0.00 0.00 0.00 3.21
742 750 4.094887 GGATAACATTGTGACGAGCAACAT 59.905 41.667 0.00 0.00 0.00 2.71
743 751 3.435327 GGATAACATTGTGACGAGCAACA 59.565 43.478 0.00 0.00 0.00 3.33
744 752 3.435327 TGGATAACATTGTGACGAGCAAC 59.565 43.478 0.00 0.00 0.00 4.17
745 753 3.669536 TGGATAACATTGTGACGAGCAA 58.330 40.909 0.00 0.00 0.00 3.91
746 754 3.261580 CTGGATAACATTGTGACGAGCA 58.738 45.455 0.00 0.00 0.00 4.26
747 755 3.262420 ACTGGATAACATTGTGACGAGC 58.738 45.455 0.00 0.00 0.00 5.03
748 756 5.171476 AGAACTGGATAACATTGTGACGAG 58.829 41.667 0.00 0.00 0.00 4.18
749 757 5.147330 AGAACTGGATAACATTGTGACGA 57.853 39.130 0.00 0.00 0.00 4.20
767 788 1.002792 GACCGACAACTTGGCAAGAAC 60.003 52.381 32.50 17.72 0.00 3.01
768 789 1.305201 GACCGACAACTTGGCAAGAA 58.695 50.000 32.50 0.00 0.00 2.52
772 793 1.070786 GAGGACCGACAACTTGGCA 59.929 57.895 0.00 0.00 0.00 4.92
792 813 8.903820 CCTTTTTATATTGCTTTAGTAGTGCCT 58.096 33.333 0.00 0.00 0.00 4.75
793 814 8.683615 ACCTTTTTATATTGCTTTAGTAGTGCC 58.316 33.333 0.00 0.00 0.00 5.01
794 815 9.503427 CACCTTTTTATATTGCTTTAGTAGTGC 57.497 33.333 0.00 0.00 0.00 4.40
951 989 1.591703 GATCGTCTCTGGGTGTGCA 59.408 57.895 0.00 0.00 0.00 4.57
952 990 1.153549 GGATCGTCTCTGGGTGTGC 60.154 63.158 0.00 0.00 0.00 4.57
962 1000 1.752683 AGTAGCTCAACGGATCGTCT 58.247 50.000 0.00 0.00 39.99 4.18
980 1018 2.892425 CCGCCGCCAAGAAGCTAG 60.892 66.667 0.00 0.00 0.00 3.42
1038 1080 1.230635 CCTGGAACACCTGCACGAAG 61.231 60.000 0.00 0.00 0.00 3.79
1237 1279 0.887836 TATGCGGAGGCGTCGACTAT 60.888 55.000 14.70 0.00 44.10 2.12
1239 1281 2.827190 TATGCGGAGGCGTCGACT 60.827 61.111 14.70 0.00 44.10 4.18
1522 1613 1.906333 AATGCCACCCCGGTCAAAC 60.906 57.895 0.00 0.00 36.97 2.93
1551 1648 2.232941 TGATCTACCGCGAAGTTTCCTT 59.767 45.455 8.23 0.00 0.00 3.36
1563 1660 3.861276 TGTACTTGGTGTGATCTACCG 57.139 47.619 12.91 4.83 41.18 4.02
1564 1661 5.128171 TGGTATGTACTTGGTGTGATCTACC 59.872 44.000 11.42 11.42 38.71 3.18
1573 1670 5.160641 GCACATTTTGGTATGTACTTGGTG 58.839 41.667 0.00 0.00 36.64 4.17
1577 1674 5.076873 ACTGGCACATTTTGGTATGTACTT 58.923 37.500 0.00 0.00 36.64 2.24
1583 1689 3.778265 AGGAACTGGCACATTTTGGTAT 58.222 40.909 0.00 0.00 38.20 2.73
1585 1691 2.086610 AGGAACTGGCACATTTTGGT 57.913 45.000 0.00 0.00 38.20 3.67
1589 1695 1.608590 CGTGAAGGAACTGGCACATTT 59.391 47.619 0.00 0.00 42.31 2.32
1600 1706 6.280855 TGATAAGAAGATGACGTGAAGGAA 57.719 37.500 0.00 0.00 0.00 3.36
1623 1729 4.861196 TCAGACAGTAGCTAGGATGAGTT 58.139 43.478 0.00 0.00 0.00 3.01
1650 1761 8.715998 AGCATGATGATTTCGACTGAATATTAC 58.284 33.333 0.00 0.00 33.20 1.89
1665 1776 6.506538 AAGGGAGTACTTAGCATGATGATT 57.493 37.500 0.00 0.00 0.00 2.57
1684 1795 3.473625 ACAAGTACTTCCGAACAAAGGG 58.526 45.455 4.77 0.00 0.00 3.95
1685 1796 3.497262 GGACAAGTACTTCCGAACAAAGG 59.503 47.826 4.77 0.00 0.00 3.11
1687 1798 4.411256 AGGACAAGTACTTCCGAACAAA 57.589 40.909 4.77 0.00 36.95 2.83
1691 1802 8.370182 ACTATTTTTAGGACAAGTACTTCCGAA 58.630 33.333 4.77 5.12 36.95 4.30
1692 1803 7.899973 ACTATTTTTAGGACAAGTACTTCCGA 58.100 34.615 4.77 0.00 36.95 4.55
1693 1804 8.440833 CAACTATTTTTAGGACAAGTACTTCCG 58.559 37.037 4.77 0.00 36.95 4.30
1694 1805 9.498176 TCAACTATTTTTAGGACAAGTACTTCC 57.502 33.333 4.77 5.23 0.00 3.46
1700 1811 9.981114 CCATTTTCAACTATTTTTAGGACAAGT 57.019 29.630 0.00 0.00 0.00 3.16
1746 1857 8.822805 TGTCCTAAAATGGTTGTATCTAGACTT 58.177 33.333 0.00 0.00 0.00 3.01
1747 1858 8.375493 TGTCCTAAAATGGTTGTATCTAGACT 57.625 34.615 0.00 0.00 0.00 3.24
1748 1859 9.444600 TTTGTCCTAAAATGGTTGTATCTAGAC 57.555 33.333 0.00 0.00 0.00 2.59
1756 1867 9.418045 CGAAAATATTTGTCCTAAAATGGTTGT 57.582 29.630 0.39 0.00 32.16 3.32
1757 1868 8.868916 CCGAAAATATTTGTCCTAAAATGGTTG 58.131 33.333 0.39 0.00 32.16 3.77
1758 1869 8.808092 TCCGAAAATATTTGTCCTAAAATGGTT 58.192 29.630 0.39 0.00 32.16 3.67
1759 1870 8.248253 GTCCGAAAATATTTGTCCTAAAATGGT 58.752 33.333 0.39 0.00 32.16 3.55
1760 1871 7.431084 CGTCCGAAAATATTTGTCCTAAAATGG 59.569 37.037 0.39 0.00 32.16 3.16
1761 1872 7.431084 CCGTCCGAAAATATTTGTCCTAAAATG 59.569 37.037 0.39 0.00 32.16 2.32
1762 1873 7.337436 TCCGTCCGAAAATATTTGTCCTAAAAT 59.663 33.333 0.39 0.00 34.24 1.82
1763 1874 6.654161 TCCGTCCGAAAATATTTGTCCTAAAA 59.346 34.615 0.39 0.00 0.00 1.52
1764 1875 6.171921 TCCGTCCGAAAATATTTGTCCTAAA 58.828 36.000 0.39 0.00 0.00 1.85
1765 1876 5.732633 TCCGTCCGAAAATATTTGTCCTAA 58.267 37.500 0.39 0.00 0.00 2.69
1766 1877 5.341872 TCCGTCCGAAAATATTTGTCCTA 57.658 39.130 0.39 0.00 0.00 2.94
1767 1878 4.189231 CTCCGTCCGAAAATATTTGTCCT 58.811 43.478 0.39 0.00 0.00 3.85
1768 1879 3.311596 CCTCCGTCCGAAAATATTTGTCC 59.688 47.826 0.39 0.00 0.00 4.02
1769 1880 3.311596 CCCTCCGTCCGAAAATATTTGTC 59.688 47.826 0.39 1.54 0.00 3.18
1770 1881 3.054948 TCCCTCCGTCCGAAAATATTTGT 60.055 43.478 0.39 0.00 0.00 2.83
1771 1882 3.537580 TCCCTCCGTCCGAAAATATTTG 58.462 45.455 0.39 0.00 0.00 2.32
1772 1883 3.199289 ACTCCCTCCGTCCGAAAATATTT 59.801 43.478 0.00 0.00 0.00 1.40
1773 1884 2.770232 ACTCCCTCCGTCCGAAAATATT 59.230 45.455 0.00 0.00 0.00 1.28
1774 1885 2.395619 ACTCCCTCCGTCCGAAAATAT 58.604 47.619 0.00 0.00 0.00 1.28
1775 1886 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
1776 1887 1.755380 CTACTCCCTCCGTCCGAAAAT 59.245 52.381 0.00 0.00 0.00 1.82
1777 1888 1.180029 CTACTCCCTCCGTCCGAAAA 58.820 55.000 0.00 0.00 0.00 2.29
1778 1889 0.682209 CCTACTCCCTCCGTCCGAAA 60.682 60.000 0.00 0.00 0.00 3.46
1779 1890 1.077212 CCTACTCCCTCCGTCCGAA 60.077 63.158 0.00 0.00 0.00 4.30
1780 1891 2.304056 ACCTACTCCCTCCGTCCGA 61.304 63.158 0.00 0.00 0.00 4.55
1781 1892 2.119655 CACCTACTCCCTCCGTCCG 61.120 68.421 0.00 0.00 0.00 4.79
1782 1893 2.424733 GCACCTACTCCCTCCGTCC 61.425 68.421 0.00 0.00 0.00 4.79
1783 1894 2.424733 GGCACCTACTCCCTCCGTC 61.425 68.421 0.00 0.00 0.00 4.79
1784 1895 2.363925 GGCACCTACTCCCTCCGT 60.364 66.667 0.00 0.00 0.00 4.69
1814 1925 2.421923 AATGGTGGTGCAGCTGAGCT 62.422 55.000 20.43 0.00 40.77 4.09
1815 1926 1.930908 GAATGGTGGTGCAGCTGAGC 61.931 60.000 20.43 12.78 32.61 4.26
1816 1927 0.322277 AGAATGGTGGTGCAGCTGAG 60.322 55.000 20.43 0.00 32.61 3.35
1847 1971 6.126940 ACCACAACAAGCATGATCTACTAGAT 60.127 38.462 0.00 0.00 37.73 1.98
1871 1995 8.610035 GCCCAGATATTTGTAACTTGTAAGTAC 58.390 37.037 0.00 0.00 38.57 2.73
1876 2000 5.442391 GGGCCCAGATATTTGTAACTTGTA 58.558 41.667 19.95 0.00 0.00 2.41
1910 2036 3.149196 AGGTGGTCAGTATGTTTTGCAG 58.851 45.455 0.00 0.00 37.40 4.41
1926 2052 4.697514 CATGTACTTATCAGGTGAGGTGG 58.302 47.826 0.00 0.00 0.00 4.61
1927 2053 4.122776 GCATGTACTTATCAGGTGAGGTG 58.877 47.826 0.00 0.00 0.00 4.00
1928 2054 3.181475 CGCATGTACTTATCAGGTGAGGT 60.181 47.826 0.00 0.00 30.32 3.85
1929 2055 3.384668 CGCATGTACTTATCAGGTGAGG 58.615 50.000 0.00 0.00 30.32 3.86
1930 2056 2.797156 GCGCATGTACTTATCAGGTGAG 59.203 50.000 0.30 0.00 30.32 3.51
1931 2057 2.430694 AGCGCATGTACTTATCAGGTGA 59.569 45.455 11.47 0.00 30.32 4.02
1950 2076 7.916450 CAGATAAGACACTGTACTTTACCTAGC 59.084 40.741 0.00 0.00 0.00 3.42
1963 2089 3.057526 TCACCGTGACAGATAAGACACTG 60.058 47.826 0.00 0.00 39.65 3.66
1977 2103 2.102109 TTTAGCCGCCTTCACCGTGA 62.102 55.000 0.00 0.00 0.00 4.35
2011 2137 8.993121 GTAGAAAAGTCATCAATCAACAAGAGA 58.007 33.333 0.00 0.00 0.00 3.10
2012 2138 8.997323 AGTAGAAAAGTCATCAATCAACAAGAG 58.003 33.333 0.00 0.00 0.00 2.85
2013 2139 8.908786 AGTAGAAAAGTCATCAATCAACAAGA 57.091 30.769 0.00 0.00 0.00 3.02
2014 2140 8.777413 TGAGTAGAAAAGTCATCAATCAACAAG 58.223 33.333 0.00 0.00 32.37 3.16
2016 2142 7.095060 GCTGAGTAGAAAAGTCATCAATCAACA 60.095 37.037 0.00 0.00 36.93 3.33
2017 2143 7.095060 TGCTGAGTAGAAAAGTCATCAATCAAC 60.095 37.037 0.00 0.00 36.93 3.18
2018 2144 6.936335 TGCTGAGTAGAAAAGTCATCAATCAA 59.064 34.615 0.00 0.00 36.93 2.57
2019 2145 6.466812 TGCTGAGTAGAAAAGTCATCAATCA 58.533 36.000 0.00 0.00 36.93 2.57
2020 2146 6.974932 TGCTGAGTAGAAAAGTCATCAATC 57.025 37.500 0.00 0.00 36.93 2.67
2021 2147 7.108194 TCATGCTGAGTAGAAAAGTCATCAAT 58.892 34.615 0.00 0.00 37.25 2.57
2080 2206 1.424403 TAACAATCAGTGGTCGCGTG 58.576 50.000 5.77 0.00 0.00 5.34
2082 2208 2.720590 CGTTTAACAATCAGTGGTCGCG 60.721 50.000 0.00 0.00 0.00 5.87
2187 2316 6.796426 TGCTGTTCAGCTATAAGTAGTAGTG 58.204 40.000 22.44 0.00 35.49 2.74
2196 2325 4.905429 TGGTTTCTGCTGTTCAGCTATAA 58.095 39.130 22.44 12.56 42.56 0.98
2217 2346 7.386299 GTGCAATTAACTCCTATCAGAGGTATG 59.614 40.741 0.00 0.00 46.76 2.39
2219 2348 6.382859 TGTGCAATTAACTCCTATCAGAGGTA 59.617 38.462 0.00 0.00 46.76 3.08
2228 2357 6.014070 TGGTACTTCTGTGCAATTAACTCCTA 60.014 38.462 0.00 0.00 0.00 2.94
2229 2358 5.221843 TGGTACTTCTGTGCAATTAACTCCT 60.222 40.000 0.00 0.00 0.00 3.69
2230 2359 5.001232 TGGTACTTCTGTGCAATTAACTCC 58.999 41.667 0.00 0.00 0.00 3.85
2231 2360 6.743575 ATGGTACTTCTGTGCAATTAACTC 57.256 37.500 0.00 0.00 0.00 3.01
2232 2361 8.807948 ATTATGGTACTTCTGTGCAATTAACT 57.192 30.769 0.00 0.00 0.00 2.24
2233 2362 9.503427 GAATTATGGTACTTCTGTGCAATTAAC 57.497 33.333 0.00 0.00 0.00 2.01
2234 2363 8.394877 CGAATTATGGTACTTCTGTGCAATTAA 58.605 33.333 0.00 0.00 0.00 1.40
2235 2364 7.915508 CGAATTATGGTACTTCTGTGCAATTA 58.084 34.615 0.00 0.00 0.00 1.40
2236 2365 6.785191 CGAATTATGGTACTTCTGTGCAATT 58.215 36.000 0.00 0.00 0.00 2.32
2237 2366 6.363577 CGAATTATGGTACTTCTGTGCAAT 57.636 37.500 0.00 0.00 0.00 3.56
2238 2367 5.794687 CGAATTATGGTACTTCTGTGCAA 57.205 39.130 0.00 0.00 0.00 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.