Multiple sequence alignment - TraesCS2D01G514900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G514900 chr2D 100.000 2962 0 0 1 2962 606632354 606635315 0.000000e+00 5470
1 TraesCS2D01G514900 chr2B 92.331 1630 108 10 1 1619 738135841 738137464 0.000000e+00 2302
2 TraesCS2D01G514900 chr2B 90.190 632 40 13 2264 2879 738137687 738138312 0.000000e+00 804
3 TraesCS2D01G514900 chr2B 92.969 128 6 1 1669 1796 738137465 738137589 1.810000e-42 183
4 TraesCS2D01G514900 chr2A 93.144 773 36 7 1031 1796 738180351 738181113 0.000000e+00 1118
5 TraesCS2D01G514900 chr2A 91.001 789 53 9 2178 2962 738181107 738181881 0.000000e+00 1048
6 TraesCS2D01G514900 chr2A 77.399 323 54 14 1851 2164 718105915 718106227 1.090000e-39 174
7 TraesCS2D01G514900 chr2A 86.614 127 9 6 779 901 80889814 80889692 1.850000e-27 134
8 TraesCS2D01G514900 chr3B 91.228 684 39 4 1113 1796 173246949 173247611 0.000000e+00 911
9 TraesCS2D01G514900 chr3B 92.466 146 7 1 1607 1752 173248663 173248804 3.870000e-49 206
10 TraesCS2D01G514900 chr4A 92.351 353 19 4 1827 2174 550466202 550466551 2.050000e-136 496
11 TraesCS2D01G514900 chr3A 91.389 360 25 3 1819 2175 82877955 82878311 3.430000e-134 488
12 TraesCS2D01G514900 chr3A 88.608 158 12 5 746 901 468731254 468731101 1.400000e-43 187
13 TraesCS2D01G514900 chr3D 79.379 354 68 5 1826 2177 594972564 594972914 8.200000e-61 244
14 TraesCS2D01G514900 chr1A 80.183 328 58 5 1851 2177 29045346 29045667 3.820000e-59 239
15 TraesCS2D01G514900 chr1A 93.939 66 2 2 757 821 554011581 554011517 6.760000e-17 99
16 TraesCS2D01G514900 chr5A 78.788 363 55 18 1837 2186 581923515 581923162 1.070000e-54 224
17 TraesCS2D01G514900 chr5A 86.275 153 15 6 754 901 599644612 599644763 8.500000e-36 161
18 TraesCS2D01G514900 chr5B 77.429 350 56 17 1826 2164 471858457 471858120 1.400000e-43 187
19 TraesCS2D01G514900 chr7A 77.329 322 56 11 1851 2164 654781881 654782193 1.090000e-39 174
20 TraesCS2D01G514900 chr6D 77.090 323 55 14 1851 2164 463861687 463861999 5.080000e-38 169
21 TraesCS2D01G514900 chr6D 88.652 141 11 4 727 863 363008938 363009077 1.830000e-37 167
22 TraesCS2D01G514900 chr5D 79.866 149 21 8 223 366 380486905 380487049 1.880000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G514900 chr2D 606632354 606635315 2961 False 5470.000000 5470 100.0000 1 2962 1 chr2D.!!$F1 2961
1 TraesCS2D01G514900 chr2B 738135841 738138312 2471 False 1096.333333 2302 91.8300 1 2879 3 chr2B.!!$F1 2878
2 TraesCS2D01G514900 chr2A 738180351 738181881 1530 False 1083.000000 1118 92.0725 1031 2962 2 chr2A.!!$F2 1931
3 TraesCS2D01G514900 chr3B 173246949 173248804 1855 False 558.500000 911 91.8470 1113 1796 2 chr3B.!!$F1 683


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
748 759 0.032416 ACAGCTACATCTACGGGGGT 60.032 55.0 0.0 0.0 0.0 4.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2149 2170 0.038599 TGTGGCTACTCTCGGGTGTA 59.961 55.0 0.64 0.0 0.0 2.9 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 5.064707 ACGACAATATAACGCTTTTGCTGAT 59.935 36.000 0.00 0.00 44.80 2.90
27 28 6.435430 ACAATATAACGCTTTTGCTGATCA 57.565 33.333 0.00 0.00 44.80 2.92
31 32 2.642139 ACGCTTTTGCTGATCAATGG 57.358 45.000 0.00 0.00 44.80 3.16
34 35 2.690786 GCTTTTGCTGATCAATGGCAA 58.309 42.857 14.82 14.82 42.97 4.52
52 53 4.142513 TGGCAATTTTTGTTTGGTGCTTTC 60.143 37.500 0.00 0.00 0.00 2.62
63 64 5.752955 TGTTTGGTGCTTTCTTATTTTGAGC 59.247 36.000 0.00 0.00 0.00 4.26
88 89 8.853345 GCATCATGAAAATTAGTTTGTGTGTAG 58.147 33.333 0.00 0.00 0.00 2.74
99 100 4.279169 AGTTTGTGTGTAGCATGCTGATTT 59.721 37.500 30.42 5.99 0.00 2.17
115 116 6.228995 TGCTGATTTTACATCATTTTTGGCA 58.771 32.000 0.00 0.00 0.00 4.92
227 232 0.521291 CGTGTCCATCGTGGCAAATT 59.479 50.000 0.00 0.00 37.47 1.82
280 285 9.209175 ACTTTATTGATCTCTCGCCATTAATAC 57.791 33.333 0.00 0.00 0.00 1.89
316 321 7.148086 GGACCTTGGCAATTTTTCTTTCTTTTT 60.148 33.333 0.00 0.00 0.00 1.94
341 346 6.989169 TGCAACATGGCAAACTTACTATTTTT 59.011 30.769 0.00 0.00 41.65 1.94
384 389 8.815565 TTTAGTTCAGGTTCATGGCATATTTA 57.184 30.769 0.00 0.00 0.00 1.40
389 394 9.034544 GTTCAGGTTCATGGCATATTTATTTTC 57.965 33.333 0.00 0.00 0.00 2.29
393 398 8.761689 AGGTTCATGGCATATTTATTTTCTGTT 58.238 29.630 0.00 0.00 0.00 3.16
465 471 7.667043 TTCTGTGCTTTTCATTTACGTCTAT 57.333 32.000 0.00 0.00 0.00 1.98
466 472 7.667043 TCTGTGCTTTTCATTTACGTCTATT 57.333 32.000 0.00 0.00 0.00 1.73
467 473 7.518161 TCTGTGCTTTTCATTTACGTCTATTG 58.482 34.615 0.00 0.00 0.00 1.90
483 489 2.242882 ATTGAAGAGGCCCAGCAAAT 57.757 45.000 0.00 0.00 0.00 2.32
497 503 1.272212 AGCAAATTGGGTTGTTAGGCG 59.728 47.619 0.00 0.00 0.00 5.52
509 515 4.933400 GGTTGTTAGGCGTTTTCTAGATCA 59.067 41.667 0.00 0.00 0.00 2.92
514 522 1.261619 GGCGTTTTCTAGATCATGCCG 59.738 52.381 15.71 5.23 0.00 5.69
630 638 4.778143 CGTTCTGGCCCTTCCCCG 62.778 72.222 0.00 0.00 0.00 5.73
638 646 4.091939 CCCTTCCCCGGACCGAAC 62.092 72.222 17.49 0.00 0.00 3.95
639 647 4.446413 CCTTCCCCGGACCGAACG 62.446 72.222 17.49 1.63 0.00 3.95
640 648 3.688159 CTTCCCCGGACCGAACGT 61.688 66.667 17.49 0.00 0.00 3.99
641 649 3.230522 CTTCCCCGGACCGAACGTT 62.231 63.158 17.49 0.00 0.00 3.99
730 741 4.718858 TGTGTGTATTGTTAACGAGCAC 57.281 40.909 18.91 18.91 0.00 4.40
731 742 4.120589 TGTGTGTATTGTTAACGAGCACA 58.879 39.130 22.14 22.14 33.71 4.57
739 750 3.250744 TGTTAACGAGCACAGCTACATC 58.749 45.455 0.26 0.00 39.88 3.06
742 753 2.853731 ACGAGCACAGCTACATCTAC 57.146 50.000 0.00 0.00 39.88 2.59
748 759 0.032416 ACAGCTACATCTACGGGGGT 60.032 55.000 0.00 0.00 0.00 4.95
752 763 2.093128 AGCTACATCTACGGGGGTTTTG 60.093 50.000 0.00 0.00 0.00 2.44
755 766 1.005450 ACATCTACGGGGGTTTTGCAT 59.995 47.619 0.00 0.00 0.00 3.96
759 770 0.402504 TACGGGGGTTTTGCATGAGT 59.597 50.000 0.00 0.00 0.00 3.41
783 794 3.483869 GGCTAGGCTGAGGTGGGG 61.484 72.222 9.46 0.00 0.00 4.96
787 798 0.325296 CTAGGCTGAGGTGGGGTGTA 60.325 60.000 0.00 0.00 0.00 2.90
795 806 2.025416 TGAGGTGGGGTGTATTGATTGG 60.025 50.000 0.00 0.00 0.00 3.16
809 820 9.906660 GTGTATTGATTGGTTGTTAAGATGAAA 57.093 29.630 0.00 0.00 0.00 2.69
814 825 4.839668 TGGTTGTTAAGATGAAAACGGG 57.160 40.909 0.00 0.00 0.00 5.28
819 830 1.828979 TAAGATGAAAACGGGCCCAC 58.171 50.000 24.92 7.77 0.00 4.61
864 875 3.277416 AGTGAGGGGAGAAGGTTAGTT 57.723 47.619 0.00 0.00 0.00 2.24
921 932 2.073816 GTGTGTATCGTTTGACCTGGG 58.926 52.381 0.00 0.00 0.00 4.45
958 969 8.275015 ACGAAATGACACAATGATAACCAATA 57.725 30.769 0.00 0.00 0.00 1.90
960 971 7.643764 CGAAATGACACAATGATAACCAATACC 59.356 37.037 0.00 0.00 0.00 2.73
991 1002 4.347453 GCAGTGCAAGGCAACCGG 62.347 66.667 11.09 0.00 41.47 5.28
1008 1019 1.296056 CGGCCTTACCACACTTTCCG 61.296 60.000 0.00 0.00 39.03 4.30
1021 1032 5.390885 CCACACTTTCCGTGAATGTAGATTG 60.391 44.000 0.00 0.00 46.81 2.67
1037 1048 7.812690 TGTAGATTGCATTGCTTGATCTAAT 57.187 32.000 20.86 8.80 32.44 1.73
1055 1066 2.260316 ATAACCTAGACCCCCGCCCA 62.260 60.000 0.00 0.00 0.00 5.36
1128 1145 1.228800 AGGAGGGTTCGTCGAAGGT 60.229 57.895 8.18 0.00 0.00 3.50
1294 1311 1.139058 GTCCGCATCACCAGGAGTAAT 59.861 52.381 0.00 0.00 34.29 1.89
1411 1431 1.004918 CGCCCGGGATCAGGATAAC 60.005 63.158 29.31 0.00 0.00 1.89
1531 1551 2.582498 GAGGCGCGCGTGACTTAT 60.582 61.111 31.36 7.66 0.00 1.73
1561 1581 1.538075 GAGCGTTTCCCGAAATTCCAA 59.462 47.619 0.00 0.00 39.56 3.53
1588 1608 1.080093 CCGCAGCGAGTACCTCAAA 60.080 57.895 18.75 0.00 0.00 2.69
1626 1646 3.676291 TGACAATGACATCCTCGTTGA 57.324 42.857 8.86 0.00 45.54 3.18
1661 1681 0.106967 GGCATGGGAGGAGGAACTTC 60.107 60.000 0.00 0.00 41.55 3.01
1692 1713 7.824779 AGACTTAGACGCAGGAAGAATTTAATT 59.175 33.333 0.00 0.00 0.00 1.40
1733 1754 6.036191 CCATGCATGAGATAGAAAGATCATCG 59.964 42.308 28.31 0.38 30.09 3.84
1753 1774 2.094182 CGTACCTGTGTTAGCCATCTGT 60.094 50.000 0.00 0.00 0.00 3.41
1773 1794 6.175471 TCTGTCTGTGATGATGCAGTTTAAT 58.825 36.000 0.00 0.00 34.57 1.40
1775 1796 7.175467 TCTGTCTGTGATGATGCAGTTTAATTT 59.825 33.333 0.00 0.00 34.57 1.82
1776 1797 7.660112 TGTCTGTGATGATGCAGTTTAATTTT 58.340 30.769 0.00 0.00 34.57 1.82
1777 1798 8.791675 TGTCTGTGATGATGCAGTTTAATTTTA 58.208 29.630 0.00 0.00 34.57 1.52
1799 1820 8.568676 TTTATTATCCATGGTGTTTCTTTCGA 57.431 30.769 12.58 0.00 0.00 3.71
1800 1821 6.683974 ATTATCCATGGTGTTTCTTTCGAG 57.316 37.500 12.58 0.00 0.00 4.04
1801 1822 3.762407 TCCATGGTGTTTCTTTCGAGA 57.238 42.857 12.58 0.00 0.00 4.04
1802 1823 3.399330 TCCATGGTGTTTCTTTCGAGAC 58.601 45.455 12.58 0.00 0.00 3.36
1803 1824 3.071023 TCCATGGTGTTTCTTTCGAGACT 59.929 43.478 12.58 0.00 0.00 3.24
1804 1825 3.187227 CCATGGTGTTTCTTTCGAGACTG 59.813 47.826 2.57 0.00 0.00 3.51
1805 1826 2.833794 TGGTGTTTCTTTCGAGACTGG 58.166 47.619 0.00 0.00 0.00 4.00
1806 1827 2.432874 TGGTGTTTCTTTCGAGACTGGA 59.567 45.455 0.00 0.00 0.00 3.86
1807 1828 3.071023 TGGTGTTTCTTTCGAGACTGGAT 59.929 43.478 0.00 0.00 0.00 3.41
1808 1829 4.065789 GGTGTTTCTTTCGAGACTGGATT 58.934 43.478 0.00 0.00 0.00 3.01
1809 1830 4.515567 GGTGTTTCTTTCGAGACTGGATTT 59.484 41.667 0.00 0.00 0.00 2.17
1810 1831 5.008712 GGTGTTTCTTTCGAGACTGGATTTT 59.991 40.000 0.00 0.00 0.00 1.82
1811 1832 6.204108 GGTGTTTCTTTCGAGACTGGATTTTA 59.796 38.462 0.00 0.00 0.00 1.52
1812 1833 7.094762 GGTGTTTCTTTCGAGACTGGATTTTAT 60.095 37.037 0.00 0.00 0.00 1.40
1813 1834 8.932791 GTGTTTCTTTCGAGACTGGATTTTATA 58.067 33.333 0.00 0.00 0.00 0.98
1814 1835 8.932791 TGTTTCTTTCGAGACTGGATTTTATAC 58.067 33.333 0.00 0.00 0.00 1.47
1815 1836 9.152595 GTTTCTTTCGAGACTGGATTTTATACT 57.847 33.333 0.00 0.00 0.00 2.12
1816 1837 8.703604 TTCTTTCGAGACTGGATTTTATACTG 57.296 34.615 0.00 0.00 0.00 2.74
1817 1838 7.837863 TCTTTCGAGACTGGATTTTATACTGT 58.162 34.615 0.00 0.00 0.00 3.55
1818 1839 8.963725 TCTTTCGAGACTGGATTTTATACTGTA 58.036 33.333 0.00 0.00 0.00 2.74
1819 1840 9.582431 CTTTCGAGACTGGATTTTATACTGTAA 57.418 33.333 0.00 0.00 0.00 2.41
1820 1841 8.922058 TTCGAGACTGGATTTTATACTGTAAC 57.078 34.615 0.00 0.00 0.00 2.50
1821 1842 8.289939 TCGAGACTGGATTTTATACTGTAACT 57.710 34.615 0.00 0.00 0.00 2.24
1822 1843 8.746530 TCGAGACTGGATTTTATACTGTAACTT 58.253 33.333 0.00 0.00 0.00 2.66
1823 1844 9.367444 CGAGACTGGATTTTATACTGTAACTTT 57.633 33.333 0.00 0.00 0.00 2.66
1825 1846 9.449719 AGACTGGATTTTATACTGTAACTTTGG 57.550 33.333 0.00 0.00 0.00 3.28
1826 1847 9.444600 GACTGGATTTTATACTGTAACTTTGGA 57.555 33.333 0.00 0.00 0.00 3.53
1827 1848 9.802039 ACTGGATTTTATACTGTAACTTTGGAA 57.198 29.630 0.00 0.00 0.00 3.53
1862 1883 8.000285 TCGAACTAACTCGAAAAATCTGTAAC 58.000 34.615 0.00 0.00 44.49 2.50
1863 1884 7.864379 TCGAACTAACTCGAAAAATCTGTAACT 59.136 33.333 0.00 0.00 44.49 2.24
1864 1885 8.485591 CGAACTAACTCGAAAAATCTGTAACTT 58.514 33.333 0.00 0.00 41.44 2.66
1866 1887 9.931210 AACTAACTCGAAAAATCTGTAACTTTG 57.069 29.630 0.00 0.00 0.00 2.77
1867 1888 9.321562 ACTAACTCGAAAAATCTGTAACTTTGA 57.678 29.630 0.00 0.00 0.00 2.69
1868 1889 9.798885 CTAACTCGAAAAATCTGTAACTTTGAG 57.201 33.333 0.00 0.00 0.00 3.02
1869 1890 8.433421 AACTCGAAAAATCTGTAACTTTGAGA 57.567 30.769 4.73 0.00 0.00 3.27
1870 1891 7.852516 ACTCGAAAAATCTGTAACTTTGAGAC 58.147 34.615 4.73 0.00 0.00 3.36
1871 1892 7.494625 ACTCGAAAAATCTGTAACTTTGAGACA 59.505 33.333 4.73 0.00 0.00 3.41
1872 1893 8.378172 TCGAAAAATCTGTAACTTTGAGACAT 57.622 30.769 0.00 0.00 0.00 3.06
1873 1894 8.495949 TCGAAAAATCTGTAACTTTGAGACATC 58.504 33.333 0.00 0.00 0.00 3.06
1874 1895 8.282592 CGAAAAATCTGTAACTTTGAGACATCA 58.717 33.333 0.00 0.00 0.00 3.07
1875 1896 9.950680 GAAAAATCTGTAACTTTGAGACATCAA 57.049 29.630 0.00 0.00 43.72 2.57
1889 1910 7.514784 TGAGACATCAAACTTGATCAAATGT 57.485 32.000 18.25 18.25 45.62 2.71
1890 1911 7.944061 TGAGACATCAAACTTGATCAAATGTT 58.056 30.769 18.90 13.51 45.62 2.71
1891 1912 8.077991 TGAGACATCAAACTTGATCAAATGTTC 58.922 33.333 18.90 17.17 45.62 3.18
1892 1913 7.080099 AGACATCAAACTTGATCAAATGTTCG 58.920 34.615 18.90 7.81 45.62 3.95
1893 1914 6.969366 ACATCAAACTTGATCAAATGTTCGA 58.031 32.000 14.25 9.41 45.62 3.71
1894 1915 7.080099 ACATCAAACTTGATCAAATGTTCGAG 58.920 34.615 14.25 8.27 45.62 4.04
1895 1916 5.451908 TCAAACTTGATCAAATGTTCGAGC 58.548 37.500 9.88 0.00 31.46 5.03
1896 1917 5.239306 TCAAACTTGATCAAATGTTCGAGCT 59.761 36.000 9.88 0.00 31.46 4.09
1897 1918 6.426633 TCAAACTTGATCAAATGTTCGAGCTA 59.573 34.615 9.88 0.00 31.46 3.32
1898 1919 6.801539 AACTTGATCAAATGTTCGAGCTAA 57.198 33.333 9.88 0.00 31.46 3.09
1899 1920 6.170675 ACTTGATCAAATGTTCGAGCTAAC 57.829 37.500 9.88 0.00 31.46 2.34
1900 1921 5.934625 ACTTGATCAAATGTTCGAGCTAACT 59.065 36.000 9.88 0.00 31.46 2.24
1901 1922 5.784750 TGATCAAATGTTCGAGCTAACTG 57.215 39.130 0.00 0.00 0.00 3.16
1902 1923 4.631377 TGATCAAATGTTCGAGCTAACTGG 59.369 41.667 0.00 0.00 0.00 4.00
1903 1924 2.742053 TCAAATGTTCGAGCTAACTGGC 59.258 45.455 0.00 0.00 0.00 4.85
1904 1925 2.472695 AATGTTCGAGCTAACTGGCA 57.527 45.000 0.00 0.00 34.17 4.92
1905 1926 2.472695 ATGTTCGAGCTAACTGGCAA 57.527 45.000 0.00 0.00 34.17 4.52
1906 1927 2.248280 TGTTCGAGCTAACTGGCAAA 57.752 45.000 0.00 0.00 34.17 3.68
1907 1928 2.778299 TGTTCGAGCTAACTGGCAAAT 58.222 42.857 0.00 0.00 34.17 2.32
1908 1929 2.483877 TGTTCGAGCTAACTGGCAAATG 59.516 45.455 0.00 0.00 34.17 2.32
1909 1930 2.472695 TCGAGCTAACTGGCAAATGT 57.527 45.000 0.00 0.00 34.17 2.71
1910 1931 2.346803 TCGAGCTAACTGGCAAATGTC 58.653 47.619 0.00 0.00 34.17 3.06
1911 1932 2.076100 CGAGCTAACTGGCAAATGTCA 58.924 47.619 0.00 0.00 34.17 3.58
1921 1942 2.798976 GCAAATGTCAGCCAGAAACA 57.201 45.000 0.00 0.00 0.00 2.83
1922 1943 3.096489 GCAAATGTCAGCCAGAAACAA 57.904 42.857 0.00 0.00 0.00 2.83
1923 1944 2.796593 GCAAATGTCAGCCAGAAACAAC 59.203 45.455 0.00 0.00 0.00 3.32
1924 1945 3.737663 GCAAATGTCAGCCAGAAACAACA 60.738 43.478 0.00 0.00 0.00 3.33
1925 1946 4.624015 CAAATGTCAGCCAGAAACAACAT 58.376 39.130 0.00 0.00 0.00 2.71
1926 1947 4.510038 AATGTCAGCCAGAAACAACATC 57.490 40.909 0.00 0.00 0.00 3.06
1927 1948 2.929641 TGTCAGCCAGAAACAACATCA 58.070 42.857 0.00 0.00 0.00 3.07
1928 1949 2.880268 TGTCAGCCAGAAACAACATCAG 59.120 45.455 0.00 0.00 0.00 2.90
1929 1950 3.141398 GTCAGCCAGAAACAACATCAGA 58.859 45.455 0.00 0.00 0.00 3.27
1930 1951 3.188048 GTCAGCCAGAAACAACATCAGAG 59.812 47.826 0.00 0.00 0.00 3.35
1931 1952 2.486982 CAGCCAGAAACAACATCAGAGG 59.513 50.000 0.00 0.00 0.00 3.69
1932 1953 2.373169 AGCCAGAAACAACATCAGAGGA 59.627 45.455 0.00 0.00 0.00 3.71
1933 1954 2.746362 GCCAGAAACAACATCAGAGGAG 59.254 50.000 0.00 0.00 0.00 3.69
1934 1955 2.746362 CCAGAAACAACATCAGAGGAGC 59.254 50.000 0.00 0.00 0.00 4.70
1935 1956 3.558746 CCAGAAACAACATCAGAGGAGCT 60.559 47.826 0.00 0.00 0.00 4.09
1936 1957 3.683822 CAGAAACAACATCAGAGGAGCTC 59.316 47.826 4.71 4.71 0.00 4.09
1937 1958 3.582208 AGAAACAACATCAGAGGAGCTCT 59.418 43.478 14.64 0.00 42.11 4.09
1938 1959 3.608316 AACAACATCAGAGGAGCTCTC 57.392 47.619 14.64 9.23 38.99 3.20
1939 1960 2.533916 ACAACATCAGAGGAGCTCTCA 58.466 47.619 14.64 0.00 44.81 3.27
1940 1961 2.233431 ACAACATCAGAGGAGCTCTCAC 59.767 50.000 14.64 5.51 44.81 3.51
1941 1962 1.484038 ACATCAGAGGAGCTCTCACC 58.516 55.000 14.64 0.00 44.81 4.02
1942 1963 1.272928 ACATCAGAGGAGCTCTCACCA 60.273 52.381 14.64 0.00 44.81 4.17
1943 1964 1.829849 CATCAGAGGAGCTCTCACCAA 59.170 52.381 14.64 0.00 44.81 3.67
1944 1965 2.015456 TCAGAGGAGCTCTCACCAAA 57.985 50.000 14.64 0.00 44.81 3.28
1945 1966 2.329267 TCAGAGGAGCTCTCACCAAAA 58.671 47.619 14.64 0.00 44.81 2.44
1946 1967 2.705658 TCAGAGGAGCTCTCACCAAAAA 59.294 45.455 14.64 0.00 44.81 1.94
1973 1994 9.657419 AGACAAAATCAATCTTCAAAGTTTTGT 57.343 25.926 15.34 15.34 45.46 2.83
1974 1995 9.693157 GACAAAATCAATCTTCAAAGTTTTGTG 57.307 29.630 18.20 8.84 43.89 3.33
1975 1996 8.177013 ACAAAATCAATCTTCAAAGTTTTGTGC 58.823 29.630 14.94 0.00 42.92 4.57
1976 1997 7.846644 AAATCAATCTTCAAAGTTTTGTGCA 57.153 28.000 4.67 0.00 39.18 4.57
1977 1998 6.833342 ATCAATCTTCAAAGTTTTGTGCAC 57.167 33.333 10.75 10.75 39.18 4.57
1978 1999 5.964758 TCAATCTTCAAAGTTTTGTGCACT 58.035 33.333 19.41 0.00 39.18 4.40
1979 2000 5.806502 TCAATCTTCAAAGTTTTGTGCACTG 59.193 36.000 19.41 6.01 39.18 3.66
1980 2001 4.782019 TCTTCAAAGTTTTGTGCACTGT 57.218 36.364 19.41 0.00 39.18 3.55
1981 2002 5.132897 TCTTCAAAGTTTTGTGCACTGTT 57.867 34.783 19.41 1.28 39.18 3.16
1982 2003 5.537188 TCTTCAAAGTTTTGTGCACTGTTT 58.463 33.333 19.41 7.42 39.18 2.83
1983 2004 5.404968 TCTTCAAAGTTTTGTGCACTGTTTG 59.595 36.000 19.41 17.71 39.18 2.93
1984 2005 4.876125 TCAAAGTTTTGTGCACTGTTTGA 58.124 34.783 19.41 19.41 39.18 2.69
1985 2006 4.922692 TCAAAGTTTTGTGCACTGTTTGAG 59.077 37.500 19.41 2.35 39.18 3.02
1986 2007 4.782019 AAGTTTTGTGCACTGTTTGAGA 57.218 36.364 19.41 0.00 0.00 3.27
1987 2008 4.782019 AGTTTTGTGCACTGTTTGAGAA 57.218 36.364 19.41 0.00 0.00 2.87
1988 2009 4.737054 AGTTTTGTGCACTGTTTGAGAAG 58.263 39.130 19.41 0.00 0.00 2.85
1989 2010 4.218417 AGTTTTGTGCACTGTTTGAGAAGT 59.782 37.500 19.41 0.00 0.00 3.01
1990 2011 3.763097 TTGTGCACTGTTTGAGAAGTG 57.237 42.857 19.41 0.00 45.37 3.16
1991 2012 2.984562 TGTGCACTGTTTGAGAAGTGA 58.015 42.857 19.41 0.00 45.43 3.41
1992 2013 3.544684 TGTGCACTGTTTGAGAAGTGAT 58.455 40.909 19.41 0.00 45.43 3.06
1993 2014 3.947196 TGTGCACTGTTTGAGAAGTGATT 59.053 39.130 19.41 0.00 45.43 2.57
1994 2015 4.398988 TGTGCACTGTTTGAGAAGTGATTT 59.601 37.500 19.41 0.00 45.43 2.17
1995 2016 5.105797 TGTGCACTGTTTGAGAAGTGATTTT 60.106 36.000 19.41 0.00 45.43 1.82
1996 2017 5.230726 GTGCACTGTTTGAGAAGTGATTTTG 59.769 40.000 10.32 0.00 45.43 2.44
1997 2018 5.105797 TGCACTGTTTGAGAAGTGATTTTGT 60.106 36.000 6.98 0.00 45.43 2.83
1998 2019 5.807011 GCACTGTTTGAGAAGTGATTTTGTT 59.193 36.000 6.98 0.00 45.43 2.83
1999 2020 6.311200 GCACTGTTTGAGAAGTGATTTTGTTT 59.689 34.615 6.98 0.00 45.43 2.83
2000 2021 7.148590 GCACTGTTTGAGAAGTGATTTTGTTTT 60.149 33.333 6.98 0.00 45.43 2.43
2001 2022 8.711457 CACTGTTTGAGAAGTGATTTTGTTTTT 58.289 29.630 0.00 0.00 45.43 1.94
2031 2052 5.946942 TGAGAGCTCCTCATATGTTTTCT 57.053 39.130 10.93 0.00 46.38 2.52
2032 2053 6.305272 TGAGAGCTCCTCATATGTTTTCTT 57.695 37.500 10.93 0.00 46.38 2.52
2033 2054 6.715280 TGAGAGCTCCTCATATGTTTTCTTT 58.285 36.000 10.93 0.00 46.38 2.52
2034 2055 6.596888 TGAGAGCTCCTCATATGTTTTCTTTG 59.403 38.462 10.93 0.00 46.38 2.77
2035 2056 5.884792 AGAGCTCCTCATATGTTTTCTTTGG 59.115 40.000 10.93 0.00 32.06 3.28
2036 2057 4.400567 AGCTCCTCATATGTTTTCTTTGGC 59.599 41.667 1.90 0.00 0.00 4.52
2037 2058 4.400567 GCTCCTCATATGTTTTCTTTGGCT 59.599 41.667 1.90 0.00 0.00 4.75
2038 2059 5.678107 GCTCCTCATATGTTTTCTTTGGCTG 60.678 44.000 1.90 0.00 0.00 4.85
2039 2060 5.569355 TCCTCATATGTTTTCTTTGGCTGA 58.431 37.500 1.90 0.00 0.00 4.26
2040 2061 6.009589 TCCTCATATGTTTTCTTTGGCTGAA 58.990 36.000 1.90 0.00 0.00 3.02
2041 2062 6.493115 TCCTCATATGTTTTCTTTGGCTGAAA 59.507 34.615 1.90 0.00 0.00 2.69
2042 2063 7.178983 TCCTCATATGTTTTCTTTGGCTGAAAT 59.821 33.333 1.90 0.00 34.04 2.17
2043 2064 7.820872 CCTCATATGTTTTCTTTGGCTGAAATT 59.179 33.333 1.90 0.00 34.04 1.82
2044 2065 9.211485 CTCATATGTTTTCTTTGGCTGAAATTT 57.789 29.630 1.90 0.00 34.04 1.82
2045 2066 9.558396 TCATATGTTTTCTTTGGCTGAAATTTT 57.442 25.926 1.90 0.00 34.04 1.82
2046 2067 9.601971 CATATGTTTTCTTTGGCTGAAATTTTG 57.398 29.630 0.00 0.00 34.04 2.44
2047 2068 5.878133 TGTTTTCTTTGGCTGAAATTTTGC 58.122 33.333 8.13 8.13 34.04 3.68
2048 2069 5.413833 TGTTTTCTTTGGCTGAAATTTTGCA 59.586 32.000 15.61 0.00 34.04 4.08
2049 2070 5.738118 TTTCTTTGGCTGAAATTTTGCAG 57.262 34.783 15.61 9.97 35.28 4.41
2050 2071 3.731089 TCTTTGGCTGAAATTTTGCAGG 58.269 40.909 15.61 5.88 32.83 4.85
2051 2072 3.387374 TCTTTGGCTGAAATTTTGCAGGA 59.613 39.130 15.61 7.47 32.83 3.86
2052 2073 3.834489 TTGGCTGAAATTTTGCAGGAA 57.166 38.095 15.61 5.80 32.83 3.36
2053 2074 3.389925 TGGCTGAAATTTTGCAGGAAG 57.610 42.857 15.61 0.00 32.83 3.46
2054 2075 2.071540 GGCTGAAATTTTGCAGGAAGC 58.928 47.619 15.61 6.89 45.96 3.86
2055 2076 2.289257 GGCTGAAATTTTGCAGGAAGCT 60.289 45.455 15.61 0.00 45.94 3.74
2056 2077 2.991866 GCTGAAATTTTGCAGGAAGCTC 59.008 45.455 8.50 0.00 45.94 4.09
2057 2078 3.553508 GCTGAAATTTTGCAGGAAGCTCA 60.554 43.478 8.50 0.00 45.94 4.26
2058 2079 4.624015 CTGAAATTTTGCAGGAAGCTCAA 58.376 39.130 0.00 0.00 45.94 3.02
2059 2080 5.021033 TGAAATTTTGCAGGAAGCTCAAA 57.979 34.783 0.00 0.00 45.94 2.69
2060 2081 4.810491 TGAAATTTTGCAGGAAGCTCAAAC 59.190 37.500 0.00 0.00 45.94 2.93
2061 2082 4.405116 AATTTTGCAGGAAGCTCAAACA 57.595 36.364 0.00 0.00 45.94 2.83
2062 2083 4.612264 ATTTTGCAGGAAGCTCAAACAT 57.388 36.364 0.00 0.00 45.94 2.71
2063 2084 4.405116 TTTTGCAGGAAGCTCAAACATT 57.595 36.364 0.00 0.00 45.94 2.71
2064 2085 4.405116 TTTGCAGGAAGCTCAAACATTT 57.595 36.364 0.00 0.00 45.94 2.32
2065 2086 3.374220 TGCAGGAAGCTCAAACATTTG 57.626 42.857 0.00 0.00 45.94 2.32
2066 2087 2.957680 TGCAGGAAGCTCAAACATTTGA 59.042 40.909 6.85 6.85 45.94 2.69
2067 2088 3.575256 TGCAGGAAGCTCAAACATTTGAT 59.425 39.130 7.48 0.00 45.26 2.57
2068 2089 4.171754 GCAGGAAGCTCAAACATTTGATC 58.828 43.478 7.48 4.02 45.26 2.92
2069 2090 4.321452 GCAGGAAGCTCAAACATTTGATCA 60.321 41.667 7.48 0.00 45.26 2.92
2070 2091 5.775686 CAGGAAGCTCAAACATTTGATCAA 58.224 37.500 3.38 3.38 45.26 2.57
2071 2092 5.862323 CAGGAAGCTCAAACATTTGATCAAG 59.138 40.000 8.41 0.49 45.26 3.02
2072 2093 5.537674 AGGAAGCTCAAACATTTGATCAAGT 59.462 36.000 8.41 2.46 45.26 3.16
2073 2094 6.041296 AGGAAGCTCAAACATTTGATCAAGTT 59.959 34.615 8.41 7.69 45.26 2.66
2074 2095 6.703165 GGAAGCTCAAACATTTGATCAAGTTT 59.297 34.615 16.15 16.15 45.26 2.66
2091 2112 8.853077 ATCAAGTTTGATGTCTCATAGTTTCA 57.147 30.769 6.56 0.00 45.63 2.69
2092 2113 8.315391 TCAAGTTTGATGTCTCATAGTTTCAG 57.685 34.615 0.00 0.00 31.01 3.02
2093 2114 8.150296 TCAAGTTTGATGTCTCATAGTTTCAGA 58.850 33.333 0.00 0.00 31.01 3.27
2094 2115 8.944029 CAAGTTTGATGTCTCATAGTTTCAGAT 58.056 33.333 0.00 0.00 0.00 2.90
2095 2116 9.512588 AAGTTTGATGTCTCATAGTTTCAGATT 57.487 29.630 0.00 0.00 0.00 2.40
2096 2117 9.512588 AGTTTGATGTCTCATAGTTTCAGATTT 57.487 29.630 0.00 0.00 0.00 2.17
2117 2138 3.953874 TTTCGAGATTGTTTGTTCGCA 57.046 38.095 0.00 0.00 33.36 5.10
2118 2139 4.481930 TTTCGAGATTGTTTGTTCGCAT 57.518 36.364 0.00 0.00 33.36 4.73
2119 2140 4.481930 TTCGAGATTGTTTGTTCGCATT 57.518 36.364 0.00 0.00 33.36 3.56
2120 2141 4.481930 TCGAGATTGTTTGTTCGCATTT 57.518 36.364 0.00 0.00 33.36 2.32
2121 2142 4.854399 TCGAGATTGTTTGTTCGCATTTT 58.146 34.783 0.00 0.00 33.36 1.82
2122 2143 5.277825 TCGAGATTGTTTGTTCGCATTTTT 58.722 33.333 0.00 0.00 33.36 1.94
2164 2185 2.354199 GTGTAGTACACCCGAGAGTAGC 59.646 54.545 20.77 0.00 43.05 3.58
2165 2186 1.946081 GTAGTACACCCGAGAGTAGCC 59.054 57.143 0.00 0.00 0.00 3.93
2166 2187 0.330604 AGTACACCCGAGAGTAGCCA 59.669 55.000 0.00 0.00 0.00 4.75
2167 2188 0.455005 GTACACCCGAGAGTAGCCAC 59.545 60.000 0.00 0.00 0.00 5.01
2168 2189 0.038599 TACACCCGAGAGTAGCCACA 59.961 55.000 0.00 0.00 0.00 4.17
2169 2190 1.215647 CACCCGAGAGTAGCCACAC 59.784 63.158 0.00 0.00 0.00 3.82
2170 2191 1.982938 ACCCGAGAGTAGCCACACC 60.983 63.158 0.00 0.00 0.00 4.16
2171 2192 1.682684 CCCGAGAGTAGCCACACCT 60.683 63.158 0.00 0.00 0.00 4.00
2172 2193 1.258445 CCCGAGAGTAGCCACACCTT 61.258 60.000 0.00 0.00 0.00 3.50
2173 2194 0.608640 CCGAGAGTAGCCACACCTTT 59.391 55.000 0.00 0.00 0.00 3.11
2174 2195 1.404315 CCGAGAGTAGCCACACCTTTC 60.404 57.143 0.00 0.00 0.00 2.62
2175 2196 1.404315 CGAGAGTAGCCACACCTTTCC 60.404 57.143 0.00 0.00 0.00 3.13
2176 2197 0.608640 AGAGTAGCCACACCTTTCCG 59.391 55.000 0.00 0.00 0.00 4.30
2177 2198 0.391263 GAGTAGCCACACCTTTCCGG 60.391 60.000 0.00 0.00 39.35 5.14
2179 2200 0.250597 GTAGCCACACCTTTCCGGTT 60.251 55.000 0.00 0.00 46.37 4.44
2180 2201 0.475044 TAGCCACACCTTTCCGGTTT 59.525 50.000 0.00 0.00 46.37 3.27
2181 2202 0.822121 AGCCACACCTTTCCGGTTTC 60.822 55.000 0.00 0.00 46.37 2.78
2182 2203 0.822121 GCCACACCTTTCCGGTTTCT 60.822 55.000 0.00 0.00 46.37 2.52
2186 2207 3.824443 CCACACCTTTCCGGTTTCTTATT 59.176 43.478 0.00 0.00 46.37 1.40
2214 2235 9.583530 CTTTTTATCATCTCTACTACGTAGACG 57.416 37.037 28.74 17.52 39.81 4.18
2253 2274 3.861113 TGTAATCGATGAACGCCTTGTAC 59.139 43.478 0.00 0.00 42.26 2.90
2255 2276 1.990799 TCGATGAACGCCTTGTACAG 58.009 50.000 0.00 0.00 42.26 2.74
2260 2281 3.945981 TGAACGCCTTGTACAGTATGA 57.054 42.857 0.00 0.00 39.69 2.15
2332 2381 1.296832 TGGAGGAATCCCACTATCCCA 59.703 52.381 0.00 0.00 33.55 4.37
2355 2406 1.949525 GCAACACTTATCGCCCATCAT 59.050 47.619 0.00 0.00 0.00 2.45
2357 2408 2.154854 ACACTTATCGCCCATCATCG 57.845 50.000 0.00 0.00 0.00 3.84
2419 2470 5.957771 AGGCATACTCTTCCAAATGAGTA 57.042 39.130 5.49 5.49 45.90 2.59
2435 2486 0.036164 AGTACCGTGGATTGCAGCAA 59.964 50.000 11.07 11.07 0.00 3.91
2624 2680 8.613922 AATTTTCTCCCATCATGTTTCCTAAT 57.386 30.769 0.00 0.00 0.00 1.73
2651 2707 6.362820 GGTTTCTACGAACTTACAGAGAAGTG 59.637 42.308 0.00 0.00 39.62 3.16
2691 2749 8.651391 TTCAGTTTAAAGTAATCGTCACTGAA 57.349 30.769 7.21 7.21 44.03 3.02
2705 2867 3.499918 GTCACTGAAATCAACCTCTGGTG 59.500 47.826 0.00 0.00 35.34 4.17
2718 2880 1.556911 CTCTGGTGGTGCTACTTGGAT 59.443 52.381 0.00 0.00 0.00 3.41
2825 2988 1.146774 TGGAATGAAGGCCCTGACAAA 59.853 47.619 0.00 0.00 0.00 2.83
2826 2989 1.546029 GGAATGAAGGCCCTGACAAAC 59.454 52.381 0.00 0.00 0.00 2.93
2836 3600 1.206072 CTGACAAACGAGCAGCTGC 59.794 57.895 31.53 31.53 42.49 5.25
2907 3671 2.485038 GGAAAAGGCCAAATGCAATGTG 59.515 45.455 5.01 0.00 43.89 3.21
2921 3685 3.236816 GCAATGTGTCATTCAGAAACCG 58.763 45.455 0.00 0.00 33.19 4.44
2924 3688 5.702865 CAATGTGTCATTCAGAAACCGAAT 58.297 37.500 0.00 0.00 33.19 3.34
2925 3689 5.964958 ATGTGTCATTCAGAAACCGAATT 57.035 34.783 0.00 0.00 33.19 2.17
2959 3723 1.067425 CGACCACGTCCATGTTCCTTA 60.067 52.381 0.00 0.00 34.56 2.69
2960 3724 2.418197 CGACCACGTCCATGTTCCTTAT 60.418 50.000 0.00 0.00 34.56 1.73
2961 3725 3.195661 GACCACGTCCATGTTCCTTATC 58.804 50.000 0.00 0.00 0.00 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 2.373540 TGCCATTGATCAGCAAAAGC 57.626 45.000 5.70 1.33 40.48 3.51
25 26 4.201990 GCACCAAACAAAAATTGCCATTGA 60.202 37.500 0.00 0.00 0.00 2.57
27 28 3.952967 AGCACCAAACAAAAATTGCCATT 59.047 34.783 0.00 0.00 0.00 3.16
31 32 5.233957 AGAAAGCACCAAACAAAAATTGC 57.766 34.783 0.00 0.00 0.00 3.56
34 35 9.786105 CAAAATAAGAAAGCACCAAACAAAAAT 57.214 25.926 0.00 0.00 0.00 1.82
63 64 8.853345 GCTACACACAAACTAATTTTCATGATG 58.147 33.333 0.00 0.00 0.00 3.07
88 89 7.184106 CCAAAAATGATGTAAAATCAGCATGC 58.816 34.615 10.51 10.51 42.41 4.06
99 100 5.117584 GCCATGATGCCAAAAATGATGTAA 58.882 37.500 0.00 0.00 0.00 2.41
115 116 8.851541 AAATTTAGTGTCATTTTTGCCATGAT 57.148 26.923 0.00 0.00 33.22 2.45
194 195 4.690719 CACGGGGTGCTTGCCGTA 62.691 66.667 0.00 0.00 37.13 4.02
227 232 1.342076 TGGTGGGCAAAAGTGGTGTAA 60.342 47.619 0.00 0.00 0.00 2.41
241 246 1.851304 ATAAAGTGTGCCATGGTGGG 58.149 50.000 14.67 0.00 38.19 4.61
316 321 5.720371 AATAGTAAGTTTGCCATGTTGCA 57.280 34.783 0.00 0.00 40.07 4.08
341 346 9.083422 TGAACTAAAATTTTCCATGGTCACATA 57.917 29.630 12.58 0.00 34.99 2.29
437 443 7.920682 AGACGTAAATGAAAAGCACAGAAAAAT 59.079 29.630 0.00 0.00 0.00 1.82
465 471 1.619827 CAATTTGCTGGGCCTCTTCAA 59.380 47.619 4.53 0.52 0.00 2.69
466 472 1.259609 CAATTTGCTGGGCCTCTTCA 58.740 50.000 4.53 0.00 0.00 3.02
467 473 0.533951 CCAATTTGCTGGGCCTCTTC 59.466 55.000 4.53 0.00 32.32 2.87
483 489 2.657143 AGAAAACGCCTAACAACCCAA 58.343 42.857 0.00 0.00 0.00 4.12
497 503 1.261619 CGGCGGCATGATCTAGAAAAC 59.738 52.381 10.53 0.00 0.00 2.43
524 532 1.842381 AAAAGTCCCTCCAGCCCGAG 61.842 60.000 0.00 0.00 0.00 4.63
575 583 2.586258 AGGAGACCATCGATCAAACG 57.414 50.000 0.00 0.00 0.00 3.60
579 587 1.134699 GCACAAGGAGACCATCGATCA 60.135 52.381 0.00 0.00 0.00 2.92
580 588 1.576356 GCACAAGGAGACCATCGATC 58.424 55.000 0.00 0.00 0.00 3.69
587 595 2.027625 CGTTCGGCACAAGGAGACC 61.028 63.158 0.00 0.00 0.00 3.85
589 597 1.289066 CTCGTTCGGCACAAGGAGA 59.711 57.895 9.78 0.00 39.60 3.71
615 623 4.667935 TCCGGGGAAGGGCCAGAA 62.668 66.667 6.18 0.00 38.95 3.02
638 646 6.036735 AGGTTTTACATGATATTGACCGAACG 59.963 38.462 0.00 0.00 0.00 3.95
639 647 7.316544 AGGTTTTACATGATATTGACCGAAC 57.683 36.000 0.00 0.00 0.00 3.95
640 648 8.479689 TCTAGGTTTTACATGATATTGACCGAA 58.520 33.333 0.00 0.00 0.00 4.30
641 649 8.014070 TCTAGGTTTTACATGATATTGACCGA 57.986 34.615 0.00 0.00 0.00 4.69
700 711 7.444792 TCGTTAACAATACACACAATTAACCCT 59.555 33.333 6.39 0.00 31.73 4.34
724 735 1.598183 CCGTAGATGTAGCTGTGCTCG 60.598 57.143 0.00 0.00 40.44 5.03
730 741 1.120530 AACCCCCGTAGATGTAGCTG 58.879 55.000 0.00 0.00 0.00 4.24
731 742 1.875488 AAACCCCCGTAGATGTAGCT 58.125 50.000 0.00 0.00 0.00 3.32
739 750 1.094785 CTCATGCAAAACCCCCGTAG 58.905 55.000 0.00 0.00 0.00 3.51
742 753 0.678950 AAACTCATGCAAAACCCCCG 59.321 50.000 0.00 0.00 0.00 5.73
748 759 2.625790 AGCCCGTAAAACTCATGCAAAA 59.374 40.909 0.00 0.00 0.00 2.44
752 763 1.940613 CCTAGCCCGTAAAACTCATGC 59.059 52.381 0.00 0.00 0.00 4.06
755 766 1.066430 CAGCCTAGCCCGTAAAACTCA 60.066 52.381 0.00 0.00 0.00 3.41
759 770 0.539986 CCTCAGCCTAGCCCGTAAAA 59.460 55.000 0.00 0.00 0.00 1.52
783 794 9.906660 TTTCATCTTAACAACCAATCAATACAC 57.093 29.630 0.00 0.00 0.00 2.90
787 798 7.598493 CCGTTTTCATCTTAACAACCAATCAAT 59.402 33.333 0.00 0.00 0.00 2.57
795 806 3.571571 GGCCCGTTTTCATCTTAACAAC 58.428 45.455 0.00 0.00 0.00 3.32
823 834 7.504403 TCACTAATCTCTCCATCCTGATTTTC 58.496 38.462 0.00 0.00 32.33 2.29
833 844 3.469006 TCTCCCCTCACTAATCTCTCCAT 59.531 47.826 0.00 0.00 0.00 3.41
864 875 7.873910 ACGGGAAATTTTACAAGAATTAACGA 58.126 30.769 0.00 0.00 0.00 3.85
921 932 3.496884 TGTCATTTCGTTGTTGTAGCCTC 59.503 43.478 0.00 0.00 0.00 4.70
991 1002 0.872388 CACGGAAAGTGTGGTAAGGC 59.128 55.000 0.00 0.00 45.51 4.35
1008 1019 5.643664 TCAAGCAATGCAATCTACATTCAC 58.356 37.500 8.35 0.00 35.58 3.18
1021 1032 7.095017 GGTCTAGGTTATTAGATCAAGCAATGC 60.095 40.741 0.00 0.00 32.22 3.56
1037 1048 2.041612 GGGCGGGGGTCTAGGTTA 60.042 66.667 0.00 0.00 0.00 2.85
1073 1090 0.821301 TTGCGCCTCAATTCACCACA 60.821 50.000 4.18 0.00 0.00 4.17
1103 1120 4.821589 CGAACCCTCCTCGCCTGC 62.822 72.222 0.00 0.00 0.00 4.85
1186 1203 1.153842 CCGCGTCAGCACATACTCA 60.154 57.895 4.92 0.00 45.49 3.41
1385 1405 3.316573 GATCCCGGGCGATGATCCC 62.317 68.421 18.49 0.00 40.43 3.85
1387 1407 1.079543 CTGATCCCGGGCGATGATC 60.080 63.158 18.49 14.16 36.33 2.92
1411 1431 3.900892 CCGATGGGGAGACGGTCG 61.901 72.222 1.89 0.00 41.47 4.79
1531 1551 1.005394 GAAACGCTCCCGAACCTGA 60.005 57.895 0.00 0.00 38.29 3.86
1588 1608 1.906574 TCAACCTCGACATAGCCCTTT 59.093 47.619 0.00 0.00 0.00 3.11
1626 1646 3.962718 CCATGCCTTGGTATCTTCCAATT 59.037 43.478 0.00 0.00 44.94 2.32
1661 1681 0.459237 CCTGCGTCTAAGTCTGCCTG 60.459 60.000 0.00 0.00 0.00 4.85
1733 1754 3.195825 AGACAGATGGCTAACACAGGTAC 59.804 47.826 0.00 0.00 0.00 3.34
1773 1794 9.015367 TCGAAAGAAACACCATGGATAATAAAA 57.985 29.630 21.47 0.00 37.03 1.52
1775 1796 8.044309 TCTCGAAAGAAACACCATGGATAATAA 58.956 33.333 21.47 0.00 41.32 1.40
1776 1797 7.494625 GTCTCGAAAGAAACACCATGGATAATA 59.505 37.037 21.47 0.00 41.32 0.98
1777 1798 6.316390 GTCTCGAAAGAAACACCATGGATAAT 59.684 38.462 21.47 1.12 41.32 1.28
1796 1817 8.289939 AGTTACAGTATAAAATCCAGTCTCGA 57.710 34.615 0.00 0.00 0.00 4.04
1797 1818 8.928270 AAGTTACAGTATAAAATCCAGTCTCG 57.072 34.615 0.00 0.00 0.00 4.04
1799 1820 9.449719 CCAAAGTTACAGTATAAAATCCAGTCT 57.550 33.333 0.00 0.00 0.00 3.24
1800 1821 9.444600 TCCAAAGTTACAGTATAAAATCCAGTC 57.555 33.333 0.00 0.00 0.00 3.51
1801 1822 9.802039 TTCCAAAGTTACAGTATAAAATCCAGT 57.198 29.630 0.00 0.00 0.00 4.00
1837 1858 7.864379 AGTTACAGATTTTTCGAGTTAGTTCGA 59.136 33.333 0.00 0.00 46.86 3.71
1838 1859 8.004585 AGTTACAGATTTTTCGAGTTAGTTCG 57.995 34.615 0.00 0.00 41.79 3.95
1840 1861 9.931210 CAAAGTTACAGATTTTTCGAGTTAGTT 57.069 29.630 0.00 0.00 0.00 2.24
1841 1862 9.321562 TCAAAGTTACAGATTTTTCGAGTTAGT 57.678 29.630 0.00 0.00 0.00 2.24
1842 1863 9.798885 CTCAAAGTTACAGATTTTTCGAGTTAG 57.201 33.333 0.00 0.00 0.00 2.34
1843 1864 9.537192 TCTCAAAGTTACAGATTTTTCGAGTTA 57.463 29.630 0.00 0.00 0.00 2.24
1844 1865 8.336080 GTCTCAAAGTTACAGATTTTTCGAGTT 58.664 33.333 0.00 0.00 0.00 3.01
1845 1866 7.494625 TGTCTCAAAGTTACAGATTTTTCGAGT 59.505 33.333 0.00 0.00 0.00 4.18
1846 1867 7.851508 TGTCTCAAAGTTACAGATTTTTCGAG 58.148 34.615 0.00 0.00 0.00 4.04
1847 1868 7.780008 TGTCTCAAAGTTACAGATTTTTCGA 57.220 32.000 0.00 0.00 0.00 3.71
1848 1869 8.282592 TGATGTCTCAAAGTTACAGATTTTTCG 58.717 33.333 0.00 0.00 0.00 3.46
1849 1870 9.950680 TTGATGTCTCAAAGTTACAGATTTTTC 57.049 29.630 0.00 0.00 38.43 2.29
1872 1893 5.239306 AGCTCGAACATTTGATCAAGTTTGA 59.761 36.000 20.88 20.88 42.14 2.69
1873 1894 5.455392 AGCTCGAACATTTGATCAAGTTTG 58.545 37.500 16.46 16.46 0.00 2.93
1874 1895 5.695851 AGCTCGAACATTTGATCAAGTTT 57.304 34.783 8.41 3.31 0.00 2.66
1875 1896 6.428159 AGTTAGCTCGAACATTTGATCAAGTT 59.572 34.615 11.66 11.66 0.00 2.66
1876 1897 5.934625 AGTTAGCTCGAACATTTGATCAAGT 59.065 36.000 8.41 2.46 0.00 3.16
1877 1898 6.246449 CAGTTAGCTCGAACATTTGATCAAG 58.754 40.000 8.41 0.49 0.00 3.02
1878 1899 5.122239 CCAGTTAGCTCGAACATTTGATCAA 59.878 40.000 3.38 3.38 0.00 2.57
1879 1900 4.631377 CCAGTTAGCTCGAACATTTGATCA 59.369 41.667 0.00 0.00 0.00 2.92
1880 1901 4.494855 GCCAGTTAGCTCGAACATTTGATC 60.495 45.833 0.00 0.00 0.00 2.92
1881 1902 3.375299 GCCAGTTAGCTCGAACATTTGAT 59.625 43.478 0.00 0.00 0.00 2.57
1882 1903 2.742053 GCCAGTTAGCTCGAACATTTGA 59.258 45.455 0.00 0.00 0.00 2.69
1883 1904 2.483877 TGCCAGTTAGCTCGAACATTTG 59.516 45.455 0.00 0.00 0.00 2.32
1884 1905 2.778299 TGCCAGTTAGCTCGAACATTT 58.222 42.857 0.00 0.00 0.00 2.32
1885 1906 2.472695 TGCCAGTTAGCTCGAACATT 57.527 45.000 0.00 0.00 0.00 2.71
1886 1907 2.472695 TTGCCAGTTAGCTCGAACAT 57.527 45.000 0.00 0.00 0.00 2.71
1887 1908 2.248280 TTTGCCAGTTAGCTCGAACA 57.752 45.000 0.00 0.00 0.00 3.18
1888 1909 2.484264 ACATTTGCCAGTTAGCTCGAAC 59.516 45.455 0.00 0.00 0.00 3.95
1889 1910 2.742053 GACATTTGCCAGTTAGCTCGAA 59.258 45.455 0.00 0.00 0.00 3.71
1890 1911 2.289382 TGACATTTGCCAGTTAGCTCGA 60.289 45.455 0.00 0.00 0.00 4.04
1891 1912 2.076100 TGACATTTGCCAGTTAGCTCG 58.924 47.619 0.00 0.00 0.00 5.03
1892 1913 2.159462 GCTGACATTTGCCAGTTAGCTC 60.159 50.000 0.00 0.00 42.17 4.09
1893 1914 1.815003 GCTGACATTTGCCAGTTAGCT 59.185 47.619 0.00 0.00 42.17 3.32
1894 1915 2.268730 GCTGACATTTGCCAGTTAGC 57.731 50.000 0.00 0.00 39.61 3.09
1902 1923 2.796593 GTTGTTTCTGGCTGACATTTGC 59.203 45.455 0.00 0.00 0.00 3.68
1903 1924 4.044336 TGTTGTTTCTGGCTGACATTTG 57.956 40.909 0.00 0.00 0.00 2.32
1904 1925 4.341806 TGATGTTGTTTCTGGCTGACATTT 59.658 37.500 0.00 0.00 0.00 2.32
1905 1926 3.890756 TGATGTTGTTTCTGGCTGACATT 59.109 39.130 0.00 0.00 0.00 2.71
1906 1927 3.489355 TGATGTTGTTTCTGGCTGACAT 58.511 40.909 0.00 0.00 0.00 3.06
1907 1928 2.880268 CTGATGTTGTTTCTGGCTGACA 59.120 45.455 0.00 0.00 0.00 3.58
1908 1929 3.141398 TCTGATGTTGTTTCTGGCTGAC 58.859 45.455 0.00 0.00 0.00 3.51
1909 1930 3.405831 CTCTGATGTTGTTTCTGGCTGA 58.594 45.455 0.00 0.00 0.00 4.26
1910 1931 2.486982 CCTCTGATGTTGTTTCTGGCTG 59.513 50.000 0.00 0.00 0.00 4.85
1911 1932 2.373169 TCCTCTGATGTTGTTTCTGGCT 59.627 45.455 0.00 0.00 0.00 4.75
1912 1933 2.746362 CTCCTCTGATGTTGTTTCTGGC 59.254 50.000 0.00 0.00 0.00 4.85
1913 1934 2.746362 GCTCCTCTGATGTTGTTTCTGG 59.254 50.000 0.00 0.00 0.00 3.86
1914 1935 3.672808 AGCTCCTCTGATGTTGTTTCTG 58.327 45.455 0.00 0.00 0.00 3.02
1915 1936 3.582208 AGAGCTCCTCTGATGTTGTTTCT 59.418 43.478 10.93 0.00 39.62 2.52
1916 1937 3.932089 GAGAGCTCCTCTGATGTTGTTTC 59.068 47.826 10.93 0.00 41.35 2.78
1917 1938 3.326006 TGAGAGCTCCTCTGATGTTGTTT 59.674 43.478 10.93 0.00 41.35 2.83
1918 1939 2.902486 TGAGAGCTCCTCTGATGTTGTT 59.098 45.455 10.93 0.00 41.35 2.83
1919 1940 2.233431 GTGAGAGCTCCTCTGATGTTGT 59.767 50.000 10.93 0.00 41.35 3.32
1920 1941 2.418471 GGTGAGAGCTCCTCTGATGTTG 60.418 54.545 10.93 0.00 41.35 3.33
1921 1942 1.830477 GGTGAGAGCTCCTCTGATGTT 59.170 52.381 10.93 0.00 41.35 2.71
1922 1943 1.272928 TGGTGAGAGCTCCTCTGATGT 60.273 52.381 10.93 0.00 41.35 3.06
1923 1944 1.482954 TGGTGAGAGCTCCTCTGATG 58.517 55.000 10.93 0.00 41.35 3.07
1924 1945 2.244486 TTGGTGAGAGCTCCTCTGAT 57.756 50.000 10.93 0.00 41.35 2.90
1925 1946 2.015456 TTTGGTGAGAGCTCCTCTGA 57.985 50.000 10.93 0.00 41.35 3.27
1926 1947 2.847327 TTTTGGTGAGAGCTCCTCTG 57.153 50.000 10.93 0.00 41.35 3.35
1947 1968 9.657419 ACAAAACTTTGAAGATTGATTTTGTCT 57.343 25.926 9.12 0.00 42.19 3.41
1948 1969 9.693157 CACAAAACTTTGAAGATTGATTTTGTC 57.307 29.630 9.12 0.00 43.33 3.18
1949 1970 8.177013 GCACAAAACTTTGAAGATTGATTTTGT 58.823 29.630 9.12 14.01 45.02 2.83
1950 1971 8.176365 TGCACAAAACTTTGAAGATTGATTTTG 58.824 29.630 9.12 13.58 40.55 2.44
1951 1972 8.177013 GTGCACAAAACTTTGAAGATTGATTTT 58.823 29.630 13.17 3.47 40.55 1.82
1952 1973 7.550196 AGTGCACAAAACTTTGAAGATTGATTT 59.450 29.630 21.04 0.00 40.55 2.17
1953 1974 7.010738 CAGTGCACAAAACTTTGAAGATTGATT 59.989 33.333 21.04 0.00 40.55 2.57
1954 1975 6.477688 CAGTGCACAAAACTTTGAAGATTGAT 59.522 34.615 21.04 0.00 40.55 2.57
1955 1976 5.806502 CAGTGCACAAAACTTTGAAGATTGA 59.193 36.000 21.04 0.00 40.55 2.57
1956 1977 5.577945 ACAGTGCACAAAACTTTGAAGATTG 59.422 36.000 21.04 4.83 40.55 2.67
1957 1978 5.723295 ACAGTGCACAAAACTTTGAAGATT 58.277 33.333 21.04 0.00 40.55 2.40
1958 1979 5.329035 ACAGTGCACAAAACTTTGAAGAT 57.671 34.783 21.04 0.00 40.55 2.40
1959 1980 4.782019 ACAGTGCACAAAACTTTGAAGA 57.218 36.364 21.04 0.00 40.55 2.87
1960 1981 5.404968 TCAAACAGTGCACAAAACTTTGAAG 59.595 36.000 21.04 2.80 40.55 3.02
1961 1982 5.292765 TCAAACAGTGCACAAAACTTTGAA 58.707 33.333 21.04 6.29 40.55 2.69
1962 1983 4.876125 TCAAACAGTGCACAAAACTTTGA 58.124 34.783 21.04 18.26 40.55 2.69
1963 1984 4.922692 TCTCAAACAGTGCACAAAACTTTG 59.077 37.500 21.04 16.49 43.62 2.77
1964 1985 5.132897 TCTCAAACAGTGCACAAAACTTT 57.867 34.783 21.04 5.59 0.00 2.66
1965 1986 4.782019 TCTCAAACAGTGCACAAAACTT 57.218 36.364 21.04 1.71 0.00 2.66
1966 1987 4.218417 ACTTCTCAAACAGTGCACAAAACT 59.782 37.500 21.04 0.00 0.00 2.66
1967 1988 4.324402 CACTTCTCAAACAGTGCACAAAAC 59.676 41.667 21.04 0.00 34.33 2.43
1968 1989 4.217334 TCACTTCTCAAACAGTGCACAAAA 59.783 37.500 21.04 0.34 40.33 2.44
1969 1990 3.755905 TCACTTCTCAAACAGTGCACAAA 59.244 39.130 21.04 0.00 40.33 2.83
1970 1991 3.342719 TCACTTCTCAAACAGTGCACAA 58.657 40.909 21.04 0.33 40.33 3.33
1971 1992 2.984562 TCACTTCTCAAACAGTGCACA 58.015 42.857 21.04 0.00 40.33 4.57
1972 1993 4.558538 AATCACTTCTCAAACAGTGCAC 57.441 40.909 9.40 9.40 40.33 4.57
1973 1994 5.105797 ACAAAATCACTTCTCAAACAGTGCA 60.106 36.000 0.00 0.00 40.33 4.57
1974 1995 5.343249 ACAAAATCACTTCTCAAACAGTGC 58.657 37.500 0.00 0.00 40.33 4.40
1975 1996 7.816945 AAACAAAATCACTTCTCAAACAGTG 57.183 32.000 0.00 0.00 41.65 3.66
1976 1997 8.831715 AAAAACAAAATCACTTCTCAAACAGT 57.168 26.923 0.00 0.00 0.00 3.55
2010 2031 6.038050 CCAAAGAAAACATATGAGGAGCTCTC 59.962 42.308 14.64 9.73 42.74 3.20
2011 2032 5.884792 CCAAAGAAAACATATGAGGAGCTCT 59.115 40.000 14.64 0.00 0.00 4.09
2012 2033 5.449725 GCCAAAGAAAACATATGAGGAGCTC 60.450 44.000 10.38 4.71 0.00 4.09
2013 2034 4.400567 GCCAAAGAAAACATATGAGGAGCT 59.599 41.667 10.38 0.00 0.00 4.09
2014 2035 4.400567 AGCCAAAGAAAACATATGAGGAGC 59.599 41.667 10.38 0.02 0.00 4.70
2015 2036 5.649395 TCAGCCAAAGAAAACATATGAGGAG 59.351 40.000 10.38 0.00 0.00 3.69
2016 2037 5.569355 TCAGCCAAAGAAAACATATGAGGA 58.431 37.500 10.38 0.00 0.00 3.71
2017 2038 5.902613 TCAGCCAAAGAAAACATATGAGG 57.097 39.130 10.38 0.00 0.00 3.86
2018 2039 8.767478 AATTTCAGCCAAAGAAAACATATGAG 57.233 30.769 10.38 0.00 38.36 2.90
2019 2040 9.558396 AAAATTTCAGCCAAAGAAAACATATGA 57.442 25.926 10.38 0.00 38.36 2.15
2020 2041 9.601971 CAAAATTTCAGCCAAAGAAAACATATG 57.398 29.630 0.00 0.00 38.36 1.78
2021 2042 8.291740 GCAAAATTTCAGCCAAAGAAAACATAT 58.708 29.630 4.66 0.00 38.36 1.78
2022 2043 7.281774 TGCAAAATTTCAGCCAAAGAAAACATA 59.718 29.630 11.62 0.00 38.36 2.29
2023 2044 6.095160 TGCAAAATTTCAGCCAAAGAAAACAT 59.905 30.769 11.62 0.00 38.36 2.71
2024 2045 5.413833 TGCAAAATTTCAGCCAAAGAAAACA 59.586 32.000 11.62 0.00 38.36 2.83
2025 2046 5.878133 TGCAAAATTTCAGCCAAAGAAAAC 58.122 33.333 11.62 0.00 38.36 2.43
2026 2047 5.066246 CCTGCAAAATTTCAGCCAAAGAAAA 59.934 36.000 11.62 0.00 38.36 2.29
2027 2048 4.575645 CCTGCAAAATTTCAGCCAAAGAAA 59.424 37.500 11.62 0.00 39.11 2.52
2028 2049 4.128643 CCTGCAAAATTTCAGCCAAAGAA 58.871 39.130 11.62 0.00 0.00 2.52
2029 2050 3.387374 TCCTGCAAAATTTCAGCCAAAGA 59.613 39.130 11.62 2.96 0.00 2.52
2030 2051 3.731089 TCCTGCAAAATTTCAGCCAAAG 58.269 40.909 11.62 4.53 0.00 2.77
2031 2052 3.834489 TCCTGCAAAATTTCAGCCAAA 57.166 38.095 11.62 0.00 0.00 3.28
2032 2053 3.731089 CTTCCTGCAAAATTTCAGCCAA 58.269 40.909 11.62 2.77 0.00 4.52
2033 2054 2.548493 GCTTCCTGCAAAATTTCAGCCA 60.548 45.455 11.62 2.08 42.31 4.75
2034 2055 2.071540 GCTTCCTGCAAAATTTCAGCC 58.928 47.619 11.62 0.00 42.31 4.85
2035 2056 2.991866 GAGCTTCCTGCAAAATTTCAGC 59.008 45.455 8.24 8.24 45.94 4.26
2036 2057 4.247267 TGAGCTTCCTGCAAAATTTCAG 57.753 40.909 0.00 0.00 45.94 3.02
2037 2058 4.669206 TTGAGCTTCCTGCAAAATTTCA 57.331 36.364 0.00 0.00 45.94 2.69
2038 2059 4.810491 TGTTTGAGCTTCCTGCAAAATTTC 59.190 37.500 0.00 0.00 45.94 2.17
2039 2060 4.768583 TGTTTGAGCTTCCTGCAAAATTT 58.231 34.783 0.00 0.00 45.94 1.82
2040 2061 4.405116 TGTTTGAGCTTCCTGCAAAATT 57.595 36.364 0.00 0.00 45.94 1.82
2041 2062 4.612264 ATGTTTGAGCTTCCTGCAAAAT 57.388 36.364 0.00 0.00 45.94 1.82
2042 2063 4.405116 AATGTTTGAGCTTCCTGCAAAA 57.595 36.364 0.00 0.00 45.94 2.44
2043 2064 4.121317 CAAATGTTTGAGCTTCCTGCAAA 58.879 39.130 0.00 0.00 45.94 3.68
2044 2065 3.384146 TCAAATGTTTGAGCTTCCTGCAA 59.616 39.130 4.16 0.00 41.88 4.08
2045 2066 2.957680 TCAAATGTTTGAGCTTCCTGCA 59.042 40.909 4.16 0.00 41.88 4.41
2046 2067 3.648339 TCAAATGTTTGAGCTTCCTGC 57.352 42.857 4.16 0.00 41.88 4.85
2056 2077 8.583810 AGACATCAAACTTGATCAAATGTTTG 57.416 30.769 29.65 29.65 45.62 2.93
2057 2078 8.415553 TGAGACATCAAACTTGATCAAATGTTT 58.584 29.630 18.90 17.54 45.62 2.83
2058 2079 7.944061 TGAGACATCAAACTTGATCAAATGTT 58.056 30.769 18.90 13.51 45.62 2.71
2059 2080 7.514784 TGAGACATCAAACTTGATCAAATGT 57.485 32.000 18.25 18.25 45.62 2.71
2060 2081 9.717892 CTATGAGACATCAAACTTGATCAAATG 57.282 33.333 9.88 11.86 45.62 2.32
2061 2082 9.458727 ACTATGAGACATCAAACTTGATCAAAT 57.541 29.630 9.88 0.00 45.62 2.32
2062 2083 8.853077 ACTATGAGACATCAAACTTGATCAAA 57.147 30.769 9.88 0.00 45.62 2.69
2063 2084 8.853077 AACTATGAGACATCAAACTTGATCAA 57.147 30.769 8.12 8.12 45.62 2.57
2064 2085 8.853077 AAACTATGAGACATCAAACTTGATCA 57.147 30.769 1.87 0.00 45.62 2.92
2065 2086 8.939929 TGAAACTATGAGACATCAAACTTGATC 58.060 33.333 1.87 0.00 45.62 2.92
2067 2088 8.150296 TCTGAAACTATGAGACATCAAACTTGA 58.850 33.333 0.00 0.00 39.39 3.02
2068 2089 8.315391 TCTGAAACTATGAGACATCAAACTTG 57.685 34.615 0.00 0.00 39.39 3.16
2069 2090 9.512588 AATCTGAAACTATGAGACATCAAACTT 57.487 29.630 0.00 0.00 39.39 2.66
2070 2091 9.512588 AAATCTGAAACTATGAGACATCAAACT 57.487 29.630 0.00 0.00 39.39 2.66
2095 2116 4.663166 TGCGAACAAACAATCTCGAAAAA 58.337 34.783 0.00 0.00 33.13 1.94
2096 2117 4.280101 TGCGAACAAACAATCTCGAAAA 57.720 36.364 0.00 0.00 33.13 2.29
2097 2118 3.953874 TGCGAACAAACAATCTCGAAA 57.046 38.095 0.00 0.00 33.13 3.46
2098 2119 4.481930 AATGCGAACAAACAATCTCGAA 57.518 36.364 0.00 0.00 33.13 3.71
2099 2120 4.481930 AAATGCGAACAAACAATCTCGA 57.518 36.364 0.00 0.00 33.13 4.04
2100 2121 5.559694 AAAAATGCGAACAAACAATCTCG 57.440 34.783 0.00 0.00 0.00 4.04
2130 2151 6.843069 GTGTACTACACCCGAGTTTAAAAA 57.157 37.500 7.99 0.00 43.05 1.94
2144 2165 2.636830 GCTACTCTCGGGTGTACTACA 58.363 52.381 0.00 0.00 0.00 2.74
2145 2166 1.946081 GGCTACTCTCGGGTGTACTAC 59.054 57.143 0.00 0.00 0.00 2.73
2146 2167 1.561076 TGGCTACTCTCGGGTGTACTA 59.439 52.381 0.00 0.00 0.00 1.82
2147 2168 0.330604 TGGCTACTCTCGGGTGTACT 59.669 55.000 0.00 0.00 0.00 2.73
2148 2169 0.455005 GTGGCTACTCTCGGGTGTAC 59.545 60.000 0.00 0.00 0.00 2.90
2149 2170 0.038599 TGTGGCTACTCTCGGGTGTA 59.961 55.000 0.64 0.00 0.00 2.90
2150 2171 1.228769 TGTGGCTACTCTCGGGTGT 60.229 57.895 0.64 0.00 0.00 4.16
2151 2172 1.215647 GTGTGGCTACTCTCGGGTG 59.784 63.158 0.64 0.00 0.00 4.61
2152 2173 1.982938 GGTGTGGCTACTCTCGGGT 60.983 63.158 0.64 0.00 0.00 5.28
2153 2174 1.258445 AAGGTGTGGCTACTCTCGGG 61.258 60.000 0.64 0.00 0.00 5.14
2154 2175 0.608640 AAAGGTGTGGCTACTCTCGG 59.391 55.000 0.64 0.00 0.00 4.63
2155 2176 1.404315 GGAAAGGTGTGGCTACTCTCG 60.404 57.143 0.64 0.00 0.00 4.04
2156 2177 1.404315 CGGAAAGGTGTGGCTACTCTC 60.404 57.143 0.64 0.00 0.00 3.20
2157 2178 0.608640 CGGAAAGGTGTGGCTACTCT 59.391 55.000 0.64 0.00 0.00 3.24
2158 2179 0.391263 CCGGAAAGGTGTGGCTACTC 60.391 60.000 0.00 0.00 34.51 2.59
2159 2180 1.677552 CCGGAAAGGTGTGGCTACT 59.322 57.895 0.00 0.00 34.51 2.57
2160 2181 4.296265 CCGGAAAGGTGTGGCTAC 57.704 61.111 0.00 0.00 34.51 3.58
2332 2381 3.181455 TGATGGGCGATAAGTGTTGCTAT 60.181 43.478 0.00 0.00 0.00 2.97
2355 2406 4.277423 TCTTCTTGCGGATATACATCACGA 59.723 41.667 0.00 0.00 32.32 4.35
2357 2408 6.073548 CCTTTCTTCTTGCGGATATACATCAC 60.074 42.308 0.00 0.00 32.32 3.06
2419 2470 2.057137 ATATTGCTGCAATCCACGGT 57.943 45.000 29.29 9.25 35.54 4.83
2435 2486 0.175760 AGGACGACTGCGCACAATAT 59.824 50.000 5.66 0.00 42.48 1.28
2445 2496 6.456447 TTTTCGTACAATAAAGGACGACTG 57.544 37.500 0.25 0.00 43.44 3.51
2446 2497 6.401796 GCATTTTCGTACAATAAAGGACGACT 60.402 38.462 0.25 0.00 43.44 4.18
2624 2680 7.446625 ACTTCTCTGTAAGTTCGTAGAAACCTA 59.553 37.037 0.00 0.00 45.90 3.08
2651 2707 9.176181 CTTTAAACTGAATCTAGCTAGATCGTC 57.824 37.037 31.49 25.88 41.96 4.20
2687 2745 2.816087 CACCACCAGAGGTTGATTTCAG 59.184 50.000 0.00 0.00 40.77 3.02
2691 2749 0.773644 AGCACCACCAGAGGTTGATT 59.226 50.000 0.00 0.00 40.77 2.57
2705 2867 1.771255 AGATGGGATCCAAGTAGCACC 59.229 52.381 15.23 0.00 36.95 5.01
2718 2880 1.137675 CTCACTCATTCGCAGATGGGA 59.862 52.381 3.37 0.00 35.04 4.37
2825 2988 1.153608 CTGATCTGCAGCTGCTCGT 60.154 57.895 36.61 22.69 42.66 4.18
2826 2989 3.707440 CTGATCTGCAGCTGCTCG 58.293 61.111 36.61 26.92 42.66 5.03
2907 3671 7.078228 GGCATATAATTCGGTTTCTGAATGAC 58.922 38.462 4.84 0.00 36.24 3.06
2921 3685 2.735134 GTCGTGTCCCGGCATATAATTC 59.265 50.000 0.00 0.00 41.97 2.17
2924 3688 0.390124 GGTCGTGTCCCGGCATATAA 59.610 55.000 0.00 0.00 44.95 0.98
2925 3689 0.756070 TGGTCGTGTCCCGGCATATA 60.756 55.000 0.00 0.00 44.95 0.86



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.