Multiple sequence alignment - TraesCS2D01G514700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G514700 chr2D 100.000 2682 0 0 1 2682 606595684 606598365 0.000000e+00 4953.0
1 TraesCS2D01G514700 chr2D 85.369 786 80 16 875 1644 606517545 606518311 0.000000e+00 782.0
2 TraesCS2D01G514700 chr2D 84.100 478 55 8 960 1421 606554761 606555233 2.450000e-120 442.0
3 TraesCS2D01G514700 chr2D 84.967 153 17 5 1211 1357 606637289 606637441 1.660000e-32 150.0
4 TraesCS2D01G514700 chr2D 84.768 151 17 5 1211 1355 606625647 606625797 2.150000e-31 147.0
5 TraesCS2D01G514700 chr2D 78.008 241 19 18 1908 2124 606555648 606555878 1.300000e-23 121.0
6 TraesCS2D01G514700 chr2D 97.222 36 1 0 2625 2660 606556441 606556476 8.020000e-06 62.1
7 TraesCS2D01G514700 chr2B 85.234 1219 97 34 968 2131 737694118 737695308 0.000000e+00 1177.0
8 TraesCS2D01G514700 chr2B 81.684 1354 155 49 344 1642 737688068 737689383 0.000000e+00 1040.0
9 TraesCS2D01G514700 chr2B 84.199 462 33 19 1693 2124 737689642 737690093 1.920000e-111 412.0
10 TraesCS2D01G514700 chr2B 86.842 152 14 5 1212 1357 738176031 738176182 5.940000e-37 165.0
11 TraesCS2D01G514700 chr2A 90.747 562 31 8 2142 2682 738114862 738115423 0.000000e+00 730.0
12 TraesCS2D01G514700 chr2A 86.522 690 51 24 960 1628 738043451 738044119 0.000000e+00 721.0
13 TraesCS2D01G514700 chr2A 77.049 427 53 29 693 1086 738114335 738114749 1.260000e-48 204.0
14 TraesCS2D01G514700 chr2A 86.000 150 15 3 1212 1355 738202644 738202793 3.580000e-34 156.0
15 TraesCS2D01G514700 chr2A 88.136 59 3 4 2624 2682 738056026 738056080 1.720000e-07 67.6
16 TraesCS2D01G514700 chr1D 95.745 47 1 1 90 135 297541636 297541682 1.030000e-09 75.0
17 TraesCS2D01G514700 chr3B 100.000 39 0 0 96 134 177888552 177888514 3.700000e-09 73.1
18 TraesCS2D01G514700 chr3B 93.617 47 2 1 90 135 11961459 11961413 4.790000e-08 69.4
19 TraesCS2D01G514700 chr6A 95.556 45 1 1 90 133 337242602 337242646 1.330000e-08 71.3
20 TraesCS2D01G514700 chr6A 91.304 46 3 1 90 134 105293201 105293156 8.020000e-06 62.1
21 TraesCS2D01G514700 chr3A 93.750 48 2 1 90 136 146779911 146779958 1.330000e-08 71.3
22 TraesCS2D01G514700 chr3A 92.157 51 3 1 90 139 744687777 744687827 1.330000e-08 71.3
23 TraesCS2D01G514700 chr7B 90.566 53 4 1 90 141 147663156 147663104 4.790000e-08 69.4
24 TraesCS2D01G514700 chr4D 95.455 44 1 1 90 132 464987081 464987124 4.790000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G514700 chr2D 606595684 606598365 2681 False 4953.000000 4953 100.000000 1 2682 1 chr2D.!!$F2 2681
1 TraesCS2D01G514700 chr2D 606517545 606518311 766 False 782.000000 782 85.369000 875 1644 1 chr2D.!!$F1 769
2 TraesCS2D01G514700 chr2D 606554761 606556476 1715 False 208.366667 442 86.443333 960 2660 3 chr2D.!!$F5 1700
3 TraesCS2D01G514700 chr2B 737694118 737695308 1190 False 1177.000000 1177 85.234000 968 2131 1 chr2B.!!$F1 1163
4 TraesCS2D01G514700 chr2B 737688068 737690093 2025 False 726.000000 1040 82.941500 344 2124 2 chr2B.!!$F3 1780
5 TraesCS2D01G514700 chr2A 738043451 738044119 668 False 721.000000 721 86.522000 960 1628 1 chr2A.!!$F1 668
6 TraesCS2D01G514700 chr2A 738114335 738115423 1088 False 467.000000 730 83.898000 693 2682 2 chr2A.!!$F4 1989

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
450 451 0.027324 CCGTCGGCGAGTAGAAGTAC 59.973 60.0 12.93 0.0 41.33 2.73 F
965 1000 0.034198 TTTCCGCGACTCAACCATGA 59.966 50.0 8.23 0.0 0.00 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1404 1491 0.03309 AAGAAACTGTCCGGTCCGAC 59.967 55.0 14.39 9.76 0.0 4.79 R
1985 2553 0.03759 TTTAGCCGCCTTCACCATGT 59.962 50.0 0.00 0.00 0.0 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.564262 ATCCACATGCAGACACCTG 57.436 52.632 0.00 0.00 43.22 4.00
19 20 0.034767 ATCCACATGCAGACACCTGG 60.035 55.000 0.00 0.00 40.72 4.45
20 21 2.338015 CCACATGCAGACACCTGGC 61.338 63.158 0.00 0.00 40.72 4.85
21 22 1.601477 CACATGCAGACACCTGGCA 60.601 57.895 0.00 0.00 40.72 4.92
22 23 1.151221 ACATGCAGACACCTGGCAA 59.849 52.632 0.00 0.00 40.72 4.52
23 24 0.467844 ACATGCAGACACCTGGCAAA 60.468 50.000 0.00 0.00 40.72 3.68
24 25 0.892755 CATGCAGACACCTGGCAAAT 59.107 50.000 0.00 0.00 40.72 2.32
25 26 1.135199 CATGCAGACACCTGGCAAATC 60.135 52.381 0.00 0.00 40.72 2.17
26 27 0.178995 TGCAGACACCTGGCAAATCA 60.179 50.000 0.00 0.00 40.72 2.57
27 28 0.961019 GCAGACACCTGGCAAATCAA 59.039 50.000 0.00 0.00 40.72 2.57
28 29 1.340889 GCAGACACCTGGCAAATCAAA 59.659 47.619 0.00 0.00 40.72 2.69
29 30 2.028748 GCAGACACCTGGCAAATCAAAT 60.029 45.455 0.00 0.00 40.72 2.32
30 31 3.841643 CAGACACCTGGCAAATCAAATC 58.158 45.455 0.00 0.00 36.77 2.17
31 32 3.508793 CAGACACCTGGCAAATCAAATCT 59.491 43.478 0.00 0.00 36.77 2.40
32 33 4.021719 CAGACACCTGGCAAATCAAATCTT 60.022 41.667 0.00 0.00 36.77 2.40
33 34 5.183713 CAGACACCTGGCAAATCAAATCTTA 59.816 40.000 0.00 0.00 36.77 2.10
34 35 5.416952 AGACACCTGGCAAATCAAATCTTAG 59.583 40.000 0.00 0.00 0.00 2.18
35 36 4.082026 ACACCTGGCAAATCAAATCTTAGC 60.082 41.667 0.00 0.00 0.00 3.09
36 37 3.129287 ACCTGGCAAATCAAATCTTAGCG 59.871 43.478 0.00 0.00 0.00 4.26
37 38 3.111098 CTGGCAAATCAAATCTTAGCGC 58.889 45.455 0.00 0.00 0.00 5.92
38 39 2.491298 TGGCAAATCAAATCTTAGCGCA 59.509 40.909 11.47 0.00 0.00 6.09
39 40 3.111098 GGCAAATCAAATCTTAGCGCAG 58.889 45.455 11.47 0.00 0.00 5.18
54 55 1.538276 CGCAGCAATCATCGTTTTCC 58.462 50.000 0.00 0.00 0.00 3.13
55 56 1.131126 CGCAGCAATCATCGTTTTCCT 59.869 47.619 0.00 0.00 0.00 3.36
56 57 2.414559 CGCAGCAATCATCGTTTTCCTT 60.415 45.455 0.00 0.00 0.00 3.36
57 58 3.578688 GCAGCAATCATCGTTTTCCTTT 58.421 40.909 0.00 0.00 0.00 3.11
58 59 3.365820 GCAGCAATCATCGTTTTCCTTTG 59.634 43.478 0.00 0.00 0.00 2.77
59 60 3.365820 CAGCAATCATCGTTTTCCTTTGC 59.634 43.478 0.00 0.00 38.53 3.68
60 61 2.667969 GCAATCATCGTTTTCCTTTGCC 59.332 45.455 0.00 0.00 33.64 4.52
61 62 3.860378 GCAATCATCGTTTTCCTTTGCCA 60.860 43.478 0.00 0.00 33.64 4.92
62 63 4.305769 CAATCATCGTTTTCCTTTGCCAA 58.694 39.130 0.00 0.00 0.00 4.52
63 64 4.599047 ATCATCGTTTTCCTTTGCCAAA 57.401 36.364 0.00 0.00 0.00 3.28
64 65 4.599047 TCATCGTTTTCCTTTGCCAAAT 57.401 36.364 0.00 0.00 0.00 2.32
65 66 4.555262 TCATCGTTTTCCTTTGCCAAATC 58.445 39.130 0.00 0.00 0.00 2.17
66 67 3.378911 TCGTTTTCCTTTGCCAAATCC 57.621 42.857 0.00 0.00 0.00 3.01
67 68 2.036604 TCGTTTTCCTTTGCCAAATCCC 59.963 45.455 0.00 0.00 0.00 3.85
68 69 2.224161 CGTTTTCCTTTGCCAAATCCCA 60.224 45.455 0.00 0.00 0.00 4.37
69 70 3.742640 CGTTTTCCTTTGCCAAATCCCAA 60.743 43.478 0.00 0.00 0.00 4.12
70 71 4.397420 GTTTTCCTTTGCCAAATCCCAAT 58.603 39.130 0.00 0.00 0.00 3.16
71 72 4.720775 TTTCCTTTGCCAAATCCCAATT 57.279 36.364 0.00 0.00 0.00 2.32
72 73 4.720775 TTCCTTTGCCAAATCCCAATTT 57.279 36.364 0.00 0.00 35.43 1.82
73 74 5.832539 TTCCTTTGCCAAATCCCAATTTA 57.167 34.783 0.00 0.00 33.27 1.40
74 75 6.385766 TTCCTTTGCCAAATCCCAATTTAT 57.614 33.333 0.00 0.00 33.27 1.40
75 76 5.743117 TCCTTTGCCAAATCCCAATTTATG 58.257 37.500 0.00 0.00 33.27 1.90
76 77 5.250313 TCCTTTGCCAAATCCCAATTTATGT 59.750 36.000 0.00 0.00 33.27 2.29
77 78 6.441924 TCCTTTGCCAAATCCCAATTTATGTA 59.558 34.615 0.00 0.00 33.27 2.29
78 79 6.762661 CCTTTGCCAAATCCCAATTTATGTAG 59.237 38.462 0.00 0.00 33.27 2.74
79 80 5.275067 TGCCAAATCCCAATTTATGTAGC 57.725 39.130 0.00 0.00 33.27 3.58
80 81 4.100808 TGCCAAATCCCAATTTATGTAGCC 59.899 41.667 0.00 0.00 33.27 3.93
81 82 4.503123 GCCAAATCCCAATTTATGTAGCCC 60.503 45.833 0.00 0.00 33.27 5.19
82 83 4.653341 CCAAATCCCAATTTATGTAGCCCA 59.347 41.667 0.00 0.00 33.27 5.36
83 84 5.221501 CCAAATCCCAATTTATGTAGCCCAG 60.222 44.000 0.00 0.00 33.27 4.45
84 85 3.593442 TCCCAATTTATGTAGCCCAGG 57.407 47.619 0.00 0.00 0.00 4.45
85 86 2.856231 TCCCAATTTATGTAGCCCAGGT 59.144 45.455 0.00 0.00 0.00 4.00
86 87 3.270960 TCCCAATTTATGTAGCCCAGGTT 59.729 43.478 0.00 0.00 0.00 3.50
87 88 3.636764 CCCAATTTATGTAGCCCAGGTTC 59.363 47.826 0.00 0.00 0.00 3.62
88 89 3.315191 CCAATTTATGTAGCCCAGGTTCG 59.685 47.826 0.00 0.00 0.00 3.95
89 90 4.196193 CAATTTATGTAGCCCAGGTTCGA 58.804 43.478 0.00 0.00 0.00 3.71
90 91 4.706842 ATTTATGTAGCCCAGGTTCGAT 57.293 40.909 0.00 0.00 0.00 3.59
91 92 3.469008 TTATGTAGCCCAGGTTCGATG 57.531 47.619 0.00 0.00 0.00 3.84
92 93 1.204146 ATGTAGCCCAGGTTCGATGT 58.796 50.000 0.00 0.00 0.00 3.06
93 94 0.981183 TGTAGCCCAGGTTCGATGTT 59.019 50.000 0.00 0.00 0.00 2.71
94 95 1.066430 TGTAGCCCAGGTTCGATGTTC 60.066 52.381 0.00 0.00 0.00 3.18
95 96 1.066430 GTAGCCCAGGTTCGATGTTCA 60.066 52.381 0.00 0.00 0.00 3.18
96 97 0.400213 AGCCCAGGTTCGATGTTCAA 59.600 50.000 0.00 0.00 0.00 2.69
97 98 1.004745 AGCCCAGGTTCGATGTTCAAT 59.995 47.619 0.00 0.00 0.00 2.57
98 99 1.401905 GCCCAGGTTCGATGTTCAATC 59.598 52.381 0.00 0.00 0.00 2.67
99 100 2.941415 GCCCAGGTTCGATGTTCAATCT 60.941 50.000 0.00 0.00 0.00 2.40
100 101 3.347216 CCCAGGTTCGATGTTCAATCTT 58.653 45.455 0.00 0.00 0.00 2.40
101 102 3.758554 CCCAGGTTCGATGTTCAATCTTT 59.241 43.478 0.00 0.00 0.00 2.52
102 103 4.218417 CCCAGGTTCGATGTTCAATCTTTT 59.782 41.667 0.00 0.00 0.00 2.27
103 104 5.414454 CCCAGGTTCGATGTTCAATCTTTTA 59.586 40.000 0.00 0.00 0.00 1.52
104 105 6.072175 CCCAGGTTCGATGTTCAATCTTTTAA 60.072 38.462 0.00 0.00 0.00 1.52
105 106 7.023575 CCAGGTTCGATGTTCAATCTTTTAAG 58.976 38.462 0.00 0.00 0.00 1.85
106 107 7.308589 CCAGGTTCGATGTTCAATCTTTTAAGT 60.309 37.037 0.00 0.00 0.00 2.24
107 108 8.717821 CAGGTTCGATGTTCAATCTTTTAAGTA 58.282 33.333 0.00 0.00 0.00 2.24
108 109 9.280174 AGGTTCGATGTTCAATCTTTTAAGTAA 57.720 29.630 0.00 0.00 0.00 2.24
116 117 9.337091 TGTTCAATCTTTTAAGTAATAAAGCGC 57.663 29.630 0.00 0.00 35.03 5.92
117 118 8.795341 GTTCAATCTTTTAAGTAATAAAGCGCC 58.205 33.333 2.29 0.00 35.03 6.53
118 119 7.477494 TCAATCTTTTAAGTAATAAAGCGCCC 58.523 34.615 2.29 0.00 35.03 6.13
119 120 5.823209 TCTTTTAAGTAATAAAGCGCCCC 57.177 39.130 2.29 0.00 35.03 5.80
120 121 5.503002 TCTTTTAAGTAATAAAGCGCCCCT 58.497 37.500 2.29 0.00 35.03 4.79
121 122 5.947566 TCTTTTAAGTAATAAAGCGCCCCTT 59.052 36.000 2.29 0.00 35.03 3.95
122 123 6.434965 TCTTTTAAGTAATAAAGCGCCCCTTT 59.565 34.615 2.29 0.06 45.44 3.11
123 124 6.593268 TTTAAGTAATAAAGCGCCCCTTTT 57.407 33.333 2.29 0.00 40.85 2.27
124 125 4.713824 AAGTAATAAAGCGCCCCTTTTC 57.286 40.909 2.29 0.00 40.85 2.29
125 126 3.692690 AGTAATAAAGCGCCCCTTTTCA 58.307 40.909 2.29 0.00 40.85 2.69
126 127 4.083565 AGTAATAAAGCGCCCCTTTTCAA 58.916 39.130 2.29 0.00 40.85 2.69
127 128 4.525100 AGTAATAAAGCGCCCCTTTTCAAA 59.475 37.500 2.29 0.00 40.85 2.69
128 129 4.344359 AATAAAGCGCCCCTTTTCAAAA 57.656 36.364 2.29 0.00 40.85 2.44
129 130 2.700722 AAAGCGCCCCTTTTCAAAAA 57.299 40.000 2.29 0.00 40.85 1.94
161 162 8.980481 AAAAGGTTCGATGTTCAATATATCCT 57.020 30.769 0.00 0.00 0.00 3.24
162 163 7.969536 AAGGTTCGATGTTCAATATATCCTG 57.030 36.000 0.00 0.00 0.00 3.86
163 164 5.934625 AGGTTCGATGTTCAATATATCCTGC 59.065 40.000 0.00 0.00 0.00 4.85
164 165 5.934625 GGTTCGATGTTCAATATATCCTGCT 59.065 40.000 0.00 0.00 0.00 4.24
165 166 6.091441 GGTTCGATGTTCAATATATCCTGCTC 59.909 42.308 0.00 0.00 0.00 4.26
166 167 5.724328 TCGATGTTCAATATATCCTGCTCC 58.276 41.667 0.00 0.00 0.00 4.70
167 168 5.245977 TCGATGTTCAATATATCCTGCTCCA 59.754 40.000 0.00 0.00 0.00 3.86
168 169 5.579904 CGATGTTCAATATATCCTGCTCCAG 59.420 44.000 0.00 0.00 0.00 3.86
169 170 5.894298 TGTTCAATATATCCTGCTCCAGT 57.106 39.130 0.00 0.00 0.00 4.00
170 171 6.252599 TGTTCAATATATCCTGCTCCAGTT 57.747 37.500 0.00 0.00 0.00 3.16
171 172 6.057533 TGTTCAATATATCCTGCTCCAGTTG 58.942 40.000 0.00 0.00 0.00 3.16
172 173 4.645535 TCAATATATCCTGCTCCAGTTGC 58.354 43.478 0.00 0.00 0.00 4.17
173 174 3.710209 ATATATCCTGCTCCAGTTGCC 57.290 47.619 0.00 0.00 0.00 4.52
174 175 1.516110 ATATCCTGCTCCAGTTGCCT 58.484 50.000 0.00 0.00 0.00 4.75
175 176 0.833287 TATCCTGCTCCAGTTGCCTC 59.167 55.000 0.00 0.00 0.00 4.70
176 177 0.913451 ATCCTGCTCCAGTTGCCTCT 60.913 55.000 0.00 0.00 0.00 3.69
177 178 1.376942 CCTGCTCCAGTTGCCTCTG 60.377 63.158 0.00 0.00 35.45 3.35
178 179 1.374190 CTGCTCCAGTTGCCTCTGT 59.626 57.895 4.89 0.00 34.02 3.41
179 180 0.954449 CTGCTCCAGTTGCCTCTGTG 60.954 60.000 4.89 0.04 34.02 3.66
180 181 1.372683 GCTCCAGTTGCCTCTGTGA 59.627 57.895 4.89 2.12 34.02 3.58
181 182 0.952984 GCTCCAGTTGCCTCTGTGAC 60.953 60.000 4.89 0.00 34.02 3.67
182 183 0.321122 CTCCAGTTGCCTCTGTGACC 60.321 60.000 4.89 0.00 34.02 4.02
183 184 1.053835 TCCAGTTGCCTCTGTGACCA 61.054 55.000 4.89 0.00 34.02 4.02
184 185 0.179020 CCAGTTGCCTCTGTGACCAA 60.179 55.000 4.89 0.00 34.02 3.67
185 186 0.947244 CAGTTGCCTCTGTGACCAAC 59.053 55.000 0.00 0.00 38.20 3.77
186 187 0.546122 AGTTGCCTCTGTGACCAACA 59.454 50.000 0.00 0.00 39.86 3.33
187 188 1.143684 AGTTGCCTCTGTGACCAACAT 59.856 47.619 0.00 0.00 39.86 2.71
188 189 1.537202 GTTGCCTCTGTGACCAACATC 59.463 52.381 0.00 0.00 38.39 3.06
189 190 0.036732 TGCCTCTGTGACCAACATCC 59.963 55.000 0.00 0.00 38.39 3.51
190 191 0.036732 GCCTCTGTGACCAACATCCA 59.963 55.000 0.00 0.00 38.39 3.41
191 192 1.813513 CCTCTGTGACCAACATCCAC 58.186 55.000 0.00 0.00 38.39 4.02
192 193 1.349026 CCTCTGTGACCAACATCCACT 59.651 52.381 0.00 0.00 38.39 4.00
193 194 2.420642 CTCTGTGACCAACATCCACTG 58.579 52.381 0.00 0.00 38.39 3.66
194 195 1.768275 TCTGTGACCAACATCCACTGT 59.232 47.619 0.00 0.00 38.39 3.55
201 202 3.395210 AACATCCACTGTTGTCGCA 57.605 47.368 0.00 0.00 46.37 5.10
202 203 0.944386 AACATCCACTGTTGTCGCAC 59.056 50.000 0.00 0.00 46.37 5.34
203 204 0.106708 ACATCCACTGTTGTCGCACT 59.893 50.000 0.00 0.00 32.90 4.40
204 205 1.343142 ACATCCACTGTTGTCGCACTA 59.657 47.619 0.00 0.00 32.90 2.74
205 206 2.028112 ACATCCACTGTTGTCGCACTAT 60.028 45.455 0.00 0.00 32.90 2.12
206 207 2.831685 TCCACTGTTGTCGCACTATT 57.168 45.000 0.00 0.00 0.00 1.73
207 208 2.412870 TCCACTGTTGTCGCACTATTG 58.587 47.619 0.00 0.00 0.00 1.90
208 209 1.135972 CCACTGTTGTCGCACTATTGC 60.136 52.381 0.00 0.00 46.21 3.56
224 225 1.077501 TGCCAGTGCAATCCCTAGC 60.078 57.895 0.00 0.00 46.66 3.42
225 226 1.225704 GCCAGTGCAATCCCTAGCT 59.774 57.895 0.00 0.00 37.47 3.32
226 227 0.817229 GCCAGTGCAATCCCTAGCTC 60.817 60.000 0.00 0.00 37.47 4.09
227 228 0.531532 CCAGTGCAATCCCTAGCTCG 60.532 60.000 0.00 0.00 0.00 5.03
228 229 0.531532 CAGTGCAATCCCTAGCTCGG 60.532 60.000 0.00 0.00 0.00 4.63
229 230 1.889573 GTGCAATCCCTAGCTCGGC 60.890 63.158 0.00 0.00 0.00 5.54
230 231 2.066393 TGCAATCCCTAGCTCGGCT 61.066 57.895 0.00 3.87 43.41 5.52
231 232 1.301322 GCAATCCCTAGCTCGGCTC 60.301 63.158 0.00 0.00 40.44 4.70
232 233 1.006805 CAATCCCTAGCTCGGCTCG 60.007 63.158 0.00 0.00 40.44 5.03
233 234 2.862223 AATCCCTAGCTCGGCTCGC 61.862 63.158 0.00 0.00 40.44 5.03
234 235 3.801068 ATCCCTAGCTCGGCTCGCT 62.801 63.158 0.00 3.01 40.44 4.93
235 236 3.972276 CCCTAGCTCGGCTCGCTC 61.972 72.222 0.00 0.00 40.44 5.03
236 237 3.972276 CCTAGCTCGGCTCGCTCC 61.972 72.222 1.46 0.00 40.44 4.70
237 238 3.212682 CTAGCTCGGCTCGCTCCA 61.213 66.667 1.46 0.00 40.44 3.86
238 239 2.519541 TAGCTCGGCTCGCTCCAT 60.520 61.111 1.46 0.00 40.44 3.41
239 240 2.470801 CTAGCTCGGCTCGCTCCATC 62.471 65.000 1.46 0.00 40.44 3.51
240 241 4.959596 GCTCGGCTCGCTCCATCC 62.960 72.222 0.00 0.00 0.00 3.51
241 242 4.292178 CTCGGCTCGCTCCATCCC 62.292 72.222 0.00 0.00 0.00 3.85
249 250 4.424711 GCTCCATCCCCGCCAACA 62.425 66.667 0.00 0.00 0.00 3.33
250 251 2.354729 CTCCATCCCCGCCAACAA 59.645 61.111 0.00 0.00 0.00 2.83
251 252 2.034999 TCCATCCCCGCCAACAAC 59.965 61.111 0.00 0.00 0.00 3.32
252 253 2.035626 CCATCCCCGCCAACAACT 59.964 61.111 0.00 0.00 0.00 3.16
253 254 1.202099 TCCATCCCCGCCAACAACTA 61.202 55.000 0.00 0.00 0.00 2.24
254 255 1.029947 CCATCCCCGCCAACAACTAC 61.030 60.000 0.00 0.00 0.00 2.73
255 256 1.029947 CATCCCCGCCAACAACTACC 61.030 60.000 0.00 0.00 0.00 3.18
256 257 1.493854 ATCCCCGCCAACAACTACCA 61.494 55.000 0.00 0.00 0.00 3.25
257 258 1.969589 CCCCGCCAACAACTACCAC 60.970 63.158 0.00 0.00 0.00 4.16
258 259 2.322081 CCCGCCAACAACTACCACG 61.322 63.158 0.00 0.00 0.00 4.94
259 260 2.322081 CCGCCAACAACTACCACGG 61.322 63.158 0.00 0.00 0.00 4.94
260 261 1.595929 CGCCAACAACTACCACGGT 60.596 57.895 0.00 0.00 0.00 4.83
261 262 1.562575 CGCCAACAACTACCACGGTC 61.563 60.000 0.00 0.00 0.00 4.79
262 263 0.533308 GCCAACAACTACCACGGTCA 60.533 55.000 0.00 0.00 0.00 4.02
263 264 1.880646 GCCAACAACTACCACGGTCAT 60.881 52.381 0.00 0.00 0.00 3.06
264 265 2.073816 CCAACAACTACCACGGTCATC 58.926 52.381 0.00 0.00 0.00 2.92
265 266 1.724623 CAACAACTACCACGGTCATCG 59.275 52.381 0.00 0.00 45.88 3.84
266 267 0.245539 ACAACTACCACGGTCATCGG 59.754 55.000 0.00 0.00 44.45 4.18
267 268 1.082117 CAACTACCACGGTCATCGGC 61.082 60.000 0.00 0.00 44.45 5.54
268 269 2.278596 CTACCACGGTCATCGGCG 60.279 66.667 0.00 0.00 44.45 6.46
269 270 3.768185 CTACCACGGTCATCGGCGG 62.768 68.421 7.21 0.00 44.45 6.13
289 290 4.803426 CAGCTCACGGTCCCGCTC 62.803 72.222 5.47 0.00 44.19 5.03
291 292 3.138798 GCTCACGGTCCCGCTCTA 61.139 66.667 5.47 0.00 44.19 2.43
292 293 2.491022 GCTCACGGTCCCGCTCTAT 61.491 63.158 5.47 0.00 44.19 1.98
293 294 1.170919 GCTCACGGTCCCGCTCTATA 61.171 60.000 5.47 0.00 44.19 1.31
294 295 1.535833 CTCACGGTCCCGCTCTATAT 58.464 55.000 5.47 0.00 44.19 0.86
295 296 2.708051 CTCACGGTCCCGCTCTATATA 58.292 52.381 5.47 0.00 44.19 0.86
296 297 2.678836 CTCACGGTCCCGCTCTATATAG 59.321 54.545 5.47 3.10 44.19 1.31
297 298 2.039480 TCACGGTCCCGCTCTATATAGT 59.961 50.000 9.58 0.00 44.19 2.12
298 299 2.419324 CACGGTCCCGCTCTATATAGTC 59.581 54.545 9.58 2.81 44.19 2.59
299 300 1.664659 CGGTCCCGCTCTATATAGTCG 59.335 57.143 9.58 13.05 0.00 4.18
300 301 1.401199 GGTCCCGCTCTATATAGTCGC 59.599 57.143 9.58 11.82 0.00 5.19
301 302 1.401199 GTCCCGCTCTATATAGTCGCC 59.599 57.143 9.58 3.11 0.00 5.54
302 303 1.003928 TCCCGCTCTATATAGTCGCCA 59.996 52.381 9.58 2.26 0.00 5.69
303 304 1.132643 CCCGCTCTATATAGTCGCCAC 59.867 57.143 9.58 0.00 0.00 5.01
304 305 1.810755 CCGCTCTATATAGTCGCCACA 59.189 52.381 9.58 0.00 0.00 4.17
305 306 2.414293 CCGCTCTATATAGTCGCCACAC 60.414 54.545 9.58 0.00 0.00 3.82
306 307 2.414293 CGCTCTATATAGTCGCCACACC 60.414 54.545 9.58 0.00 0.00 4.16
307 308 2.820787 GCTCTATATAGTCGCCACACCT 59.179 50.000 9.58 0.00 0.00 4.00
308 309 3.366476 GCTCTATATAGTCGCCACACCTG 60.366 52.174 9.58 0.00 0.00 4.00
309 310 2.557056 TCTATATAGTCGCCACACCTGC 59.443 50.000 9.58 0.00 0.00 4.85
310 311 0.393077 ATATAGTCGCCACACCTGCC 59.607 55.000 0.00 0.00 0.00 4.85
311 312 1.682451 TATAGTCGCCACACCTGCCC 61.682 60.000 0.00 0.00 0.00 5.36
319 320 4.269523 ACACCTGCCCACACGCAT 62.270 61.111 0.00 0.00 38.30 4.73
320 321 3.740397 CACCTGCCCACACGCATG 61.740 66.667 0.00 0.00 38.30 4.06
323 324 3.807538 CTGCCCACACGCATGCTC 61.808 66.667 17.13 0.00 38.30 4.26
326 327 2.821366 CCCACACGCATGCTCCTC 60.821 66.667 17.13 0.00 0.00 3.71
327 328 3.190849 CCACACGCATGCTCCTCG 61.191 66.667 17.13 1.61 0.00 4.63
328 329 2.125952 CACACGCATGCTCCTCGA 60.126 61.111 17.13 0.00 0.00 4.04
329 330 1.737735 CACACGCATGCTCCTCGAA 60.738 57.895 17.13 0.00 0.00 3.71
330 331 1.446792 ACACGCATGCTCCTCGAAG 60.447 57.895 17.13 0.00 0.00 3.79
331 332 2.510238 ACGCATGCTCCTCGAAGC 60.510 61.111 17.13 2.02 42.82 3.86
332 333 3.267860 CGCATGCTCCTCGAAGCC 61.268 66.667 17.13 0.00 41.77 4.35
333 334 3.267860 GCATGCTCCTCGAAGCCG 61.268 66.667 11.37 0.00 41.77 5.52
334 335 2.587194 CATGCTCCTCGAAGCCGG 60.587 66.667 6.64 0.00 41.77 6.13
335 336 3.854669 ATGCTCCTCGAAGCCGGG 61.855 66.667 2.18 0.00 41.77 5.73
341 342 2.758737 CTCGAAGCCGGGGGTACT 60.759 66.667 2.18 0.00 36.24 2.73
342 343 2.757099 TCGAAGCCGGGGGTACTC 60.757 66.667 2.18 0.00 36.24 2.59
355 356 1.677637 GGTACTCCCTCCCTTGCTCG 61.678 65.000 0.00 0.00 0.00 5.03
369 370 3.023949 GCTCGTGGTGCTCCATCCT 62.024 63.158 11.31 0.00 46.20 3.24
370 371 1.142748 CTCGTGGTGCTCCATCCTC 59.857 63.158 11.31 0.00 46.20 3.71
371 372 1.607801 CTCGTGGTGCTCCATCCTCA 61.608 60.000 11.31 0.00 46.20 3.86
372 373 1.448540 CGTGGTGCTCCATCCTCAC 60.449 63.158 11.31 0.00 46.20 3.51
386 387 1.843851 TCCTCACTGGAAACAACCACT 59.156 47.619 0.00 0.00 42.94 4.00
388 389 2.618709 CCTCACTGGAAACAACCACTTC 59.381 50.000 0.00 0.00 42.06 3.01
389 390 3.545703 CTCACTGGAAACAACCACTTCT 58.454 45.455 0.00 0.00 42.06 2.85
392 393 3.443681 CACTGGAAACAACCACTTCTGTT 59.556 43.478 0.00 0.00 42.06 3.16
394 395 2.757868 TGGAAACAACCACTTCTGTTGG 59.242 45.455 7.89 0.00 45.72 3.77
396 397 1.846007 AACAACCACTTCTGTTGGCA 58.154 45.000 7.89 0.00 45.72 4.92
397 398 1.392589 ACAACCACTTCTGTTGGCAG 58.607 50.000 7.89 0.00 45.72 4.85
414 415 2.511600 GATGAGCCCGTGGAACCG 60.512 66.667 0.00 0.00 0.00 4.44
436 437 1.519455 GAGATGCTTGTCCCCGTCG 60.519 63.158 0.00 0.00 0.00 5.12
446 447 3.136123 CCCCGTCGGCGAGTAGAA 61.136 66.667 12.93 0.00 41.33 2.10
450 451 0.027324 CCGTCGGCGAGTAGAAGTAC 59.973 60.000 12.93 0.00 41.33 2.73
453 454 2.783333 GTCGGCGAGTAGAAGTACAAG 58.217 52.381 11.20 0.00 0.00 3.16
461 462 4.022589 CGAGTAGAAGTACAAGTTGTGGGA 60.023 45.833 18.90 0.00 0.00 4.37
464 465 4.086706 AGAAGTACAAGTTGTGGGAAGG 57.913 45.455 18.90 0.00 0.00 3.46
472 473 0.251209 GTTGTGGGAAGGGGAGGTTC 60.251 60.000 0.00 0.00 0.00 3.62
474 475 1.850755 GTGGGAAGGGGAGGTTCCA 60.851 63.158 4.35 0.00 44.75 3.53
478 479 0.038310 GGAAGGGGAGGTTCCAGTTG 59.962 60.000 0.00 0.00 42.79 3.16
479 480 1.064825 GAAGGGGAGGTTCCAGTTGA 58.935 55.000 0.00 0.00 38.64 3.18
489 490 2.147150 GTTCCAGTTGAGAGAGGTTGC 58.853 52.381 0.00 0.00 0.00 4.17
501 502 2.945668 GAGAGGTTGCCATGTATGTTCC 59.054 50.000 0.00 0.00 0.00 3.62
503 504 3.010584 AGAGGTTGCCATGTATGTTCCTT 59.989 43.478 0.00 0.00 0.00 3.36
504 505 3.091545 AGGTTGCCATGTATGTTCCTTG 58.908 45.455 0.00 0.00 0.00 3.61
505 506 2.417243 GGTTGCCATGTATGTTCCTTGC 60.417 50.000 0.00 0.00 0.00 4.01
506 507 2.493278 GTTGCCATGTATGTTCCTTGCT 59.507 45.455 0.00 0.00 0.00 3.91
507 508 2.368439 TGCCATGTATGTTCCTTGCTC 58.632 47.619 0.00 0.00 0.00 4.26
508 509 2.025981 TGCCATGTATGTTCCTTGCTCT 60.026 45.455 0.00 0.00 0.00 4.09
519 520 1.580845 CCTTGCTCTGGTGCCTTTCG 61.581 60.000 0.00 0.00 0.00 3.46
520 521 0.886490 CTTGCTCTGGTGCCTTTCGT 60.886 55.000 0.00 0.00 0.00 3.85
524 525 1.856265 CTCTGGTGCCTTTCGTTGCC 61.856 60.000 0.00 0.00 0.00 4.52
526 527 4.700365 GGTGCCTTTCGTTGCCGC 62.700 66.667 0.00 0.00 0.00 6.53
530 531 3.656045 CCTTTCGTTGCCGCCGTT 61.656 61.111 0.00 0.00 0.00 4.44
546 547 0.238289 CGTTGGGCCGCATCATATTC 59.762 55.000 0.00 0.00 0.00 1.75
552 553 2.076863 GGCCGCATCATATTCTGTACC 58.923 52.381 0.00 0.00 0.00 3.34
555 556 3.613193 GCCGCATCATATTCTGTACCGTA 60.613 47.826 0.00 0.00 0.00 4.02
557 558 4.082949 CCGCATCATATTCTGTACCGTAGA 60.083 45.833 0.00 0.00 0.00 2.59
558 559 5.393135 CCGCATCATATTCTGTACCGTAGAT 60.393 44.000 0.00 0.00 0.00 1.98
560 561 6.390721 GCATCATATTCTGTACCGTAGATGT 58.609 40.000 0.00 0.00 0.00 3.06
569 570 1.319541 ACCGTAGATGTCGAGATGGG 58.680 55.000 0.00 0.00 0.00 4.00
578 579 2.034878 TGTCGAGATGGGAAGAGATGG 58.965 52.381 0.00 0.00 0.00 3.51
649 653 3.254060 ACGATGACCACTTTGAGATTCG 58.746 45.455 0.00 0.00 0.00 3.34
653 657 3.138304 TGACCACTTTGAGATTCGGTTG 58.862 45.455 0.00 0.00 0.00 3.77
657 661 1.073923 ACTTTGAGATTCGGTTGGCCT 59.926 47.619 3.32 0.00 0.00 5.19
666 670 4.643387 GGTTGGCCTGGTGTCGCT 62.643 66.667 3.32 0.00 0.00 4.93
667 671 3.050275 GTTGGCCTGGTGTCGCTC 61.050 66.667 3.32 0.00 0.00 5.03
668 672 3.555324 TTGGCCTGGTGTCGCTCA 61.555 61.111 3.32 0.00 0.00 4.26
699 703 0.881159 CTTCCGTTTGGCCACGTACA 60.881 55.000 3.88 0.00 38.57 2.90
721 725 6.451064 CAACCTGGTTGTATAAGATTTCCC 57.549 41.667 27.51 0.00 38.56 3.97
743 748 1.098050 CTATTGCCACCTGTTGCCTC 58.902 55.000 0.00 0.00 0.00 4.70
764 769 7.549134 TGCCTCGGAAATATGATCATTGTATAC 59.451 37.037 14.65 0.00 0.00 1.47
765 770 7.766278 GCCTCGGAAATATGATCATTGTATACT 59.234 37.037 14.65 0.00 0.00 2.12
767 772 9.860898 CTCGGAAATATGATCATTGTATACTCA 57.139 33.333 14.65 0.00 0.00 3.41
769 774 9.423061 CGGAAATATGATCATTGTATACTCACA 57.577 33.333 14.65 0.00 0.00 3.58
786 791 6.369059 ACTCACATCTAAATATGTTGCTGC 57.631 37.500 0.00 0.00 38.01 5.25
791 796 5.887598 ACATCTAAATATGTTGCTGCTTCCA 59.112 36.000 0.00 0.00 36.71 3.53
792 797 6.377996 ACATCTAAATATGTTGCTGCTTCCAA 59.622 34.615 0.00 0.00 36.71 3.53
794 799 7.225784 TCTAAATATGTTGCTGCTTCCAAAA 57.774 32.000 0.00 0.00 0.00 2.44
795 800 7.665690 TCTAAATATGTTGCTGCTTCCAAAAA 58.334 30.769 0.00 0.00 0.00 1.94
796 801 6.790285 AAATATGTTGCTGCTTCCAAAAAG 57.210 33.333 0.00 0.00 0.00 2.27
797 802 5.726980 ATATGTTGCTGCTTCCAAAAAGA 57.273 34.783 0.00 0.00 0.00 2.52
798 803 3.883830 TGTTGCTGCTTCCAAAAAGAA 57.116 38.095 0.00 0.00 0.00 2.52
799 804 4.199432 TGTTGCTGCTTCCAAAAAGAAA 57.801 36.364 0.00 0.00 0.00 2.52
800 805 4.573900 TGTTGCTGCTTCCAAAAAGAAAA 58.426 34.783 0.00 0.00 0.00 2.29
843 853 6.983890 GGAAACAGCATGGAACTTTCTTTTTA 59.016 34.615 0.00 0.00 43.62 1.52
872 890 5.864418 AGGAAATAGTATGTTGCCGACTA 57.136 39.130 0.00 0.00 0.00 2.59
925 946 4.335647 CAGGCCGACCCAACAGCT 62.336 66.667 0.00 0.00 36.11 4.24
936 971 1.023513 CCAACAGCTGTAGCAGGAGC 61.024 60.000 22.01 0.00 45.16 4.70
942 977 1.153745 CTGTAGCAGGAGCCGTCAC 60.154 63.158 0.00 0.00 43.56 3.67
943 978 1.877576 CTGTAGCAGGAGCCGTCACA 61.878 60.000 0.00 0.00 43.56 3.58
945 980 0.528684 GTAGCAGGAGCCGTCACATC 60.529 60.000 0.00 0.00 43.56 3.06
946 981 0.684479 TAGCAGGAGCCGTCACATCT 60.684 55.000 0.00 0.00 43.56 2.90
947 982 1.078848 GCAGGAGCCGTCACATCTT 60.079 57.895 0.00 0.00 33.58 2.40
950 985 0.250513 AGGAGCCGTCACATCTTTCC 59.749 55.000 0.00 0.00 0.00 3.13
951 986 1.084370 GGAGCCGTCACATCTTTCCG 61.084 60.000 0.00 0.00 0.00 4.30
953 988 3.081133 CCGTCACATCTTTCCGCG 58.919 61.111 0.00 0.00 0.00 6.46
954 989 1.445410 CCGTCACATCTTTCCGCGA 60.445 57.895 8.23 0.00 0.00 5.87
955 990 1.683790 CCGTCACATCTTTCCGCGAC 61.684 60.000 8.23 0.00 0.00 5.19
956 991 0.732880 CGTCACATCTTTCCGCGACT 60.733 55.000 8.23 0.00 0.00 4.18
957 992 0.992802 GTCACATCTTTCCGCGACTC 59.007 55.000 8.23 0.00 0.00 3.36
958 993 0.601057 TCACATCTTTCCGCGACTCA 59.399 50.000 8.23 0.00 0.00 3.41
965 1000 0.034198 TTTCCGCGACTCAACCATGA 59.966 50.000 8.23 0.00 0.00 3.07
966 1001 0.034198 TTCCGCGACTCAACCATGAA 59.966 50.000 8.23 0.00 34.49 2.57
972 1007 2.476619 GCGACTCAACCATGAATATCCG 59.523 50.000 0.00 0.00 34.49 4.18
1103 1173 1.070105 CCGACTTCCGAACCAACCA 59.930 57.895 0.00 0.00 41.76 3.67
1180 1255 4.704103 AGCGTCCCAGGGCTCTCA 62.704 66.667 0.00 0.00 33.32 3.27
1392 1479 4.840005 GGGGCTGCTCTACACCGC 62.840 72.222 0.00 0.00 0.00 5.68
1403 1490 1.131693 TCTACACCGCGTACTGACATG 59.868 52.381 4.92 0.00 0.00 3.21
1404 1491 0.171679 TACACCGCGTACTGACATGG 59.828 55.000 4.92 0.00 0.00 3.66
1407 1494 1.872234 CCGCGTACTGACATGGTCG 60.872 63.158 4.92 0.00 34.95 4.79
1426 1513 1.337823 CGGACCGGACAGTTTCTTCAT 60.338 52.381 9.46 0.00 0.00 2.57
1434 1521 4.610680 CGGACAGTTTCTTCATTTTCGACC 60.611 45.833 0.00 0.00 0.00 4.79
1449 1537 8.289618 TCATTTTCGACCTTTAGTTGATTCTTG 58.710 33.333 0.00 0.00 38.74 3.02
1452 1540 6.049955 TCGACCTTTAGTTGATTCTTGGAT 57.950 37.500 0.00 0.00 33.65 3.41
1453 1541 6.472887 TCGACCTTTAGTTGATTCTTGGATT 58.527 36.000 0.00 0.00 33.65 3.01
1480 1572 3.059597 GCTGCGGAATATGTGTGTATGTC 60.060 47.826 0.00 0.00 0.00 3.06
1481 1573 3.120041 TGCGGAATATGTGTGTATGTCG 58.880 45.455 0.00 0.00 0.00 4.35
1482 1574 2.475111 GCGGAATATGTGTGTATGTCGG 59.525 50.000 0.00 0.00 0.00 4.79
1483 1575 3.713288 CGGAATATGTGTGTATGTCGGT 58.287 45.455 0.00 0.00 0.00 4.69
1490 1600 2.158943 TGTGTGTATGTCGGTTGGTTGA 60.159 45.455 0.00 0.00 0.00 3.18
1508 1618 5.065090 TGGTTGAAGCATCGATCTGTAAATG 59.935 40.000 0.00 0.00 0.00 2.32
1512 1627 2.541346 AGCATCGATCTGTAAATGCACG 59.459 45.455 8.68 0.00 45.39 5.34
1517 1632 5.183014 TCGATCTGTAAATGCACGAGTAT 57.817 39.130 0.00 0.00 0.00 2.12
1552 1670 1.066152 GGCTGATTCTTTCGGGATTGC 59.934 52.381 0.00 0.00 0.00 3.56
1645 2157 1.856265 GCAAGAACCGGCCAGAAGTG 61.856 60.000 0.00 0.00 0.00 3.16
1669 2194 3.803162 GGAGGGAGGGAGCAAGCC 61.803 72.222 0.00 0.00 0.00 4.35
1684 2209 2.364002 GCAAGCCCACAAAAAGGAAGTA 59.636 45.455 0.00 0.00 0.00 2.24
1785 2310 8.162880 GTGATTAACTAGTGTTCAGTCAATTCG 58.837 37.037 0.00 0.00 37.59 3.34
1844 2379 4.385405 GCCGAGTCAGCTGCACCT 62.385 66.667 9.47 4.33 0.00 4.00
1845 2380 2.433838 CCGAGTCAGCTGCACCTG 60.434 66.667 9.47 2.36 0.00 4.00
1846 2381 3.117171 CGAGTCAGCTGCACCTGC 61.117 66.667 9.47 0.00 42.50 4.85
1861 2396 0.968901 CCTGCACCACCATGCTTGAT 60.969 55.000 0.22 0.00 46.28 2.57
1887 2422 7.722728 TCTTGAAGCATGAGAGGCATTAATTAT 59.277 33.333 0.00 0.00 34.15 1.28
1894 2429 4.997395 TGAGAGGCATTAATTATTCGAGCC 59.003 41.667 3.17 3.17 40.85 4.70
1937 2481 9.878667 TTAACAGATATCTGAAATTACAACCGA 57.121 29.630 34.16 8.09 46.59 4.69
1984 2552 4.815269 ACTGAGCAACTGTGTCTTATCTC 58.185 43.478 0.00 0.00 0.00 2.75
1985 2553 4.281941 ACTGAGCAACTGTGTCTTATCTCA 59.718 41.667 0.00 0.00 0.00 3.27
1998 2566 2.602257 TATCTCACATGGTGAAGGCG 57.398 50.000 0.00 0.00 42.26 5.52
2013 2582 3.057806 TGAAGGCGGCTAAAAGTTTAAGC 60.058 43.478 13.71 0.00 0.00 3.09
2124 2694 7.939039 AGTCTTCATTTTTCTACACCAAGATGA 59.061 33.333 0.00 0.00 0.00 2.92
2131 2701 2.095415 TCTACACCAAGATGACGTGACG 60.095 50.000 2.24 2.24 0.00 4.35
2132 2702 0.319555 ACACCAAGATGACGTGACGG 60.320 55.000 10.66 0.00 0.00 4.79
2133 2703 0.038618 CACCAAGATGACGTGACGGA 60.039 55.000 10.66 0.00 0.00 4.69
2136 2706 2.289444 ACCAAGATGACGTGACGGATTT 60.289 45.455 10.66 0.00 0.00 2.17
2161 2783 2.135933 CTTCTCAACCGCTCGAACTTT 58.864 47.619 0.00 0.00 0.00 2.66
2185 2807 1.470285 GCGAACCCTGCGTGTCTAATA 60.470 52.381 0.00 0.00 0.00 0.98
2218 2862 2.099141 TGTTCTCTACAGCACATGCC 57.901 50.000 0.00 0.00 43.38 4.40
2222 2866 1.001974 TCTCTACAGCACATGCCGTTT 59.998 47.619 0.00 0.00 43.38 3.60
2254 2898 4.843728 TCAATCGGCCAGAGTAATTTCTT 58.156 39.130 2.24 0.00 0.00 2.52
2255 2899 5.984725 TCAATCGGCCAGAGTAATTTCTTA 58.015 37.500 2.24 0.00 0.00 2.10
2309 2979 2.109799 CCGCAGCCTGACCTATGG 59.890 66.667 0.00 0.00 0.00 2.74
2395 3107 5.411361 TGAACGGAAACTACATCATGGAAAG 59.589 40.000 0.00 0.00 0.00 2.62
2410 3122 4.715534 TGGAAAGTCCCATTGTCTTACA 57.284 40.909 0.00 0.00 35.03 2.41
2417 3129 6.681729 AGTCCCATTGTCTTACAGAACTAA 57.318 37.500 0.00 0.00 0.00 2.24
2472 3184 2.027751 GCCGCATCGTCCTCTACC 59.972 66.667 0.00 0.00 0.00 3.18
2592 3304 0.112606 TTGGGGTCTCTGTCTCGTCT 59.887 55.000 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.034767 CCAGGTGTCTGCATGTGGAT 60.035 55.000 0.00 0.00 39.61 3.41
1 2 1.376086 CCAGGTGTCTGCATGTGGA 59.624 57.895 0.00 0.00 39.61 4.02
2 3 2.338015 GCCAGGTGTCTGCATGTGG 61.338 63.158 0.00 0.00 39.61 4.17
3 4 1.174078 TTGCCAGGTGTCTGCATGTG 61.174 55.000 0.00 0.00 39.61 3.21
4 5 0.467844 TTTGCCAGGTGTCTGCATGT 60.468 50.000 0.00 0.00 39.61 3.21
5 6 0.892755 ATTTGCCAGGTGTCTGCATG 59.107 50.000 0.00 0.00 39.61 4.06
6 7 1.180029 GATTTGCCAGGTGTCTGCAT 58.820 50.000 0.00 0.00 39.61 3.96
7 8 0.178995 TGATTTGCCAGGTGTCTGCA 60.179 50.000 0.00 0.00 39.61 4.41
8 9 0.961019 TTGATTTGCCAGGTGTCTGC 59.039 50.000 0.00 0.00 39.61 4.26
9 10 3.508793 AGATTTGATTTGCCAGGTGTCTG 59.491 43.478 0.00 0.00 40.59 3.51
10 11 3.771216 AGATTTGATTTGCCAGGTGTCT 58.229 40.909 0.00 0.00 0.00 3.41
11 12 4.525912 AAGATTTGATTTGCCAGGTGTC 57.474 40.909 0.00 0.00 0.00 3.67
12 13 4.082026 GCTAAGATTTGATTTGCCAGGTGT 60.082 41.667 0.00 0.00 0.00 4.16
13 14 4.427312 GCTAAGATTTGATTTGCCAGGTG 58.573 43.478 0.00 0.00 0.00 4.00
14 15 3.129287 CGCTAAGATTTGATTTGCCAGGT 59.871 43.478 0.00 0.00 0.00 4.00
15 16 3.699067 CGCTAAGATTTGATTTGCCAGG 58.301 45.455 0.00 0.00 0.00 4.45
16 17 3.111098 GCGCTAAGATTTGATTTGCCAG 58.889 45.455 0.00 0.00 0.00 4.85
17 18 2.491298 TGCGCTAAGATTTGATTTGCCA 59.509 40.909 9.73 0.00 0.00 4.92
18 19 3.111098 CTGCGCTAAGATTTGATTTGCC 58.889 45.455 9.73 0.00 0.00 4.52
19 20 2.533129 GCTGCGCTAAGATTTGATTTGC 59.467 45.455 9.73 0.00 0.00 3.68
20 21 3.761657 TGCTGCGCTAAGATTTGATTTG 58.238 40.909 9.73 0.00 0.00 2.32
21 22 4.439305 TTGCTGCGCTAAGATTTGATTT 57.561 36.364 9.73 0.00 0.00 2.17
22 23 4.096833 TGATTGCTGCGCTAAGATTTGATT 59.903 37.500 9.73 0.00 0.00 2.57
23 24 3.628942 TGATTGCTGCGCTAAGATTTGAT 59.371 39.130 9.73 0.00 0.00 2.57
24 25 3.009026 TGATTGCTGCGCTAAGATTTGA 58.991 40.909 9.73 0.00 0.00 2.69
25 26 3.409851 TGATTGCTGCGCTAAGATTTG 57.590 42.857 9.73 0.00 0.00 2.32
26 27 3.303593 CGATGATTGCTGCGCTAAGATTT 60.304 43.478 9.73 0.00 0.00 2.17
27 28 2.222678 CGATGATTGCTGCGCTAAGATT 59.777 45.455 9.73 0.00 0.00 2.40
28 29 1.797046 CGATGATTGCTGCGCTAAGAT 59.203 47.619 9.73 0.00 0.00 2.40
29 30 1.211743 CGATGATTGCTGCGCTAAGA 58.788 50.000 9.73 0.00 0.00 2.10
30 31 0.933097 ACGATGATTGCTGCGCTAAG 59.067 50.000 9.73 0.00 0.00 2.18
31 32 1.368641 AACGATGATTGCTGCGCTAA 58.631 45.000 9.73 1.37 0.00 3.09
32 33 1.368641 AAACGATGATTGCTGCGCTA 58.631 45.000 9.73 0.00 0.00 4.26
33 34 0.523072 AAAACGATGATTGCTGCGCT 59.477 45.000 9.73 0.00 0.00 5.92
34 35 0.909843 GAAAACGATGATTGCTGCGC 59.090 50.000 0.00 0.00 0.00 6.09
35 36 1.131126 AGGAAAACGATGATTGCTGCG 59.869 47.619 0.00 0.00 0.00 5.18
36 37 2.927553 AGGAAAACGATGATTGCTGC 57.072 45.000 0.00 0.00 0.00 5.25
37 38 3.365820 GCAAAGGAAAACGATGATTGCTG 59.634 43.478 0.00 0.00 38.79 4.41
38 39 3.578688 GCAAAGGAAAACGATGATTGCT 58.421 40.909 0.00 0.00 38.79 3.91
39 40 2.667969 GGCAAAGGAAAACGATGATTGC 59.332 45.455 0.00 0.00 40.56 3.56
40 41 3.911868 TGGCAAAGGAAAACGATGATTG 58.088 40.909 0.00 0.00 0.00 2.67
41 42 4.599047 TTGGCAAAGGAAAACGATGATT 57.401 36.364 0.00 0.00 0.00 2.57
42 43 4.599047 TTTGGCAAAGGAAAACGATGAT 57.401 36.364 8.93 0.00 0.00 2.45
43 44 4.555262 GATTTGGCAAAGGAAAACGATGA 58.445 39.130 18.61 0.00 0.00 2.92
44 45 3.679502 GGATTTGGCAAAGGAAAACGATG 59.320 43.478 18.61 0.00 0.00 3.84
45 46 3.306710 GGGATTTGGCAAAGGAAAACGAT 60.307 43.478 18.61 0.00 0.00 3.73
46 47 2.036604 GGGATTTGGCAAAGGAAAACGA 59.963 45.455 18.61 0.00 0.00 3.85
47 48 2.224161 TGGGATTTGGCAAAGGAAAACG 60.224 45.455 18.61 0.00 0.00 3.60
48 49 3.483808 TGGGATTTGGCAAAGGAAAAC 57.516 42.857 18.61 5.97 0.00 2.43
49 50 4.720775 ATTGGGATTTGGCAAAGGAAAA 57.279 36.364 18.61 10.43 0.00 2.29
50 51 4.720775 AATTGGGATTTGGCAAAGGAAA 57.279 36.364 18.61 10.10 0.00 3.13
51 52 4.720775 AAATTGGGATTTGGCAAAGGAA 57.279 36.364 18.61 8.24 34.26 3.36
52 53 5.250313 ACATAAATTGGGATTTGGCAAAGGA 59.750 36.000 18.61 0.00 36.22 3.36
53 54 5.499313 ACATAAATTGGGATTTGGCAAAGG 58.501 37.500 18.61 0.00 36.22 3.11
54 55 6.258507 GCTACATAAATTGGGATTTGGCAAAG 59.741 38.462 18.61 2.61 36.22 2.77
55 56 6.112058 GCTACATAAATTGGGATTTGGCAAA 58.888 36.000 16.01 16.01 36.22 3.68
56 57 5.396213 GGCTACATAAATTGGGATTTGGCAA 60.396 40.000 0.00 0.00 36.22 4.52
57 58 4.100808 GGCTACATAAATTGGGATTTGGCA 59.899 41.667 0.00 0.00 36.22 4.92
58 59 4.503123 GGGCTACATAAATTGGGATTTGGC 60.503 45.833 0.00 0.00 36.22 4.52
59 60 4.653341 TGGGCTACATAAATTGGGATTTGG 59.347 41.667 0.00 0.00 36.22 3.28
60 61 5.221501 CCTGGGCTACATAAATTGGGATTTG 60.222 44.000 0.00 0.00 36.22 2.32
61 62 4.901250 CCTGGGCTACATAAATTGGGATTT 59.099 41.667 0.00 0.00 38.88 2.17
62 63 4.078630 ACCTGGGCTACATAAATTGGGATT 60.079 41.667 0.00 0.00 0.00 3.01
63 64 3.467103 ACCTGGGCTACATAAATTGGGAT 59.533 43.478 0.00 0.00 0.00 3.85
64 65 2.856231 ACCTGGGCTACATAAATTGGGA 59.144 45.455 0.00 0.00 0.00 4.37
65 66 3.312736 ACCTGGGCTACATAAATTGGG 57.687 47.619 0.00 0.00 0.00 4.12
66 67 3.315191 CGAACCTGGGCTACATAAATTGG 59.685 47.826 0.00 0.00 0.00 3.16
67 68 4.196193 TCGAACCTGGGCTACATAAATTG 58.804 43.478 0.00 0.00 0.00 2.32
68 69 4.497291 TCGAACCTGGGCTACATAAATT 57.503 40.909 0.00 0.00 0.00 1.82
69 70 4.141482 ACATCGAACCTGGGCTACATAAAT 60.141 41.667 0.00 0.00 0.00 1.40
70 71 3.199071 ACATCGAACCTGGGCTACATAAA 59.801 43.478 0.00 0.00 0.00 1.40
71 72 2.769663 ACATCGAACCTGGGCTACATAA 59.230 45.455 0.00 0.00 0.00 1.90
72 73 2.394632 ACATCGAACCTGGGCTACATA 58.605 47.619 0.00 0.00 0.00 2.29
73 74 1.204146 ACATCGAACCTGGGCTACAT 58.796 50.000 0.00 0.00 0.00 2.29
74 75 0.981183 AACATCGAACCTGGGCTACA 59.019 50.000 0.00 0.00 0.00 2.74
75 76 1.066430 TGAACATCGAACCTGGGCTAC 60.066 52.381 0.00 0.00 0.00 3.58
76 77 1.271856 TGAACATCGAACCTGGGCTA 58.728 50.000 0.00 0.00 0.00 3.93
77 78 0.400213 TTGAACATCGAACCTGGGCT 59.600 50.000 0.00 0.00 0.00 5.19
78 79 1.401905 GATTGAACATCGAACCTGGGC 59.598 52.381 0.00 0.00 0.00 5.36
79 80 2.991250 AGATTGAACATCGAACCTGGG 58.009 47.619 0.00 0.00 0.00 4.45
80 81 5.376854 AAAAGATTGAACATCGAACCTGG 57.623 39.130 0.00 0.00 0.00 4.45
81 82 7.584987 ACTTAAAAGATTGAACATCGAACCTG 58.415 34.615 0.00 0.00 0.00 4.00
82 83 7.745620 ACTTAAAAGATTGAACATCGAACCT 57.254 32.000 0.00 0.00 0.00 3.50
90 91 9.337091 GCGCTTTATTACTTAAAAGATTGAACA 57.663 29.630 0.00 0.00 35.19 3.18
91 92 8.795341 GGCGCTTTATTACTTAAAAGATTGAAC 58.205 33.333 7.64 0.00 35.19 3.18
92 93 7.971722 GGGCGCTTTATTACTTAAAAGATTGAA 59.028 33.333 7.64 0.00 35.19 2.69
93 94 7.415877 GGGGCGCTTTATTACTTAAAAGATTGA 60.416 37.037 7.64 0.00 35.19 2.57
94 95 6.695713 GGGGCGCTTTATTACTTAAAAGATTG 59.304 38.462 7.64 0.00 35.19 2.67
95 96 6.605995 AGGGGCGCTTTATTACTTAAAAGATT 59.394 34.615 7.64 0.00 35.19 2.40
96 97 6.127101 AGGGGCGCTTTATTACTTAAAAGAT 58.873 36.000 7.64 0.00 35.19 2.40
97 98 5.503002 AGGGGCGCTTTATTACTTAAAAGA 58.497 37.500 7.64 0.00 35.19 2.52
98 99 5.830000 AGGGGCGCTTTATTACTTAAAAG 57.170 39.130 7.64 0.00 36.09 2.27
99 100 6.593268 AAAGGGGCGCTTTATTACTTAAAA 57.407 33.333 25.79 0.00 29.52 1.52
100 101 6.208994 TGAAAAGGGGCGCTTTATTACTTAAA 59.791 34.615 26.94 3.17 0.00 1.52
101 102 5.711036 TGAAAAGGGGCGCTTTATTACTTAA 59.289 36.000 26.94 3.78 0.00 1.85
102 103 5.254901 TGAAAAGGGGCGCTTTATTACTTA 58.745 37.500 26.94 7.83 0.00 2.24
103 104 4.083565 TGAAAAGGGGCGCTTTATTACTT 58.916 39.130 26.94 12.46 0.00 2.24
104 105 3.692690 TGAAAAGGGGCGCTTTATTACT 58.307 40.909 26.94 13.15 0.00 2.24
105 106 4.443913 TTGAAAAGGGGCGCTTTATTAC 57.556 40.909 26.94 18.47 0.00 1.89
106 107 5.470047 TTTTGAAAAGGGGCGCTTTATTA 57.530 34.783 26.94 14.76 0.00 0.98
107 108 4.344359 TTTTGAAAAGGGGCGCTTTATT 57.656 36.364 26.94 14.56 0.00 1.40
108 109 4.344359 TTTTTGAAAAGGGGCGCTTTAT 57.656 36.364 26.94 17.61 0.00 1.40
109 110 3.821421 TTTTTGAAAAGGGGCGCTTTA 57.179 38.095 26.94 12.11 0.00 1.85
110 111 2.700722 TTTTTGAAAAGGGGCGCTTT 57.299 40.000 22.23 22.23 0.00 3.51
135 136 9.408648 AGGATATATTGAACATCGAACCTTTTT 57.591 29.630 0.00 0.00 0.00 1.94
136 137 8.840321 CAGGATATATTGAACATCGAACCTTTT 58.160 33.333 0.00 0.00 0.00 2.27
137 138 7.041098 GCAGGATATATTGAACATCGAACCTTT 60.041 37.037 0.00 0.00 0.00 3.11
138 139 6.428159 GCAGGATATATTGAACATCGAACCTT 59.572 38.462 0.00 0.00 0.00 3.50
139 140 5.934625 GCAGGATATATTGAACATCGAACCT 59.065 40.000 0.00 0.00 0.00 3.50
140 141 5.934625 AGCAGGATATATTGAACATCGAACC 59.065 40.000 0.00 0.00 0.00 3.62
141 142 6.091441 GGAGCAGGATATATTGAACATCGAAC 59.909 42.308 0.00 0.00 0.00 3.95
142 143 6.166279 GGAGCAGGATATATTGAACATCGAA 58.834 40.000 0.00 0.00 0.00 3.71
143 144 5.245977 TGGAGCAGGATATATTGAACATCGA 59.754 40.000 0.00 0.00 0.00 3.59
144 145 5.482006 TGGAGCAGGATATATTGAACATCG 58.518 41.667 0.00 0.00 0.00 3.84
145 146 6.471146 ACTGGAGCAGGATATATTGAACATC 58.529 40.000 0.00 0.00 35.51 3.06
146 147 6.445451 ACTGGAGCAGGATATATTGAACAT 57.555 37.500 0.00 0.00 35.51 2.71
147 148 5.894298 ACTGGAGCAGGATATATTGAACA 57.106 39.130 0.00 0.00 35.51 3.18
148 149 5.049129 GCAACTGGAGCAGGATATATTGAAC 60.049 44.000 0.00 0.00 35.51 3.18
149 150 5.065914 GCAACTGGAGCAGGATATATTGAA 58.934 41.667 0.00 0.00 35.51 2.69
150 151 4.505566 GGCAACTGGAGCAGGATATATTGA 60.506 45.833 0.00 0.00 35.51 2.57
151 152 3.755378 GGCAACTGGAGCAGGATATATTG 59.245 47.826 0.00 0.00 35.51 1.90
152 153 4.026356 GGCAACTGGAGCAGGATATATT 57.974 45.455 0.00 0.00 35.51 1.28
153 154 3.710209 GGCAACTGGAGCAGGATATAT 57.290 47.619 0.00 0.00 35.51 0.86
166 167 3.072166 ATGTTGGTCACAGAGGCAACTG 61.072 50.000 9.52 9.52 43.07 3.16
167 168 1.143684 ATGTTGGTCACAGAGGCAACT 59.856 47.619 0.00 0.00 45.16 3.16
168 169 1.537202 GATGTTGGTCACAGAGGCAAC 59.463 52.381 0.00 0.00 39.40 4.17
169 170 1.545428 GGATGTTGGTCACAGAGGCAA 60.545 52.381 0.00 0.00 39.40 4.52
170 171 0.036732 GGATGTTGGTCACAGAGGCA 59.963 55.000 0.00 0.00 39.40 4.75
171 172 0.036732 TGGATGTTGGTCACAGAGGC 59.963 55.000 0.00 0.00 39.40 4.70
172 173 1.349026 AGTGGATGTTGGTCACAGAGG 59.651 52.381 0.00 0.00 39.40 3.69
173 174 2.224378 ACAGTGGATGTTGGTCACAGAG 60.224 50.000 0.00 0.00 39.96 3.35
174 175 1.768275 ACAGTGGATGTTGGTCACAGA 59.232 47.619 0.00 0.00 39.96 3.41
175 176 2.260844 ACAGTGGATGTTGGTCACAG 57.739 50.000 0.00 0.00 39.96 3.66
184 185 0.106708 AGTGCGACAACAGTGGATGT 59.893 50.000 3.74 3.74 46.97 3.06
185 186 2.078849 TAGTGCGACAACAGTGGATG 57.921 50.000 0.00 0.00 0.00 3.51
186 187 3.002791 CAATAGTGCGACAACAGTGGAT 58.997 45.455 0.00 0.00 0.00 3.41
187 188 2.412870 CAATAGTGCGACAACAGTGGA 58.587 47.619 0.00 0.00 0.00 4.02
188 189 1.135972 GCAATAGTGCGACAACAGTGG 60.136 52.381 0.00 0.00 41.93 4.00
189 190 2.232239 GCAATAGTGCGACAACAGTG 57.768 50.000 0.00 0.00 41.93 3.66
207 208 3.833304 GCTAGGGATTGCACTGGC 58.167 61.111 0.00 0.00 45.01 4.85
208 209 0.531532 CGAGCTAGGGATTGCACTGG 60.532 60.000 0.00 0.00 0.00 4.00
209 210 0.531532 CCGAGCTAGGGATTGCACTG 60.532 60.000 4.68 0.00 0.00 3.66
210 211 1.826024 CCGAGCTAGGGATTGCACT 59.174 57.895 4.68 0.00 0.00 4.40
211 212 1.889573 GCCGAGCTAGGGATTGCAC 60.890 63.158 15.29 0.00 0.00 4.57
212 213 2.032860 GAGCCGAGCTAGGGATTGCA 62.033 60.000 15.29 0.00 39.88 4.08
213 214 1.301322 GAGCCGAGCTAGGGATTGC 60.301 63.158 15.29 0.00 39.88 3.56
214 215 1.006805 CGAGCCGAGCTAGGGATTG 60.007 63.158 15.29 4.71 39.88 2.67
215 216 2.862223 GCGAGCCGAGCTAGGGATT 61.862 63.158 15.29 0.00 39.88 3.01
216 217 3.299190 GCGAGCCGAGCTAGGGAT 61.299 66.667 15.29 4.16 39.88 3.85
217 218 4.507916 AGCGAGCCGAGCTAGGGA 62.508 66.667 15.29 0.00 44.05 4.20
218 219 3.972276 GAGCGAGCCGAGCTAGGG 61.972 72.222 15.29 6.97 46.13 3.53
219 220 3.972276 GGAGCGAGCCGAGCTAGG 61.972 72.222 8.78 8.78 46.13 3.02
220 221 2.470801 GATGGAGCGAGCCGAGCTAG 62.471 65.000 0.00 0.50 46.13 3.42
221 222 2.519541 ATGGAGCGAGCCGAGCTA 60.520 61.111 0.00 0.00 46.13 3.32
223 224 4.959596 GGATGGAGCGAGCCGAGC 62.960 72.222 0.00 0.00 0.00 5.03
224 225 4.292178 GGGATGGAGCGAGCCGAG 62.292 72.222 0.00 0.00 0.00 4.63
232 233 3.936772 TTGTTGGCGGGGATGGAGC 62.937 63.158 0.00 0.00 0.00 4.70
233 234 2.046285 GTTGTTGGCGGGGATGGAG 61.046 63.158 0.00 0.00 0.00 3.86
234 235 1.202099 TAGTTGTTGGCGGGGATGGA 61.202 55.000 0.00 0.00 0.00 3.41
235 236 1.029947 GTAGTTGTTGGCGGGGATGG 61.030 60.000 0.00 0.00 0.00 3.51
236 237 1.029947 GGTAGTTGTTGGCGGGGATG 61.030 60.000 0.00 0.00 0.00 3.51
237 238 1.301954 GGTAGTTGTTGGCGGGGAT 59.698 57.895 0.00 0.00 0.00 3.85
238 239 2.148052 TGGTAGTTGTTGGCGGGGA 61.148 57.895 0.00 0.00 0.00 4.81
239 240 1.969589 GTGGTAGTTGTTGGCGGGG 60.970 63.158 0.00 0.00 0.00 5.73
240 241 2.322081 CGTGGTAGTTGTTGGCGGG 61.322 63.158 0.00 0.00 0.00 6.13
241 242 2.322081 CCGTGGTAGTTGTTGGCGG 61.322 63.158 0.00 0.00 0.00 6.13
242 243 1.562575 GACCGTGGTAGTTGTTGGCG 61.563 60.000 0.00 0.00 0.00 5.69
243 244 0.533308 TGACCGTGGTAGTTGTTGGC 60.533 55.000 0.00 0.00 0.00 4.52
244 245 2.073816 GATGACCGTGGTAGTTGTTGG 58.926 52.381 0.00 0.00 0.00 3.77
245 246 1.724623 CGATGACCGTGGTAGTTGTTG 59.275 52.381 0.00 0.00 0.00 3.33
246 247 1.337447 CCGATGACCGTGGTAGTTGTT 60.337 52.381 0.00 0.00 36.31 2.83
247 248 0.245539 CCGATGACCGTGGTAGTTGT 59.754 55.000 0.00 0.00 36.31 3.32
248 249 1.082117 GCCGATGACCGTGGTAGTTG 61.082 60.000 0.00 0.00 36.31 3.16
249 250 1.217244 GCCGATGACCGTGGTAGTT 59.783 57.895 0.00 0.00 36.31 2.24
250 251 2.890371 GCCGATGACCGTGGTAGT 59.110 61.111 0.00 0.00 36.31 2.73
251 252 2.278596 CGCCGATGACCGTGGTAG 60.279 66.667 0.00 0.00 36.31 3.18
252 253 3.829044 CCGCCGATGACCGTGGTA 61.829 66.667 0.00 0.00 36.31 3.25
272 273 4.803426 GAGCGGGACCGTGAGCTG 62.803 72.222 12.83 0.00 40.39 4.24
273 274 2.912987 ATAGAGCGGGACCGTGAGCT 62.913 60.000 12.83 7.32 43.33 4.09
274 275 1.170919 TATAGAGCGGGACCGTGAGC 61.171 60.000 12.83 2.66 42.09 4.26
275 276 1.535833 ATATAGAGCGGGACCGTGAG 58.464 55.000 12.83 0.00 42.09 3.51
276 277 2.039480 ACTATATAGAGCGGGACCGTGA 59.961 50.000 16.79 0.00 42.09 4.35
277 278 2.419324 GACTATATAGAGCGGGACCGTG 59.581 54.545 16.79 0.00 42.09 4.94
278 279 2.709213 GACTATATAGAGCGGGACCGT 58.291 52.381 16.79 0.00 42.09 4.83
279 280 1.664659 CGACTATATAGAGCGGGACCG 59.335 57.143 16.79 6.35 43.09 4.79
280 281 1.401199 GCGACTATATAGAGCGGGACC 59.599 57.143 16.79 3.80 0.00 4.46
281 282 1.401199 GGCGACTATATAGAGCGGGAC 59.599 57.143 16.79 6.94 33.71 4.46
282 283 1.003928 TGGCGACTATATAGAGCGGGA 59.996 52.381 16.79 6.38 33.71 5.14
283 284 1.132643 GTGGCGACTATATAGAGCGGG 59.867 57.143 16.79 2.14 33.71 6.13
284 285 1.810755 TGTGGCGACTATATAGAGCGG 59.189 52.381 16.79 3.74 33.71 5.52
285 286 2.414293 GGTGTGGCGACTATATAGAGCG 60.414 54.545 16.79 17.93 33.71 5.03
286 287 2.820787 AGGTGTGGCGACTATATAGAGC 59.179 50.000 16.79 18.39 0.00 4.09
287 288 3.366476 GCAGGTGTGGCGACTATATAGAG 60.366 52.174 16.79 10.49 0.00 2.43
288 289 2.557056 GCAGGTGTGGCGACTATATAGA 59.443 50.000 16.79 0.00 0.00 1.98
289 290 2.352814 GGCAGGTGTGGCGACTATATAG 60.353 54.545 8.27 8.27 39.84 1.31
290 291 1.616865 GGCAGGTGTGGCGACTATATA 59.383 52.381 0.00 0.00 39.84 0.86
291 292 0.393077 GGCAGGTGTGGCGACTATAT 59.607 55.000 0.00 0.00 39.84 0.86
292 293 1.820581 GGCAGGTGTGGCGACTATA 59.179 57.895 0.00 0.00 39.84 1.31
293 294 2.584608 GGCAGGTGTGGCGACTAT 59.415 61.111 0.00 0.00 39.84 2.12
309 310 2.821366 GAGGAGCATGCGTGTGGG 60.821 66.667 13.01 0.00 0.00 4.61
310 311 3.190849 CGAGGAGCATGCGTGTGG 61.191 66.667 13.01 0.00 0.00 4.17
311 312 1.690283 CTTCGAGGAGCATGCGTGTG 61.690 60.000 13.01 2.80 0.00 3.82
312 313 1.446792 CTTCGAGGAGCATGCGTGT 60.447 57.895 13.01 0.00 0.00 4.49
313 314 2.806856 GCTTCGAGGAGCATGCGTG 61.807 63.158 13.01 0.09 42.25 5.34
314 315 2.510238 GCTTCGAGGAGCATGCGT 60.510 61.111 13.01 0.21 42.25 5.24
315 316 3.267860 GGCTTCGAGGAGCATGCG 61.268 66.667 13.01 0.00 44.49 4.73
316 317 3.267860 CGGCTTCGAGGAGCATGC 61.268 66.667 10.51 10.51 44.49 4.06
317 318 2.587194 CCGGCTTCGAGGAGCATG 60.587 66.667 11.06 3.06 44.49 4.06
318 319 3.854669 CCCGGCTTCGAGGAGCAT 61.855 66.667 11.06 0.00 44.49 3.79
322 323 4.064768 TACCCCCGGCTTCGAGGA 62.065 66.667 0.00 0.00 33.26 3.71
323 324 3.846430 GTACCCCCGGCTTCGAGG 61.846 72.222 0.00 0.00 35.61 4.63
324 325 2.758737 AGTACCCCCGGCTTCGAG 60.759 66.667 0.00 0.00 35.61 4.04
325 326 2.757099 GAGTACCCCCGGCTTCGA 60.757 66.667 0.00 0.00 35.61 3.71
326 327 3.846430 GGAGTACCCCCGGCTTCG 61.846 72.222 0.00 0.00 0.00 3.79
336 337 1.677637 CGAGCAAGGGAGGGAGTACC 61.678 65.000 0.00 0.00 40.67 3.34
337 338 0.971447 ACGAGCAAGGGAGGGAGTAC 60.971 60.000 0.00 0.00 0.00 2.73
338 339 0.970937 CACGAGCAAGGGAGGGAGTA 60.971 60.000 0.00 0.00 0.00 2.59
339 340 2.120718 ACGAGCAAGGGAGGGAGT 59.879 61.111 0.00 0.00 0.00 3.85
340 341 2.581354 CACGAGCAAGGGAGGGAG 59.419 66.667 0.00 0.00 0.00 4.30
341 342 3.003173 CCACGAGCAAGGGAGGGA 61.003 66.667 0.00 0.00 0.00 4.20
342 343 3.322466 ACCACGAGCAAGGGAGGG 61.322 66.667 0.00 0.00 0.00 4.30
369 370 3.278574 CAGAAGTGGTTGTTTCCAGTGA 58.721 45.455 0.00 0.00 40.56 3.41
370 371 3.016736 ACAGAAGTGGTTGTTTCCAGTG 58.983 45.455 0.00 0.00 40.56 3.66
371 372 3.366052 ACAGAAGTGGTTGTTTCCAGT 57.634 42.857 0.00 0.00 42.26 4.00
372 373 3.181487 CCAACAGAAGTGGTTGTTTCCAG 60.181 47.826 0.00 0.00 43.10 3.86
394 395 2.109126 GTTCCACGGGCTCATCTGC 61.109 63.158 0.00 0.00 0.00 4.26
396 397 2.990479 GGTTCCACGGGCTCATCT 59.010 61.111 0.00 0.00 0.00 2.90
397 398 2.511600 CGGTTCCACGGGCTCATC 60.512 66.667 0.00 0.00 0.00 2.92
398 399 4.778143 GCGGTTCCACGGGCTCAT 62.778 66.667 0.00 0.00 0.00 2.90
407 408 4.467084 GCATCTCGGGCGGTTCCA 62.467 66.667 0.00 0.00 36.21 3.53
408 409 3.682292 AAGCATCTCGGGCGGTTCC 62.682 63.158 0.00 0.00 36.08 3.62
409 410 2.125106 AAGCATCTCGGGCGGTTC 60.125 61.111 0.00 0.00 36.08 3.62
410 411 2.436646 CAAGCATCTCGGGCGGTT 60.437 61.111 0.00 0.00 36.08 4.44
414 415 2.514824 GGGACAAGCATCTCGGGC 60.515 66.667 0.00 0.00 0.00 6.13
418 419 1.519455 CGACGGGGACAAGCATCTC 60.519 63.158 0.00 0.00 0.00 2.75
419 420 2.579201 CGACGGGGACAAGCATCT 59.421 61.111 0.00 0.00 0.00 2.90
436 437 3.673809 CACAACTTGTACTTCTACTCGCC 59.326 47.826 0.00 0.00 0.00 5.54
446 447 1.423921 CCCCTTCCCACAACTTGTACT 59.576 52.381 0.00 0.00 0.00 2.73
450 451 0.251341 CCTCCCCTTCCCACAACTTG 60.251 60.000 0.00 0.00 0.00 3.16
453 454 0.251209 GAACCTCCCCTTCCCACAAC 60.251 60.000 0.00 0.00 0.00 3.32
461 462 1.068121 CTCAACTGGAACCTCCCCTT 58.932 55.000 0.00 0.00 35.03 3.95
464 465 1.552792 CTCTCTCAACTGGAACCTCCC 59.447 57.143 0.00 0.00 35.03 4.30
472 473 0.397941 TGGCAACCTCTCTCAACTGG 59.602 55.000 0.00 0.00 0.00 4.00
474 475 1.701847 ACATGGCAACCTCTCTCAACT 59.298 47.619 0.00 0.00 0.00 3.16
478 479 3.550437 ACATACATGGCAACCTCTCTC 57.450 47.619 0.00 0.00 0.00 3.20
479 480 3.370953 GGAACATACATGGCAACCTCTCT 60.371 47.826 0.00 0.00 0.00 3.10
489 490 2.947652 CCAGAGCAAGGAACATACATGG 59.052 50.000 0.00 0.00 0.00 3.66
501 502 0.886490 ACGAAAGGCACCAGAGCAAG 60.886 55.000 0.00 0.00 35.83 4.01
503 504 1.148273 AACGAAAGGCACCAGAGCA 59.852 52.632 0.00 0.00 35.83 4.26
504 505 1.576421 CAACGAAAGGCACCAGAGC 59.424 57.895 0.00 0.00 0.00 4.09
505 506 1.576421 GCAACGAAAGGCACCAGAG 59.424 57.895 0.00 0.00 0.00 3.35
506 507 1.896660 GGCAACGAAAGGCACCAGA 60.897 57.895 0.00 0.00 0.00 3.86
507 508 2.644992 GGCAACGAAAGGCACCAG 59.355 61.111 0.00 0.00 0.00 4.00
526 527 1.172180 AATATGATGCGGCCCAACGG 61.172 55.000 0.00 0.00 0.00 4.44
530 531 0.473755 ACAGAATATGATGCGGCCCA 59.526 50.000 0.00 0.00 0.00 5.36
536 537 6.390721 ACATCTACGGTACAGAATATGATGC 58.609 40.000 0.00 0.00 34.07 3.91
537 538 6.743172 CGACATCTACGGTACAGAATATGATG 59.257 42.308 0.00 8.04 36.05 3.07
538 539 6.653740 TCGACATCTACGGTACAGAATATGAT 59.346 38.462 0.00 0.00 0.00 2.45
539 540 5.993441 TCGACATCTACGGTACAGAATATGA 59.007 40.000 0.00 0.00 0.00 2.15
546 547 3.058846 CCATCTCGACATCTACGGTACAG 60.059 52.174 0.00 0.00 0.00 2.74
552 553 2.879026 TCTTCCCATCTCGACATCTACG 59.121 50.000 0.00 0.00 0.00 3.51
555 556 3.304911 TCTCTTCCCATCTCGACATCT 57.695 47.619 0.00 0.00 0.00 2.90
557 558 2.632028 CCATCTCTTCCCATCTCGACAT 59.368 50.000 0.00 0.00 0.00 3.06
558 559 2.034878 CCATCTCTTCCCATCTCGACA 58.965 52.381 0.00 0.00 0.00 4.35
560 561 1.043816 GCCATCTCTTCCCATCTCGA 58.956 55.000 0.00 0.00 0.00 4.04
609 610 2.599848 CGTTTCCAACTTTCAGCTCACG 60.600 50.000 0.00 0.00 0.00 4.35
616 617 3.314080 GTGGTCATCGTTTCCAACTTTCA 59.686 43.478 0.00 0.00 32.82 2.69
624 625 3.399330 TCTCAAAGTGGTCATCGTTTCC 58.601 45.455 0.00 0.00 0.00 3.13
637 638 1.073923 AGGCCAACCGAATCTCAAAGT 59.926 47.619 5.01 0.00 42.76 2.66
649 653 4.643387 AGCGACACCAGGCCAACC 62.643 66.667 5.01 0.00 0.00 3.77
657 661 3.680786 CCTCCGTGAGCGACACCA 61.681 66.667 10.48 0.00 45.73 4.17
666 670 2.683933 GAAGGCCCTCCTCCGTGA 60.684 66.667 0.00 0.00 43.40 4.35
667 671 3.787001 GGAAGGCCCTCCTCCGTG 61.787 72.222 13.67 0.00 43.40 4.94
686 690 0.820074 CCAGGTTGTACGTGGCCAAA 60.820 55.000 7.24 0.00 45.60 3.28
699 703 5.516044 GGGGAAATCTTATACAACCAGGTT 58.484 41.667 0.00 0.00 0.00 3.50
720 724 0.684153 CAACAGGTGGCAATAGGGGG 60.684 60.000 0.00 0.00 0.00 5.40
721 725 1.322538 GCAACAGGTGGCAATAGGGG 61.323 60.000 0.00 0.00 0.00 4.79
734 739 4.129380 TGATCATATTTCCGAGGCAACAG 58.871 43.478 0.00 0.00 41.41 3.16
743 748 9.423061 TGTGAGTATACAATGATCATATTTCCG 57.577 33.333 9.04 0.00 0.00 4.30
764 769 6.615264 AGCAGCAACATATTTAGATGTGAG 57.385 37.500 0.00 0.00 39.99 3.51
765 770 6.038603 GGAAGCAGCAACATATTTAGATGTGA 59.961 38.462 0.00 0.00 39.99 3.58
767 772 5.887598 TGGAAGCAGCAACATATTTAGATGT 59.112 36.000 0.00 0.00 41.92 3.06
769 774 7.408756 TTTGGAAGCAGCAACATATTTAGAT 57.591 32.000 0.00 0.00 0.00 1.98
798 803 5.146010 TCCAACAGCAACAGTTTCTTTTT 57.854 34.783 0.00 0.00 0.00 1.94
799 804 4.799564 TCCAACAGCAACAGTTTCTTTT 57.200 36.364 0.00 0.00 0.00 2.27
800 805 4.799564 TTCCAACAGCAACAGTTTCTTT 57.200 36.364 0.00 0.00 0.00 2.52
803 808 3.843999 TGTTTCCAACAGCAACAGTTTC 58.156 40.909 0.00 0.00 36.25 2.78
843 853 4.332819 GCAACATACTATTTCCTTCACGCT 59.667 41.667 0.00 0.00 0.00 5.07
872 890 3.186345 TCGGCCAATCGACTAGAGT 57.814 52.632 2.24 0.00 33.92 3.24
883 904 1.488705 ATTGGAGGTGAGTCGGCCAA 61.489 55.000 2.24 0.00 42.23 4.52
919 940 1.298014 GGCTCCTGCTACAGCTGTT 59.702 57.895 27.06 9.41 42.66 3.16
925 946 1.257750 ATGTGACGGCTCCTGCTACA 61.258 55.000 0.00 0.00 39.59 2.74
936 971 1.445410 TCGCGGAAAGATGTGACGG 60.445 57.895 6.13 0.00 0.00 4.79
942 977 0.721718 GGTTGAGTCGCGGAAAGATG 59.278 55.000 6.13 0.00 0.00 2.90
943 978 0.320374 TGGTTGAGTCGCGGAAAGAT 59.680 50.000 6.13 0.00 0.00 2.40
945 980 0.443869 CATGGTTGAGTCGCGGAAAG 59.556 55.000 6.13 0.00 0.00 2.62
946 981 0.034198 TCATGGTTGAGTCGCGGAAA 59.966 50.000 6.13 0.00 0.00 3.13
947 982 0.034198 TTCATGGTTGAGTCGCGGAA 59.966 50.000 6.13 0.00 32.27 4.30
950 985 2.476619 GGATATTCATGGTTGAGTCGCG 59.523 50.000 0.00 0.00 32.27 5.87
951 986 2.476619 CGGATATTCATGGTTGAGTCGC 59.523 50.000 0.00 0.00 32.27 5.19
953 988 2.808543 GCCGGATATTCATGGTTGAGTC 59.191 50.000 5.05 0.00 32.27 3.36
954 989 2.439507 AGCCGGATATTCATGGTTGAGT 59.560 45.455 5.05 0.00 32.27 3.41
955 990 3.131709 AGCCGGATATTCATGGTTGAG 57.868 47.619 5.05 0.00 32.27 3.02
956 991 3.476552 GAAGCCGGATATTCATGGTTGA 58.523 45.455 5.05 0.00 0.00 3.18
957 992 2.554032 GGAAGCCGGATATTCATGGTTG 59.446 50.000 5.05 0.00 0.00 3.77
958 993 2.489073 GGGAAGCCGGATATTCATGGTT 60.489 50.000 5.05 0.00 0.00 3.67
965 1000 0.763223 AGACGGGGAAGCCGGATATT 60.763 55.000 5.05 0.00 34.73 1.28
966 1001 1.152312 AGACGGGGAAGCCGGATAT 60.152 57.895 5.05 0.00 34.73 1.63
972 1007 4.821589 CGCTGAGACGGGGAAGCC 62.822 72.222 0.00 0.00 31.84 4.35
1144 1219 0.534203 TGACCAACTCCCTGCGTTTC 60.534 55.000 0.00 0.00 0.00 2.78
1392 1479 0.179145 GGTCCGACCATGTCAGTACG 60.179 60.000 13.05 0.00 38.42 3.67
1403 1490 1.373873 GAAACTGTCCGGTCCGACC 60.374 63.158 14.39 7.59 34.05 4.79
1404 1491 0.033090 AAGAAACTGTCCGGTCCGAC 59.967 55.000 14.39 9.76 0.00 4.79
1407 1494 2.474410 ATGAAGAAACTGTCCGGTCC 57.526 50.000 0.00 0.00 0.00 4.46
1426 1513 6.768861 TCCAAGAATCAACTAAAGGTCGAAAA 59.231 34.615 0.00 0.00 0.00 2.29
1434 1521 7.066766 AGCTAGCAATCCAAGAATCAACTAAAG 59.933 37.037 18.83 0.00 0.00 1.85
1449 1537 2.169832 TATTCCGCAGCTAGCAATCC 57.830 50.000 18.83 0.62 46.13 3.01
1452 1540 2.212652 CACATATTCCGCAGCTAGCAA 58.787 47.619 18.83 1.69 46.13 3.91
1453 1541 1.138859 ACACATATTCCGCAGCTAGCA 59.861 47.619 18.83 0.00 46.13 3.49
1480 1572 1.062587 GATCGATGCTTCAACCAACCG 59.937 52.381 0.54 0.00 0.00 4.44
1481 1573 2.096496 CAGATCGATGCTTCAACCAACC 59.904 50.000 0.54 0.00 0.00 3.77
1482 1574 2.744202 ACAGATCGATGCTTCAACCAAC 59.256 45.455 0.54 0.00 0.00 3.77
1483 1575 3.057969 ACAGATCGATGCTTCAACCAA 57.942 42.857 0.54 0.00 0.00 3.67
1490 1600 3.001634 CGTGCATTTACAGATCGATGCTT 59.998 43.478 0.54 0.00 43.89 3.91
1508 1618 3.552294 GTCCTAGCAGAAAATACTCGTGC 59.448 47.826 0.00 0.00 0.00 5.34
1512 1627 3.718815 CCGGTCCTAGCAGAAAATACTC 58.281 50.000 0.00 0.00 0.00 2.59
1517 1632 0.036388 CAGCCGGTCCTAGCAGAAAA 60.036 55.000 1.90 0.00 0.00 2.29
1552 1670 1.630244 CCGAGGCAAAACAGAGCGAG 61.630 60.000 0.00 0.00 0.00 5.03
1645 2157 2.057922 TGCTCCCTCCCTCCATAATTC 58.942 52.381 0.00 0.00 0.00 2.17
1696 2221 6.037830 GGAGTTGGCACATTGTATACGTTAAT 59.962 38.462 0.00 0.00 39.30 1.40
1785 2310 6.517605 ACTGAACACTACCTTCTCTTTTCTC 58.482 40.000 0.00 0.00 0.00 2.87
1845 2380 1.135199 CAAGATCAAGCATGGTGGTGC 60.135 52.381 0.00 0.00 45.38 5.01
1846 2381 2.439409 TCAAGATCAAGCATGGTGGTG 58.561 47.619 0.00 0.00 0.00 4.17
1847 2382 2.885135 TCAAGATCAAGCATGGTGGT 57.115 45.000 0.00 0.00 0.00 4.16
1848 2383 2.159282 GCTTCAAGATCAAGCATGGTGG 60.159 50.000 10.52 0.00 44.87 4.61
1849 2384 3.146618 GCTTCAAGATCAAGCATGGTG 57.853 47.619 10.52 0.00 44.87 4.17
1861 2396 3.361281 AATGCCTCTCATGCTTCAAGA 57.639 42.857 0.00 0.00 35.13 3.02
1894 2429 1.985334 TAATGTAGTGTGCGTGACCG 58.015 50.000 0.00 0.00 37.07 4.79
1984 2552 0.676466 TTAGCCGCCTTCACCATGTG 60.676 55.000 0.00 0.00 34.45 3.21
1985 2553 0.037590 TTTAGCCGCCTTCACCATGT 59.962 50.000 0.00 0.00 0.00 3.21
2013 2582 4.293415 GGACAGTCAACAAGAGCAAAATG 58.707 43.478 2.17 0.00 0.00 2.32
2047 2616 3.768878 GCTGAATAGTAGGAGCCTAGGA 58.231 50.000 14.75 0.00 0.00 2.94
2114 2684 0.038618 TCCGTCACGTCATCTTGGTG 60.039 55.000 0.00 0.00 0.00 4.17
2124 2694 2.299297 AGAAGAAGGAAATCCGTCACGT 59.701 45.455 16.09 2.84 45.25 4.49
2131 2701 2.420372 GCGGTTGAGAAGAAGGAAATCC 59.580 50.000 0.00 0.00 0.00 3.01
2132 2702 3.339141 AGCGGTTGAGAAGAAGGAAATC 58.661 45.455 0.00 0.00 0.00 2.17
2133 2703 3.339141 GAGCGGTTGAGAAGAAGGAAAT 58.661 45.455 0.00 0.00 0.00 2.17
2136 2706 0.243907 CGAGCGGTTGAGAAGAAGGA 59.756 55.000 0.00 0.00 0.00 3.36
2185 2807 9.899226 GCTGTAGAGAACAATTTTATTTCTGTT 57.101 29.630 0.00 0.00 37.74 3.16
2231 2875 4.446371 AGAAATTACTCTGGCCGATTGAG 58.554 43.478 0.00 5.79 0.00 3.02
2254 2898 4.525996 ACAAGCATCTGCCATGTAATGTA 58.474 39.130 8.86 0.00 44.81 2.29
2255 2899 3.359033 ACAAGCATCTGCCATGTAATGT 58.641 40.909 8.86 0.00 44.81 2.71
2309 2979 3.931468 AGATCAAGCAGCGTGATATATGC 59.069 43.478 22.01 10.59 41.79 3.14
2417 3129 5.696724 GCCGCATCTTACTTGTATACTGATT 59.303 40.000 4.17 0.00 0.00 2.57
2472 3184 1.063806 GCATTGCGTATAGGCGAGAG 58.936 55.000 12.61 8.90 35.06 3.20
2508 3220 1.135575 GCTTTGGAGATTGCCAACGAG 60.136 52.381 0.00 0.00 46.99 4.18
2617 3329 4.813296 ACCAAAGCGAAGAAAACTGTAG 57.187 40.909 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.