Multiple sequence alignment - TraesCS2D01G514100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G514100 chr2D 100.000 3227 0 0 1 3227 606128606 606131832 0.000000e+00 5960.0
1 TraesCS2D01G514100 chr2A 88.832 2722 201 31 98 2768 737641184 737643853 0.000000e+00 3247.0
2 TraesCS2D01G514100 chr2A 90.657 1477 89 17 609 2050 737806670 737808132 0.000000e+00 1917.0
3 TraesCS2D01G514100 chr2A 86.407 846 87 18 2055 2875 737825917 737826759 0.000000e+00 900.0
4 TraesCS2D01G514100 chr2B 90.157 2418 174 31 409 2776 737047091 737049494 0.000000e+00 3088.0
5 TraesCS2D01G514100 chr2B 92.405 237 16 1 103 337 737009352 737009588 1.430000e-88 337.0
6 TraesCS2D01G514100 chr2B 87.956 274 22 2 608 881 737014826 737015088 2.420000e-81 313.0
7 TraesCS2D01G514100 chr2B 93.333 195 12 1 418 611 737010941 737011135 1.470000e-73 287.0
8 TraesCS2D01G514100 chr2B 90.769 65 6 0 2799 2863 737049495 737049559 1.590000e-13 87.9
9 TraesCS2D01G514100 chrUn 93.349 421 25 1 1031 1451 477045265 477045682 1.270000e-173 619.0
10 TraesCS2D01G514100 chrUn 82.919 322 40 11 2905 3225 35220853 35220546 3.170000e-70 276.0
11 TraesCS2D01G514100 chr3A 85.315 286 34 7 2905 3186 555388313 555388032 4.070000e-74 289.0
12 TraesCS2D01G514100 chr3A 82.569 327 43 9 2911 3227 710836334 710836012 3.170000e-70 276.0
13 TraesCS2D01G514100 chr3D 83.228 316 43 4 2911 3225 5754456 5754762 6.820000e-72 281.0
14 TraesCS2D01G514100 chr3D 82.569 327 41 8 2911 3227 548716196 548716516 1.140000e-69 274.0
15 TraesCS2D01G514100 chr3B 85.821 268 32 4 2919 3183 765547265 765547001 2.450000e-71 279.0
16 TraesCS2D01G514100 chr3B 81.009 337 48 12 2905 3227 504082046 504082380 1.490000e-63 254.0
17 TraesCS2D01G514100 chr5A 84.452 283 37 5 2905 3186 656051581 656051305 4.100000e-69 272.0
18 TraesCS2D01G514100 chr4B 84.452 283 31 7 2905 3186 296156312 296156582 1.910000e-67 267.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G514100 chr2D 606128606 606131832 3226 False 5960.000000 5960 100.000000 1 3227 1 chr2D.!!$F1 3226
1 TraesCS2D01G514100 chr2A 737641184 737643853 2669 False 3247.000000 3247 88.832000 98 2768 1 chr2A.!!$F1 2670
2 TraesCS2D01G514100 chr2A 737806670 737808132 1462 False 1917.000000 1917 90.657000 609 2050 1 chr2A.!!$F2 1441
3 TraesCS2D01G514100 chr2A 737825917 737826759 842 False 900.000000 900 86.407000 2055 2875 1 chr2A.!!$F3 820
4 TraesCS2D01G514100 chr2B 737047091 737049559 2468 False 1587.950000 3088 90.463000 409 2863 2 chr2B.!!$F2 2454
5 TraesCS2D01G514100 chr2B 737009352 737015088 5736 False 312.333333 337 91.231333 103 881 3 chr2B.!!$F1 778

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
99 100 0.107654 GTCTAGCTCCGCCATTGGTT 60.108 55.0 4.26 0.0 0.0 3.67 F
100 101 0.618458 TCTAGCTCCGCCATTGGTTT 59.382 50.0 4.26 0.0 0.0 3.27 F
818 5829 0.804989 CCACTGCAAATCTCGAACCC 59.195 55.0 0.00 0.0 0.0 4.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2052 7114 0.107116 GGCCCTGAGAGTCTAGTCGA 60.107 60.0 0.0 0.0 0.0 4.20 R
2053 7115 0.394488 TGGCCCTGAGAGTCTAGTCG 60.394 60.0 0.0 0.0 0.0 4.18 R
2811 7915 0.804989 GTCAAGGCGGATGAGTTTGG 59.195 55.0 0.0 0.0 0.0 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.630289 TAGCTTTCGCCCTCCTCC 58.370 61.111 0.00 0.00 36.60 4.30
18 19 2.064581 TAGCTTTCGCCCTCCTCCC 61.065 63.158 0.00 0.00 36.60 4.30
19 20 4.491409 GCTTTCGCCCTCCTCCCC 62.491 72.222 0.00 0.00 0.00 4.81
20 21 3.798511 CTTTCGCCCTCCTCCCCC 61.799 72.222 0.00 0.00 0.00 5.40
41 42 2.283809 CCCCCACACCCCACAAAA 59.716 61.111 0.00 0.00 0.00 2.44
42 43 1.383248 CCCCCACACCCCACAAAAA 60.383 57.895 0.00 0.00 0.00 1.94
64 65 4.736126 AAACCATATTTGCTACCTTGGC 57.264 40.909 0.00 0.00 0.00 4.52
65 66 2.666317 ACCATATTTGCTACCTTGGCC 58.334 47.619 0.00 0.00 0.00 5.36
66 67 1.963515 CCATATTTGCTACCTTGGCCC 59.036 52.381 0.00 0.00 0.00 5.80
67 68 1.963515 CATATTTGCTACCTTGGCCCC 59.036 52.381 0.00 0.00 0.00 5.80
68 69 0.260523 TATTTGCTACCTTGGCCCCC 59.739 55.000 0.00 0.00 0.00 5.40
69 70 1.518431 ATTTGCTACCTTGGCCCCCT 61.518 55.000 0.00 0.00 0.00 4.79
70 71 1.735455 TTTGCTACCTTGGCCCCCTT 61.735 55.000 0.00 0.00 0.00 3.95
71 72 2.043953 GCTACCTTGGCCCCCTTG 60.044 66.667 0.00 0.00 0.00 3.61
72 73 2.612493 GCTACCTTGGCCCCCTTGA 61.612 63.158 0.00 0.00 0.00 3.02
73 74 2.083715 CTACCTTGGCCCCCTTGAA 58.916 57.895 0.00 0.00 0.00 2.69
74 75 0.323451 CTACCTTGGCCCCCTTGAAC 60.323 60.000 0.00 0.00 0.00 3.18
75 76 1.068943 TACCTTGGCCCCCTTGAACA 61.069 55.000 0.00 0.00 0.00 3.18
76 77 1.079073 CCTTGGCCCCCTTGAACAT 59.921 57.895 0.00 0.00 0.00 2.71
77 78 0.972471 CCTTGGCCCCCTTGAACATC 60.972 60.000 0.00 0.00 0.00 3.06
78 79 0.972471 CTTGGCCCCCTTGAACATCC 60.972 60.000 0.00 0.00 0.00 3.51
79 80 1.442886 TTGGCCCCCTTGAACATCCT 61.443 55.000 0.00 0.00 0.00 3.24
80 81 1.380380 GGCCCCCTTGAACATCCTG 60.380 63.158 0.00 0.00 0.00 3.86
81 82 1.384191 GCCCCCTTGAACATCCTGT 59.616 57.895 0.00 0.00 0.00 4.00
82 83 0.681243 GCCCCCTTGAACATCCTGTC 60.681 60.000 0.00 0.00 0.00 3.51
83 84 0.995024 CCCCCTTGAACATCCTGTCT 59.005 55.000 0.00 0.00 0.00 3.41
84 85 2.196595 CCCCCTTGAACATCCTGTCTA 58.803 52.381 0.00 0.00 0.00 2.59
85 86 2.171448 CCCCCTTGAACATCCTGTCTAG 59.829 54.545 0.00 0.00 0.00 2.43
86 87 2.420687 CCCCTTGAACATCCTGTCTAGC 60.421 54.545 0.00 0.00 0.00 3.42
87 88 2.503356 CCCTTGAACATCCTGTCTAGCT 59.497 50.000 0.00 0.00 0.00 3.32
88 89 3.431486 CCCTTGAACATCCTGTCTAGCTC 60.431 52.174 0.00 0.00 0.00 4.09
89 90 3.431486 CCTTGAACATCCTGTCTAGCTCC 60.431 52.174 0.00 0.00 0.00 4.70
90 91 1.751351 TGAACATCCTGTCTAGCTCCG 59.249 52.381 0.00 0.00 0.00 4.63
91 92 0.461961 AACATCCTGTCTAGCTCCGC 59.538 55.000 0.00 0.00 0.00 5.54
92 93 1.365633 CATCCTGTCTAGCTCCGCC 59.634 63.158 0.00 0.00 0.00 6.13
93 94 1.075970 ATCCTGTCTAGCTCCGCCA 60.076 57.895 0.00 0.00 0.00 5.69
94 95 0.470833 ATCCTGTCTAGCTCCGCCAT 60.471 55.000 0.00 0.00 0.00 4.40
95 96 0.687757 TCCTGTCTAGCTCCGCCATT 60.688 55.000 0.00 0.00 0.00 3.16
96 97 0.531532 CCTGTCTAGCTCCGCCATTG 60.532 60.000 0.00 0.00 0.00 2.82
97 98 0.531532 CTGTCTAGCTCCGCCATTGG 60.532 60.000 0.00 0.00 0.00 3.16
98 99 1.264749 TGTCTAGCTCCGCCATTGGT 61.265 55.000 4.26 0.00 0.00 3.67
99 100 0.107654 GTCTAGCTCCGCCATTGGTT 60.108 55.000 4.26 0.00 0.00 3.67
100 101 0.618458 TCTAGCTCCGCCATTGGTTT 59.382 50.000 4.26 0.00 0.00 3.27
101 102 1.017387 CTAGCTCCGCCATTGGTTTC 58.983 55.000 4.26 0.00 0.00 2.78
104 105 1.982073 GCTCCGCCATTGGTTTCTCG 61.982 60.000 4.26 0.00 0.00 4.04
114 115 4.799949 CCATTGGTTTCTCGCATACAAATG 59.200 41.667 0.00 0.00 34.45 2.32
149 150 7.445402 AGTGCATATATACACAAATCCAAGGAC 59.555 37.037 16.65 0.00 39.30 3.85
150 151 6.426633 TGCATATATACACAAATCCAAGGACG 59.573 38.462 0.00 0.00 0.00 4.79
380 415 1.002430 CTTACTTGTCAGGCTCTGGCA 59.998 52.381 5.51 5.51 44.77 4.92
396 431 4.736165 CAGCACTTGCCAAACCAC 57.264 55.556 0.00 0.00 43.38 4.16
397 432 1.299316 CAGCACTTGCCAAACCACG 60.299 57.895 0.00 0.00 43.38 4.94
398 433 2.027460 GCACTTGCCAAACCACGG 59.973 61.111 0.00 0.00 34.31 4.94
455 1742 4.695200 CGATTACGATACGAACTCGATGA 58.305 43.478 6.05 0.00 41.15 2.92
457 1744 2.386501 ACGATACGAACTCGATGAGC 57.613 50.000 6.05 0.00 43.02 4.26
490 1791 3.325201 ATCTTTCCCCACCGTCGCC 62.325 63.158 0.00 0.00 0.00 5.54
757 5767 1.409790 TCTTCGACCCAGAAACAACGA 59.590 47.619 0.00 0.00 0.00 3.85
762 5772 1.329599 GACCCAGAAACAACGACACAC 59.670 52.381 0.00 0.00 0.00 3.82
818 5829 0.804989 CCACTGCAAATCTCGAACCC 59.195 55.000 0.00 0.00 0.00 4.11
847 5858 2.387851 ATCGGGATCCTGGTCCGGAT 62.388 60.000 20.82 21.52 46.87 4.18
1071 6110 3.322254 GGTTCCTCTCTTGTGTTCTGAGA 59.678 47.826 0.00 0.00 35.78 3.27
1191 6230 0.898320 TAGGAGCAACAGGAGACAGC 59.102 55.000 0.00 0.00 0.00 4.40
1209 6248 4.137543 ACAGCGAAGAAAATGGAAGAAGT 58.862 39.130 0.00 0.00 0.00 3.01
1210 6249 4.580580 ACAGCGAAGAAAATGGAAGAAGTT 59.419 37.500 0.00 0.00 0.00 2.66
1219 6258 8.329203 AGAAAATGGAAGAAGTTCTGATGTAC 57.671 34.615 6.06 0.00 32.72 2.90
1220 6259 8.160106 AGAAAATGGAAGAAGTTCTGATGTACT 58.840 33.333 6.06 0.00 32.72 2.73
1221 6260 9.436957 GAAAATGGAAGAAGTTCTGATGTACTA 57.563 33.333 6.06 0.00 32.72 1.82
1342 6381 5.602978 ACTAAAGTTGGACTCCTGAGAAGAA 59.397 40.000 0.22 0.00 0.00 2.52
1350 6389 3.827302 GACTCCTGAGAAGAACTACACCA 59.173 47.826 0.22 0.00 0.00 4.17
1358 6397 4.810790 AGAAGAACTACACCAGAATGTCG 58.189 43.478 0.00 0.00 33.85 4.35
1372 6411 5.392380 CCAGAATGTCGGAAATCTGAAAAGG 60.392 44.000 14.16 0.00 41.38 3.11
1376 6415 3.818773 TGTCGGAAATCTGAAAAGGAACC 59.181 43.478 0.00 0.00 32.23 3.62
1885 6943 3.067684 AGTGGTAAAGCCCATGTACAC 57.932 47.619 0.00 0.00 36.74 2.90
1899 6957 5.390461 CCCATGTACACTGTTGTATTTGTCG 60.390 44.000 0.00 0.00 40.40 4.35
1918 6979 6.349973 TGTCGAAATAACATCATCTCTTGC 57.650 37.500 0.00 0.00 0.00 4.01
1936 6997 2.436417 TGCAGAAGTTCTAATGGCCAC 58.564 47.619 8.16 0.00 0.00 5.01
2012 7074 4.202050 GCAGAGGAAACAAAGAAAGAAGCA 60.202 41.667 0.00 0.00 0.00 3.91
2026 7088 3.979101 AGAAGCAGAGGAAGGAAGAAG 57.021 47.619 0.00 0.00 0.00 2.85
2038 7100 1.039856 GGAAGAAGGCAAAACAGGCA 58.960 50.000 0.00 0.00 36.37 4.75
2075 7137 1.007721 ACTAGACTCTCAGGGCCATGT 59.992 52.381 18.43 0.00 0.00 3.21
2124 7186 6.252228 CCGAAGAAATTAAGAAGATTGCAAGC 59.748 38.462 6.58 6.58 0.00 4.01
2126 7188 6.500684 AGAAATTAAGAAGATTGCAAGCGA 57.499 33.333 9.38 0.00 0.00 4.93
2265 7327 2.939756 TGTTGTAGCTTCTTTTGTCGCA 59.060 40.909 0.00 0.00 0.00 5.10
2296 7358 2.654863 CCCTTTCGATTAGGGCAACAT 58.345 47.619 17.45 0.00 45.59 2.71
2311 7373 0.828022 AACATTAGCCATCGGTCGGA 59.172 50.000 0.00 0.00 0.00 4.55
2351 7413 1.413227 GCCTCCTCCCTAGCCTTTAGA 60.413 57.143 0.00 0.00 0.00 2.10
2358 7420 7.458170 CCTCCTCCCTAGCCTTTAGATTAAATA 59.542 40.741 0.00 0.00 0.00 1.40
2376 7438 5.551760 AAATAGCAAAGTCTGGATCGTTG 57.448 39.130 0.00 0.00 0.00 4.10
2400 7462 3.577848 ACCATTGCAGCATAAAACTTCCA 59.422 39.130 0.00 0.00 0.00 3.53
2401 7463 4.040217 ACCATTGCAGCATAAAACTTCCAA 59.960 37.500 0.00 0.00 0.00 3.53
2421 7483 5.651576 TCCAAGCTATACATTTGCAACATCA 59.348 36.000 0.00 0.00 0.00 3.07
2425 7487 8.347771 CAAGCTATACATTTGCAACATCATAGT 58.652 33.333 0.00 0.00 0.00 2.12
2433 7495 9.448438 ACATTTGCAACATCATAGTAGAACTTA 57.552 29.630 0.00 0.00 0.00 2.24
2495 7566 1.887854 TCATGTCAAGCACAACCATGG 59.112 47.619 11.19 11.19 38.97 3.66
2503 7574 1.098050 GCACAACCATGGATGACCTC 58.902 55.000 27.18 9.71 37.04 3.85
2517 7606 5.224821 GATGACCTCATCCTCATTGATCA 57.775 43.478 4.17 0.00 45.24 2.92
2523 7612 4.444449 CCTCATCCTCATTGATCAGAGCAA 60.444 45.833 2.99 2.99 0.00 3.91
2533 7622 2.026356 TGATCAGAGCAAAATCCCCGAA 60.026 45.455 0.00 0.00 0.00 4.30
2550 7639 4.158394 CCCCGAAAAGAATCATCACAACAT 59.842 41.667 0.00 0.00 0.00 2.71
2551 7640 5.356751 CCCCGAAAAGAATCATCACAACATA 59.643 40.000 0.00 0.00 0.00 2.29
2552 7641 6.258160 CCCGAAAAGAATCATCACAACATAC 58.742 40.000 0.00 0.00 0.00 2.39
2553 7642 6.094048 CCCGAAAAGAATCATCACAACATACT 59.906 38.462 0.00 0.00 0.00 2.12
2554 7643 7.182761 CCGAAAAGAATCATCACAACATACTC 58.817 38.462 0.00 0.00 0.00 2.59
2594 7696 3.000872 CACGTTTTCAGCAACACAACATG 60.001 43.478 0.00 0.00 0.00 3.21
2595 7697 3.119673 ACGTTTTCAGCAACACAACATGA 60.120 39.130 0.00 0.00 0.00 3.07
2596 7698 3.856521 CGTTTTCAGCAACACAACATGAA 59.143 39.130 0.00 0.00 0.00 2.57
2597 7699 4.259371 CGTTTTCAGCAACACAACATGAAC 60.259 41.667 0.00 0.00 30.07 3.18
2598 7700 4.446994 TTTCAGCAACACAACATGAACA 57.553 36.364 0.00 0.00 30.07 3.18
2599 7701 4.652421 TTCAGCAACACAACATGAACAT 57.348 36.364 0.00 0.00 0.00 2.71
2600 7702 5.764487 TTCAGCAACACAACATGAACATA 57.236 34.783 0.00 0.00 0.00 2.29
2601 7703 5.107109 TCAGCAACACAACATGAACATAC 57.893 39.130 0.00 0.00 0.00 2.39
2602 7704 4.578105 TCAGCAACACAACATGAACATACA 59.422 37.500 0.00 0.00 0.00 2.29
2603 7705 5.067023 TCAGCAACACAACATGAACATACAA 59.933 36.000 0.00 0.00 0.00 2.41
2604 7706 5.173673 CAGCAACACAACATGAACATACAAC 59.826 40.000 0.00 0.00 0.00 3.32
2605 7707 5.039984 GCAACACAACATGAACATACAACA 58.960 37.500 0.00 0.00 0.00 3.33
2606 7708 5.691305 GCAACACAACATGAACATACAACAT 59.309 36.000 0.00 0.00 0.00 2.71
2609 7711 9.242477 CAACACAACATGAACATACAACATTTA 57.758 29.630 0.00 0.00 0.00 1.40
2614 7716 9.236691 CAACATGAACATACAACATTTATAGCC 57.763 33.333 0.00 0.00 0.00 3.93
2685 7787 0.995024 AACAAGGCCCTAGCATGTCT 59.005 50.000 0.00 0.00 39.01 3.41
2691 7793 2.576191 AGGCCCTAGCATGTCTAACAAA 59.424 45.455 0.00 0.00 42.56 2.83
2741 7844 2.582052 ACCTTTGTCCTCGAATGCAAA 58.418 42.857 0.00 7.42 0.00 3.68
2750 7853 3.118629 TCCTCGAATGCAAACTCATAGCT 60.119 43.478 0.00 0.00 0.00 3.32
2761 7864 5.507077 CAAACTCATAGCTAGAGACTCGTC 58.493 45.833 20.33 0.00 36.91 4.20
2780 7883 1.446099 GCGACGAATCTGGCTCACA 60.446 57.895 0.00 0.00 0.00 3.58
2797 7900 0.811915 ACAAGAGCACTATCGTCGCT 59.188 50.000 0.00 0.00 39.12 4.93
2811 7915 0.528684 GTCGCTAGATCTGGTGTGCC 60.529 60.000 17.90 5.50 0.00 5.01
2822 7926 0.539438 TGGTGTGCCCAAACTCATCC 60.539 55.000 0.00 0.00 41.50 3.51
2826 7930 2.044946 GCCCAAACTCATCCGCCT 60.045 61.111 0.00 0.00 0.00 5.52
2863 7967 0.957395 CGAGCTTGGTGGCATGAAGT 60.957 55.000 0.00 0.00 34.17 3.01
2866 7970 3.741075 CGAGCTTGGTGGCATGAAGTATA 60.741 47.826 0.00 0.00 34.17 1.47
2875 7979 2.616842 GGCATGAAGTATACCCCGTTTG 59.383 50.000 0.00 0.00 0.00 2.93
2876 7980 3.537580 GCATGAAGTATACCCCGTTTGA 58.462 45.455 0.00 0.00 0.00 2.69
2877 7981 3.560068 GCATGAAGTATACCCCGTTTGAG 59.440 47.826 0.00 0.00 0.00 3.02
2878 7982 4.766375 CATGAAGTATACCCCGTTTGAGT 58.234 43.478 0.00 0.00 0.00 3.41
2879 7983 4.895668 TGAAGTATACCCCGTTTGAGTT 57.104 40.909 0.00 0.00 0.00 3.01
2880 7984 4.571919 TGAAGTATACCCCGTTTGAGTTG 58.428 43.478 0.00 0.00 0.00 3.16
2881 7985 4.283978 TGAAGTATACCCCGTTTGAGTTGA 59.716 41.667 0.00 0.00 0.00 3.18
2882 7986 4.895668 AGTATACCCCGTTTGAGTTGAA 57.104 40.909 0.00 0.00 0.00 2.69
2883 7987 5.431179 AGTATACCCCGTTTGAGTTGAAT 57.569 39.130 0.00 0.00 0.00 2.57
2884 7988 6.549433 AGTATACCCCGTTTGAGTTGAATA 57.451 37.500 0.00 0.00 0.00 1.75
2885 7989 6.579865 AGTATACCCCGTTTGAGTTGAATAG 58.420 40.000 0.00 0.00 0.00 1.73
2886 7990 3.067684 ACCCCGTTTGAGTTGAATAGG 57.932 47.619 0.00 0.00 0.00 2.57
2887 7991 2.290705 ACCCCGTTTGAGTTGAATAGGG 60.291 50.000 0.00 0.00 38.04 3.53
2888 7992 2.026636 CCCCGTTTGAGTTGAATAGGGA 60.027 50.000 0.00 0.00 39.95 4.20
2889 7993 3.560453 CCCCGTTTGAGTTGAATAGGGAA 60.560 47.826 0.00 0.00 39.95 3.97
2890 7994 4.270008 CCCGTTTGAGTTGAATAGGGAAT 58.730 43.478 0.00 0.00 39.95 3.01
2891 7995 4.705023 CCCGTTTGAGTTGAATAGGGAATT 59.295 41.667 0.00 0.00 39.95 2.17
2892 7996 5.185056 CCCGTTTGAGTTGAATAGGGAATTT 59.815 40.000 0.00 0.00 39.95 1.82
2893 7997 6.295067 CCCGTTTGAGTTGAATAGGGAATTTT 60.295 38.462 0.00 0.00 39.95 1.82
2894 7998 6.586082 CCGTTTGAGTTGAATAGGGAATTTTG 59.414 38.462 0.00 0.00 0.00 2.44
2895 7999 6.586082 CGTTTGAGTTGAATAGGGAATTTTGG 59.414 38.462 0.00 0.00 0.00 3.28
2896 8000 7.523052 CGTTTGAGTTGAATAGGGAATTTTGGA 60.523 37.037 0.00 0.00 0.00 3.53
2897 8001 8.314021 GTTTGAGTTGAATAGGGAATTTTGGAT 58.686 33.333 0.00 0.00 0.00 3.41
2898 8002 7.645058 TGAGTTGAATAGGGAATTTTGGATC 57.355 36.000 0.00 0.00 0.00 3.36
2899 8003 7.413446 TGAGTTGAATAGGGAATTTTGGATCT 58.587 34.615 0.00 0.00 0.00 2.75
2900 8004 7.557719 TGAGTTGAATAGGGAATTTTGGATCTC 59.442 37.037 0.00 0.00 0.00 2.75
2901 8005 7.413446 AGTTGAATAGGGAATTTTGGATCTCA 58.587 34.615 0.00 0.00 0.00 3.27
2902 8006 7.559170 AGTTGAATAGGGAATTTTGGATCTCAG 59.441 37.037 0.00 0.00 0.00 3.35
2903 8007 5.829924 TGAATAGGGAATTTTGGATCTCAGC 59.170 40.000 0.00 0.00 0.00 4.26
2904 8008 3.744940 AGGGAATTTTGGATCTCAGCA 57.255 42.857 0.00 0.00 0.00 4.41
2905 8009 4.051661 AGGGAATTTTGGATCTCAGCAA 57.948 40.909 0.00 0.00 0.00 3.91
2906 8010 4.419282 AGGGAATTTTGGATCTCAGCAAA 58.581 39.130 0.00 0.00 0.00 3.68
2907 8011 5.028131 AGGGAATTTTGGATCTCAGCAAAT 58.972 37.500 0.00 0.00 0.00 2.32
2908 8012 5.486419 AGGGAATTTTGGATCTCAGCAAATT 59.514 36.000 0.00 0.42 31.89 1.82
2909 8013 5.814188 GGGAATTTTGGATCTCAGCAAATTC 59.186 40.000 16.28 16.28 39.49 2.17
2910 8014 6.400568 GGAATTTTGGATCTCAGCAAATTCA 58.599 36.000 20.83 3.71 40.67 2.57
2911 8015 6.875195 GGAATTTTGGATCTCAGCAAATTCAA 59.125 34.615 20.83 4.22 40.67 2.69
2912 8016 7.388500 GGAATTTTGGATCTCAGCAAATTCAAA 59.612 33.333 20.83 8.34 40.67 2.69
2913 8017 8.680039 AATTTTGGATCTCAGCAAATTCAAAA 57.320 26.923 4.51 4.51 41.94 2.44
2914 8018 8.857694 ATTTTGGATCTCAGCAAATTCAAAAT 57.142 26.923 8.01 8.01 41.93 1.82
2915 8019 8.680039 TTTTGGATCTCAGCAAATTCAAAATT 57.320 26.923 0.00 0.00 36.10 1.82
2916 8020 7.894376 TTGGATCTCAGCAAATTCAAAATTC 57.106 32.000 0.00 0.00 0.00 2.17
2917 8021 6.995364 TGGATCTCAGCAAATTCAAAATTCA 58.005 32.000 0.00 0.00 0.00 2.57
2918 8022 7.443477 TGGATCTCAGCAAATTCAAAATTCAA 58.557 30.769 0.00 0.00 0.00 2.69
2919 8023 7.932491 TGGATCTCAGCAAATTCAAAATTCAAA 59.068 29.630 0.00 0.00 0.00 2.69
2920 8024 8.776470 GGATCTCAGCAAATTCAAAATTCAAAA 58.224 29.630 0.00 0.00 0.00 2.44
2982 8086 5.964958 AAAAAGGATGTGAGGTGTATGTG 57.035 39.130 0.00 0.00 0.00 3.21
2983 8087 4.640771 AAAGGATGTGAGGTGTATGTGT 57.359 40.909 0.00 0.00 0.00 3.72
2984 8088 3.616956 AGGATGTGAGGTGTATGTGTG 57.383 47.619 0.00 0.00 0.00 3.82
2985 8089 2.906389 AGGATGTGAGGTGTATGTGTGT 59.094 45.455 0.00 0.00 0.00 3.72
2986 8090 4.093743 AGGATGTGAGGTGTATGTGTGTA 58.906 43.478 0.00 0.00 0.00 2.90
2987 8091 4.530553 AGGATGTGAGGTGTATGTGTGTAA 59.469 41.667 0.00 0.00 0.00 2.41
2988 8092 5.012664 AGGATGTGAGGTGTATGTGTGTAAA 59.987 40.000 0.00 0.00 0.00 2.01
2989 8093 5.703592 GGATGTGAGGTGTATGTGTGTAAAA 59.296 40.000 0.00 0.00 0.00 1.52
2990 8094 6.374333 GGATGTGAGGTGTATGTGTGTAAAAT 59.626 38.462 0.00 0.00 0.00 1.82
2991 8095 7.094377 GGATGTGAGGTGTATGTGTGTAAAATT 60.094 37.037 0.00 0.00 0.00 1.82
2992 8096 7.575414 TGTGAGGTGTATGTGTGTAAAATTT 57.425 32.000 0.00 0.00 0.00 1.82
2993 8097 7.644490 TGTGAGGTGTATGTGTGTAAAATTTC 58.356 34.615 0.00 0.00 0.00 2.17
2994 8098 7.283354 TGTGAGGTGTATGTGTGTAAAATTTCA 59.717 33.333 0.00 0.00 0.00 2.69
2995 8099 7.803189 GTGAGGTGTATGTGTGTAAAATTTCAG 59.197 37.037 0.00 0.00 0.00 3.02
2996 8100 6.677913 AGGTGTATGTGTGTAAAATTTCAGC 58.322 36.000 0.00 0.00 0.00 4.26
2997 8101 6.264292 AGGTGTATGTGTGTAAAATTTCAGCA 59.736 34.615 0.00 0.00 0.00 4.41
2998 8102 7.039784 AGGTGTATGTGTGTAAAATTTCAGCAT 60.040 33.333 0.00 0.00 0.00 3.79
2999 8103 7.062138 GGTGTATGTGTGTAAAATTTCAGCATG 59.938 37.037 0.00 0.00 37.54 4.06
3015 8119 4.622313 TCAGCATGAAATTCGTTGAAATGC 59.378 37.500 0.00 5.82 45.97 3.56
3016 8120 3.609373 AGCATGAAATTCGTTGAAATGCG 59.391 39.130 0.00 0.00 37.56 4.73
3017 8121 3.607641 GCATGAAATTCGTTGAAATGCGA 59.392 39.130 0.00 0.00 35.17 5.10
3018 8122 4.489206 GCATGAAATTCGTTGAAATGCGAC 60.489 41.667 0.00 0.00 36.82 5.19
3019 8123 3.560503 TGAAATTCGTTGAAATGCGACC 58.439 40.909 0.00 0.00 36.82 4.79
3020 8124 3.252215 TGAAATTCGTTGAAATGCGACCT 59.748 39.130 0.00 0.00 36.82 3.85
3021 8125 2.900122 ATTCGTTGAAATGCGACCTG 57.100 45.000 0.00 0.00 36.82 4.00
3022 8126 1.588674 TTCGTTGAAATGCGACCTGT 58.411 45.000 0.00 0.00 36.82 4.00
3023 8127 2.442212 TCGTTGAAATGCGACCTGTA 57.558 45.000 0.00 0.00 31.76 2.74
3024 8128 2.063266 TCGTTGAAATGCGACCTGTAC 58.937 47.619 0.00 0.00 31.76 2.90
3025 8129 1.795872 CGTTGAAATGCGACCTGTACA 59.204 47.619 0.00 0.00 0.00 2.90
3026 8130 2.222213 CGTTGAAATGCGACCTGTACAA 59.778 45.455 0.00 0.00 0.00 2.41
3027 8131 3.303461 CGTTGAAATGCGACCTGTACAAA 60.303 43.478 0.00 0.00 0.00 2.83
3028 8132 4.602995 GTTGAAATGCGACCTGTACAAAA 58.397 39.130 0.00 0.00 0.00 2.44
3029 8133 4.902443 TGAAATGCGACCTGTACAAAAA 57.098 36.364 0.00 0.00 0.00 1.94
3051 8155 7.552050 AAAAAGACAAATTCATGGTATGGGA 57.448 32.000 0.00 0.00 0.00 4.37
3052 8156 6.780457 AAAGACAAATTCATGGTATGGGAG 57.220 37.500 0.00 0.00 0.00 4.30
3053 8157 4.796606 AGACAAATTCATGGTATGGGAGG 58.203 43.478 0.00 0.00 0.00 4.30
3054 8158 4.478317 AGACAAATTCATGGTATGGGAGGA 59.522 41.667 0.00 0.00 0.00 3.71
3055 8159 5.135020 AGACAAATTCATGGTATGGGAGGAT 59.865 40.000 0.00 0.00 0.00 3.24
3056 8160 5.142639 ACAAATTCATGGTATGGGAGGATG 58.857 41.667 0.00 0.00 0.00 3.51
3057 8161 5.103558 ACAAATTCATGGTATGGGAGGATGA 60.104 40.000 0.00 0.00 0.00 2.92
3058 8162 5.668135 AATTCATGGTATGGGAGGATGAA 57.332 39.130 0.00 0.00 37.42 2.57
3059 8163 5.873111 ATTCATGGTATGGGAGGATGAAT 57.127 39.130 0.00 0.00 38.39 2.57
3060 8164 6.975471 ATTCATGGTATGGGAGGATGAATA 57.025 37.500 0.00 0.00 40.37 1.75
3061 8165 6.378661 TTCATGGTATGGGAGGATGAATAG 57.621 41.667 0.00 0.00 30.05 1.73
3062 8166 5.415065 TCATGGTATGGGAGGATGAATAGT 58.585 41.667 0.00 0.00 0.00 2.12
3063 8167 5.249163 TCATGGTATGGGAGGATGAATAGTG 59.751 44.000 0.00 0.00 0.00 2.74
3064 8168 4.566837 TGGTATGGGAGGATGAATAGTGT 58.433 43.478 0.00 0.00 0.00 3.55
3065 8169 4.593206 TGGTATGGGAGGATGAATAGTGTC 59.407 45.833 0.00 0.00 0.00 3.67
3066 8170 4.593206 GGTATGGGAGGATGAATAGTGTCA 59.407 45.833 0.00 0.00 0.00 3.58
3067 8171 5.249393 GGTATGGGAGGATGAATAGTGTCAT 59.751 44.000 0.00 0.00 41.01 3.06
3068 8172 4.694760 TGGGAGGATGAATAGTGTCATG 57.305 45.455 0.00 0.00 38.38 3.07
3069 8173 4.040047 TGGGAGGATGAATAGTGTCATGT 58.960 43.478 0.00 0.00 38.38 3.21
3070 8174 4.141642 TGGGAGGATGAATAGTGTCATGTG 60.142 45.833 0.00 0.00 38.38 3.21
3071 8175 4.141620 GGGAGGATGAATAGTGTCATGTGT 60.142 45.833 0.00 0.00 38.38 3.72
3072 8176 5.431765 GGAGGATGAATAGTGTCATGTGTT 58.568 41.667 0.00 0.00 38.38 3.32
3073 8177 6.408092 GGGAGGATGAATAGTGTCATGTGTTA 60.408 42.308 0.00 0.00 38.38 2.41
3074 8178 7.047891 GGAGGATGAATAGTGTCATGTGTTAA 58.952 38.462 0.00 0.00 38.38 2.01
3075 8179 7.552687 GGAGGATGAATAGTGTCATGTGTTAAA 59.447 37.037 0.00 0.00 38.38 1.52
3076 8180 8.862325 AGGATGAATAGTGTCATGTGTTAAAA 57.138 30.769 0.00 0.00 38.38 1.52
3077 8181 9.295825 AGGATGAATAGTGTCATGTGTTAAAAA 57.704 29.630 0.00 0.00 38.38 1.94
3078 8182 9.559958 GGATGAATAGTGTCATGTGTTAAAAAG 57.440 33.333 0.00 0.00 38.38 2.27
3079 8183 8.970691 ATGAATAGTGTCATGTGTTAAAAAGC 57.029 30.769 0.00 0.00 36.86 3.51
3080 8184 7.367285 TGAATAGTGTCATGTGTTAAAAAGCC 58.633 34.615 0.00 0.00 0.00 4.35
3081 8185 4.584327 AGTGTCATGTGTTAAAAAGCCC 57.416 40.909 0.00 0.00 0.00 5.19
3082 8186 3.320826 AGTGTCATGTGTTAAAAAGCCCC 59.679 43.478 0.00 0.00 0.00 5.80
3083 8187 3.068873 GTGTCATGTGTTAAAAAGCCCCA 59.931 43.478 0.00 0.00 0.00 4.96
3084 8188 3.320541 TGTCATGTGTTAAAAAGCCCCAG 59.679 43.478 0.00 0.00 0.00 4.45
3085 8189 3.572255 GTCATGTGTTAAAAAGCCCCAGA 59.428 43.478 0.00 0.00 0.00 3.86
3086 8190 4.220602 GTCATGTGTTAAAAAGCCCCAGAT 59.779 41.667 0.00 0.00 0.00 2.90
3087 8191 4.837860 TCATGTGTTAAAAAGCCCCAGATT 59.162 37.500 0.00 0.00 0.00 2.40
3088 8192 5.306678 TCATGTGTTAAAAAGCCCCAGATTT 59.693 36.000 0.00 0.00 31.52 2.17
3089 8193 5.622346 TGTGTTAAAAAGCCCCAGATTTT 57.378 34.783 0.00 0.00 43.19 1.82
3091 8195 7.125792 TGTGTTAAAAAGCCCCAGATTTTTA 57.874 32.000 5.21 5.21 46.71 1.52
3092 8196 7.740805 TGTGTTAAAAAGCCCCAGATTTTTAT 58.259 30.769 9.10 0.00 46.71 1.40
3093 8197 8.214364 TGTGTTAAAAAGCCCCAGATTTTTATT 58.786 29.630 9.10 0.00 46.71 1.40
3094 8198 9.062524 GTGTTAAAAAGCCCCAGATTTTTATTT 57.937 29.630 9.10 0.00 46.71 1.40
3095 8199 9.634021 TGTTAAAAAGCCCCAGATTTTTATTTT 57.366 25.926 9.10 0.00 46.71 1.82
3115 8219 2.957491 TTTTGCACAACCCTCACTTG 57.043 45.000 0.00 0.00 0.00 3.16
3116 8220 2.136298 TTTGCACAACCCTCACTTGA 57.864 45.000 0.00 0.00 0.00 3.02
3117 8221 2.136298 TTGCACAACCCTCACTTGAA 57.864 45.000 0.00 0.00 0.00 2.69
3118 8222 2.136298 TGCACAACCCTCACTTGAAA 57.864 45.000 0.00 0.00 0.00 2.69
3119 8223 2.023673 TGCACAACCCTCACTTGAAAG 58.976 47.619 0.00 0.00 0.00 2.62
3120 8224 2.024414 GCACAACCCTCACTTGAAAGT 58.976 47.619 0.00 0.00 40.60 2.66
3121 8225 3.211045 GCACAACCCTCACTTGAAAGTA 58.789 45.455 0.00 0.00 37.08 2.24
3122 8226 3.821033 GCACAACCCTCACTTGAAAGTAT 59.179 43.478 0.00 0.00 37.08 2.12
3123 8227 4.278419 GCACAACCCTCACTTGAAAGTATT 59.722 41.667 0.00 0.00 37.08 1.89
3124 8228 5.221244 GCACAACCCTCACTTGAAAGTATTT 60.221 40.000 0.00 0.00 43.98 1.40
3150 8254 8.243426 TCATCCTGAAAATTTACACACTTATGC 58.757 33.333 0.00 0.00 0.00 3.14
3151 8255 7.517614 TCCTGAAAATTTACACACTTATGCA 57.482 32.000 0.00 0.00 0.00 3.96
3152 8256 8.121305 TCCTGAAAATTTACACACTTATGCAT 57.879 30.769 3.79 3.79 0.00 3.96
3153 8257 8.584157 TCCTGAAAATTTACACACTTATGCATT 58.416 29.630 3.54 0.00 0.00 3.56
3154 8258 9.853555 CCTGAAAATTTACACACTTATGCATTA 57.146 29.630 3.54 0.00 0.00 1.90
3159 8263 9.585099 AAATTTACACACTTATGCATTATGGTG 57.415 29.630 3.54 11.67 33.25 4.17
3160 8264 7.695480 TTTACACACTTATGCATTATGGTGT 57.305 32.000 22.04 22.04 40.82 4.16
3161 8265 5.818136 ACACACTTATGCATTATGGTGTC 57.182 39.130 3.54 0.00 36.01 3.67
3162 8266 5.252547 ACACACTTATGCATTATGGTGTCA 58.747 37.500 3.54 0.00 36.01 3.58
3163 8267 5.887598 ACACACTTATGCATTATGGTGTCAT 59.112 36.000 3.54 3.65 36.01 3.06
3164 8268 6.183360 ACACACTTATGCATTATGGTGTCATG 60.183 38.462 3.54 6.56 36.01 3.07
3165 8269 5.217393 CACTTATGCATTATGGTGTCATGC 58.783 41.667 3.54 0.00 43.13 4.06
3168 8272 3.719173 TGCATTATGGTGTCATGCATG 57.281 42.857 21.07 21.07 46.53 4.06
3169 8273 3.025262 TGCATTATGGTGTCATGCATGT 58.975 40.909 25.43 8.46 46.53 3.21
3170 8274 3.067040 TGCATTATGGTGTCATGCATGTC 59.933 43.478 25.43 20.50 46.53 3.06
3171 8275 3.317149 GCATTATGGTGTCATGCATGTCT 59.683 43.478 25.43 7.52 42.49 3.41
3172 8276 4.791734 GCATTATGGTGTCATGCATGTCTG 60.792 45.833 25.43 13.22 42.49 3.51
3173 8277 2.502142 ATGGTGTCATGCATGTCTGT 57.498 45.000 25.43 6.44 31.34 3.41
3174 8278 3.632643 ATGGTGTCATGCATGTCTGTA 57.367 42.857 25.43 11.55 31.34 2.74
3175 8279 3.632643 TGGTGTCATGCATGTCTGTAT 57.367 42.857 25.43 0.00 0.00 2.29
3176 8280 3.954200 TGGTGTCATGCATGTCTGTATT 58.046 40.909 25.43 0.00 0.00 1.89
3177 8281 4.334552 TGGTGTCATGCATGTCTGTATTT 58.665 39.130 25.43 0.00 0.00 1.40
3178 8282 4.766373 TGGTGTCATGCATGTCTGTATTTT 59.234 37.500 25.43 0.00 0.00 1.82
3179 8283 5.243507 TGGTGTCATGCATGTCTGTATTTTT 59.756 36.000 25.43 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.798511 GGGGGAGGAGGGCGAAAG 61.799 72.222 0.00 0.00 0.00 2.62
24 25 1.383248 TTTTTGTGGGGTGTGGGGG 60.383 57.895 0.00 0.00 0.00 5.40
25 26 4.382852 TTTTTGTGGGGTGTGGGG 57.617 55.556 0.00 0.00 0.00 4.96
41 42 5.487433 GCCAAGGTAGCAAATATGGTTTTT 58.513 37.500 0.00 0.00 38.46 1.94
42 43 4.081142 GGCCAAGGTAGCAAATATGGTTTT 60.081 41.667 0.00 0.00 38.46 2.43
43 44 3.450817 GGCCAAGGTAGCAAATATGGTTT 59.549 43.478 0.00 0.00 38.46 3.27
44 45 3.031013 GGCCAAGGTAGCAAATATGGTT 58.969 45.455 0.00 0.00 38.46 3.67
45 46 2.666317 GGCCAAGGTAGCAAATATGGT 58.334 47.619 0.00 0.00 41.03 3.55
46 47 1.963515 GGGCCAAGGTAGCAAATATGG 59.036 52.381 4.39 0.00 0.00 2.74
47 48 1.963515 GGGGCCAAGGTAGCAAATATG 59.036 52.381 4.39 0.00 0.00 1.78
48 49 1.133167 GGGGGCCAAGGTAGCAAATAT 60.133 52.381 4.39 0.00 0.00 1.28
49 50 0.260523 GGGGGCCAAGGTAGCAAATA 59.739 55.000 4.39 0.00 0.00 1.40
50 51 1.001631 GGGGGCCAAGGTAGCAAAT 59.998 57.895 4.39 0.00 0.00 2.32
51 52 1.735455 AAGGGGGCCAAGGTAGCAAA 61.735 55.000 4.39 0.00 0.00 3.68
52 53 2.167037 AAGGGGGCCAAGGTAGCAA 61.167 57.895 4.39 0.00 0.00 3.91
53 54 2.534272 AAGGGGGCCAAGGTAGCA 60.534 61.111 4.39 0.00 0.00 3.49
54 55 2.043953 CAAGGGGGCCAAGGTAGC 60.044 66.667 4.39 0.00 0.00 3.58
55 56 0.323451 GTTCAAGGGGGCCAAGGTAG 60.323 60.000 4.39 0.00 0.00 3.18
56 57 1.068943 TGTTCAAGGGGGCCAAGGTA 61.069 55.000 4.39 0.00 0.00 3.08
57 58 1.739608 ATGTTCAAGGGGGCCAAGGT 61.740 55.000 4.39 0.00 0.00 3.50
58 59 0.972471 GATGTTCAAGGGGGCCAAGG 60.972 60.000 4.39 0.00 0.00 3.61
59 60 0.972471 GGATGTTCAAGGGGGCCAAG 60.972 60.000 4.39 0.00 0.00 3.61
60 61 1.078347 GGATGTTCAAGGGGGCCAA 59.922 57.895 4.39 0.00 0.00 4.52
61 62 1.856873 AGGATGTTCAAGGGGGCCA 60.857 57.895 4.39 0.00 0.00 5.36
62 63 1.380380 CAGGATGTTCAAGGGGGCC 60.380 63.158 0.00 0.00 0.00 5.80
63 64 4.344237 CAGGATGTTCAAGGGGGC 57.656 61.111 0.00 0.00 0.00 5.80
86 87 1.982073 GCGAGAAACCAATGGCGGAG 61.982 60.000 0.00 0.00 0.00 4.63
87 88 2.038269 GCGAGAAACCAATGGCGGA 61.038 57.895 0.00 0.00 0.00 5.54
88 89 1.656818 ATGCGAGAAACCAATGGCGG 61.657 55.000 0.00 0.00 0.00 6.13
89 90 1.013596 TATGCGAGAAACCAATGGCG 58.986 50.000 0.00 0.00 0.00 5.69
90 91 1.742831 TGTATGCGAGAAACCAATGGC 59.257 47.619 0.00 0.00 0.00 4.40
91 92 4.433186 TTTGTATGCGAGAAACCAATGG 57.567 40.909 0.00 0.00 0.00 3.16
92 93 4.266029 GCATTTGTATGCGAGAAACCAATG 59.734 41.667 0.00 0.00 46.89 2.82
93 94 4.423732 GCATTTGTATGCGAGAAACCAAT 58.576 39.130 0.00 0.00 46.89 3.16
94 95 3.832276 GCATTTGTATGCGAGAAACCAA 58.168 40.909 0.00 0.00 46.89 3.67
95 96 3.485947 GCATTTGTATGCGAGAAACCA 57.514 42.857 0.00 0.00 46.89 3.67
114 115 3.926527 TGTATATATGCACTAGCTTGCGC 59.073 43.478 0.00 0.00 46.20 6.09
119 120 7.679783 TGGATTTGTGTATATATGCACTAGCT 58.320 34.615 27.35 15.14 42.76 3.32
122 123 8.655901 TCCTTGGATTTGTGTATATATGCACTA 58.344 33.333 27.35 20.37 42.76 2.74
252 261 8.900781 AGAAAATTCCATATGTGAACTGATCTG 58.099 33.333 1.24 0.00 0.00 2.90
380 415 2.489275 CCGTGGTTTGGCAAGTGCT 61.489 57.895 0.00 0.00 41.70 4.40
403 438 1.516603 GAGAACGTAGCGGTGCTCC 60.517 63.158 0.00 0.00 40.44 4.70
405 440 2.214181 CTGGAGAACGTAGCGGTGCT 62.214 60.000 0.00 0.00 43.41 4.40
406 441 1.805945 CTGGAGAACGTAGCGGTGC 60.806 63.158 0.00 0.00 0.00 5.01
407 442 1.805945 GCTGGAGAACGTAGCGGTG 60.806 63.158 0.00 0.00 0.00 4.94
408 443 2.572284 GCTGGAGAACGTAGCGGT 59.428 61.111 0.00 0.00 0.00 5.68
409 444 2.202756 GGCTGGAGAACGTAGCGG 60.203 66.667 1.42 0.00 38.31 5.52
410 445 2.202756 GGGCTGGAGAACGTAGCG 60.203 66.667 1.42 0.00 38.31 4.26
411 446 2.187163 GGGGCTGGAGAACGTAGC 59.813 66.667 0.00 0.00 36.74 3.58
412 447 1.392710 ATCGGGGCTGGAGAACGTAG 61.393 60.000 0.00 0.00 0.00 3.51
414 449 2.683933 ATCGGGGCTGGAGAACGT 60.684 61.111 0.00 0.00 0.00 3.99
415 450 2.202932 CATCGGGGCTGGAGAACG 60.203 66.667 0.00 0.00 0.00 3.95
457 1744 0.540365 AAGATGGGGTTGCAGGTGTG 60.540 55.000 0.00 0.00 0.00 3.82
490 1791 1.062587 CGGAGGCAGCAGAAATAAACG 59.937 52.381 0.00 0.00 0.00 3.60
757 5767 2.588877 GCACCTGCAGTCGTGTGT 60.589 61.111 19.98 5.28 41.59 3.72
762 5772 2.661537 TTGTCGCACCTGCAGTCG 60.662 61.111 13.81 12.89 42.21 4.18
818 5829 1.528292 GGATCCCGATCGAGTGAGGG 61.528 65.000 18.66 8.17 45.10 4.30
863 5874 4.113354 CTCGATTTGTAGAACTAGGTGCC 58.887 47.826 0.00 0.00 0.00 5.01
930 5945 5.344207 ACAAGCAGAGTAAAAGCTAAACG 57.656 39.130 0.00 0.00 37.70 3.60
936 5951 5.388944 CAGATGAACAAGCAGAGTAAAAGC 58.611 41.667 0.00 0.00 0.00 3.51
1006 6045 6.019640 TGCTTCAGCTTCTTTTCGAAAAATTG 60.020 34.615 22.67 15.61 42.66 2.32
1017 6056 3.696051 TGTCAACTTGCTTCAGCTTCTTT 59.304 39.130 0.00 0.00 42.66 2.52
1071 6110 5.013913 CCTGGGAATGATCTTGATATCACCT 59.986 44.000 4.48 0.00 38.65 4.00
1183 6222 2.699954 TCCATTTTCTTCGCTGTCTCC 58.300 47.619 0.00 0.00 0.00 3.71
1191 6230 6.545504 TCAGAACTTCTTCCATTTTCTTCG 57.454 37.500 0.00 0.00 0.00 3.79
1209 6248 4.466015 TCACTGGCATGTAGTACATCAGAA 59.534 41.667 26.79 16.69 36.53 3.02
1210 6249 4.023291 TCACTGGCATGTAGTACATCAGA 58.977 43.478 26.79 11.79 36.53 3.27
1219 6258 7.609960 AGATACTCATAATCACTGGCATGTAG 58.390 38.462 0.00 0.00 0.00 2.74
1220 6259 7.233348 TGAGATACTCATAATCACTGGCATGTA 59.767 37.037 0.00 0.00 35.39 2.29
1221 6260 6.042437 TGAGATACTCATAATCACTGGCATGT 59.958 38.462 0.00 0.00 35.39 3.21
1311 6350 7.060421 TCAGGAGTCCAACTTTAGTTTCAAAT 58.940 34.615 12.86 0.00 35.83 2.32
1342 6381 4.223032 AGATTTCCGACATTCTGGTGTAGT 59.777 41.667 0.00 0.00 31.16 2.73
1350 6389 5.560724 TCCTTTTCAGATTTCCGACATTCT 58.439 37.500 0.00 0.00 0.00 2.40
1358 6397 5.069119 ACAGTTGGTTCCTTTTCAGATTTCC 59.931 40.000 0.00 0.00 0.00 3.13
1722 6777 8.067784 CGCACAAAAGAAAACTTCTACATAAGA 58.932 33.333 0.00 0.00 39.61 2.10
1733 6788 2.284952 GCAATGCGCACAAAAGAAAACT 59.715 40.909 14.90 0.00 41.79 2.66
1885 6943 9.773328 ATGATGTTATTTCGACAAATACAACAG 57.227 29.630 0.00 0.00 35.42 3.16
1918 6979 3.356529 AGGTGGCCATTAGAACTTCTG 57.643 47.619 9.72 0.00 0.00 3.02
1936 6997 5.406780 CAGTCTCTGTGCAAGTAAAAGTAGG 59.593 44.000 0.00 0.00 0.00 3.18
2012 7074 3.117512 TGTTTTGCCTTCTTCCTTCCTCT 60.118 43.478 0.00 0.00 0.00 3.69
2026 7088 1.618343 AGGTATTGTGCCTGTTTTGCC 59.382 47.619 0.00 0.00 34.56 4.52
2038 7100 3.704566 TCTAGTCGATGGCAAGGTATTGT 59.295 43.478 0.00 0.00 38.76 2.71
2051 7113 1.477923 GGCCCTGAGAGTCTAGTCGAT 60.478 57.143 0.00 0.00 0.00 3.59
2052 7114 0.107116 GGCCCTGAGAGTCTAGTCGA 60.107 60.000 0.00 0.00 0.00 4.20
2053 7115 0.394488 TGGCCCTGAGAGTCTAGTCG 60.394 60.000 0.00 0.00 0.00 4.18
2124 7186 6.565234 AGTGATCTTAACACCATCTAAGTCG 58.435 40.000 0.00 0.00 38.82 4.18
2126 7188 7.482169 TGAGTGATCTTAACACCATCTAAGT 57.518 36.000 0.00 0.00 38.82 2.24
2240 7302 4.270084 CGACAAAAGAAGCTACAACAGACA 59.730 41.667 0.00 0.00 0.00 3.41
2265 7327 3.914426 ATCGAAAGGGTTACATCTGCT 57.086 42.857 0.00 0.00 0.00 4.24
2334 7396 7.038231 GCTATTTAATCTAAAGGCTAGGGAGGA 60.038 40.741 0.00 0.00 31.92 3.71
2351 7413 7.201732 CCAACGATCCAGACTTTGCTATTTAAT 60.202 37.037 0.00 0.00 0.00 1.40
2358 7420 1.347707 TCCAACGATCCAGACTTTGCT 59.652 47.619 0.00 0.00 0.00 3.91
2376 7438 3.874392 AGTTTTATGCTGCAATGGTCC 57.126 42.857 6.36 0.00 0.00 4.46
2400 7462 8.455903 ACTATGATGTTGCAAATGTATAGCTT 57.544 30.769 0.00 0.00 0.00 3.74
2401 7463 9.212641 CTACTATGATGTTGCAAATGTATAGCT 57.787 33.333 0.00 0.00 0.00 3.32
2425 7487 9.562408 TTTTGACACACCACAATATAAGTTCTA 57.438 29.630 0.00 0.00 0.00 2.10
2433 7495 8.415950 TCCTTATTTTTGACACACCACAATAT 57.584 30.769 0.00 0.00 0.00 1.28
2435 7497 6.549364 TCTCCTTATTTTTGACACACCACAAT 59.451 34.615 0.00 0.00 0.00 2.71
2503 7574 5.830000 TTTTGCTCTGATCAATGAGGATG 57.170 39.130 12.48 0.00 31.10 3.51
2514 7603 2.806945 TTCGGGGATTTTGCTCTGAT 57.193 45.000 0.00 0.00 0.00 2.90
2517 7606 3.154827 TCTTTTCGGGGATTTTGCTCT 57.845 42.857 0.00 0.00 0.00 4.09
2523 7612 5.016173 TGTGATGATTCTTTTCGGGGATTT 58.984 37.500 0.00 0.00 0.00 2.17
2550 7639 7.449395 ACGTGGGTTTACATGCTATATAGAGTA 59.551 37.037 14.16 9.41 0.00 2.59
2551 7640 6.267014 ACGTGGGTTTACATGCTATATAGAGT 59.733 38.462 14.16 10.31 0.00 3.24
2552 7641 6.688578 ACGTGGGTTTACATGCTATATAGAG 58.311 40.000 14.16 5.03 0.00 2.43
2553 7642 6.659745 ACGTGGGTTTACATGCTATATAGA 57.340 37.500 14.16 0.00 0.00 1.98
2554 7643 7.724305 AAACGTGGGTTTACATGCTATATAG 57.276 36.000 5.30 5.30 44.30 1.31
2594 7696 6.482308 AGGTCGGCTATAAATGTTGTATGTTC 59.518 38.462 0.00 0.00 0.00 3.18
2595 7697 6.354130 AGGTCGGCTATAAATGTTGTATGTT 58.646 36.000 0.00 0.00 0.00 2.71
2596 7698 5.925509 AGGTCGGCTATAAATGTTGTATGT 58.074 37.500 0.00 0.00 0.00 2.29
2597 7699 6.861065 AAGGTCGGCTATAAATGTTGTATG 57.139 37.500 0.00 0.00 0.00 2.39
2598 7700 8.426489 TCTTAAGGTCGGCTATAAATGTTGTAT 58.574 33.333 1.85 0.00 0.00 2.29
2599 7701 7.784037 TCTTAAGGTCGGCTATAAATGTTGTA 58.216 34.615 1.85 0.00 0.00 2.41
2600 7702 6.646267 TCTTAAGGTCGGCTATAAATGTTGT 58.354 36.000 1.85 0.00 0.00 3.32
2601 7703 7.548196 TTCTTAAGGTCGGCTATAAATGTTG 57.452 36.000 1.85 0.00 0.00 3.33
2602 7704 7.990886 TGATTCTTAAGGTCGGCTATAAATGTT 59.009 33.333 1.85 0.00 0.00 2.71
2603 7705 7.506114 TGATTCTTAAGGTCGGCTATAAATGT 58.494 34.615 1.85 0.00 0.00 2.71
2604 7706 7.962964 TGATTCTTAAGGTCGGCTATAAATG 57.037 36.000 1.85 0.00 0.00 2.32
2605 7707 8.375506 TGATGATTCTTAAGGTCGGCTATAAAT 58.624 33.333 1.85 0.00 0.00 1.40
2606 7708 7.656137 GTGATGATTCTTAAGGTCGGCTATAAA 59.344 37.037 1.85 0.00 0.00 1.40
2609 7711 5.070446 TGTGATGATTCTTAAGGTCGGCTAT 59.930 40.000 1.85 0.00 0.00 2.97
2614 7716 6.092670 ACATGTTGTGATGATTCTTAAGGTCG 59.907 38.462 1.85 0.00 0.00 4.79
2675 7777 9.329913 GTTACAACATTTTGTTAGACATGCTAG 57.670 33.333 1.97 0.00 43.89 3.42
2705 7807 5.205821 ACAAAGGTTAGCTTTGGGTTACTT 58.794 37.500 31.39 13.06 43.73 2.24
2707 7809 4.022589 GGACAAAGGTTAGCTTTGGGTTAC 60.023 45.833 31.39 19.46 43.73 2.50
2741 7844 3.386486 CGACGAGTCTCTAGCTATGAGT 58.614 50.000 15.45 10.48 33.59 3.41
2761 7864 2.202610 TGAGCCAGATTCGTCGCG 60.203 61.111 0.00 0.00 0.00 5.87
2811 7915 0.804989 GTCAAGGCGGATGAGTTTGG 59.195 55.000 0.00 0.00 0.00 3.28
2822 7926 2.876368 GATGGTGGGAGGTCAAGGCG 62.876 65.000 0.00 0.00 0.00 5.52
2826 7930 1.928567 GGGGATGGTGGGAGGTCAA 60.929 63.158 0.00 0.00 0.00 3.18
2863 7967 5.163280 CCCTATTCAACTCAAACGGGGTATA 60.163 44.000 0.00 0.00 0.00 1.47
2866 7970 2.290705 CCCTATTCAACTCAAACGGGGT 60.291 50.000 0.00 0.00 0.00 4.95
2875 7979 7.557719 TGAGATCCAAAATTCCCTATTCAACTC 59.442 37.037 0.00 0.00 0.00 3.01
2876 7980 7.413446 TGAGATCCAAAATTCCCTATTCAACT 58.587 34.615 0.00 0.00 0.00 3.16
2877 7981 7.645058 TGAGATCCAAAATTCCCTATTCAAC 57.355 36.000 0.00 0.00 0.00 3.18
2878 7982 6.322201 GCTGAGATCCAAAATTCCCTATTCAA 59.678 38.462 0.00 0.00 0.00 2.69
2879 7983 5.829924 GCTGAGATCCAAAATTCCCTATTCA 59.170 40.000 0.00 0.00 0.00 2.57
2880 7984 5.829924 TGCTGAGATCCAAAATTCCCTATTC 59.170 40.000 0.00 0.00 0.00 1.75
2881 7985 5.769835 TGCTGAGATCCAAAATTCCCTATT 58.230 37.500 0.00 0.00 0.00 1.73
2882 7986 5.393068 TGCTGAGATCCAAAATTCCCTAT 57.607 39.130 0.00 0.00 0.00 2.57
2883 7987 4.860802 TGCTGAGATCCAAAATTCCCTA 57.139 40.909 0.00 0.00 0.00 3.53
2884 7988 3.744940 TGCTGAGATCCAAAATTCCCT 57.255 42.857 0.00 0.00 0.00 4.20
2885 7989 4.806640 TTTGCTGAGATCCAAAATTCCC 57.193 40.909 0.00 0.00 0.00 3.97
2886 7990 6.400568 TGAATTTGCTGAGATCCAAAATTCC 58.599 36.000 18.85 10.23 39.22 3.01
2887 7991 7.894376 TTGAATTTGCTGAGATCCAAAATTC 57.106 32.000 16.97 16.97 39.78 2.17
2888 7992 8.680039 TTTTGAATTTGCTGAGATCCAAAATT 57.320 26.923 0.00 3.74 34.93 1.82
2889 7993 8.857694 ATTTTGAATTTGCTGAGATCCAAAAT 57.142 26.923 0.00 0.00 37.82 1.82
2890 7994 8.680039 AATTTTGAATTTGCTGAGATCCAAAA 57.320 26.923 0.00 0.00 36.90 2.44
2891 7995 7.932491 TGAATTTTGAATTTGCTGAGATCCAAA 59.068 29.630 0.00 0.00 35.64 3.28
2892 7996 7.443477 TGAATTTTGAATTTGCTGAGATCCAA 58.557 30.769 0.00 0.00 0.00 3.53
2893 7997 6.995364 TGAATTTTGAATTTGCTGAGATCCA 58.005 32.000 0.00 0.00 0.00 3.41
2894 7998 7.894376 TTGAATTTTGAATTTGCTGAGATCC 57.106 32.000 0.00 0.00 0.00 3.36
2960 8064 5.241506 CACACATACACCTCACATCCTTTTT 59.758 40.000 0.00 0.00 0.00 1.94
2961 8065 4.761739 CACACATACACCTCACATCCTTTT 59.238 41.667 0.00 0.00 0.00 2.27
2962 8066 4.202461 ACACACATACACCTCACATCCTTT 60.202 41.667 0.00 0.00 0.00 3.11
2963 8067 3.327757 ACACACATACACCTCACATCCTT 59.672 43.478 0.00 0.00 0.00 3.36
2964 8068 2.906389 ACACACATACACCTCACATCCT 59.094 45.455 0.00 0.00 0.00 3.24
2965 8069 3.334583 ACACACATACACCTCACATCC 57.665 47.619 0.00 0.00 0.00 3.51
2966 8070 6.795098 TTTTACACACATACACCTCACATC 57.205 37.500 0.00 0.00 0.00 3.06
2967 8071 7.759489 AATTTTACACACATACACCTCACAT 57.241 32.000 0.00 0.00 0.00 3.21
2968 8072 7.283354 TGAAATTTTACACACATACACCTCACA 59.717 33.333 0.00 0.00 0.00 3.58
2969 8073 7.644490 TGAAATTTTACACACATACACCTCAC 58.356 34.615 0.00 0.00 0.00 3.51
2970 8074 7.521423 GCTGAAATTTTACACACATACACCTCA 60.521 37.037 0.00 0.00 0.00 3.86
2971 8075 6.801862 GCTGAAATTTTACACACATACACCTC 59.198 38.462 0.00 0.00 0.00 3.85
2972 8076 6.264292 TGCTGAAATTTTACACACATACACCT 59.736 34.615 0.00 0.00 0.00 4.00
2973 8077 6.442952 TGCTGAAATTTTACACACATACACC 58.557 36.000 0.00 0.00 0.00 4.16
2974 8078 7.807433 TCATGCTGAAATTTTACACACATACAC 59.193 33.333 0.00 0.00 0.00 2.90
2975 8079 7.880105 TCATGCTGAAATTTTACACACATACA 58.120 30.769 0.00 0.00 0.00 2.29
2976 8080 8.741101 TTCATGCTGAAATTTTACACACATAC 57.259 30.769 0.00 0.00 32.71 2.39
2991 8095 5.118971 GCATTTCAACGAATTTCATGCTGAA 59.881 36.000 8.91 3.79 32.58 3.02
2992 8096 4.622313 GCATTTCAACGAATTTCATGCTGA 59.378 37.500 8.91 0.00 32.58 4.26
2993 8097 4.489682 CGCATTTCAACGAATTTCATGCTG 60.490 41.667 12.50 5.63 32.92 4.41
2994 8098 3.609373 CGCATTTCAACGAATTTCATGCT 59.391 39.130 12.50 0.00 32.92 3.79
2995 8099 3.607641 TCGCATTTCAACGAATTTCATGC 59.392 39.130 6.93 6.93 34.93 4.06
2996 8100 4.030529 GGTCGCATTTCAACGAATTTCATG 59.969 41.667 0.00 0.00 40.47 3.07
2997 8101 4.082787 AGGTCGCATTTCAACGAATTTCAT 60.083 37.500 0.00 0.00 40.47 2.57
2998 8102 3.252215 AGGTCGCATTTCAACGAATTTCA 59.748 39.130 0.00 0.00 40.47 2.69
2999 8103 3.603770 CAGGTCGCATTTCAACGAATTTC 59.396 43.478 0.00 0.00 40.47 2.17
3000 8104 3.004315 ACAGGTCGCATTTCAACGAATTT 59.996 39.130 0.00 0.00 40.47 1.82
3001 8105 2.552315 ACAGGTCGCATTTCAACGAATT 59.448 40.909 0.00 0.00 40.47 2.17
3002 8106 2.151202 ACAGGTCGCATTTCAACGAAT 58.849 42.857 0.00 0.00 40.47 3.34
3003 8107 1.588674 ACAGGTCGCATTTCAACGAA 58.411 45.000 0.00 0.00 40.47 3.85
3004 8108 2.063266 GTACAGGTCGCATTTCAACGA 58.937 47.619 0.00 0.00 35.62 3.85
3005 8109 1.795872 TGTACAGGTCGCATTTCAACG 59.204 47.619 0.00 0.00 0.00 4.10
3006 8110 3.889196 TTGTACAGGTCGCATTTCAAC 57.111 42.857 0.00 0.00 0.00 3.18
3007 8111 4.902443 TTTTGTACAGGTCGCATTTCAA 57.098 36.364 0.00 0.00 0.00 2.69
3008 8112 4.902443 TTTTTGTACAGGTCGCATTTCA 57.098 36.364 0.00 0.00 0.00 2.69
3027 8131 7.310609 CCTCCCATACCATGAATTTGTCTTTTT 60.311 37.037 0.00 0.00 0.00 1.94
3028 8132 6.155049 CCTCCCATACCATGAATTTGTCTTTT 59.845 38.462 0.00 0.00 0.00 2.27
3029 8133 5.658190 CCTCCCATACCATGAATTTGTCTTT 59.342 40.000 0.00 0.00 0.00 2.52
3030 8134 5.044179 TCCTCCCATACCATGAATTTGTCTT 60.044 40.000 0.00 0.00 0.00 3.01
3031 8135 4.478317 TCCTCCCATACCATGAATTTGTCT 59.522 41.667 0.00 0.00 0.00 3.41
3032 8136 4.792068 TCCTCCCATACCATGAATTTGTC 58.208 43.478 0.00 0.00 0.00 3.18
3033 8137 4.879295 TCCTCCCATACCATGAATTTGT 57.121 40.909 0.00 0.00 0.00 2.83
3034 8138 5.387788 TCATCCTCCCATACCATGAATTTG 58.612 41.667 0.00 0.00 0.00 2.32
3035 8139 5.668135 TCATCCTCCCATACCATGAATTT 57.332 39.130 0.00 0.00 0.00 1.82
3036 8140 5.668135 TTCATCCTCCCATACCATGAATT 57.332 39.130 0.00 0.00 30.30 2.17
3037 8141 5.873111 ATTCATCCTCCCATACCATGAAT 57.127 39.130 0.00 0.00 38.69 2.57
3038 8142 5.851693 ACTATTCATCCTCCCATACCATGAA 59.148 40.000 0.00 0.00 37.75 2.57
3039 8143 5.249163 CACTATTCATCCTCCCATACCATGA 59.751 44.000 0.00 0.00 0.00 3.07
3040 8144 5.013495 ACACTATTCATCCTCCCATACCATG 59.987 44.000 0.00 0.00 0.00 3.66
3041 8145 5.165652 ACACTATTCATCCTCCCATACCAT 58.834 41.667 0.00 0.00 0.00 3.55
3042 8146 4.566837 ACACTATTCATCCTCCCATACCA 58.433 43.478 0.00 0.00 0.00 3.25
3043 8147 4.593206 TGACACTATTCATCCTCCCATACC 59.407 45.833 0.00 0.00 0.00 2.73
3044 8148 5.808366 TGACACTATTCATCCTCCCATAC 57.192 43.478 0.00 0.00 0.00 2.39
3045 8149 5.846164 ACATGACACTATTCATCCTCCCATA 59.154 40.000 0.00 0.00 33.74 2.74
3046 8150 4.662179 ACATGACACTATTCATCCTCCCAT 59.338 41.667 0.00 0.00 33.74 4.00
3047 8151 4.040047 ACATGACACTATTCATCCTCCCA 58.960 43.478 0.00 0.00 33.74 4.37
3048 8152 4.141620 ACACATGACACTATTCATCCTCCC 60.142 45.833 0.00 0.00 33.74 4.30
3049 8153 5.028549 ACACATGACACTATTCATCCTCC 57.971 43.478 0.00 0.00 33.74 4.30
3050 8154 8.492673 TTTAACACATGACACTATTCATCCTC 57.507 34.615 0.00 0.00 33.74 3.71
3051 8155 8.862325 TTTTAACACATGACACTATTCATCCT 57.138 30.769 0.00 0.00 33.74 3.24
3052 8156 9.559958 CTTTTTAACACATGACACTATTCATCC 57.440 33.333 0.00 0.00 33.74 3.51
3053 8157 9.065871 GCTTTTTAACACATGACACTATTCATC 57.934 33.333 0.00 0.00 33.74 2.92
3054 8158 8.028938 GGCTTTTTAACACATGACACTATTCAT 58.971 33.333 0.00 0.00 36.62 2.57
3055 8159 7.367285 GGCTTTTTAACACATGACACTATTCA 58.633 34.615 0.00 0.00 0.00 2.57
3056 8160 6.806739 GGGCTTTTTAACACATGACACTATTC 59.193 38.462 0.00 0.00 0.00 1.75
3057 8161 6.295067 GGGGCTTTTTAACACATGACACTATT 60.295 38.462 0.00 0.00 0.00 1.73
3058 8162 5.185056 GGGGCTTTTTAACACATGACACTAT 59.815 40.000 0.00 0.00 0.00 2.12
3059 8163 4.521256 GGGGCTTTTTAACACATGACACTA 59.479 41.667 0.00 0.00 0.00 2.74
3060 8164 3.320826 GGGGCTTTTTAACACATGACACT 59.679 43.478 0.00 0.00 0.00 3.55
3061 8165 3.068873 TGGGGCTTTTTAACACATGACAC 59.931 43.478 0.00 0.00 0.00 3.67
3062 8166 3.300388 TGGGGCTTTTTAACACATGACA 58.700 40.909 0.00 0.00 0.00 3.58
3063 8167 3.572255 TCTGGGGCTTTTTAACACATGAC 59.428 43.478 0.00 0.00 0.00 3.06
3064 8168 3.838565 TCTGGGGCTTTTTAACACATGA 58.161 40.909 0.00 0.00 0.00 3.07
3065 8169 4.806640 ATCTGGGGCTTTTTAACACATG 57.193 40.909 0.00 0.00 0.00 3.21
3066 8170 5.823861 AAATCTGGGGCTTTTTAACACAT 57.176 34.783 0.00 0.00 0.00 3.21
3067 8171 5.622346 AAAATCTGGGGCTTTTTAACACA 57.378 34.783 0.00 0.00 0.00 3.72
3068 8172 8.615878 AATAAAAATCTGGGGCTTTTTAACAC 57.384 30.769 5.73 0.00 39.14 3.32
3069 8173 9.634021 AAAATAAAAATCTGGGGCTTTTTAACA 57.366 25.926 5.73 0.00 39.14 2.41
3095 8199 2.828520 TCAAGTGAGGGTTGTGCAAAAA 59.171 40.909 0.00 0.00 0.00 1.94
3096 8200 2.451490 TCAAGTGAGGGTTGTGCAAAA 58.549 42.857 0.00 0.00 0.00 2.44
3097 8201 2.136298 TCAAGTGAGGGTTGTGCAAA 57.864 45.000 0.00 0.00 0.00 3.68
3098 8202 2.136298 TTCAAGTGAGGGTTGTGCAA 57.864 45.000 0.00 0.00 0.00 4.08
3099 8203 2.023673 CTTTCAAGTGAGGGTTGTGCA 58.976 47.619 0.00 0.00 0.00 4.57
3100 8204 2.024414 ACTTTCAAGTGAGGGTTGTGC 58.976 47.619 0.00 0.00 37.98 4.57
3101 8205 6.039270 TGAAATACTTTCAAGTGAGGGTTGTG 59.961 38.462 2.26 0.00 45.94 3.33
3102 8206 6.126409 TGAAATACTTTCAAGTGAGGGTTGT 58.874 36.000 2.26 0.00 45.94 3.32
3103 8207 6.633500 TGAAATACTTTCAAGTGAGGGTTG 57.367 37.500 2.26 0.00 45.94 3.77
3125 8229 8.028354 TGCATAAGTGTGTAAATTTTCAGGATG 58.972 33.333 0.00 0.00 37.54 3.51
3126 8230 8.121305 TGCATAAGTGTGTAAATTTTCAGGAT 57.879 30.769 0.00 0.00 0.00 3.24
3127 8231 7.517614 TGCATAAGTGTGTAAATTTTCAGGA 57.482 32.000 0.00 0.00 0.00 3.86
3128 8232 8.761575 AATGCATAAGTGTGTAAATTTTCAGG 57.238 30.769 0.00 0.00 0.00 3.86
3133 8237 9.585099 CACCATAATGCATAAGTGTGTAAATTT 57.415 29.630 0.00 0.00 0.00 1.82
3134 8238 8.748412 ACACCATAATGCATAAGTGTGTAAATT 58.252 29.630 18.01 0.00 35.13 1.82
3135 8239 8.292444 ACACCATAATGCATAAGTGTGTAAAT 57.708 30.769 18.01 0.00 35.13 1.40
3136 8240 7.391833 TGACACCATAATGCATAAGTGTGTAAA 59.608 33.333 21.52 12.61 36.03 2.01
3137 8241 6.881602 TGACACCATAATGCATAAGTGTGTAA 59.118 34.615 21.52 13.90 36.03 2.41
3138 8242 6.410540 TGACACCATAATGCATAAGTGTGTA 58.589 36.000 21.52 11.84 36.03 2.90
3139 8243 5.252547 TGACACCATAATGCATAAGTGTGT 58.747 37.500 21.52 20.26 36.03 3.72
3140 8244 5.816449 TGACACCATAATGCATAAGTGTG 57.184 39.130 21.52 17.93 36.03 3.82
3141 8245 5.221106 GCATGACACCATAATGCATAAGTGT 60.221 40.000 18.37 18.37 44.83 3.55
3142 8246 5.217393 GCATGACACCATAATGCATAAGTG 58.783 41.667 0.00 8.12 44.83 3.16
3143 8247 5.443185 GCATGACACCATAATGCATAAGT 57.557 39.130 0.00 0.00 44.83 2.24
3149 8253 3.317149 AGACATGCATGACACCATAATGC 59.683 43.478 32.75 6.91 45.51 3.56
3150 8254 4.337274 ACAGACATGCATGACACCATAATG 59.663 41.667 32.75 19.33 34.60 1.90
3151 8255 4.529897 ACAGACATGCATGACACCATAAT 58.470 39.130 32.75 7.05 0.00 1.28
3152 8256 3.954200 ACAGACATGCATGACACCATAA 58.046 40.909 32.75 0.00 0.00 1.90
3153 8257 3.632643 ACAGACATGCATGACACCATA 57.367 42.857 32.75 0.00 0.00 2.74
3154 8258 2.502142 ACAGACATGCATGACACCAT 57.498 45.000 32.75 9.47 0.00 3.55
3155 8259 3.632643 ATACAGACATGCATGACACCA 57.367 42.857 32.75 14.96 0.00 4.17
3156 8260 4.970662 AAATACAGACATGCATGACACC 57.029 40.909 32.75 17.13 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.