AutoCloner

Multiple sequence alignment - TraesCS2D01G514000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G514000	chr2D	100.000	3381	0	0	1	3381	606092156	606088776	0.000000e+00	6244.0
1	TraesCS2D01G514000	chr2D	95.775	781	31	2	2150	2929	29095006	29094227	0.000000e+00	1258.0
2	TraesCS2D01G514000	chr2D	95.231	629	23	1	487	1115	29096983	29096362	0.000000e+00	989.0
3	TraesCS2D01G514000	chr2D	92.901	493	27	6	2	493	29097504	29097019	0.000000e+00	710.0
4	TraesCS2D01G514000	chr2D	95.302	447	14	2	2935	3381	29090575	29090136	0.000000e+00	702.0
5	TraesCS2D01G514000	chr2D	96.581	117	4	0	2028	2144	29095079	29094963	9.570000e-46	195.0
6	TraesCS2D01G514000	chr6D	97.637	2031	44	2	1	2028	440672612	440674641	0.000000e+00	3482.0
7	TraesCS2D01G514000	chr6D	98.081	1355	18	2	2028	3381	440675484	440676831	0.000000e+00	2351.0
8	TraesCS2D01G514000	chr6D	93.639	393	22	1	93	485	137153310	137152921	4.860000e-163	584.0
9	TraesCS2D01G514000	chr5D	95.669	1547	50	8	487	2030	27280525	27282057	0.000000e+00	2470.0
10	TraesCS2D01G514000	chr5D	94.894	940	43	4	1093	2030	431973345	431974281	0.000000e+00	1465.0
11	TraesCS2D01G514000	chr5D	95.908	782	30	2	2150	2930	431988542	431989322	0.000000e+00	1266.0
12	TraesCS2D01G514000	chr5D	92.474	784	40	16	2150	2927	27284837	27285607	0.000000e+00	1103.0
13	TraesCS2D01G514000	chr5D	91.898	469	31	2	14	481	431972548	431973010	0.000000e+00	649.0
14	TraesCS2D01G514000	chr5D	90.408	490	18	11	1	485	27280021	27280486	4.790000e-173	617.0
15	TraesCS2D01G514000	chr5D	94.352	301	8	2	487	787	431973056	431973347	1.430000e-123	453.0
16	TraesCS2D01G514000	chr5D	95.726	117	5	0	2028	2144	27284764	27284880	4.450000e-44	189.0
17	TraesCS2D01G514000	chr2B	95.613	1550	49	8	487	2030	134341096	134342632	0.000000e+00	2468.0
18	TraesCS2D01G514000	chr2B	96.659	449	13	1	2935	3381	134345171	134345619	0.000000e+00	745.0
19	TraesCS2D01G514000	chr2B	92.661	436	20	5	57	481	134340616	134341050	4.790000e-173	617.0
20	TraesCS2D01G514000	chr2B	95.726	117	5	0	2028	2144	134343604	134343720	4.450000e-44	189.0
21	TraesCS2D01G514000	chr4D	95.287	1549	59	9	487	2030	85853034	85851495	0.000000e+00	2444.0
22	TraesCS2D01G514000	chr4D	89.211	760	52	15	2150	2899	85850448	85849709	0.000000e+00	922.0
23	TraesCS2D01G514000	chr4D	94.650	486	25	1	1	485	85853561	85853076	0.000000e+00	752.0
24	TraesCS2D01G514000	chr4D	96.644	447	13	2	2935	3381	85832610	85832166	0.000000e+00	741.0
25	TraesCS2D01G514000	chr4D	96.364	165	5	1	2767	2930	85849885	85849721	1.550000e-68	270.0
26	TraesCS2D01G514000	chr4D	96.581	117	4	0	2028	2144	85850521	85850405	9.570000e-46	195.0
27	TraesCS2D01G514000	chr4D	95.000	100	3	2	1	98	85854237	85854138	4.520000e-34	156.0
28	TraesCS2D01G514000	chr4A	93.103	1450	62	10	487	1926	658381195	658382616	0.000000e+00	2089.0
29	TraesCS2D01G514000	chr6A	94.773	1167	56	3	721	1883	163168206	163167041	0.000000e+00	1812.0
30	TraesCS2D01G514000	chr7B	96.747	830	25	2	1203	2030	228801064	228801893	0.000000e+00	1382.0
31	TraesCS2D01G514000	chr7B	95.707	792	23	3	2150	2930	228803084	228803875	0.000000e+00	1264.0
32	TraesCS2D01G514000	chr7B	94.567	681	25	2	489	1164	228800394	228801067	0.000000e+00	1042.0
33	TraesCS2D01G514000	chr7B	94.505	455	20	3	1	454	228799861	228800311	0.000000e+00	697.0
34	TraesCS2D01G514000	chr7B	93.860	456	17	4	2935	3381	228807527	228807980	0.000000e+00	676.0
35	TraesCS2D01G514000	chr7B	96.581	117	4	0	2028	2144	228803011	228803127	9.570000e-46	195.0
36	TraesCS2D01G514000	chr7A	95.618	753	29	3	2150	2899	576791853	576791102	0.000000e+00	1205.0
37	TraesCS2D01G514000	chr7A	95.733	750	27	4	2150	2896	658273181	658273928	0.000000e+00	1203.0
38	TraesCS2D01G514000	chr7A	88.378	826	68	17	836	1650	617598489	617599297	0.000000e+00	968.0
39	TraesCS2D01G514000	chr7A	87.995	833	70	15	836	1653	41464795	41463978	0.000000e+00	957.0
40	TraesCS2D01G514000	chr7A	94.340	424	23	1	1	423	658271365	658271788	0.000000e+00	649.0
41	TraesCS2D01G514000	chr7A	93.333	210	4	2	522	731	576793233	576793034	5.480000e-78	302.0
42	TraesCS2D01G514000	chr7A	92.857	210	5	2	522	731	658271801	658272000	2.550000e-76	296.0
43	TraesCS2D01G514000	chr7A	96.552	116	3	1	2028	2143	658273108	658273222	1.240000e-44	191.0
44	TraesCS2D01G514000	chr7A	95.690	116	5	0	2028	2143	576791926	576791811	1.600000e-43	187.0
45	TraesCS2D01G514000	chr2A	95.733	750	28	3	2150	2896	764884020	764884768	0.000000e+00	1205.0
46	TraesCS2D01G514000	chr2A	92.958	426	27	2	1	423	764882212	764882637	4.790000e-173	617.0
47	TraesCS2D01G514000	chr3B	95.089	448	17	4	2935	3381	60395045	60395488	0.000000e+00	701.0
48	TraesCS2D01G514000	chr3B	93.671	316	17	2	2584	2896	60389384	60389699	1.420000e-128	470.0
49	TraesCS2D01G514000	chr3B	96.581	117	4	0	2028	2144	60387738	60387854	9.570000e-46	195.0
50	TraesCS2D01G514000	chr3B	94.030	67	4	0	487	553	769307843	769307777	5.970000e-18	102.0
51	TraesCS2D01G514000	chr3B	92.537	67	5	0	487	553	770356142	770356076	2.780000e-16	97.1
52	TraesCS2D01G514000	chr3D	93.978	465	21	1	809	1266	614089797	614089333	0.000000e+00	697.0
53	TraesCS2D01G514000	chr3D	97.368	76	1	1	1	76	614101758	614101684	9.850000e-26	128.0
54	TraesCS2D01G514000	chr7D	92.132	394	26	3	1642	2030	340173622	340174015	4.930000e-153	551.0
55	TraesCS2D01G514000	chr1B	84.868	456	43	7	2943	3378	549712811	549713260	1.440000e-118	436.0
56	TraesCS2D01G514000	chr5A	84.222	469	40	14	2935	3381	565712217	565711761	3.120000e-115	425.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G514000	chr2D	606088776	606092156	3380	True	6244.000000	6244	100.000000	1	3381	1	chr2D.!!$R1	3380
1	TraesCS2D01G514000	chr2D	29090136	29097504	7368	True	770.800000	1258	95.158000	2	3381	5	chr2D.!!$R2	3379
2	TraesCS2D01G514000	chr6D	440672612	440676831	4219	False	2916.500000	3482	97.859000	1	3381	2	chr6D.!!$F1	3380
3	TraesCS2D01G514000	chr5D	431988542	431989322	780	False	1266.000000	1266	95.908000	2150	2930	1	chr5D.!!$F1	780
4	TraesCS2D01G514000	chr5D	27280021	27285607	5586	False	1094.750000	2470	93.569250	1	2927	4	chr5D.!!$F2	2926
5	TraesCS2D01G514000	chr5D	431972548	431974281	1733	False	855.666667	1465	93.714667	14	2030	3	chr5D.!!$F3	2016
6	TraesCS2D01G514000	chr2B	134340616	134345619	5003	False	1004.750000	2468	95.164750	57	3381	4	chr2B.!!$F1	3324
7	TraesCS2D01G514000	chr4D	85849709	85854237	4528	True	789.833333	2444	94.515500	1	2930	6	chr4D.!!$R2	2929
8	TraesCS2D01G514000	chr4A	658381195	658382616	1421	False	2089.000000	2089	93.103000	487	1926	1	chr4A.!!$F1	1439
9	TraesCS2D01G514000	chr6A	163167041	163168206	1165	True	1812.000000	1812	94.773000	721	1883	1	chr6A.!!$R1	1162
10	TraesCS2D01G514000	chr7B	228799861	228807980	8119	False	876.000000	1382	95.327833	1	3381	6	chr7B.!!$F1	3380
11	TraesCS2D01G514000	chr7A	617598489	617599297	808	False	968.000000	968	88.378000	836	1650	1	chr7A.!!$F1	814
12	TraesCS2D01G514000	chr7A	41463978	41464795	817	True	957.000000	957	87.995000	836	1653	1	chr7A.!!$R1	817
13	TraesCS2D01G514000	chr7A	658271365	658273928	2563	False	584.750000	1203	94.870500	1	2896	4	chr7A.!!$F2	2895
14	TraesCS2D01G514000	chr7A	576791102	576793233	2131	True	564.666667	1205	94.880333	522	2899	3	chr7A.!!$R2	2377
15	TraesCS2D01G514000	chr2A	764882212	764884768	2556	False	911.000000	1205	94.345500	1	2896	2	chr2A.!!$F1	2895
16	TraesCS2D01G514000	chr3B	60387738	60389699	1961	False	332.500000	470	95.126000	2028	2896	2	chr3B.!!$F2	868

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
761	1514	0.532862	CACGAGCTTTCCACAGTGGT	60.533	55.000	19.65	0.0	39.03	4.16	F
2104	5822	1.068741	CCGTACATCCTAGCCAACTCC	59.931	57.143	0.00	0.0	0.00	3.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2106	5824	0.528684	GTAGCTCACCATCACTCCGC	60.529	60.0	0.0	0.0	0.0	5.54	R
3326	13394	5.643777	GTCTGCCTCATAGTTAATTGTGTGT	59.356	40.0	0.0	0.0	0.0	3.72	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
164	851	1.269831	CGAAGCAGCAGGGTAGGATAC	60.270	57.143	0.00	0.00	42.04	2.24
481	1184	2.358247	GTTCGGCCGTGGTGTCAT	60.358	61.111	27.15	0.00	0.00	3.06
761	1514	0.532862	CACGAGCTTTCCACAGTGGT	60.533	55.000	19.65	0.00	39.03	4.16
765	1518	2.508526	GAGCTTTCCACAGTGGTCATT	58.491	47.619	19.65	3.01	39.03	2.57
943	1703	4.911514	TTTTTAGATTGATAAGGGCCGC	57.088	40.909	0.00	0.00	0.00	6.53
1267	2089	6.492007	TCTCTCACATGCTTGAAGATTTTC	57.508	37.500	6.60	0.00	0.00	2.29
1575	2403	6.730447	TCATGATTTGATTGAGGGGAAAGTA	58.270	36.000	0.00	0.00	0.00	2.24
1614	2442	7.015292	TCTGGTATCCCAAGTGTAATATCAGTC	59.985	40.741	0.00	0.00	41.27	3.51
1622	2450	6.986231	CCAAGTGTAATATCAGTCTATGCACA	59.014	38.462	0.00	0.00	0.00	4.57
1704	2532	5.392057	GCTCACTAAGTGGAAATTTGCTACC	60.392	44.000	11.22	0.00	33.87	3.18
1744	2572	5.628134	ACGAAAGTGACAGTTTTCAGAAAC	58.372	37.500	9.59	0.00	46.97	2.78
2087	5805	2.494918	GCGTGCTGATCCTACCGT	59.505	61.111	0.00	0.00	0.00	4.83
2100	5818	2.091720	TCCTACCGTACATCCTAGCCAA	60.092	50.000	0.00	0.00	0.00	4.52
2101	5819	2.035576	CCTACCGTACATCCTAGCCAAC	59.964	54.545	0.00	0.00	0.00	3.77
2102	5820	1.861982	ACCGTACATCCTAGCCAACT	58.138	50.000	0.00	0.00	0.00	3.16
2103	5821	1.755380	ACCGTACATCCTAGCCAACTC	59.245	52.381	0.00	0.00	0.00	3.01
2104	5822	1.068741	CCGTACATCCTAGCCAACTCC	59.931	57.143	0.00	0.00	0.00	3.85
2105	5823	1.269102	CGTACATCCTAGCCAACTCCG	60.269	57.143	0.00	0.00	0.00	4.63
2106	5824	1.068741	GTACATCCTAGCCAACTCCGG	59.931	57.143	0.00	0.00	0.00	5.14
2118	5836	3.461773	CTCCGGCGGAGTGATGGT	61.462	66.667	40.56	0.00	44.25	3.55
2119	5837	3.723235	CTCCGGCGGAGTGATGGTG	62.723	68.421	40.56	19.30	44.25	4.17
2120	5838	3.770040	CCGGCGGAGTGATGGTGA	61.770	66.667	24.41	0.00	0.00	4.02
2121	5839	2.202797	CGGCGGAGTGATGGTGAG	60.203	66.667	0.00	0.00	0.00	3.51
2122	5840	2.512515	GGCGGAGTGATGGTGAGC	60.513	66.667	0.00	0.00	0.00	4.26
2123	5841	2.581354	GCGGAGTGATGGTGAGCT	59.419	61.111	0.00	0.00	0.00	4.09
2124	5842	1.676678	GGCGGAGTGATGGTGAGCTA	61.677	60.000	0.00	0.00	0.00	3.32
2125	5843	0.528684	GCGGAGTGATGGTGAGCTAC	60.529	60.000	0.00	0.00	0.00	3.58
2126	5844	1.107114	CGGAGTGATGGTGAGCTACT	58.893	55.000	0.00	0.00	0.00	2.57
2127	5845	1.478510	CGGAGTGATGGTGAGCTACTT	59.521	52.381	0.00	0.00	0.00	2.24
2128	5846	2.480416	CGGAGTGATGGTGAGCTACTTC	60.480	54.545	0.00	0.00	0.00	3.01
2129	5847	2.497675	GGAGTGATGGTGAGCTACTTCA	59.502	50.000	0.00	0.00	0.00	3.02
2130	5848	3.055819	GGAGTGATGGTGAGCTACTTCAA	60.056	47.826	0.00	0.00	0.00	2.69
2131	5849	4.180057	GAGTGATGGTGAGCTACTTCAAG	58.820	47.826	0.00	0.00	0.00	3.02
2132	5850	3.580458	AGTGATGGTGAGCTACTTCAAGT	59.420	43.478	0.00	0.00	0.00	3.16
2133	5851	3.681897	GTGATGGTGAGCTACTTCAAGTG	59.318	47.826	0.00	0.00	0.00	3.16
2134	5852	2.839486	TGGTGAGCTACTTCAAGTGG	57.161	50.000	0.00	0.00	0.00	4.00
2135	5853	1.347707	TGGTGAGCTACTTCAAGTGGG	59.652	52.381	0.00	0.00	0.00	4.61
2136	5854	1.348036	GGTGAGCTACTTCAAGTGGGT	59.652	52.381	5.13	5.13	40.15	4.51
2137	5855	2.417719	GTGAGCTACTTCAAGTGGGTG	58.582	52.381	10.72	0.00	37.55	4.61
2138	5856	1.270839	TGAGCTACTTCAAGTGGGTGC	60.271	52.381	10.72	4.63	37.55	5.01
2139	5857	0.764890	AGCTACTTCAAGTGGGTGCA	59.235	50.000	4.60	0.00	36.07	4.57
2140	5858	1.160137	GCTACTTCAAGTGGGTGCAG	58.840	55.000	0.00	0.00	0.00	4.41
2141	5859	1.270839	GCTACTTCAAGTGGGTGCAGA	60.271	52.381	0.00	0.00	0.00	4.26
2142	5860	2.810400	GCTACTTCAAGTGGGTGCAGAA	60.810	50.000	0.00	0.00	0.00	3.02
2143	5861	1.680338	ACTTCAAGTGGGTGCAGAAC	58.320	50.000	0.00	0.00	0.00	3.01
2702	8571	3.627237	GGGGGCATACTGGAGATTTTCAA	60.627	47.826	0.00	0.00	0.00	2.69
2771	8640	0.321671	TTGTGTGCTACTCCCTCTGC	59.678	55.000	0.00	0.00	0.00	4.26
2778	8647	0.958091	CTACTCCCTCTGCTCCATCG	59.042	60.000	0.00	0.00	0.00	3.84
2780	8649	0.105760	ACTCCCTCTGCTCCATCGAT	60.106	55.000	0.00	0.00	0.00	3.59
2782	8651	1.000731	CTCCCTCTGCTCCATCGATTC	59.999	57.143	0.00	0.00	0.00	2.52
2783	8652	0.755079	CCCTCTGCTCCATCGATTCA	59.245	55.000	0.00	0.00	0.00	2.57
2784	8653	1.539929	CCCTCTGCTCCATCGATTCAC	60.540	57.143	0.00	0.00	0.00	3.18
2785	8654	1.137675	CCTCTGCTCCATCGATTCACA	59.862	52.381	0.00	0.00	0.00	3.58

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
476	1179	1.040646	GCGACCTCCTATCCATGACA	58.959	55.000	0.00	0.00	0.00	3.58
481	1184	3.224324	GCGGCGACCTCCTATCCA	61.224	66.667	12.98	0.00	0.00	3.41
765	1518	8.564574	ACGAAGCAACATTCAGAATTTAGTTAA	58.435	29.630	0.00	0.00	0.00	2.01
924	1684	3.476552	CTGCGGCCCTTATCAATCTAAA	58.523	45.455	0.00	0.00	0.00	1.85
943	1703	6.364706	GGATAGTAGATTCGTCATTGAAGCTG	59.635	42.308	4.66	0.00	43.83	4.24
1241	2063	3.268330	TCTTCAAGCATGTGAGAGATGC	58.732	45.455	0.00	0.00	45.56	3.91
1267	2089	2.484264	GGTTGAGGTCGGTTTCATCTTG	59.516	50.000	0.00	0.00	0.00	3.02
1744	2572	5.683876	TGTTCTTCCCTCCATCTAAAGAG	57.316	43.478	0.00	0.00	0.00	2.85
1746	2574	6.889198	TGTATGTTCTTCCCTCCATCTAAAG	58.111	40.000	0.00	0.00	0.00	1.85
2007	2837	9.134734	CTTCTCTTAGTGAGTTCAGATAAACAC	57.865	37.037	0.00	0.00	43.13	3.32
2087	5805	1.410004	CCGGAGTTGGCTAGGATGTA	58.590	55.000	0.00	0.00	0.00	2.29
2102	5820	3.770040	CACCATCACTCCGCCGGA	61.770	66.667	5.05	5.37	0.00	5.14
2103	5821	3.723235	CTCACCATCACTCCGCCGG	62.723	68.421	0.00	0.00	0.00	6.13
2104	5822	2.202797	CTCACCATCACTCCGCCG	60.203	66.667	0.00	0.00	0.00	6.46
2105	5823	1.676678	TAGCTCACCATCACTCCGCC	61.677	60.000	0.00	0.00	0.00	6.13
2106	5824	0.528684	GTAGCTCACCATCACTCCGC	60.529	60.000	0.00	0.00	0.00	5.54
2107	5825	1.107114	AGTAGCTCACCATCACTCCG	58.893	55.000	0.00	0.00	0.00	4.63
2108	5826	2.497675	TGAAGTAGCTCACCATCACTCC	59.502	50.000	0.00	0.00	0.00	3.85
2109	5827	3.876274	TGAAGTAGCTCACCATCACTC	57.124	47.619	0.00	0.00	0.00	3.51
2110	5828	3.580458	ACTTGAAGTAGCTCACCATCACT	59.420	43.478	0.00	0.00	0.00	3.41
2111	5829	3.681897	CACTTGAAGTAGCTCACCATCAC	59.318	47.826	0.00	0.00	0.00	3.06
2112	5830	3.306989	CCACTTGAAGTAGCTCACCATCA	60.307	47.826	0.00	0.00	0.00	3.07
2113	5831	3.265791	CCACTTGAAGTAGCTCACCATC	58.734	50.000	0.00	0.00	0.00	3.51
2114	5832	2.026822	CCCACTTGAAGTAGCTCACCAT	60.027	50.000	0.00	0.00	0.00	3.55
2115	5833	1.347707	CCCACTTGAAGTAGCTCACCA	59.652	52.381	0.00	0.00	0.00	4.17
2116	5834	1.348036	ACCCACTTGAAGTAGCTCACC	59.652	52.381	0.00	0.00	0.00	4.02
2117	5835	2.417719	CACCCACTTGAAGTAGCTCAC	58.582	52.381	0.00	0.00	0.00	3.51
2118	5836	1.270839	GCACCCACTTGAAGTAGCTCA	60.271	52.381	0.00	0.00	0.00	4.26
2119	5837	1.270839	TGCACCCACTTGAAGTAGCTC	60.271	52.381	0.00	0.00	0.00	4.09
2120	5838	0.764890	TGCACCCACTTGAAGTAGCT	59.235	50.000	0.00	0.00	0.00	3.32
2121	5839	1.160137	CTGCACCCACTTGAAGTAGC	58.840	55.000	0.00	1.03	0.00	3.58
2122	5840	2.808543	GTTCTGCACCCACTTGAAGTAG	59.191	50.000	0.00	0.00	0.00	2.57
2123	5841	2.486548	GGTTCTGCACCCACTTGAAGTA	60.487	50.000	0.00	0.00	40.19	2.24
2124	5842	1.680338	GTTCTGCACCCACTTGAAGT	58.320	50.000	0.00	0.00	0.00	3.01
2125	5843	0.954452	GGTTCTGCACCCACTTGAAG	59.046	55.000	0.00	0.00	40.19	3.02
2126	5844	3.109847	GGTTCTGCACCCACTTGAA	57.890	52.632	0.00	0.00	40.19	2.69
2127	5845	4.898607	GGTTCTGCACCCACTTGA	57.101	55.556	0.00	0.00	40.19	3.02
2134	5852	1.003233	GAGTGAGGGGTTCTGCACC	60.003	63.158	0.00	0.00	46.46	5.01
2135	5853	1.003233	GGAGTGAGGGGTTCTGCAC	60.003	63.158	0.00	0.00	0.00	4.57
2136	5854	2.583441	CGGAGTGAGGGGTTCTGCA	61.583	63.158	0.00	0.00	0.00	4.41
2137	5855	2.266055	CGGAGTGAGGGGTTCTGC	59.734	66.667	0.00	0.00	0.00	4.26
2138	5856	2.982130	CCGGAGTGAGGGGTTCTG	59.018	66.667	0.00	0.00	0.00	3.02
2139	5857	3.003763	GCCGGAGTGAGGGGTTCT	61.004	66.667	5.05	0.00	0.00	3.01
2140	5858	4.452733	CGCCGGAGTGAGGGGTTC	62.453	72.222	5.05	0.00	37.00	3.62
2570	7280	6.325028	TGCTGTGATCCTCTAGCTAGTTTTAT	59.675	38.462	20.10	9.87	37.10	1.40
2771	8640	8.768957	ACATCTTATATTGTGAATCGATGGAG	57.231	34.615	0.00	0.00	33.27	3.86
3326	13394	5.643777	GTCTGCCTCATAGTTAATTGTGTGT	59.356	40.000	0.00	0.00	0.00	3.72

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.