Multiple sequence alignment - TraesCS2D01G513500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G513500 chr2D 100.000 5434 0 0 1 5434 605366756 605372189 0.000000e+00 10035.0
1 TraesCS2D01G513500 chr2D 85.460 1293 158 16 3357 4647 506789632 506790896 0.000000e+00 1319.0
2 TraesCS2D01G513500 chr2D 82.495 914 107 30 4000 4896 605579039 605579916 0.000000e+00 752.0
3 TraesCS2D01G513500 chr2D 81.140 912 112 33 4000 4896 605464078 605464944 0.000000e+00 676.0
4 TraesCS2D01G513500 chr2D 87.154 506 48 6 2064 2564 87074813 87074320 4.750000e-155 558.0
5 TraesCS2D01G513500 chr2D 76.398 1216 178 63 1882 3057 506788128 506789274 6.150000e-154 555.0
6 TraesCS2D01G513500 chr2D 78.891 559 90 20 4 546 632462176 632461630 2.410000e-93 353.0
7 TraesCS2D01G513500 chr2D 94.872 117 6 0 5206 5322 441576673 441576789 3.340000e-42 183.0
8 TraesCS2D01G513500 chr2B 94.330 3263 132 28 1679 4929 735518498 735521719 0.000000e+00 4951.0
9 TraesCS2D01G513500 chr2B 81.995 1544 216 25 3118 4647 594843604 594845099 0.000000e+00 1254.0
10 TraesCS2D01G513500 chr2B 92.420 686 31 6 686 1364 735517337 735518008 0.000000e+00 959.0
11 TraesCS2D01G513500 chr2B 88.033 610 38 8 1 597 735516718 735517305 0.000000e+00 689.0
12 TraesCS2D01G513500 chr2B 83.925 535 38 11 1939 2469 138538288 138537798 8.240000e-128 468.0
13 TraesCS2D01G513500 chr2B 76.914 888 143 36 2181 3052 594842610 594843451 1.070000e-121 448.0
14 TraesCS2D01G513500 chr2B 91.518 224 12 1 1362 1578 735518279 735518502 8.850000e-78 302.0
15 TraesCS2D01G513500 chr2B 92.308 143 10 1 5036 5177 735525041 735525183 9.230000e-48 202.0
16 TraesCS2D01G513500 chr2B 83.838 198 23 5 4000 4197 736101802 736101990 4.320000e-41 180.0
17 TraesCS2D01G513500 chr2B 88.182 110 10 2 5326 5434 735525743 735525850 1.590000e-25 128.0
18 TraesCS2D01G513500 chr2B 98.113 53 1 0 4949 5001 735521716 735521768 5.800000e-15 93.5
19 TraesCS2D01G513500 chr2B 100.000 33 0 0 1865 1897 735518947 735518979 1.630000e-05 62.1
20 TraesCS2D01G513500 chr2A 95.474 1900 54 14 3159 5036 736548069 736549958 0.000000e+00 3003.0
21 TraesCS2D01G513500 chr2A 93.113 1481 73 9 1679 3156 736546432 736547886 0.000000e+00 2143.0
22 TraesCS2D01G513500 chr2A 82.311 1549 208 29 3118 4647 651606658 651608159 0.000000e+00 1282.0
23 TraesCS2D01G513500 chr2A 95.301 532 24 1 1047 1578 736545906 736546436 0.000000e+00 843.0
24 TraesCS2D01G513500 chr2A 80.681 911 126 30 4000 4896 736752665 736753539 0.000000e+00 662.0
25 TraesCS2D01G513500 chr2A 75.802 686 104 36 1886 2546 651605514 651606162 1.910000e-74 291.0
26 TraesCS2D01G513500 chr2A 80.348 402 59 13 4157 4544 736751792 736752187 2.480000e-73 287.0
27 TraesCS2D01G513500 chr2A 96.748 123 4 0 5028 5150 736550243 736550365 7.130000e-49 206.0
28 TraesCS2D01G513500 chr2A 95.161 124 6 0 1566 1689 1902380 1902503 4.290000e-46 196.0
29 TraesCS2D01G513500 chr2A 95.726 117 5 0 5206 5322 645315985 645315869 7.190000e-44 189.0
30 TraesCS2D01G513500 chr2A 85.227 88 13 0 1779 1866 736546756 736546843 2.080000e-14 91.6
31 TraesCS2D01G513500 chr2A 96.154 52 2 0 916 967 736545572 736545623 9.700000e-13 86.1
32 TraesCS2D01G513500 chr4D 86.759 506 50 4 2064 2564 352313391 352312898 1.030000e-151 547.0
33 TraesCS2D01G513500 chr1B 87.423 485 47 5 2114 2590 672366566 672366088 3.700000e-151 545.0
34 TraesCS2D01G513500 chr1B 87.600 250 25 5 2583 2827 672366046 672365798 8.910000e-73 285.0
35 TraesCS2D01G513500 chr1B 88.079 151 13 5 1535 1682 612936657 612936509 2.010000e-39 174.0
36 TraesCS2D01G513500 chr3A 86.481 503 51 6 2064 2561 123526032 123526522 2.230000e-148 536.0
37 TraesCS2D01G513500 chr5A 84.387 506 61 7 2064 2564 130990480 130989988 1.060000e-131 481.0
38 TraesCS2D01G513500 chr1D 84.595 370 40 4 2064 2428 168750372 168750015 8.660000e-93 351.0
39 TraesCS2D01G513500 chr1D 77.658 555 88 22 1 535 465980410 465980948 6.840000e-79 305.0
40 TraesCS2D01G513500 chr7B 77.957 558 86 25 4 544 708101284 708100747 1.140000e-81 315.0
41 TraesCS2D01G513500 chr7B 94.400 125 6 1 1559 1682 708469463 708469587 2.000000e-44 191.0
42 TraesCS2D01G513500 chr3D 79.610 461 71 19 58 510 450236647 450237092 5.290000e-80 309.0
43 TraesCS2D01G513500 chr3D 76.533 473 85 19 4 469 613432771 613432318 9.100000e-58 235.0
44 TraesCS2D01G513500 chr3D 75.681 514 95 23 16 510 24755669 24756171 4.230000e-56 230.0
45 TraesCS2D01G513500 chr3D 94.309 123 7 0 5200 5322 337959631 337959509 7.190000e-44 189.0
46 TraesCS2D01G513500 chr3D 93.701 127 7 1 1560 1686 357639317 357639192 7.190000e-44 189.0
47 TraesCS2D01G513500 chr6D 97.561 123 2 1 1572 1694 3196378 3196499 5.520000e-50 209.0
48 TraesCS2D01G513500 chr6D 95.726 117 5 0 5206 5322 348647454 348647338 7.190000e-44 189.0
49 TraesCS2D01G513500 chrUn 75.450 444 87 18 89 526 344006922 344006495 4.290000e-46 196.0
50 TraesCS2D01G513500 chrUn 75.450 444 87 18 89 526 344048391 344047964 4.290000e-46 196.0
51 TraesCS2D01G513500 chr6B 96.581 117 4 0 1571 1687 20752608 20752492 1.540000e-45 195.0
52 TraesCS2D01G513500 chr6B 93.023 129 9 0 5198 5326 256326819 256326691 7.190000e-44 189.0
53 TraesCS2D01G513500 chr5D 94.444 126 6 1 1574 1698 532242611 532242486 5.550000e-45 193.0
54 TraesCS2D01G513500 chr5D 94.915 118 6 0 5205 5322 498400299 498400416 9.290000e-43 185.0
55 TraesCS2D01G513500 chr3B 99.065 107 1 0 1576 1682 526281117 526281011 5.550000e-45 193.0
56 TraesCS2D01G513500 chr3B 92.537 134 6 3 1569 1702 84898675 84898804 7.190000e-44 189.0
57 TraesCS2D01G513500 chr3B 94.915 118 6 0 5206 5323 426998973 426998856 9.290000e-43 185.0
58 TraesCS2D01G513500 chr7A 94.915 118 4 2 5206 5322 214220790 214220674 3.340000e-42 183.0
59 TraesCS2D01G513500 chr4B 91.406 128 11 0 5196 5323 613958813 613958686 5.590000e-40 176.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G513500 chr2D 605366756 605372189 5433 False 10035.000000 10035 100.0000 1 5434 1 chr2D.!!$F2 5433
1 TraesCS2D01G513500 chr2D 506788128 506790896 2768 False 937.000000 1319 80.9290 1882 4647 2 chr2D.!!$F5 2765
2 TraesCS2D01G513500 chr2D 605579039 605579916 877 False 752.000000 752 82.4950 4000 4896 1 chr2D.!!$F4 896
3 TraesCS2D01G513500 chr2D 605464078 605464944 866 False 676.000000 676 81.1400 4000 4896 1 chr2D.!!$F3 896
4 TraesCS2D01G513500 chr2D 632461630 632462176 546 True 353.000000 353 78.8910 4 546 1 chr2D.!!$R2 542
5 TraesCS2D01G513500 chr2B 735516718 735525850 9132 False 923.325000 4951 93.1130 1 5434 8 chr2B.!!$F3 5433
6 TraesCS2D01G513500 chr2B 594842610 594845099 2489 False 851.000000 1254 79.4545 2181 4647 2 chr2B.!!$F2 2466
7 TraesCS2D01G513500 chr2A 736545572 736550365 4793 False 1062.116667 3003 93.6695 916 5150 6 chr2A.!!$F3 4234
8 TraesCS2D01G513500 chr2A 651605514 651608159 2645 False 786.500000 1282 79.0565 1886 4647 2 chr2A.!!$F2 2761
9 TraesCS2D01G513500 chr2A 736751792 736753539 1747 False 474.500000 662 80.5145 4000 4896 2 chr2A.!!$F4 896
10 TraesCS2D01G513500 chr1B 672365798 672366566 768 True 415.000000 545 87.5115 2114 2827 2 chr1B.!!$R2 713
11 TraesCS2D01G513500 chr1D 465980410 465980948 538 False 305.000000 305 77.6580 1 535 1 chr1D.!!$F1 534
12 TraesCS2D01G513500 chr7B 708100747 708101284 537 True 315.000000 315 77.9570 4 544 1 chr7B.!!$R1 540
13 TraesCS2D01G513500 chr3D 24755669 24756171 502 False 230.000000 230 75.6810 16 510 1 chr3D.!!$F1 494

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
646 678 0.034089 CCCAATTCCCGCCTCTTCTT 60.034 55.0 0.00 0.00 0.00 2.52 F
1591 2107 0.038744 AAGTACTCCCTCCGTTCGGA 59.961 55.0 13.34 13.34 0.00 4.55 F
1597 2113 0.038744 TCCCTCCGTTCGGACTTACT 59.961 55.0 10.00 0.00 0.00 2.24 F
1604 2120 0.706729 GTTCGGACTTACTTGTCGCG 59.293 55.0 0.00 0.00 37.81 5.87 F
1683 2199 0.038744 TTCCGAACGGAGGGAGTACT 59.961 55.0 15.34 0.00 46.06 2.73 F
3632 4543 0.457509 CGCAAATAAATGGCGGTGCA 60.458 50.0 0.00 0.00 46.46 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1578 2094 0.038744 AGTAAGTCCGAACGGAGGGA 59.961 55.000 16.35 1.82 46.16 4.20 R
3488 4399 0.900421 TCCTGCACATCAGACAGAGG 59.100 55.000 0.00 0.00 45.72 3.69 R
3632 4543 4.348020 TCCTCCCACTATTACACCTTCT 57.652 45.455 0.00 0.00 0.00 2.85 R
3647 4558 1.003696 CCTTCTCCTGTTGTTCCTCCC 59.996 57.143 0.00 0.00 0.00 4.30 R
4040 4951 4.759693 CCGCTCCATATTGTTATGCCTTTA 59.240 41.667 0.00 0.00 34.94 1.85 R
4792 5757 0.325110 TCCAAGCCTAGCTCAGCTCT 60.325 55.000 0.00 0.00 38.25 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
343 374 4.577152 CCAAACTGGGTCACTGCA 57.423 55.556 0.00 0.00 32.67 4.41
416 448 3.784429 CCAAGTGGGGGAATTTCCA 57.216 52.632 17.08 0.00 38.64 3.53
425 457 3.106827 GGGGGAATTTCCATGTGTGAAT 58.893 45.455 17.08 0.00 38.64 2.57
471 503 5.366186 TGGCATTGATGGGTAATATTTTGCT 59.634 36.000 0.00 0.00 0.00 3.91
575 607 5.921408 AGATTTCGGATATTTGAGTAGTCGC 59.079 40.000 0.00 0.00 0.00 5.19
583 615 4.946784 ATTTGAGTAGTCGCCAACATTC 57.053 40.909 0.00 0.00 0.00 2.67
597 629 6.204688 TCGCCAACATTCCTTTGCTAATATAG 59.795 38.462 0.00 0.00 0.00 1.31
623 655 5.360591 AGATTAAAGCTATGAAGGTCCGTG 58.639 41.667 0.00 0.00 31.54 4.94
624 656 4.811969 TTAAAGCTATGAAGGTCCGTGA 57.188 40.909 0.00 0.00 31.54 4.35
626 658 2.674796 AGCTATGAAGGTCCGTGAAC 57.325 50.000 0.00 0.00 0.00 3.18
627 659 1.207329 AGCTATGAAGGTCCGTGAACC 59.793 52.381 0.00 0.00 39.80 3.62
628 660 1.742750 GCTATGAAGGTCCGTGAACCC 60.743 57.143 0.00 0.00 40.42 4.11
629 661 0.906775 TATGAAGGTCCGTGAACCCC 59.093 55.000 0.00 0.00 40.42 4.95
631 663 1.346479 TGAAGGTCCGTGAACCCCAA 61.346 55.000 0.00 0.00 40.42 4.12
632 664 0.037734 GAAGGTCCGTGAACCCCAAT 59.962 55.000 0.00 0.00 40.42 3.16
633 665 0.481128 AAGGTCCGTGAACCCCAATT 59.519 50.000 0.00 0.00 40.42 2.32
634 666 0.037734 AGGTCCGTGAACCCCAATTC 59.962 55.000 0.00 0.00 40.42 2.17
635 667 0.963856 GGTCCGTGAACCCCAATTCC 60.964 60.000 0.00 0.00 32.82 3.01
636 668 0.963856 GTCCGTGAACCCCAATTCCC 60.964 60.000 0.00 0.00 0.00 3.97
637 669 2.043980 CCGTGAACCCCAATTCCCG 61.044 63.158 0.00 0.00 30.41 5.14
640 672 2.359011 GAACCCCAATTCCCGCCT 59.641 61.111 0.00 0.00 0.00 5.52
642 674 2.211468 GAACCCCAATTCCCGCCTCT 62.211 60.000 0.00 0.00 0.00 3.69
643 675 1.800229 AACCCCAATTCCCGCCTCTT 61.800 55.000 0.00 0.00 0.00 2.85
644 676 1.453928 CCCCAATTCCCGCCTCTTC 60.454 63.158 0.00 0.00 0.00 2.87
645 677 1.609783 CCCAATTCCCGCCTCTTCT 59.390 57.895 0.00 0.00 0.00 2.85
646 678 0.034089 CCCAATTCCCGCCTCTTCTT 60.034 55.000 0.00 0.00 0.00 2.52
647 679 1.383523 CCAATTCCCGCCTCTTCTTC 58.616 55.000 0.00 0.00 0.00 2.87
649 681 0.107654 AATTCCCGCCTCTTCTTCGG 60.108 55.000 0.00 0.00 42.58 4.30
650 682 2.595009 ATTCCCGCCTCTTCTTCGGC 62.595 60.000 0.00 0.00 41.68 5.54
651 683 4.082523 CCCGCCTCTTCTTCGGCA 62.083 66.667 0.00 0.00 46.62 5.69
652 684 2.187946 CCGCCTCTTCTTCGGCAT 59.812 61.111 0.00 0.00 46.62 4.40
653 685 1.884926 CCGCCTCTTCTTCGGCATC 60.885 63.158 0.00 0.00 46.62 3.91
654 686 1.142748 CGCCTCTTCTTCGGCATCT 59.857 57.895 0.00 0.00 46.62 2.90
655 687 0.460987 CGCCTCTTCTTCGGCATCTT 60.461 55.000 0.00 0.00 46.62 2.40
656 688 1.294857 GCCTCTTCTTCGGCATCTTC 58.705 55.000 0.00 0.00 45.59 2.87
657 689 1.134551 GCCTCTTCTTCGGCATCTTCT 60.135 52.381 0.00 0.00 45.59 2.85
658 690 2.679349 GCCTCTTCTTCGGCATCTTCTT 60.679 50.000 0.00 0.00 45.59 2.52
660 692 3.368843 CCTCTTCTTCGGCATCTTCTTGA 60.369 47.826 0.00 0.00 0.00 3.02
661 693 4.440880 CTCTTCTTCGGCATCTTCTTGAT 58.559 43.478 0.00 0.00 35.40 2.57
662 694 5.452496 CCTCTTCTTCGGCATCTTCTTGATA 60.452 44.000 0.00 0.00 33.36 2.15
663 695 5.595885 TCTTCTTCGGCATCTTCTTGATAG 58.404 41.667 0.00 0.00 33.36 2.08
664 696 4.327982 TCTTCGGCATCTTCTTGATAGG 57.672 45.455 0.00 0.00 33.36 2.57
666 698 4.893524 TCTTCGGCATCTTCTTGATAGGTA 59.106 41.667 0.00 0.00 33.36 3.08
667 699 5.362717 TCTTCGGCATCTTCTTGATAGGTAA 59.637 40.000 0.00 0.00 33.36 2.85
669 701 5.357257 TCGGCATCTTCTTGATAGGTAAAC 58.643 41.667 0.00 0.00 33.36 2.01
670 702 5.128827 TCGGCATCTTCTTGATAGGTAAACT 59.871 40.000 0.00 0.00 33.36 2.66
671 703 5.463724 CGGCATCTTCTTGATAGGTAAACTC 59.536 44.000 0.00 0.00 33.36 3.01
672 704 6.349300 GGCATCTTCTTGATAGGTAAACTCA 58.651 40.000 0.00 0.00 33.36 3.41
673 705 6.823689 GGCATCTTCTTGATAGGTAAACTCAA 59.176 38.462 0.00 0.00 33.36 3.02
674 706 7.011857 GGCATCTTCTTGATAGGTAAACTCAAG 59.988 40.741 5.40 5.40 44.59 3.02
680 712 7.835634 CTTGATAGGTAAACTCAAGAAGGTC 57.164 40.000 5.78 0.00 45.57 3.85
681 713 6.295719 TGATAGGTAAACTCAAGAAGGTCC 57.704 41.667 0.00 0.00 0.00 4.46
682 714 5.189145 TGATAGGTAAACTCAAGAAGGTCCC 59.811 44.000 0.00 0.00 0.00 4.46
684 716 3.916989 AGGTAAACTCAAGAAGGTCCCAT 59.083 43.478 0.00 0.00 0.00 4.00
737 769 4.441079 GGGCCATTTGAATGATGAAGTCTG 60.441 45.833 4.39 0.00 38.70 3.51
738 770 4.400251 GGCCATTTGAATGATGAAGTCTGA 59.600 41.667 0.00 0.00 38.70 3.27
784 817 6.431234 CCTATGTTCATATGGGCTAAAACTCC 59.569 42.308 2.13 0.00 0.00 3.85
882 915 0.397941 CCAAAGTCCAGGCTCACTCA 59.602 55.000 0.00 0.00 0.00 3.41
884 917 2.354259 CAAAGTCCAGGCTCACTCATC 58.646 52.381 0.00 0.00 0.00 2.92
900 933 1.275856 TCATCCAGGCACCAATTTTGC 59.724 47.619 0.77 0.77 39.41 3.68
935 968 4.202738 ACCAAACTAAAGCCCTAAATCCCA 60.203 41.667 0.00 0.00 0.00 4.37
1172 1408 2.224354 GGTACGAGGTTGTTTCCTTCCA 60.224 50.000 0.00 0.00 38.02 3.53
1357 1593 6.125029 AGTCATTGAGATTGGGTGAAATAGG 58.875 40.000 0.00 0.00 0.00 2.57
1423 1932 7.400052 ACTGTATTTAATTGGGAGCCTGAAATT 59.600 33.333 0.00 0.00 0.00 1.82
1435 1944 5.998363 GGAGCCTGAAATTAAGGATAACGAT 59.002 40.000 0.00 0.00 36.91 3.73
1454 1963 2.450609 TGACCCGTCTTTGCTCTTAC 57.549 50.000 0.00 0.00 0.00 2.34
1457 1966 2.494870 GACCCGTCTTTGCTCTTACCTA 59.505 50.000 0.00 0.00 0.00 3.08
1458 1967 2.901839 ACCCGTCTTTGCTCTTACCTAA 59.098 45.455 0.00 0.00 0.00 2.69
1476 1985 5.264395 ACCTAAGATTAGTTGGCAGCAAAT 58.736 37.500 3.63 0.00 0.00 2.32
1477 1986 6.423182 ACCTAAGATTAGTTGGCAGCAAATA 58.577 36.000 3.63 0.00 0.00 1.40
1539 2055 7.432545 GTGAAGGTTGCTTCTCTTTTTCTAAAC 59.567 37.037 0.00 0.00 34.64 2.01
1543 2059 9.185680 AGGTTGCTTCTCTTTTTCTAAACTAAA 57.814 29.630 0.00 0.00 0.00 1.85
1578 2094 5.986501 AGACTAGCAACTTAGCAAGTACT 57.013 39.130 0.00 0.00 41.91 2.73
1579 2095 5.956642 AGACTAGCAACTTAGCAAGTACTC 58.043 41.667 0.00 0.00 41.91 2.59
1580 2096 5.074584 ACTAGCAACTTAGCAAGTACTCC 57.925 43.478 0.00 0.00 41.91 3.85
1581 2097 3.336138 AGCAACTTAGCAAGTACTCCC 57.664 47.619 0.00 0.00 41.91 4.30
1582 2098 2.907042 AGCAACTTAGCAAGTACTCCCT 59.093 45.455 0.00 0.00 41.91 4.20
1583 2099 3.055747 AGCAACTTAGCAAGTACTCCCTC 60.056 47.826 0.00 0.00 41.91 4.30
1584 2100 3.863041 CAACTTAGCAAGTACTCCCTCC 58.137 50.000 0.00 0.00 41.91 4.30
1585 2101 2.100989 ACTTAGCAAGTACTCCCTCCG 58.899 52.381 0.00 0.00 40.69 4.63
1586 2102 2.100989 CTTAGCAAGTACTCCCTCCGT 58.899 52.381 0.00 0.00 0.00 4.69
1587 2103 2.226962 TAGCAAGTACTCCCTCCGTT 57.773 50.000 0.00 0.00 0.00 4.44
1588 2104 0.896226 AGCAAGTACTCCCTCCGTTC 59.104 55.000 0.00 0.00 0.00 3.95
1589 2105 0.458025 GCAAGTACTCCCTCCGTTCG 60.458 60.000 0.00 0.00 0.00 3.95
1590 2106 0.172803 CAAGTACTCCCTCCGTTCGG 59.827 60.000 4.74 4.74 0.00 4.30
1591 2107 0.038744 AAGTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55
1592 2108 0.679321 AGTACTCCCTCCGTTCGGAC 60.679 60.000 10.00 0.00 0.00 4.79
1593 2109 0.679321 GTACTCCCTCCGTTCGGACT 60.679 60.000 10.00 0.00 0.00 3.85
1594 2110 0.038744 TACTCCCTCCGTTCGGACTT 59.961 55.000 10.00 0.00 0.00 3.01
1595 2111 0.038744 ACTCCCTCCGTTCGGACTTA 59.961 55.000 10.00 0.00 0.00 2.24
1596 2112 0.455005 CTCCCTCCGTTCGGACTTAC 59.545 60.000 10.00 0.00 0.00 2.34
1597 2113 0.038744 TCCCTCCGTTCGGACTTACT 59.961 55.000 10.00 0.00 0.00 2.24
1598 2114 0.893447 CCCTCCGTTCGGACTTACTT 59.107 55.000 10.00 0.00 0.00 2.24
1599 2115 1.403780 CCCTCCGTTCGGACTTACTTG 60.404 57.143 10.00 0.00 0.00 3.16
1600 2116 1.271656 CCTCCGTTCGGACTTACTTGT 59.728 52.381 10.00 0.00 0.00 3.16
1601 2117 2.593257 CTCCGTTCGGACTTACTTGTC 58.407 52.381 10.00 0.00 36.31 3.18
1602 2118 1.069022 TCCGTTCGGACTTACTTGTCG 60.069 52.381 10.00 0.00 37.81 4.35
1603 2119 0.706729 CGTTCGGACTTACTTGTCGC 59.293 55.000 0.00 0.00 37.81 5.19
1604 2120 0.706729 GTTCGGACTTACTTGTCGCG 59.293 55.000 0.00 0.00 37.81 5.87
1605 2121 0.387622 TTCGGACTTACTTGTCGCGG 60.388 55.000 6.13 0.00 37.81 6.46
1606 2122 1.210931 CGGACTTACTTGTCGCGGA 59.789 57.895 6.13 0.00 37.81 5.54
1607 2123 0.387622 CGGACTTACTTGTCGCGGAA 60.388 55.000 6.13 0.00 37.81 4.30
1608 2124 1.787012 GGACTTACTTGTCGCGGAAA 58.213 50.000 6.13 0.00 37.81 3.13
1609 2125 2.344025 GGACTTACTTGTCGCGGAAAT 58.656 47.619 6.13 0.00 37.81 2.17
1610 2126 2.093783 GGACTTACTTGTCGCGGAAATG 59.906 50.000 6.13 0.00 37.81 2.32
1611 2127 2.073816 ACTTACTTGTCGCGGAAATGG 58.926 47.619 6.13 0.00 0.00 3.16
1612 2128 2.289195 ACTTACTTGTCGCGGAAATGGA 60.289 45.455 6.13 0.00 0.00 3.41
1613 2129 2.684001 TACTTGTCGCGGAAATGGAT 57.316 45.000 6.13 0.00 0.00 3.41
1614 2130 1.086696 ACTTGTCGCGGAAATGGATG 58.913 50.000 6.13 0.00 0.00 3.51
1615 2131 1.086696 CTTGTCGCGGAAATGGATGT 58.913 50.000 6.13 0.00 0.00 3.06
1616 2132 2.276201 CTTGTCGCGGAAATGGATGTA 58.724 47.619 6.13 0.00 0.00 2.29
1617 2133 2.613026 TGTCGCGGAAATGGATGTAT 57.387 45.000 6.13 0.00 0.00 2.29
1618 2134 2.479837 TGTCGCGGAAATGGATGTATC 58.520 47.619 6.13 0.00 0.00 2.24
1619 2135 2.102420 TGTCGCGGAAATGGATGTATCT 59.898 45.455 6.13 0.00 0.00 1.98
1620 2136 3.319689 TGTCGCGGAAATGGATGTATCTA 59.680 43.478 6.13 0.00 0.00 1.98
1621 2137 3.921021 GTCGCGGAAATGGATGTATCTAG 59.079 47.826 6.13 0.00 0.00 2.43
1622 2138 3.824443 TCGCGGAAATGGATGTATCTAGA 59.176 43.478 6.13 0.00 0.00 2.43
1623 2139 3.921021 CGCGGAAATGGATGTATCTAGAC 59.079 47.826 0.00 0.00 0.00 2.59
1624 2140 3.921021 GCGGAAATGGATGTATCTAGACG 59.079 47.826 0.00 0.00 0.00 4.18
1625 2141 4.558898 GCGGAAATGGATGTATCTAGACGT 60.559 45.833 0.00 0.00 0.00 4.34
1626 2142 5.335426 GCGGAAATGGATGTATCTAGACGTA 60.335 44.000 0.00 0.00 0.00 3.57
1627 2143 6.625300 GCGGAAATGGATGTATCTAGACGTAT 60.625 42.308 0.00 0.00 0.00 3.06
1628 2144 7.313646 CGGAAATGGATGTATCTAGACGTATT 58.686 38.462 0.00 0.00 0.00 1.89
1629 2145 7.813148 CGGAAATGGATGTATCTAGACGTATTT 59.187 37.037 0.00 0.00 0.00 1.40
1630 2146 9.490379 GGAAATGGATGTATCTAGACGTATTTT 57.510 33.333 0.00 0.00 0.00 1.82
1653 2169 9.542462 TTTTAGTTCTAGATACATCCATTTCCG 57.458 33.333 0.00 0.00 0.00 4.30
1654 2170 6.978674 AGTTCTAGATACATCCATTTCCGA 57.021 37.500 0.00 0.00 0.00 4.55
1655 2171 6.987386 AGTTCTAGATACATCCATTTCCGAG 58.013 40.000 0.00 0.00 0.00 4.63
1656 2172 6.778069 AGTTCTAGATACATCCATTTCCGAGA 59.222 38.462 0.00 0.00 0.00 4.04
1657 2173 6.576662 TCTAGATACATCCATTTCCGAGAC 57.423 41.667 0.00 0.00 0.00 3.36
1658 2174 6.068670 TCTAGATACATCCATTTCCGAGACA 58.931 40.000 0.00 0.00 0.00 3.41
1659 2175 5.614324 AGATACATCCATTTCCGAGACAA 57.386 39.130 0.00 0.00 0.00 3.18
1660 2176 5.605534 AGATACATCCATTTCCGAGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
1661 2177 3.703001 ACATCCATTTCCGAGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
1662 2178 4.819105 ACATCCATTTCCGAGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
1663 2179 5.160607 ACATCCATTTCCGAGACAAGTAA 57.839 39.130 0.00 0.00 0.00 2.24
1664 2180 5.745227 ACATCCATTTCCGAGACAAGTAAT 58.255 37.500 0.00 0.00 0.00 1.89
1665 2181 6.180472 ACATCCATTTCCGAGACAAGTAATT 58.820 36.000 0.00 0.00 0.00 1.40
1666 2182 6.316390 ACATCCATTTCCGAGACAAGTAATTC 59.684 38.462 0.00 0.00 0.00 2.17
1667 2183 5.183228 TCCATTTCCGAGACAAGTAATTCC 58.817 41.667 0.00 0.00 0.00 3.01
1668 2184 4.034048 CCATTTCCGAGACAAGTAATTCCG 59.966 45.833 0.00 0.00 0.00 4.30
1669 2185 4.524316 TTTCCGAGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
1670 2186 4.524316 TTCCGAGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
1671 2187 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
1672 2188 2.597305 CCGAGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
1673 2189 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
1674 2190 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
1675 2191 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
1676 2192 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
1677 2193 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
1678 2194 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
1679 2195 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
1680 2196 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
1681 2197 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
1682 2198 1.109609 ATTCCGAACGGAGGGAGTAC 58.890 55.000 15.34 0.00 46.06 2.73
1683 2199 0.038744 TTCCGAACGGAGGGAGTACT 59.961 55.000 15.34 0.00 46.06 2.73
1738 2254 7.038048 TCAGTCTGTATTTGAGCTGTCATTAG 58.962 38.462 0.00 0.00 30.85 1.73
1869 2386 1.202371 GCCACATGCATCATGGTCTTG 60.202 52.381 22.09 2.92 45.16 3.02
2075 2606 1.202348 GCTGTACCCAATGCCAACTTC 59.798 52.381 0.00 0.00 0.00 3.01
2084 2615 3.321682 CCAATGCCAACTTCTTTCCTGAA 59.678 43.478 0.00 0.00 0.00 3.02
2253 2791 5.994054 CCATCTCGATTATTCAGGATTGTGT 59.006 40.000 0.00 0.00 0.00 3.72
2254 2792 6.073385 CCATCTCGATTATTCAGGATTGTGTG 60.073 42.308 0.00 0.00 0.00 3.82
2255 2793 6.220726 TCTCGATTATTCAGGATTGTGTGA 57.779 37.500 0.00 0.00 0.00 3.58
2256 2794 6.639563 TCTCGATTATTCAGGATTGTGTGAA 58.360 36.000 0.00 0.00 37.10 3.18
2257 2795 7.102993 TCTCGATTATTCAGGATTGTGTGAAA 58.897 34.615 0.00 0.00 36.31 2.69
2258 2796 7.278646 TCTCGATTATTCAGGATTGTGTGAAAG 59.721 37.037 0.00 0.00 36.31 2.62
2341 2880 5.992729 TCTTTTTCGCGCATTAGTTTTACT 58.007 33.333 8.75 0.00 0.00 2.24
2395 2935 3.126343 CCGAAAGCAACACACTAATACCC 59.874 47.826 0.00 0.00 0.00 3.69
2576 3120 9.384764 AGATTTGCTAGTACTTTTAGGTTGATC 57.615 33.333 0.00 0.00 0.00 2.92
2675 3268 9.161629 TGTATGACTCAGTTAAATTGGTATGTG 57.838 33.333 0.00 0.00 0.00 3.21
2821 3423 7.775053 ATTCCTACTTAGACTGATGGAGATC 57.225 40.000 0.00 0.00 0.00 2.75
2828 3430 2.692557 AGACTGATGGAGATCAAGTCCG 59.307 50.000 0.00 0.00 38.17 4.79
2926 3529 7.778083 AGCACAATGTATGATGATCATGTTTT 58.222 30.769 17.74 5.63 37.70 2.43
3088 3740 1.931635 TTAACACCAGGGCCCATTTC 58.068 50.000 27.56 0.00 0.00 2.17
3106 3759 7.285401 GCCCATTTCTATAGTTCTCATTTTCCA 59.715 37.037 0.00 0.00 0.00 3.53
3173 4044 8.959705 ACCAGGAATAACTGTTTAGCTAATAC 57.040 34.615 7.08 9.05 36.75 1.89
3188 4067 8.867112 TTAGCTAATACAGAAACGTAGAATGG 57.133 34.615 0.86 0.00 0.00 3.16
3257 4142 5.512942 TTGGTGAATTATCCCTTGTCTCA 57.487 39.130 0.00 0.00 0.00 3.27
3368 4271 4.469586 TCATTCTGCTACTGGTACAATCCA 59.530 41.667 0.00 0.00 38.70 3.41
3385 4288 2.253610 TCCAGGTGAATGAGTAACCGT 58.746 47.619 0.00 0.00 39.07 4.83
3438 4342 5.680594 AACATGGACCATAATGTTTGCAT 57.319 34.783 6.67 0.00 42.85 3.96
3458 4362 8.925161 TTGCATACAAGTATTTAATGGCTTTC 57.075 30.769 0.00 0.00 0.00 2.62
3488 4399 2.608546 GTGCTGCTCATGTCTGATCTTC 59.391 50.000 0.00 0.00 0.00 2.87
3632 4543 0.457509 CGCAAATAAATGGCGGTGCA 60.458 50.000 0.00 0.00 46.46 4.57
3647 4558 2.930040 CGGTGCAGAAGGTGTAATAGTG 59.070 50.000 0.00 0.00 0.00 2.74
4039 4950 1.722011 CGGGTTAAGTGCTACACTGG 58.278 55.000 0.15 0.00 44.62 4.00
4040 4951 1.001633 CGGGTTAAGTGCTACACTGGT 59.998 52.381 0.15 0.00 44.62 4.00
4082 4993 1.326548 GGTAACGATGACGAATGCCAC 59.673 52.381 0.00 0.00 42.66 5.01
4180 5100 4.568380 CCTCATGTTTGAAGGGGAGAATGA 60.568 45.833 0.00 0.00 0.00 2.57
4561 5488 7.864108 TTTGTTGATCTTTTTCTCTGACTGA 57.136 32.000 0.00 0.00 0.00 3.41
4772 5713 0.248094 TCGCTCGTATCAACAGCGAG 60.248 55.000 10.99 8.57 46.92 5.03
4786 5751 3.531829 CGAGATCGCGCTGGATTC 58.468 61.111 5.77 2.26 0.00 2.52
4787 5752 1.007964 CGAGATCGCGCTGGATTCT 60.008 57.895 5.77 0.00 0.00 2.40
4788 5753 1.274126 CGAGATCGCGCTGGATTCTG 61.274 60.000 5.77 0.00 0.00 3.02
4789 5754 0.943359 GAGATCGCGCTGGATTCTGG 60.943 60.000 5.56 0.00 0.00 3.86
4790 5755 1.958205 GATCGCGCTGGATTCTGGG 60.958 63.158 5.56 0.00 0.00 4.45
4791 5756 2.650813 GATCGCGCTGGATTCTGGGT 62.651 60.000 5.56 0.00 0.00 4.51
4792 5757 1.399744 ATCGCGCTGGATTCTGGGTA 61.400 55.000 5.56 0.00 0.00 3.69
4793 5758 1.592669 CGCGCTGGATTCTGGGTAG 60.593 63.158 5.56 0.00 0.00 3.18
4794 5759 1.823295 GCGCTGGATTCTGGGTAGA 59.177 57.895 0.00 0.00 0.00 2.59
4795 5760 0.249657 GCGCTGGATTCTGGGTAGAG 60.250 60.000 0.00 0.00 33.70 2.43
4796 5761 0.249657 CGCTGGATTCTGGGTAGAGC 60.250 60.000 0.00 0.00 33.70 4.09
4797 5762 1.127343 GCTGGATTCTGGGTAGAGCT 58.873 55.000 0.00 0.00 33.70 4.09
4798 5763 1.202627 GCTGGATTCTGGGTAGAGCTG 60.203 57.143 0.00 0.00 33.70 4.24
4799 5764 2.392662 CTGGATTCTGGGTAGAGCTGA 58.607 52.381 0.00 0.00 33.70 4.26
4800 5765 2.364970 CTGGATTCTGGGTAGAGCTGAG 59.635 54.545 0.00 0.00 33.70 3.35
4801 5766 1.069978 GGATTCTGGGTAGAGCTGAGC 59.930 57.143 0.00 0.00 33.70 4.26
4802 5767 2.038659 GATTCTGGGTAGAGCTGAGCT 58.961 52.381 6.69 6.69 43.88 4.09
4824 5811 5.536161 GCTAGGCTTGGATGGAATTTTCATA 59.464 40.000 0.00 0.00 0.00 2.15
4902 5889 0.179150 GCAGCAGGTGTAGTCTCTCG 60.179 60.000 0.66 0.00 0.00 4.04
4937 5943 3.789858 CTGCTGCTGCTGCTGTCG 61.790 66.667 27.67 12.72 39.81 4.35
4979 5985 1.128188 GTCTCCCACCCTGGAACTGT 61.128 60.000 0.00 0.00 40.96 3.55
5041 9285 5.647589 TCAGTATGGATGTTCAGTTACGAC 58.352 41.667 0.00 0.00 36.16 4.34
5084 9328 2.902523 CTGCTCTAGCTCTGCATCAAA 58.097 47.619 8.33 0.00 42.66 2.69
5161 9406 0.165944 CGTTGGCGACATCAGTTTCC 59.834 55.000 5.58 0.00 42.32 3.13
5204 9742 9.803315 TGAATACTGTATGAGTTTACTAGCAAG 57.197 33.333 0.22 0.00 35.96 4.01
5208 9746 8.350852 ACTGTATGAGTTTACTAGCAAGTACT 57.649 34.615 0.00 0.00 37.94 2.73
5209 9747 8.460428 ACTGTATGAGTTTACTAGCAAGTACTC 58.540 37.037 0.00 1.89 39.94 2.59
5211 9749 5.656213 TGAGTTTACTAGCAAGTACTCCC 57.344 43.478 0.00 0.00 39.25 4.30
5212 9750 5.331069 TGAGTTTACTAGCAAGTACTCCCT 58.669 41.667 0.00 0.00 39.25 4.20
5214 9752 6.071503 TGAGTTTACTAGCAAGTACTCCCTTC 60.072 42.308 0.00 0.00 39.25 3.46
5215 9753 4.978083 TTACTAGCAAGTACTCCCTTCG 57.022 45.455 0.00 0.00 37.94 3.79
5216 9754 2.805194 ACTAGCAAGTACTCCCTTCGT 58.195 47.619 0.00 0.00 32.84 3.85
5217 9755 2.754002 ACTAGCAAGTACTCCCTTCGTC 59.246 50.000 0.00 0.00 32.84 4.20
5218 9756 0.896226 AGCAAGTACTCCCTTCGTCC 59.104 55.000 0.00 0.00 0.00 4.79
5219 9757 0.606604 GCAAGTACTCCCTTCGTCCA 59.393 55.000 0.00 0.00 0.00 4.02
5221 9759 2.168496 CAAGTACTCCCTTCGTCCAGA 58.832 52.381 0.00 0.00 0.00 3.86
5222 9760 2.561419 CAAGTACTCCCTTCGTCCAGAA 59.439 50.000 0.00 0.00 37.31 3.02
5223 9761 2.885616 AGTACTCCCTTCGTCCAGAAA 58.114 47.619 0.00 0.00 38.57 2.52
5225 9763 4.607239 AGTACTCCCTTCGTCCAGAAATA 58.393 43.478 0.00 0.00 38.57 1.40
5227 9765 3.442076 ACTCCCTTCGTCCAGAAATACT 58.558 45.455 0.00 0.00 38.57 2.12
5231 9769 3.436496 CCTTCGTCCAGAAATACTCGTC 58.564 50.000 0.00 0.00 38.57 4.20
5232 9770 2.819422 TCGTCCAGAAATACTCGTCG 57.181 50.000 0.00 0.00 0.00 5.12
5233 9771 2.079158 TCGTCCAGAAATACTCGTCGT 58.921 47.619 0.00 0.00 0.00 4.34
5234 9772 3.261580 TCGTCCAGAAATACTCGTCGTA 58.738 45.455 0.00 0.00 0.00 3.43
5235 9773 3.308053 TCGTCCAGAAATACTCGTCGTAG 59.692 47.826 0.00 0.00 0.00 3.51
5236 9774 3.308053 CGTCCAGAAATACTCGTCGTAGA 59.692 47.826 0.00 0.00 0.00 2.59
5238 9776 5.634896 GTCCAGAAATACTCGTCGTAGAAA 58.365 41.667 0.00 0.00 39.69 2.52
5239 9777 6.264088 GTCCAGAAATACTCGTCGTAGAAAT 58.736 40.000 0.00 0.00 39.69 2.17
5240 9778 6.196724 GTCCAGAAATACTCGTCGTAGAAATG 59.803 42.308 0.00 0.00 39.69 2.32
5241 9779 5.459107 CCAGAAATACTCGTCGTAGAAATGG 59.541 44.000 0.00 0.00 39.69 3.16
5242 9780 6.263344 CAGAAATACTCGTCGTAGAAATGGA 58.737 40.000 0.00 0.00 39.69 3.41
5244 9782 8.074370 CAGAAATACTCGTCGTAGAAATGGATA 58.926 37.037 0.00 0.00 39.69 2.59
5245 9783 8.074972 AGAAATACTCGTCGTAGAAATGGATAC 58.925 37.037 0.00 0.00 39.69 2.24
5298 9929 7.017319 TCTAGATACATCTATTCCTCGGACA 57.983 40.000 0.00 0.00 38.60 4.02
5299 9930 7.459234 TCTAGATACATCTATTCCTCGGACAA 58.541 38.462 0.00 0.00 38.60 3.18
5303 9934 7.891183 AGATACATCTATTCCTCGGACAAGTAT 59.109 37.037 0.00 0.00 34.85 2.12
5304 9935 6.732896 ACATCTATTCCTCGGACAAGTATT 57.267 37.500 0.00 0.00 0.00 1.89
5305 9936 7.125792 ACATCTATTCCTCGGACAAGTATTT 57.874 36.000 0.00 0.00 0.00 1.40
5307 9938 7.711339 ACATCTATTCCTCGGACAAGTATTTTC 59.289 37.037 0.00 0.00 0.00 2.29
5309 9940 7.265673 TCTATTCCTCGGACAAGTATTTTCAG 58.734 38.462 0.00 0.00 0.00 3.02
5322 9953 5.021458 AGTATTTTCAGACGGAGGGAGTAA 58.979 41.667 0.00 0.00 0.00 2.24
5323 9954 4.903045 ATTTTCAGACGGAGGGAGTAAA 57.097 40.909 0.00 0.00 0.00 2.01
5359 10015 1.847818 CATCAAAATGCCCATCAGCG 58.152 50.000 0.00 0.00 34.65 5.18
5360 10016 0.103572 ATCAAAATGCCCATCAGCGC 59.896 50.000 0.00 0.00 34.65 5.92
5361 10017 1.874915 CAAAATGCCCATCAGCGCG 60.875 57.895 0.00 0.00 34.65 6.86
5366 10022 3.869272 GCCCATCAGCGCGAACAG 61.869 66.667 12.10 0.00 0.00 3.16
5384 10040 3.036429 GCATCCTCGAAGGCAGGGT 62.036 63.158 0.00 0.00 34.61 4.34
5388 10044 2.125912 CTCGAAGGCAGGGTGACG 60.126 66.667 0.00 0.00 0.00 4.35
5391 10047 2.281484 GAAGGCAGGGTGACGCAA 60.281 61.111 1.61 0.00 0.00 4.85
5400 10057 4.030452 GTGACGCAAGCCAGGTGC 62.030 66.667 0.00 0.00 45.62 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 8.801715 AAAGTGTTCATGATTGTTTGTGTATC 57.198 30.769 0.00 0.00 0.00 2.24
51 52 9.033481 CAAAAGTGTTCATGATTGTTTGTGTAT 57.967 29.630 0.00 0.00 0.00 2.29
54 55 7.522901 TCAAAAGTGTTCATGATTGTTTGTG 57.477 32.000 0.00 0.00 0.00 3.33
60 72 6.369615 GGGGAAATCAAAAGTGTTCATGATTG 59.630 38.462 0.00 0.00 40.58 2.67
221 245 5.885449 TTTGGGACATCAAAAATGTTCCT 57.115 34.783 14.90 0.00 45.79 3.36
343 374 3.729965 CTGCGCGCTGGGAGAAGAT 62.730 63.158 33.29 0.00 0.00 2.40
471 503 2.030363 CACGCAAATTGCCTCCAAAGTA 60.030 45.455 12.80 0.00 41.12 2.24
597 629 5.635700 CGGACCTTCATAGCTTTAATCTAGC 59.364 44.000 0.00 0.00 38.93 3.42
600 632 5.128827 TCACGGACCTTCATAGCTTTAATCT 59.871 40.000 0.00 0.00 0.00 2.40
601 633 5.357257 TCACGGACCTTCATAGCTTTAATC 58.643 41.667 0.00 0.00 0.00 1.75
602 634 5.353394 TCACGGACCTTCATAGCTTTAAT 57.647 39.130 0.00 0.00 0.00 1.40
605 637 3.335579 GTTCACGGACCTTCATAGCTTT 58.664 45.455 0.00 0.00 0.00 3.51
606 638 2.354805 GGTTCACGGACCTTCATAGCTT 60.355 50.000 0.00 0.00 36.73 3.74
607 639 1.207329 GGTTCACGGACCTTCATAGCT 59.793 52.381 0.00 0.00 36.73 3.32
608 640 1.653151 GGTTCACGGACCTTCATAGC 58.347 55.000 0.00 0.00 36.73 2.97
615 647 0.037734 GAATTGGGGTTCACGGACCT 59.962 55.000 0.00 0.00 39.71 3.85
616 648 0.963856 GGAATTGGGGTTCACGGACC 60.964 60.000 0.00 0.00 39.04 4.46
617 649 0.963856 GGGAATTGGGGTTCACGGAC 60.964 60.000 0.00 0.00 0.00 4.79
618 650 1.381076 GGGAATTGGGGTTCACGGA 59.619 57.895 0.00 0.00 0.00 4.69
619 651 4.012138 GGGAATTGGGGTTCACGG 57.988 61.111 0.00 0.00 0.00 4.94
620 652 3.585856 CGGGAATTGGGGTTCACG 58.414 61.111 0.00 0.00 46.89 4.35
623 655 1.753078 GAGGCGGGAATTGGGGTTC 60.753 63.158 0.00 0.00 0.00 3.62
624 656 1.800229 AAGAGGCGGGAATTGGGGTT 61.800 55.000 0.00 0.00 0.00 4.11
626 658 1.453928 GAAGAGGCGGGAATTGGGG 60.454 63.158 0.00 0.00 0.00 4.96
627 659 0.034089 AAGAAGAGGCGGGAATTGGG 60.034 55.000 0.00 0.00 0.00 4.12
628 660 1.383523 GAAGAAGAGGCGGGAATTGG 58.616 55.000 0.00 0.00 0.00 3.16
629 661 1.009829 CGAAGAAGAGGCGGGAATTG 58.990 55.000 0.00 0.00 0.00 2.32
631 663 1.522569 CCGAAGAAGAGGCGGGAAT 59.477 57.895 0.00 0.00 41.29 3.01
632 664 2.978824 CCGAAGAAGAGGCGGGAA 59.021 61.111 0.00 0.00 41.29 3.97
633 665 3.771160 GCCGAAGAAGAGGCGGGA 61.771 66.667 0.00 0.00 44.22 5.14
640 672 3.961480 TCAAGAAGATGCCGAAGAAGA 57.039 42.857 0.00 0.00 0.00 2.87
642 674 4.162320 ACCTATCAAGAAGATGCCGAAGAA 59.838 41.667 0.00 0.00 37.57 2.52
643 675 3.706594 ACCTATCAAGAAGATGCCGAAGA 59.293 43.478 0.00 0.00 37.57 2.87
644 676 4.065321 ACCTATCAAGAAGATGCCGAAG 57.935 45.455 0.00 0.00 37.57 3.79
645 677 5.607939 TTACCTATCAAGAAGATGCCGAA 57.392 39.130 0.00 0.00 37.57 4.30
646 678 5.128827 AGTTTACCTATCAAGAAGATGCCGA 59.871 40.000 0.00 0.00 37.57 5.54
647 679 5.360591 AGTTTACCTATCAAGAAGATGCCG 58.639 41.667 0.00 0.00 37.57 5.69
649 681 7.849804 TTGAGTTTACCTATCAAGAAGATGC 57.150 36.000 0.00 0.00 37.57 3.91
657 689 6.296259 GGGACCTTCTTGAGTTTACCTATCAA 60.296 42.308 0.00 0.00 0.00 2.57
658 690 5.189145 GGGACCTTCTTGAGTTTACCTATCA 59.811 44.000 0.00 0.00 0.00 2.15
660 692 5.098663 TGGGACCTTCTTGAGTTTACCTAT 58.901 41.667 0.00 0.00 0.00 2.57
661 693 4.495565 TGGGACCTTCTTGAGTTTACCTA 58.504 43.478 0.00 0.00 0.00 3.08
662 694 3.323775 TGGGACCTTCTTGAGTTTACCT 58.676 45.455 0.00 0.00 0.00 3.08
663 695 3.782656 TGGGACCTTCTTGAGTTTACC 57.217 47.619 0.00 0.00 0.00 2.85
664 696 6.473758 ACTAATGGGACCTTCTTGAGTTTAC 58.526 40.000 0.00 0.00 0.00 2.01
666 698 5.310857 AGACTAATGGGACCTTCTTGAGTTT 59.689 40.000 0.00 0.00 0.00 2.66
667 699 4.846940 AGACTAATGGGACCTTCTTGAGTT 59.153 41.667 0.00 0.00 0.00 3.01
669 701 5.046304 TCAAGACTAATGGGACCTTCTTGAG 60.046 44.000 7.57 0.00 42.39 3.02
670 702 4.844085 TCAAGACTAATGGGACCTTCTTGA 59.156 41.667 7.57 7.57 44.09 3.02
671 703 4.938226 GTCAAGACTAATGGGACCTTCTTG 59.062 45.833 0.00 0.00 40.78 3.02
672 704 4.597507 TGTCAAGACTAATGGGACCTTCTT 59.402 41.667 1.53 0.00 0.00 2.52
673 705 4.168101 TGTCAAGACTAATGGGACCTTCT 58.832 43.478 1.53 0.00 0.00 2.85
674 706 4.020128 ACTGTCAAGACTAATGGGACCTTC 60.020 45.833 1.53 0.00 0.00 3.46
675 707 3.910627 ACTGTCAAGACTAATGGGACCTT 59.089 43.478 1.53 0.00 0.00 3.50
676 708 3.515901 GACTGTCAAGACTAATGGGACCT 59.484 47.826 2.24 0.00 0.00 3.85
677 709 3.515901 AGACTGTCAAGACTAATGGGACC 59.484 47.826 10.88 0.00 0.00 4.46
678 710 4.499183 CAGACTGTCAAGACTAATGGGAC 58.501 47.826 10.88 0.00 0.00 4.46
679 711 3.055819 GCAGACTGTCAAGACTAATGGGA 60.056 47.826 10.88 0.00 0.00 4.37
680 712 3.265791 GCAGACTGTCAAGACTAATGGG 58.734 50.000 10.88 0.00 0.00 4.00
681 713 3.681897 GTGCAGACTGTCAAGACTAATGG 59.318 47.826 10.88 0.00 0.00 3.16
682 714 4.564041 AGTGCAGACTGTCAAGACTAATG 58.436 43.478 10.88 0.00 0.00 1.90
684 716 4.141937 ACAAGTGCAGACTGTCAAGACTAA 60.142 41.667 10.88 0.00 30.61 2.24
849 882 3.057806 GGACTTTGGACATGTTTTACCGG 60.058 47.826 0.00 0.00 0.00 5.28
919 952 4.266714 CGAAAGTGGGATTTAGGGCTTTA 58.733 43.478 0.00 0.00 0.00 1.85
935 968 1.409427 CGGCTCCTATCTTCCGAAAGT 59.591 52.381 0.00 0.00 44.23 2.66
1227 1463 4.410400 GACAGGGGCCGGTCTTGG 62.410 72.222 16.95 0.00 37.97 3.61
1407 1916 4.608170 TCCTTAATTTCAGGCTCCCAAT 57.392 40.909 0.00 0.00 0.00 3.16
1423 1932 3.559069 AGACGGGTCATCGTTATCCTTA 58.441 45.455 1.17 0.00 43.96 2.69
1435 1944 1.001633 GGTAAGAGCAAAGACGGGTCA 59.998 52.381 1.17 0.00 35.30 4.02
1454 1963 5.841957 ATTTGCTGCCAACTAATCTTAGG 57.158 39.130 0.00 0.00 35.08 2.69
1457 1966 6.406177 CCACATATTTGCTGCCAACTAATCTT 60.406 38.462 0.00 0.00 0.00 2.40
1458 1967 5.068198 CCACATATTTGCTGCCAACTAATCT 59.932 40.000 0.00 0.00 0.00 2.40
1566 2082 2.100989 ACGGAGGGAGTACTTGCTAAG 58.899 52.381 0.00 0.00 0.00 2.18
1578 2094 0.038744 AGTAAGTCCGAACGGAGGGA 59.961 55.000 16.35 1.82 46.16 4.20
1579 2095 0.893447 AAGTAAGTCCGAACGGAGGG 59.107 55.000 16.35 0.00 46.16 4.30
1580 2096 1.271656 ACAAGTAAGTCCGAACGGAGG 59.728 52.381 16.35 3.56 46.16 4.30
1581 2097 2.593257 GACAAGTAAGTCCGAACGGAG 58.407 52.381 16.35 5.63 46.16 4.63
1582 2098 1.069022 CGACAAGTAAGTCCGAACGGA 60.069 52.381 12.04 12.04 42.90 4.69
1583 2099 1.334054 CGACAAGTAAGTCCGAACGG 58.666 55.000 6.94 6.94 35.07 4.44
1584 2100 0.706729 GCGACAAGTAAGTCCGAACG 59.293 55.000 0.00 0.00 35.07 3.95
1585 2101 0.706729 CGCGACAAGTAAGTCCGAAC 59.293 55.000 0.00 0.00 35.59 3.95
1586 2102 0.387622 CCGCGACAAGTAAGTCCGAA 60.388 55.000 8.23 0.00 35.59 4.30
1587 2103 1.210931 CCGCGACAAGTAAGTCCGA 59.789 57.895 8.23 0.00 35.59 4.55
1588 2104 0.387622 TTCCGCGACAAGTAAGTCCG 60.388 55.000 8.23 0.00 35.07 4.79
1589 2105 1.787012 TTTCCGCGACAAGTAAGTCC 58.213 50.000 8.23 0.00 35.07 3.85
1590 2106 2.093783 CCATTTCCGCGACAAGTAAGTC 59.906 50.000 8.23 0.00 35.19 3.01
1591 2107 2.073816 CCATTTCCGCGACAAGTAAGT 58.926 47.619 8.23 0.00 0.00 2.24
1592 2108 2.343101 TCCATTTCCGCGACAAGTAAG 58.657 47.619 8.23 0.00 0.00 2.34
1593 2109 2.459060 TCCATTTCCGCGACAAGTAA 57.541 45.000 8.23 0.00 0.00 2.24
1594 2110 2.276201 CATCCATTTCCGCGACAAGTA 58.724 47.619 8.23 0.00 0.00 2.24
1595 2111 1.086696 CATCCATTTCCGCGACAAGT 58.913 50.000 8.23 0.00 0.00 3.16
1596 2112 1.086696 ACATCCATTTCCGCGACAAG 58.913 50.000 8.23 0.00 0.00 3.16
1597 2113 2.388310 TACATCCATTTCCGCGACAA 57.612 45.000 8.23 0.00 0.00 3.18
1598 2114 2.102420 AGATACATCCATTTCCGCGACA 59.898 45.455 8.23 0.00 0.00 4.35
1599 2115 2.755650 AGATACATCCATTTCCGCGAC 58.244 47.619 8.23 0.00 0.00 5.19
1600 2116 3.824443 TCTAGATACATCCATTTCCGCGA 59.176 43.478 8.23 0.00 0.00 5.87
1601 2117 3.921021 GTCTAGATACATCCATTTCCGCG 59.079 47.826 0.00 0.00 0.00 6.46
1602 2118 3.921021 CGTCTAGATACATCCATTTCCGC 59.079 47.826 0.00 0.00 0.00 5.54
1603 2119 5.122512 ACGTCTAGATACATCCATTTCCG 57.877 43.478 0.00 0.00 0.00 4.30
1604 2120 9.490379 AAAATACGTCTAGATACATCCATTTCC 57.510 33.333 0.00 0.00 0.00 3.13
1627 2143 9.542462 CGGAAATGGATGTATCTAGAACTAAAA 57.458 33.333 0.00 0.00 0.00 1.52
1628 2144 8.920174 TCGGAAATGGATGTATCTAGAACTAAA 58.080 33.333 0.00 0.00 0.00 1.85
1629 2145 8.473358 TCGGAAATGGATGTATCTAGAACTAA 57.527 34.615 0.00 0.00 0.00 2.24
1630 2146 7.942894 TCTCGGAAATGGATGTATCTAGAACTA 59.057 37.037 0.00 0.00 0.00 2.24
1631 2147 6.778069 TCTCGGAAATGGATGTATCTAGAACT 59.222 38.462 0.00 0.00 0.00 3.01
1632 2148 6.864165 GTCTCGGAAATGGATGTATCTAGAAC 59.136 42.308 0.00 0.00 0.00 3.01
1633 2149 6.549736 TGTCTCGGAAATGGATGTATCTAGAA 59.450 38.462 0.00 0.00 0.00 2.10
1634 2150 6.068670 TGTCTCGGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
1635 2151 6.332735 TGTCTCGGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
1636 2152 6.323996 ACTTGTCTCGGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 0.00 1.98
1637 2153 5.129485 ACTTGTCTCGGAAATGGATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
1638 2154 5.360591 ACTTGTCTCGGAAATGGATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
1639 2155 5.359194 ACTTGTCTCGGAAATGGATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
1640 2156 4.819105 ACTTGTCTCGGAAATGGATGTA 57.181 40.909 0.00 0.00 0.00 2.29
1641 2157 3.703001 ACTTGTCTCGGAAATGGATGT 57.297 42.857 0.00 0.00 0.00 3.06
1642 2158 6.238484 GGAATTACTTGTCTCGGAAATGGATG 60.238 42.308 0.00 0.00 0.00 3.51
1643 2159 5.823045 GGAATTACTTGTCTCGGAAATGGAT 59.177 40.000 0.00 0.00 0.00 3.41
1644 2160 5.183228 GGAATTACTTGTCTCGGAAATGGA 58.817 41.667 0.00 0.00 0.00 3.41
1645 2161 4.034048 CGGAATTACTTGTCTCGGAAATGG 59.966 45.833 0.00 0.00 0.00 3.16
1646 2162 4.868171 TCGGAATTACTTGTCTCGGAAATG 59.132 41.667 0.00 0.00 0.00 2.32
1647 2163 5.080969 TCGGAATTACTTGTCTCGGAAAT 57.919 39.130 0.00 0.00 0.00 2.17
1648 2164 4.524316 TCGGAATTACTTGTCTCGGAAA 57.476 40.909 0.00 0.00 0.00 3.13
1649 2165 4.240096 GTTCGGAATTACTTGTCTCGGAA 58.760 43.478 0.00 0.00 0.00 4.30
1650 2166 3.671433 CGTTCGGAATTACTTGTCTCGGA 60.671 47.826 0.00 0.00 0.00 4.55
1651 2167 2.597305 CGTTCGGAATTACTTGTCTCGG 59.403 50.000 0.00 0.00 0.00 4.63
1652 2168 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
1653 2169 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
1654 2170 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
1655 2171 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
1656 2172 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
1657 2173 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
1658 2174 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
1659 2175 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
1660 2176 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
1661 2177 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
1662 2178 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
1663 2179 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
1664 2180 0.038744 AGTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
1665 2181 0.911769 TAGTACTCCCTCCGTTCGGA 59.088 55.000 13.34 13.34 0.00 4.55
1666 2182 1.307097 CTAGTACTCCCTCCGTTCGG 58.693 60.000 0.00 4.74 0.00 4.30
1667 2183 1.669779 CACTAGTACTCCCTCCGTTCG 59.330 57.143 0.00 0.00 0.00 3.95
1668 2184 2.682352 GTCACTAGTACTCCCTCCGTTC 59.318 54.545 0.00 0.00 0.00 3.95
1669 2185 2.308275 AGTCACTAGTACTCCCTCCGTT 59.692 50.000 0.00 0.00 0.00 4.44
1670 2186 1.914798 AGTCACTAGTACTCCCTCCGT 59.085 52.381 0.00 0.00 0.00 4.69
1671 2187 2.713863 AGTCACTAGTACTCCCTCCG 57.286 55.000 0.00 0.00 0.00 4.63
1672 2188 3.748348 GCCTAGTCACTAGTACTCCCTCC 60.748 56.522 11.06 0.00 32.62 4.30
1673 2189 3.117963 TGCCTAGTCACTAGTACTCCCTC 60.118 52.174 11.06 0.00 32.62 4.30
1674 2190 2.851194 TGCCTAGTCACTAGTACTCCCT 59.149 50.000 11.06 0.00 32.62 4.20
1675 2191 3.294038 TGCCTAGTCACTAGTACTCCC 57.706 52.381 11.06 0.00 32.62 4.30
1676 2192 4.500035 GCATTGCCTAGTCACTAGTACTCC 60.500 50.000 11.06 0.00 32.62 3.85
1677 2193 4.339814 AGCATTGCCTAGTCACTAGTACTC 59.660 45.833 11.06 0.00 32.62 2.59
1678 2194 4.098654 CAGCATTGCCTAGTCACTAGTACT 59.901 45.833 11.06 0.00 32.62 2.73
1679 2195 4.142138 ACAGCATTGCCTAGTCACTAGTAC 60.142 45.833 11.06 3.36 32.62 2.73
1680 2196 4.023980 ACAGCATTGCCTAGTCACTAGTA 58.976 43.478 11.06 0.00 32.62 1.82
1681 2197 2.834549 ACAGCATTGCCTAGTCACTAGT 59.165 45.455 11.06 0.00 32.62 2.57
1682 2198 3.193263 CACAGCATTGCCTAGTCACTAG 58.807 50.000 4.66 4.66 34.16 2.57
1683 2199 2.093500 CCACAGCATTGCCTAGTCACTA 60.093 50.000 4.70 0.00 0.00 2.74
1738 2254 5.886960 AATAAGGCATCACAAAGTCTGAC 57.113 39.130 0.00 0.00 0.00 3.51
1869 2386 6.554334 TGAATAAAACAAGTGCAGACTACC 57.446 37.500 0.00 0.00 0.00 3.18
2075 2606 1.068055 GCTGCATGTGGTTCAGGAAAG 60.068 52.381 0.00 0.00 0.00 2.62
2341 2880 5.983720 GCAGAATATAGGCAGAGTAAACGAA 59.016 40.000 0.00 0.00 0.00 3.85
2395 2935 4.578928 ACTAACCCTGTACAAGCACTTTTG 59.421 41.667 0.00 0.00 0.00 2.44
2576 3120 8.356533 AGAAAATTAACAGCTTGTTCAATGTG 57.643 30.769 5.04 0.00 40.22 3.21
2615 3208 9.730420 GTACAAAACAGAGTTCATTGTTGTTAT 57.270 29.630 5.57 0.00 37.57 1.89
2673 3266 3.009143 AGTGGGGAAATAGAAGGTGTCAC 59.991 47.826 0.00 0.00 0.00 3.67
2675 3268 3.610911 CAGTGGGGAAATAGAAGGTGTC 58.389 50.000 0.00 0.00 0.00 3.67
2821 3423 7.429636 TCTAAAAATAGGTCAAACGGACTTG 57.570 36.000 0.00 0.00 46.16 3.16
2908 3511 6.903516 AGGGAGAAAACATGATCATCATACA 58.096 36.000 4.86 0.00 34.28 2.29
2909 3512 7.389053 GGTAGGGAGAAAACATGATCATCATAC 59.611 40.741 4.86 4.36 34.28 2.39
2926 3529 1.770658 CATCAGCCAATGGTAGGGAGA 59.229 52.381 0.00 0.00 0.00 3.71
3007 3610 4.226168 CCCTCCCTTGTCTCTGATAAAACT 59.774 45.833 0.00 0.00 0.00 2.66
3106 3759 8.306313 TGTCATTCACTAGAGTGGTACATTAT 57.694 34.615 9.73 0.00 45.65 1.28
3173 4044 9.751542 AGATAATAAGACCATTCTACGTTTCTG 57.248 33.333 0.00 0.00 0.00 3.02
3257 4142 8.531146 CCAACTACAACAATTGATTCCCTTATT 58.469 33.333 13.59 0.00 0.00 1.40
3264 4149 6.817765 TCTCCCAACTACAACAATTGATTC 57.182 37.500 13.59 0.00 0.00 2.52
3368 4271 1.671850 CGCACGGTTACTCATTCACCT 60.672 52.381 0.00 0.00 0.00 4.00
3385 4288 5.862323 GTGACTACTAAGAAACAGAATCGCA 59.138 40.000 0.00 0.00 0.00 5.10
3458 4362 1.061566 CATGAGCAGCACACGTGTATG 59.938 52.381 22.90 22.58 0.00 2.39
3488 4399 0.900421 TCCTGCACATCAGACAGAGG 59.100 55.000 0.00 0.00 45.72 3.69
3632 4543 4.348020 TCCTCCCACTATTACACCTTCT 57.652 45.455 0.00 0.00 0.00 2.85
3647 4558 1.003696 CCTTCTCCTGTTGTTCCTCCC 59.996 57.143 0.00 0.00 0.00 4.30
4039 4950 5.334879 CCGCTCCATATTGTTATGCCTTTAC 60.335 44.000 0.00 0.00 34.94 2.01
4040 4951 4.759693 CCGCTCCATATTGTTATGCCTTTA 59.240 41.667 0.00 0.00 34.94 1.85
4082 4993 1.402456 CCGTACTTCCACCTTGAGTCG 60.402 57.143 0.00 0.00 0.00 4.18
4180 5100 1.661341 CAGCTTCTCATTTAGCGCCT 58.339 50.000 2.29 0.00 42.18 5.52
4561 5488 5.301555 CCAAACGGGTTCCAAATTAACATT 58.698 37.500 0.00 0.00 0.00 2.71
4696 5627 4.963318 TGAAGAGTGGATTGACTGACTT 57.037 40.909 0.00 0.00 0.00 3.01
4772 5713 1.958205 CCCAGAATCCAGCGCGATC 60.958 63.158 12.10 0.00 0.00 3.69
4781 5746 1.069978 GCTCAGCTCTACCCAGAATCC 59.930 57.143 0.00 0.00 0.00 3.01
4782 5747 2.038659 AGCTCAGCTCTACCCAGAATC 58.961 52.381 0.00 0.00 30.62 2.52
4783 5748 2.173126 AGCTCAGCTCTACCCAGAAT 57.827 50.000 0.00 0.00 30.62 2.40
4784 5749 2.660572 CTAGCTCAGCTCTACCCAGAA 58.339 52.381 0.00 0.00 40.44 3.02
4785 5750 1.133637 CCTAGCTCAGCTCTACCCAGA 60.134 57.143 0.00 0.00 40.44 3.86
4786 5751 1.327303 CCTAGCTCAGCTCTACCCAG 58.673 60.000 0.00 0.00 40.44 4.45
4787 5752 0.757188 GCCTAGCTCAGCTCTACCCA 60.757 60.000 0.00 0.00 40.44 4.51
4788 5753 0.469144 AGCCTAGCTCAGCTCTACCC 60.469 60.000 0.00 0.00 40.44 3.69
4789 5754 1.068434 CAAGCCTAGCTCAGCTCTACC 59.932 57.143 0.00 0.00 38.25 3.18
4790 5755 1.068434 CCAAGCCTAGCTCAGCTCTAC 59.932 57.143 0.00 0.00 38.25 2.59
4791 5756 1.063642 TCCAAGCCTAGCTCAGCTCTA 60.064 52.381 0.00 0.00 38.25 2.43
4792 5757 0.325110 TCCAAGCCTAGCTCAGCTCT 60.325 55.000 0.00 0.00 38.25 4.09
4793 5758 0.758123 ATCCAAGCCTAGCTCAGCTC 59.242 55.000 0.00 0.00 38.25 4.09
4794 5759 0.469070 CATCCAAGCCTAGCTCAGCT 59.531 55.000 3.60 3.60 38.25 4.24
4795 5760 0.534652 CCATCCAAGCCTAGCTCAGC 60.535 60.000 0.00 0.00 38.25 4.26
4796 5761 1.126488 TCCATCCAAGCCTAGCTCAG 58.874 55.000 0.00 0.00 38.25 3.35
4797 5762 1.583556 TTCCATCCAAGCCTAGCTCA 58.416 50.000 0.00 0.00 38.25 4.26
4798 5763 2.947127 ATTCCATCCAAGCCTAGCTC 57.053 50.000 0.00 0.00 38.25 4.09
4799 5764 3.677156 AAATTCCATCCAAGCCTAGCT 57.323 42.857 0.00 0.00 42.56 3.32
4800 5765 3.701040 TGAAAATTCCATCCAAGCCTAGC 59.299 43.478 0.00 0.00 0.00 3.42
4801 5766 7.361542 CGATATGAAAATTCCATCCAAGCCTAG 60.362 40.741 0.00 0.00 0.00 3.02
4802 5767 6.430925 CGATATGAAAATTCCATCCAAGCCTA 59.569 38.462 0.00 0.00 0.00 3.93
4824 5811 4.706962 AGCTTAAAAGGCTGGAAATTCGAT 59.293 37.500 0.00 0.00 38.73 3.59
4942 5948 4.724602 TGACGTCTCAGCCGCAGC 62.725 66.667 17.92 0.00 40.32 5.25
4943 5949 2.505777 CTGACGTCTCAGCCGCAG 60.506 66.667 17.92 0.00 37.72 5.18
4979 5985 8.802267 AGCCTGTATATTTTTGTCTTGCTTTAA 58.198 29.630 0.00 0.00 0.00 1.52
5041 9285 4.776743 CTTTGACAGATGTTTCCGAAGTG 58.223 43.478 0.00 0.00 0.00 3.16
5084 9328 2.309162 TGACACTCCTACTCCTACAGCT 59.691 50.000 0.00 0.00 0.00 4.24
5179 9717 9.804758 ACTTGCTAGTAAACTCATACAGTATTC 57.195 33.333 0.00 0.00 30.62 1.75
5184 9722 7.916450 GGAGTACTTGCTAGTAAACTCATACAG 59.084 40.741 23.58 0.00 39.88 2.74
5200 9738 0.606604 TGGACGAAGGGAGTACTTGC 59.393 55.000 0.00 0.00 0.00 4.01
5201 9739 2.168496 TCTGGACGAAGGGAGTACTTG 58.832 52.381 0.00 0.00 0.00 3.16
5203 9741 2.599408 TTCTGGACGAAGGGAGTACT 57.401 50.000 0.00 0.00 0.00 2.73
5204 9742 3.889520 ATTTCTGGACGAAGGGAGTAC 57.110 47.619 0.00 0.00 32.21 2.73
5206 9744 3.442076 AGTATTTCTGGACGAAGGGAGT 58.558 45.455 0.00 0.00 32.21 3.85
5207 9745 3.489398 CGAGTATTTCTGGACGAAGGGAG 60.489 52.174 0.00 0.00 32.21 4.30
5208 9746 2.426024 CGAGTATTTCTGGACGAAGGGA 59.574 50.000 0.00 0.00 32.21 4.20
5209 9747 2.165845 ACGAGTATTTCTGGACGAAGGG 59.834 50.000 0.00 0.00 32.21 3.95
5211 9749 3.099362 CGACGAGTATTTCTGGACGAAG 58.901 50.000 0.00 0.00 40.67 3.79
5212 9750 2.485426 ACGACGAGTATTTCTGGACGAA 59.515 45.455 0.00 0.00 40.67 3.85
5214 9752 2.539346 ACGACGAGTATTTCTGGACG 57.461 50.000 0.00 0.00 42.71 4.79
5215 9753 4.871993 TCTACGACGAGTATTTCTGGAC 57.128 45.455 0.00 0.00 34.34 4.02
5216 9754 5.885230 TTTCTACGACGAGTATTTCTGGA 57.115 39.130 0.00 0.00 34.34 3.86
5217 9755 5.459107 CCATTTCTACGACGAGTATTTCTGG 59.541 44.000 0.00 0.00 34.34 3.86
5218 9756 6.263344 TCCATTTCTACGACGAGTATTTCTG 58.737 40.000 0.00 0.00 34.34 3.02
5219 9757 6.446781 TCCATTTCTACGACGAGTATTTCT 57.553 37.500 0.00 0.00 34.34 2.52
5221 9759 7.709947 TGTATCCATTTCTACGACGAGTATTT 58.290 34.615 0.00 0.00 34.34 1.40
5222 9760 7.268199 TGTATCCATTTCTACGACGAGTATT 57.732 36.000 0.00 0.00 34.34 1.89
5223 9761 6.872628 TGTATCCATTTCTACGACGAGTAT 57.127 37.500 0.00 0.00 34.34 2.12
5225 9763 5.571784 TTGTATCCATTTCTACGACGAGT 57.428 39.130 0.00 0.00 0.00 4.18
5227 9765 5.751509 CCATTTGTATCCATTTCTACGACGA 59.248 40.000 0.00 0.00 0.00 4.20
5231 9769 7.496529 ACATCCATTTGTATCCATTTCTACG 57.503 36.000 0.00 0.00 0.00 3.51
5272 9810 7.554476 TGTCCGAGGAATAGATGTATCTAGATG 59.446 40.741 15.79 0.00 42.20 2.90
5275 9813 7.392113 ACTTGTCCGAGGAATAGATGTATCTAG 59.608 40.741 7.57 0.00 42.20 2.43
5276 9814 7.232188 ACTTGTCCGAGGAATAGATGTATCTA 58.768 38.462 4.22 4.22 43.00 1.98
5277 9815 6.071984 ACTTGTCCGAGGAATAGATGTATCT 58.928 40.000 8.25 0.00 40.86 1.98
5278 9816 6.334102 ACTTGTCCGAGGAATAGATGTATC 57.666 41.667 8.25 0.00 0.00 2.24
5280 9818 7.834881 AATACTTGTCCGAGGAATAGATGTA 57.165 36.000 8.25 1.80 0.00 2.29
5282 9820 7.710907 TGAAAATACTTGTCCGAGGAATAGATG 59.289 37.037 8.25 0.00 0.00 2.90
5285 9823 7.222999 GTCTGAAAATACTTGTCCGAGGAATAG 59.777 40.741 0.00 0.00 0.00 1.73
5288 9826 5.235516 GTCTGAAAATACTTGTCCGAGGAA 58.764 41.667 0.00 0.00 0.00 3.36
5289 9827 4.617530 CGTCTGAAAATACTTGTCCGAGGA 60.618 45.833 0.00 0.00 0.00 3.71
5290 9828 3.612860 CGTCTGAAAATACTTGTCCGAGG 59.387 47.826 0.00 0.00 0.00 4.63
5291 9829 3.612860 CCGTCTGAAAATACTTGTCCGAG 59.387 47.826 0.00 0.00 0.00 4.63
5293 9831 3.581755 TCCGTCTGAAAATACTTGTCCG 58.418 45.455 0.00 0.00 0.00 4.79
5294 9832 3.933332 CCTCCGTCTGAAAATACTTGTCC 59.067 47.826 0.00 0.00 0.00 4.02
5298 9929 3.838903 ACTCCCTCCGTCTGAAAATACTT 59.161 43.478 0.00 0.00 0.00 2.24
5299 9930 3.442076 ACTCCCTCCGTCTGAAAATACT 58.558 45.455 0.00 0.00 0.00 2.12
5303 9934 4.693042 TTTTACTCCCTCCGTCTGAAAA 57.307 40.909 0.00 0.00 0.00 2.29
5304 9935 4.693042 TTTTTACTCCCTCCGTCTGAAA 57.307 40.909 0.00 0.00 0.00 2.69
5339 9995 1.578583 GCTGATGGGCATTTTGATGC 58.421 50.000 2.87 2.87 46.27 3.91
5358 10014 1.746727 CTTCGAGGATGCTGTTCGCG 61.747 60.000 0.00 0.00 43.27 5.87
5359 10015 1.424493 CCTTCGAGGATGCTGTTCGC 61.424 60.000 0.00 0.00 37.67 4.70
5360 10016 1.424493 GCCTTCGAGGATGCTGTTCG 61.424 60.000 0.00 0.00 37.67 3.95
5361 10017 0.391661 TGCCTTCGAGGATGCTGTTC 60.392 55.000 0.00 0.00 37.67 3.18
5366 10022 2.203126 CCCTGCCTTCGAGGATGC 60.203 66.667 0.00 0.00 37.67 3.91
5375 10031 2.281761 CTTGCGTCACCCTGCCTT 60.282 61.111 0.00 0.00 0.00 4.35
5384 10040 4.560743 TGCACCTGGCTTGCGTCA 62.561 61.111 5.01 0.00 43.34 4.35
5388 10044 1.174712 TTCTTCTGCACCTGGCTTGC 61.175 55.000 2.51 2.51 45.15 4.01
5391 10047 1.074405 TCATTTCTTCTGCACCTGGCT 59.926 47.619 0.00 0.00 45.15 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.