AutoCloner

Multiple sequence alignment - TraesCS2D01G512800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G512800	chr2D	100.000	4364	0	0	928	5291	603923267	603927630	0.000000e+00	8059.0
1	TraesCS2D01G512800	chr2D	100.000	492	0	0	1	492	603922340	603922831	0.000000e+00	909.0
2	TraesCS2D01G512800	chr2D	84.919	431	42	10	3719	4138	603925473	603925891	1.060000e-111	414.0
3	TraesCS2D01G512800	chr2D	84.919	431	42	10	3134	3552	603926058	603926477	1.060000e-111	414.0
4	TraesCS2D01G512800	chr2B	93.821	4418	139	34	928	5291	734719740	734724077	0.000000e+00	6523.0
5	TraesCS2D01G512800	chr2B	93.883	1455	47	20	3846	5291	734738013	734739434	0.000000e+00	2156.0
6	TraesCS2D01G512800	chr2B	91.160	871	47	13	4170	5034	734726447	734727293	0.000000e+00	1155.0
7	TraesCS2D01G512800	chr2B	85.163	492	48	6	4546	5034	734755316	734755785	1.030000e-131	481.0
8	TraesCS2D01G512800	chr2B	86.493	422	41	9	3134	3552	734722533	734722941	2.910000e-122	449.0
9	TraesCS2D01G512800	chr2B	93.274	223	7	5	265	485	734719498	734719714	6.610000e-84	322.0
10	TraesCS2D01G512800	chr2B	86.087	115	6	3	68	172	734719393	734719507	1.200000e-21	115.0
11	TraesCS2D01G512800	chr2B	95.122	41	2	0	5027	5067	734757356	734757396	1.230000e-06	65.8
12	TraesCS2D01G512800	chr2A	95.121	1824	55	5	1018	2809	735964772	735966593	0.000000e+00	2844.0
13	TraesCS2D01G512800	chr2A	94.884	1505	33	14	3272	4754	735967425	735968907	0.000000e+00	2313.0
14	TraesCS2D01G512800	chr2A	91.483	317	17	2	2960	3275	735966814	735967121	1.360000e-115	427.0
15	TraesCS2D01G512800	chr2A	83.105	438	41	14	3134	3552	735967872	735968295	8.370000e-98	368.0
16	TraesCS2D01G512800	chr2A	82.534	292	30	8	3857	4138	735967425	735967705	2.460000e-58	237.0
17	TraesCS2D01G512800	chr2A	83.764	271	13	17	98	366	735964195	735964436	1.480000e-55	228.0
18	TraesCS2D01G512800	chr2A	89.313	131	5	7	2810	2932	735966627	735966756	7.090000e-34	156.0
19	TraesCS2D01G512800	chr2A	86.525	141	17	2	3720	3859	735966981	735967120	2.550000e-33	154.0
20	TraesCS2D01G512800	chr2A	90.909	66	6	0	1	66	735964129	735964194	7.300000e-14	89.8
21	TraesCS2D01G512800	chr2A	89.091	55	4	2	5158	5212	736136841	736136789	3.420000e-07	67.6
22	TraesCS2D01G512800	chr6B	88.743	382	18	7	1535	1895	402446505	402446882	1.350000e-120	444.0
23	TraesCS2D01G512800	chr6B	81.707	82	13	2	4684	4764	707293579	707293659	3.420000e-07	67.6
24	TraesCS2D01G512800	chr4A	94.156	154	9	0	1535	1688	619858567	619858720	8.860000e-58	235.0
25	TraesCS2D01G512800	chr4A	95.349	86	1	2	1685	1770	619865865	619865947	3.320000e-27	134.0
26	TraesCS2D01G512800	chr7D	93.182	44	1	2	4729	4772	43365401	43365360	4.420000e-06	63.9
27	TraesCS2D01G512800	chr5B	88.000	50	5	1	2841	2890	518957925	518957973	2.060000e-04	58.4
28	TraesCS2D01G512800	chr3A	100.000	31	0	0	4727	4757	650431533	650431563	2.060000e-04	58.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G512800	chr2D	603922340	603927630	5290	False	2449.000000	8059	92.459500	1	5291	4	chr2D.!!$F1	5290
1	TraesCS2D01G512800	chr2B	734738013	734739434	1421	False	2156.000000	2156	93.883000	3846	5291	1	chr2B.!!$F1	1445
2	TraesCS2D01G512800	chr2B	734719393	734727293	7900	False	1712.800000	6523	90.167000	68	5291	5	chr2B.!!$F2	5223
3	TraesCS2D01G512800	chr2B	734755316	734757396	2080	False	273.400000	481	90.142500	4546	5067	2	chr2B.!!$F3	521
4	TraesCS2D01G512800	chr2A	735964129	735968907	4778	False	757.422222	2844	88.626444	1	4754	9	chr2A.!!$F1	4753

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
987	1002	0.030369	GTGTGTCGTCTCTGTTCGGT	59.970	55.0	0.00	0.00	4.69	F
2656	2700	0.034616	GTGAACAGACTCTGCCTGCT	59.965	55.0	5.92	34.37	4.24	F
3036	3151	0.526524	CGAGAGCCTCTTACGCAAGG	60.527	60.0	0.00	46.39	3.61	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
2704	2749	0.099968	TCTATACTGTGCACGTCCGC	59.900	55.000	13.13	0.00	5.54	R
3825	4255	4.749245	TTGAAGAAAGGAAGACGAATGC	57.251	40.909	0.00	0.00	3.56	R
4708	5166	2.342354	GCAACATAACTTGCAACATCGC	59.658	45.455	0.00	45.07	4.58	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
21	22	0.882474	AGGAAGACGACGACAAGAGG	59.118	55.000	0.00	0.00	0.00	3.69
28	29	1.531149	ACGACGACAAGAGGCAATTTG	59.469	47.619	0.00	0.00	0.00	2.32
29	30	1.798223	CGACGACAAGAGGCAATTTGA	59.202	47.619	0.00	0.00	0.00	2.69
66	67	1.821216	AAATTCAACGATCTGCCCGT	58.179	45.000	0.00	0.00	42.61	5.28
69	70	2.829043	TTCAACGATCTGCCCGTCGG	62.829	60.000	3.60	3.60	41.87	4.79
72	73	4.570663	CGATCTGCCCGTCGGTCC	62.571	72.222	11.06	1.15	34.39	4.46
81	82	4.796231	CGTCGGTCCGGCCAGAAG	62.796	72.222	10.96	0.00	36.97	2.85
168	182	3.399181	CTCCTTGGCCGGGCTACA	61.399	66.667	29.87	12.10	0.00	2.74
294	308	4.135153	CGCTCCACCTCACCCTCG	62.135	72.222	0.00	0.00	0.00	4.63
319	333	2.046507	CTCCACCACCAGCTGCTC	60.047	66.667	8.66	0.00	0.00	4.26
320	334	3.618780	CTCCACCACCAGCTGCTCC	62.619	68.421	8.66	0.00	0.00	4.70
321	335	3.957586	CCACCACCAGCTGCTCCA	61.958	66.667	8.66	0.00	0.00	3.86
322	336	2.359602	CACCACCAGCTGCTCCAG	60.360	66.667	8.66	0.00	34.12	3.86
367	382	0.593263	GCTGCTCATAATTGCGTGCC	60.593	55.000	0.00	0.00	0.00	5.01
390	405	1.302192	TCGTTGCTTTTCCCTCCCG	60.302	57.895	0.00	0.00	0.00	5.14
391	406	2.962569	GTTGCTTTTCCCTCCCGC	59.037	61.111	0.00	0.00	0.00	6.13
395	410	4.442454	CTTTTCCCTCCCGCCCCC	62.442	72.222	0.00	0.00	0.00	5.40
485	500	1.657556	CCGCTACTGCTCCTAGCTC	59.342	63.158	0.00	0.00	42.97	4.09
486	501	1.281353	CGCTACTGCTCCTAGCTCG	59.719	63.158	0.00	0.00	42.97	5.03
487	502	1.007849	GCTACTGCTCCTAGCTCGC	60.008	63.158	0.00	0.00	42.97	5.03
488	503	1.452145	GCTACTGCTCCTAGCTCGCT	61.452	60.000	0.00	0.00	42.97	4.93
490	505	0.820074	TACTGCTCCTAGCTCGCTCC	60.820	60.000	0.00	0.00	42.97	4.70
491	506	1.827789	CTGCTCCTAGCTCGCTCCT	60.828	63.158	0.00	0.00	42.97	3.69
979	994	1.587876	TGTGCGTGTGTGTCGTCTC	60.588	57.895	0.00	0.00	0.00	3.36
987	1002	0.030369	GTGTGTCGTCTCTGTTCGGT	59.970	55.000	0.00	0.00	0.00	4.69
989	1004	0.725118	GTGTCGTCTCTGTTCGGTCG	60.725	60.000	0.00	0.00	0.00	4.79
1257	1272	1.112113	CCGCCACCATCACTACTACT	58.888	55.000	0.00	0.00	0.00	2.57
1260	1275	2.950309	CGCCACCATCACTACTACTACT	59.050	50.000	0.00	0.00	0.00	2.57
1263	1278	4.024218	GCCACCATCACTACTACTACTACG	60.024	50.000	0.00	0.00	0.00	3.51
1315	1330	3.222855	CTGAGAGCGAGGCCGGAT	61.223	66.667	5.05	0.00	36.06	4.18
1792	1815	0.527817	CCCGTATCCTCGCTCACAAC	60.528	60.000	0.00	0.00	0.00	3.32
2317	2340	2.746375	CCCGCATGAGTAAGCCCCT	61.746	63.158	0.00	0.00	0.00	4.79
2327	2350	3.714078	TAAGCCCCTGATCCCCGCT	62.714	63.158	0.00	0.00	0.00	5.52
2598	2642	2.967599	GAATCAATTCCTGTTGGCCC	57.032	50.000	0.00	0.00	0.00	5.80
2656	2700	0.034616	GTGAACAGACTCTGCCTGCT	59.965	55.000	5.92	0.00	34.37	4.24
2686	2730	6.351371	CCTGCCCTTGGTATAGTAGTATCATG	60.351	46.154	0.00	0.00	0.00	3.07
2696	2740	8.772705	GGTATAGTAGTATCATGCGGAGTATAC	58.227	40.741	0.00	0.00	0.00	1.47
2699	2743	9.767228	ATAGTAGTATCATGCGGAGTATACTAG	57.233	37.037	16.48	4.46	37.82	2.57
2704	2749	3.253432	TCATGCGGAGTATACTAGCACAG	59.747	47.826	27.47	23.24	40.63	3.66
2710	2755	1.602851	AGTATACTAGCACAGCGGACG	59.397	52.381	2.75	0.00	0.00	4.79
2767	2812	1.885887	CCAGTTTCCTGCGGATTTCAA	59.114	47.619	0.00	0.00	37.38	2.69
2864	2943	1.666553	GAACGGTCACGGACATGCA	60.667	57.895	0.00	0.00	46.48	3.96
2915	2999	3.474570	CTAGCCTTGGCCGCCTCT	61.475	66.667	11.61	5.26	0.00	3.69
2942	3048	2.757313	CCCATAGCAGGCTAGAGCT	58.243	57.895	7.14	3.18	44.55	4.09
2985	3100	1.406180	CATCCATTGCGATGCTTCCAA	59.594	47.619	8.58	6.15	33.69	3.53
3025	3140	3.041627	GAAGCGACGACGAGAGCCT	62.042	63.158	12.29	0.00	42.66	4.58
3036	3151	0.526524	CGAGAGCCTCTTACGCAAGG	60.527	60.000	0.00	0.00	46.39	3.61
3132	3247	6.438259	TTCCTTTTTGAACACGTACAATCA	57.562	33.333	0.00	0.00	0.00	2.57
3136	3251	8.286800	TCCTTTTTGAACACGTACAATCATAAG	58.713	33.333	0.00	0.00	0.00	1.73
3165	3281	1.743995	CCCCCATCGTTTCGTGACC	60.744	63.158	0.00	0.00	0.00	4.02
3269	3385	8.292444	TCATCTTCCTTTCTTCAAAAGACAAA	57.708	30.769	0.00	0.00	37.23	2.83
3311	3734	4.529897	TCACCTAATCTAGCCGTCTTACA	58.470	43.478	0.00	0.00	0.00	2.41
3352	3776	5.625150	GTGAGCCAGGTCATCCTAAATATT	58.375	41.667	2.46	0.00	43.07	1.28
3359	3783	7.112779	CCAGGTCATCCTAAATATTCATACCC	58.887	42.308	0.00	0.00	43.07	3.69
3574	4004	1.001293	TCGCTGTTCTGATCTTGCAGT	59.999	47.619	0.00	0.00	37.20	4.40
3597	4027	2.240160	TGGACACCCATGGTAATGTACC	59.760	50.000	16.72	15.89	42.68	3.34
3825	4255	5.661056	TCAGCAAAGGGGATATACTATCG	57.339	43.478	0.00	0.00	0.00	2.92
3831	4261	4.920640	AGGGGATATACTATCGCATTCG	57.079	45.455	11.73	0.00	33.29	3.34
3939	4384	5.991606	TGAGCCAGGTCATTCTAAATATTCG	59.008	40.000	0.00	0.00	0.00	3.34
3942	4387	7.680730	AGCCAGGTCATTCTAAATATTCGTAT	58.319	34.615	0.00	0.00	0.00	3.06
4571	5023	3.618690	AGAGTTCTCTTAGGCGCATTT	57.381	42.857	10.83	0.00	0.00	2.32
4702	5160	7.989947	TCTAATACTCCCTTTGTCCTACAAT	57.010	36.000	0.00	0.00	38.00	2.71
4705	5163	2.375174	ACTCCCTTTGTCCTACAATGCA	59.625	45.455	0.00	0.00	38.00	3.96
4706	5164	3.181434	ACTCCCTTTGTCCTACAATGCAA	60.181	43.478	0.00	0.00	38.00	4.08
4707	5165	3.420893	TCCCTTTGTCCTACAATGCAAG	58.579	45.455	0.00	0.00	38.00	4.01
4708	5166	2.493278	CCCTTTGTCCTACAATGCAAGG	59.507	50.000	0.00	0.00	38.00	3.61
4709	5167	2.094545	CCTTTGTCCTACAATGCAAGGC	60.095	50.000	0.00	0.00	38.00	4.35
4713	5171	1.331756	GTCCTACAATGCAAGGCGATG	59.668	52.381	0.00	0.00	32.55	3.84
4763	5221	5.316987	GTCTTATGTTATGGGATGGAAGGG	58.683	45.833	0.00	0.00	0.00	3.95
4770	5228	3.674358	ATGGGATGGAAGGGGTACTAT	57.326	47.619	0.00	0.00	0.00	2.12
4778	5236	7.184022	GGGATGGAAGGGGTACTATATACATTT	59.816	40.741	0.00	0.00	0.00	2.32
5060	7099	7.808856	GTCTCGTGATGTAGGATAGGAATAAAC	59.191	40.741	0.00	0.00	0.00	2.01
5141	7180	1.897560	CCTTGTCCTCCACACTTTCC	58.102	55.000	0.00	0.00	33.41	3.13
5179	7218	8.250332	GGACTTTGGAGCAATTTCATGTAAATA	58.750	33.333	0.00	0.00	36.76	1.40

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
5	6	0.387929	TTGCCTCTTGTCGTCGTCTT	59.612	50.000	0.00	0.00	0.00	3.01
9	10	1.798223	TCAAATTGCCTCTTGTCGTCG	59.202	47.619	0.00	0.00	0.00	5.12
16	17	0.244721	GCGGCTTCAAATTGCCTCTT	59.755	50.000	3.32	0.00	46.42	2.85
21	22	2.448477	CCAAGCGGCTTCAAATTGC	58.552	52.632	13.24	0.00	0.00	3.56
150	164	4.176752	GTAGCCCGGCCAAGGAGG	62.177	72.222	13.08	0.00	41.84	4.30
165	179	2.048597	CGTCCGCTTGTGGCTGTA	60.049	61.111	0.00	0.00	39.13	2.74
168	182	4.379243	CCTCGTCCGCTTGTGGCT	62.379	66.667	0.00	0.00	39.13	4.75
248	262	2.202479	GCGAGTTCGGCAATTGGC	60.202	61.111	21.45	21.45	43.74	4.52
276	290	3.775654	GAGGGTGAGGTGGAGCGG	61.776	72.222	0.00	0.00	0.00	5.52
294	308	2.044946	GGTGGTGGAGTGGATGGC	60.045	66.667	0.00	0.00	0.00	4.40
323	337	3.256716	TAAACAAAAGGCGCCGCGG	62.257	57.895	24.05	24.05	0.00	6.46
367	382	2.127383	GGAAAAGCAACGACGCGG	60.127	61.111	12.47	0.00	36.85	6.46
426	441	3.075148	CGAGTGATATAAGAGAGGCGGA	58.925	50.000	0.00	0.00	0.00	5.54
939	954	2.964978	GCGTAGGTGTACCACGGT	59.035	61.111	19.75	0.00	39.32	4.83
965	980	1.121240	GAACAGAGACGACACACACG	58.879	55.000	0.00	0.00	0.00	4.49
966	981	1.121240	CGAACAGAGACGACACACAC	58.879	55.000	0.00	0.00	0.00	3.82
967	982	0.030235	CCGAACAGAGACGACACACA	59.970	55.000	0.00	0.00	0.00	3.72
968	983	0.030369	ACCGAACAGAGACGACACAC	59.970	55.000	0.00	0.00	0.00	3.82
969	984	0.309922	GACCGAACAGAGACGACACA	59.690	55.000	0.00	0.00	0.00	3.72
970	985	0.725118	CGACCGAACAGAGACGACAC	60.725	60.000	0.00	0.00	0.00	3.67
989	1004	2.964389	GCTTCATCTCGCCGGAGC	60.964	66.667	5.05	0.00	40.26	4.70
1131	1146	4.117661	AGGAAGACGACGAGGCGC	62.118	66.667	0.00	0.00	33.86	6.53
1257	1272	1.243342	CGGTGGTGGTGGTCGTAGTA	61.243	60.000	0.00	0.00	0.00	1.82
1260	1275	2.521465	ACGGTGGTGGTGGTCGTA	60.521	61.111	0.00	0.00	32.03	3.43
1263	1278	2.280592	GTGACGGTGGTGGTGGTC	60.281	66.667	0.00	0.00	0.00	4.02
1314	1329	4.634703	TGGTGGTGCGCGTTGGAT	62.635	61.111	8.43	0.00	0.00	3.41
1792	1815	4.002982	TGAAATTGGTCGACAGATCCAAG	58.997	43.478	18.91	0.00	39.27	3.61
1930	1953	4.424711	TCGCCCAGAATGCCCACC	62.425	66.667	0.00	0.00	31.97	4.61
2023	2046	2.441164	AGCAGCGTCTCCTCCGAT	60.441	61.111	0.00	0.00	0.00	4.18
2317	2340	2.768344	GGGAGGAAGCGGGGATCA	60.768	66.667	0.00	0.00	0.00	2.92
2327	2350	1.901464	GCAAGCAAACGGGGAGGAA	60.901	57.895	0.00	0.00	0.00	3.36
2519	2563	3.585990	GAACGCCATGGCCATCCG	61.586	66.667	30.79	25.77	37.98	4.18
2598	2642	2.807895	CGGCCGTCACGTGGTTAG	60.808	66.667	19.50	3.58	0.00	2.34
2656	2700	0.327095	TATACCAAGGGCAGGGCAGA	60.327	55.000	0.00	0.00	0.00	4.26
2686	2730	1.663445	CGCTGTGCTAGTATACTCCGC	60.663	57.143	9.12	13.62	0.00	5.54
2704	2749	0.099968	TCTATACTGTGCACGTCCGC	59.900	55.000	13.13	0.00	0.00	5.54
2787	2832	1.817357	CTTGCAAGATCAGGACAGCA	58.183	50.000	22.31	0.00	0.00	4.41
2864	2943	3.687321	ATGCAAGCGGACGGCATCT	62.687	57.895	7.81	0.00	44.41	2.90
2915	2999	1.930251	CCTGCTATGGGCTAGAGCTA	58.070	55.000	18.32	4.49	43.96	3.32
2985	3100	0.889186	CTGCTTACGGTTGGTGGCTT	60.889	55.000	0.00	0.00	32.44	4.35
3025	3140	2.577059	CTCCGGCCTTGCGTAAGA	59.423	61.111	15.38	0.00	43.02	2.10
3047	3162	1.154205	CGATGCGTCTTGGATGGTCC	61.154	60.000	4.05	0.00	36.96	4.46
3132	3247	4.461198	GATGGGGGAAACGACATTCTTAT	58.539	43.478	0.00	0.00	0.00	1.73
3136	3251	1.014352	CGATGGGGGAAACGACATTC	58.986	55.000	0.00	0.00	0.00	2.67
3311	3734	4.671766	GCTCACGTTTCTTTGACACAAAGT	60.672	41.667	19.09	3.20	0.00	2.66
3352	3776	5.163385	ACGTTATTCGAAAGGATGGGTATGA	60.163	40.000	0.00	0.00	42.86	2.15
3359	3783	6.598753	AATGGTACGTTATTCGAAAGGATG	57.401	37.500	0.00	0.00	42.86	3.51
3825	4255	4.749245	TTGAAGAAAGGAAGACGAATGC	57.251	40.909	0.00	0.00	0.00	3.56
3831	4261	8.932945	AAATTGTCTTTTGAAGAAAGGAAGAC	57.067	30.769	7.41	7.41	43.90	3.01
3970	4415	8.554490	AGAGGTTTCATCACTATAACCAGTAT	57.446	34.615	0.00	0.00	41.93	2.12
3971	4416	7.973048	AGAGGTTTCATCACTATAACCAGTA	57.027	36.000	0.00	0.00	41.93	2.74
3972	4417	6.875972	AGAGGTTTCATCACTATAACCAGT	57.124	37.500	0.00	0.00	41.93	4.00
3973	4418	7.331026	TCAAGAGGTTTCATCACTATAACCAG	58.669	38.462	0.00	0.00	41.93	4.00
3974	4419	7.252612	TCAAGAGGTTTCATCACTATAACCA	57.747	36.000	0.00	0.00	41.93	3.67
3975	4420	8.451748	GTTTCAAGAGGTTTCATCACTATAACC	58.548	37.037	0.00	0.00	40.22	2.85
3976	4421	8.451748	GGTTTCAAGAGGTTTCATCACTATAAC	58.548	37.037	0.00	0.00	0.00	1.89
3977	4422	7.610305	GGGTTTCAAGAGGTTTCATCACTATAA	59.390	37.037	0.00	0.00	0.00	0.98
3978	4423	7.110155	GGGTTTCAAGAGGTTTCATCACTATA	58.890	38.462	0.00	0.00	0.00	1.31
3979	4424	5.946377	GGGTTTCAAGAGGTTTCATCACTAT	59.054	40.000	0.00	0.00	0.00	2.12
4571	5023	7.491372	CAGCTCTGACCTATATTACACGAAAAA	59.509	37.037	0.00	0.00	0.00	1.94
4705	5163	2.819608	ACATAACTTGCAACATCGCCTT	59.180	40.909	0.00	0.00	0.00	4.35
4706	5164	2.436417	ACATAACTTGCAACATCGCCT	58.564	42.857	0.00	0.00	0.00	5.52
4707	5165	2.916716	CAACATAACTTGCAACATCGCC	59.083	45.455	0.00	0.00	0.00	5.54
4708	5166	2.342354	GCAACATAACTTGCAACATCGC	59.658	45.455	0.00	0.00	45.07	4.58
4788	5246	6.708054	CAGATCGTTTGCCTCCTCTTTTATAT	59.292	38.462	0.00	0.00	0.00	0.86
4790	5248	4.878397	CAGATCGTTTGCCTCCTCTTTTAT	59.122	41.667	0.00	0.00	0.00	1.40
4792	5250	3.077359	CAGATCGTTTGCCTCCTCTTTT	58.923	45.455	0.00	0.00	0.00	2.27
4807	5265	3.624861	ACTAATGAAAAGCAGGCAGATCG	59.375	43.478	0.00	0.00	0.00	3.69
4912	5371	6.641169	AAACTTCCTCAGAAAATTCCTGAC	57.359	37.500	6.45	0.00	35.89	3.51
5060	7099	8.475331	AGATTAAGGTGCGTATAAATAATCCG	57.525	34.615	0.00	0.00	31.73	4.18
5141	7180	4.216472	GCTCCAAAGTCCAAACTAAGAAGG	59.784	45.833	0.00	0.00	33.48	3.46
5179	7218	2.309755	TGAGGCATTGGAGGAGAACAAT	59.690	45.455	0.00	0.00	37.78	2.71
5223	7262	1.456296	TGCAGCTCCAACATGTGATC	58.544	50.000	0.00	0.00	0.00	2.92
5224	7263	2.022195	GATGCAGCTCCAACATGTGAT	58.978	47.619	0.00	0.00	0.00	3.06
5225	7264	1.003928	AGATGCAGCTCCAACATGTGA	59.996	47.619	0.00	0.00	0.00	3.58

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.