AutoCloner

Multiple sequence alignment - TraesCS2D01G512500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G512500	chr2D	100.000	2935	0	0	1	2935	603661486	603658552	0.000000e+00	5421.0
1	TraesCS2D01G512500	chr2D	88.293	615	65	5	48	660	611164951	611164342	0.000000e+00	730.0
2	TraesCS2D01G512500	chr2A	93.354	2934	134	29	27	2920	735823317	735820405	0.000000e+00	4281.0
3	TraesCS2D01G512500	chr2A	100.000	31	0	0	1	31	735849724	735849694	1.140000e-04	58.4
4	TraesCS2D01G512500	chr2B	93.132	597	34	5	1246	1835	734216477	734215881	0.000000e+00	869.0
5	TraesCS2D01G512500	chr2B	93.075	361	15	2	901	1251	734221480	734221120	1.210000e-143	520.0
6	TraesCS2D01G512500	chr4A	88.000	625	63	5	44	660	690100881	690100261	0.000000e+00	728.0
7	TraesCS2D01G512500	chr4A	84.567	635	82	10	45	669	674361784	674361156	1.490000e-172	616.0
8	TraesCS2D01G512500	chr6D	87.220	626	65	8	44	660	24828016	24828635	0.000000e+00	699.0
9	TraesCS2D01G512500	chr7B	85.714	623	72	8	44	655	384765005	384764389	2.470000e-180	641.0
10	TraesCS2D01G512500	chr6B	86.308	577	73	4	79	653	713474487	713473915	8.930000e-175	623.0
11	TraesCS2D01G512500	chr7A	84.462	650	74	16	44	671	5855817	5855173	1.490000e-172	616.0
12	TraesCS2D01G512500	chr3D	83.546	626	78	19	41	653	525920046	525920659	1.980000e-156	562.0
13	TraesCS2D01G512500	chr3D	81.069	692	103	16	1071	1754	558085315	558084644	7.200000e-146	527.0
14	TraesCS2D01G512500	chr3D	79.258	593	108	13	1173	1760	558218147	558217565	1.640000e-107	399.0
15	TraesCS2D01G512500	chr3D	82.743	226	37	2	1530	1754	558014265	558014041	1.780000e-47	200.0
16	TraesCS2D01G512500	chr3A	81.024	664	106	10	1100	1754	693938570	693937918	7.260000e-141	510.0
17	TraesCS2D01G512500	chr3A	79.884	691	110	15	1071	1754	694017392	694016724	2.050000e-131	479.0
18	TraesCS2D01G512500	chr3A	78.583	593	112	13	1173	1760	694092792	694092210	7.680000e-101	377.0
19	TraesCS2D01G512500	chr3B	79.827	694	111	17	1071	1754	740866516	740865842	2.050000e-131	479.0
20	TraesCS2D01G512500	chr3B	79.089	593	109	13	1173	1760	740885687	740885105	7.620000e-106	394.0
21	TraesCS2D01G512500	chr5A	73.412	425	88	18	2350	2760	350235757	350235344	5.100000e-28	135.0
22	TraesCS2D01G512500	chr7D	90.196	51	4	1	2103	2152	140292767	140292817	6.790000e-07	65.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G512500	chr2D	603658552	603661486	2934	True	5421	5421	100.000	1	2935	1	chr2D.!!$R1	2934
1	TraesCS2D01G512500	chr2D	611164342	611164951	609	True	730	730	88.293	48	660	1	chr2D.!!$R2	612
2	TraesCS2D01G512500	chr2A	735820405	735823317	2912	True	4281	4281	93.354	27	2920	1	chr2A.!!$R1	2893
3	TraesCS2D01G512500	chr2B	734215881	734216477	596	True	869	869	93.132	1246	1835	1	chr2B.!!$R1	589
4	TraesCS2D01G512500	chr4A	690100261	690100881	620	True	728	728	88.000	44	660	1	chr4A.!!$R2	616
5	TraesCS2D01G512500	chr4A	674361156	674361784	628	True	616	616	84.567	45	669	1	chr4A.!!$R1	624
6	TraesCS2D01G512500	chr6D	24828016	24828635	619	False	699	699	87.220	44	660	1	chr6D.!!$F1	616
7	TraesCS2D01G512500	chr7B	384764389	384765005	616	True	641	641	85.714	44	655	1	chr7B.!!$R1	611
8	TraesCS2D01G512500	chr6B	713473915	713474487	572	True	623	623	86.308	79	653	1	chr6B.!!$R1	574
9	TraesCS2D01G512500	chr7A	5855173	5855817	644	True	616	616	84.462	44	671	1	chr7A.!!$R1	627
10	TraesCS2D01G512500	chr3D	525920046	525920659	613	False	562	562	83.546	41	653	1	chr3D.!!$F1	612
11	TraesCS2D01G512500	chr3D	558084644	558085315	671	True	527	527	81.069	1071	1754	1	chr3D.!!$R2	683
12	TraesCS2D01G512500	chr3D	558217565	558218147	582	True	399	399	79.258	1173	1760	1	chr3D.!!$R3	587
13	TraesCS2D01G512500	chr3A	693937918	693938570	652	True	510	510	81.024	1100	1754	1	chr3A.!!$R1	654
14	TraesCS2D01G512500	chr3A	694016724	694017392	668	True	479	479	79.884	1071	1754	1	chr3A.!!$R2	683
15	TraesCS2D01G512500	chr3A	694092210	694092792	582	True	377	377	78.583	1173	1760	1	chr3A.!!$R3	587
16	TraesCS2D01G512500	chr3B	740865842	740866516	674	True	479	479	79.827	1071	1754	1	chr3B.!!$R1	683
17	TraesCS2D01G512500	chr3B	740885105	740885687	582	True	394	394	79.089	1173	1760	1	chr3B.!!$R2	587

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
473	519	0.109226	GGCTTAGCACGACGACTTCT	60.109	55.0	6.53	0.0	0.0	2.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2432	2538	0.620556	ATGAGGATGGGTGTGTGGAC	59.379	55.0	0.0	0.0	0.0	4.02	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
24	25	7.420184	AGTCAAACAAAACCACAAGAAAAAG	57.580	32.000	0.00	0.00	0.00	2.27
25	26	6.426633	AGTCAAACAAAACCACAAGAAAAAGG	59.573	34.615	0.00	0.00	0.00	3.11
168	187	3.797353	GCCCTTGCCGATGGGAGA	61.797	66.667	0.00	0.00	46.15	3.71
220	239	4.724279	AATTGTTAGGGTCTGTGTCCTT	57.276	40.909	0.00	0.00	34.75	3.36
265	284	5.241728	GCGGCTCCCTGAAAATAGAATAAAT	59.758	40.000	0.00	0.00	0.00	1.40
296	315	2.586450	TAGCCCCCGTTCCGGTGATA	62.586	60.000	0.00	0.00	46.80	2.15
316	335	1.582968	GTCTAGCGTCGTTGGTGGA	59.417	57.895	0.00	0.00	0.00	4.02
348	382	0.400213	TGTCTCCGGTGGATTTGCTT	59.600	50.000	0.00	0.00	0.00	3.91
364	398	0.992802	GCTTGGATCTGTTCGTCGTC	59.007	55.000	0.00	0.00	0.00	4.20
372	416	1.872952	TCTGTTCGTCGTCCGTCTTTA	59.127	47.619	0.00	0.00	37.94	1.85
378	422	4.418013	TCGTCGTCCGTCTTTATTTGTA	57.582	40.909	0.00	0.00	37.94	2.41
417	461	8.087750	GGATCCTTCTTATCTACACTCTTCATG	58.912	40.741	3.84	0.00	0.00	3.07
422	466	1.847328	TCTACACTCTTCATGGGCGA	58.153	50.000	0.00	0.00	0.00	5.54
448	493	1.135228	GTTGTTCTGGTGCGTTGGTTT	60.135	47.619	0.00	0.00	0.00	3.27
473	519	0.109226	GGCTTAGCACGACGACTTCT	60.109	55.000	6.53	0.00	0.00	2.85
586	632	2.098770	GTCGCTAGGTGGTCTACGAATT	59.901	50.000	0.00	0.00	35.22	2.17
775	822	8.134261	GGAGAGAAGGATCAAGCAATAAAAATC	58.866	37.037	0.00	0.00	0.00	2.17
809	856	7.761038	ACATCTTTTTGTTTTAGGGGACTAG	57.239	36.000	0.00	0.00	45.45	2.57
867	914	1.545582	TCTATTTCGTTCCGGTCCGTT	59.454	47.619	11.06	0.00	0.00	4.44
911	966	2.030401	CGCGTTCCACCGGAATTCA	61.030	57.895	9.46	0.00	44.04	2.57
979	1034	0.320374	GGCCTACATATAGCGCACCA	59.680	55.000	11.47	0.00	0.00	4.17
992	1047	2.398554	GCACCACACGCCGATTGAT	61.399	57.895	0.00	0.00	0.00	2.57
1034	1089	0.968901	TGCACGTTCGGATCCTAGGT	60.969	55.000	10.75	6.71	0.00	3.08
1491	1562	0.374758	TTCTGCTTCGCGATGAATGC	59.625	50.000	24.47	16.46	35.63	3.56
1702	1782	0.968901	AGAAGACGACGTGCCCCATA	60.969	55.000	4.58	0.00	0.00	2.74
1742	1824	1.454847	TGTGCCCTGCGGAAGTTTT	60.455	52.632	0.00	0.00	0.00	2.43
1768	1850	2.097142	CCTGTAGAGTGTAGTGTACCGC	59.903	54.545	0.00	0.00	0.00	5.68
1813	1900	2.562298	CCCAGCAGCTTTGTGGATAAAA	59.438	45.455	7.24	0.00	32.60	1.52
1843	1930	8.668353	TCGTGTACATAACTAGTAGTAGTTTGG	58.332	37.037	24.40	18.87	45.62	3.28
1844	1931	8.668353	CGTGTACATAACTAGTAGTAGTTTGGA	58.332	37.037	24.40	16.70	45.62	3.53
1857	1944	9.988815	AGTAGTAGTTTGGATATAAGCTTCATG	57.011	33.333	0.00	0.00	0.00	3.07
1895	1993	4.347453	GGTTGCTGCTTGTGCCGG	62.347	66.667	0.00	0.00	38.71	6.13
1915	2013	2.994578	GGACTTCGCTGTCTACCTTTTC	59.005	50.000	7.38	0.00	37.16	2.29
2023	2126	6.095720	ACCGGTTAGTTTTCTTTGTTCAATGA	59.904	34.615	0.00	0.00	0.00	2.57
2131	2234	2.032117	CACTAGCAAACATGTTCGTGCA	60.032	45.455	28.17	17.11	39.50	4.57
2171	2274	2.849880	TAAATGCTCCAAGCGCAATC	57.150	45.000	11.47	0.00	46.26	2.67
2237	2341	4.216257	ACATATTGCCTCACTTGTGTTGTC	59.784	41.667	0.46	0.00	0.00	3.18
2248	2352	1.809133	TGTGTTGTCCTTACCCTCCA	58.191	50.000	0.00	0.00	0.00	3.86
2293	2397	1.153647	CGCGATGTCCACCTAAGCA	60.154	57.895	0.00	0.00	0.00	3.91
2299	2403	3.555956	CGATGTCCACCTAAGCACAATAC	59.444	47.826	0.00	0.00	0.00	1.89
2398	2504	2.225382	TATCCCTGAGTTGGACGTGA	57.775	50.000	0.00	0.00	33.94	4.35
2411	2517	1.336517	GGACGTGACGATTGTCCTTCA	60.337	52.381	13.70	0.00	46.86	3.02
2432	2538	4.405680	TCATGAGATACAACCTACACCCAG	59.594	45.833	0.00	0.00	0.00	4.45
2443	2549	1.412453	TACACCCAGTCCACACACCC	61.412	60.000	0.00	0.00	0.00	4.61
2453	2559	2.439507	GTCCACACACCCATCCTCATAT	59.560	50.000	0.00	0.00	0.00	1.78
2757	2864	7.621832	TTTCAAAAGTCAGATACGCATTTTG	57.378	32.000	0.00	0.00	38.40	2.44
2758	2865	6.552859	TCAAAAGTCAGATACGCATTTTGA	57.447	33.333	6.77	6.77	41.66	2.69
2775	2882	5.613358	TTTTGAACGGCACAAAAACAATT	57.387	30.435	11.89	0.00	41.90	2.32
2855	2962	0.905357	AGCATGAGTGGTCAGGGTAC	59.095	55.000	0.00	0.00	43.10	3.34
2920	3027	3.649981	AGAGCTATTCATATGGTGCCTGT	59.350	43.478	2.13	0.00	0.00	4.00
2921	3028	3.999663	GAGCTATTCATATGGTGCCTGTC	59.000	47.826	2.13	0.00	0.00	3.51
2922	3029	3.649981	AGCTATTCATATGGTGCCTGTCT	59.350	43.478	2.13	0.00	0.00	3.41
2923	3030	4.840680	AGCTATTCATATGGTGCCTGTCTA	59.159	41.667	2.13	0.00	0.00	2.59
2924	3031	5.046735	AGCTATTCATATGGTGCCTGTCTAG	60.047	44.000	2.13	0.00	0.00	2.43
2925	3032	5.279708	GCTATTCATATGGTGCCTGTCTAGT	60.280	44.000	2.13	0.00	0.00	2.57
2926	3033	5.636903	ATTCATATGGTGCCTGTCTAGTT	57.363	39.130	2.13	0.00	0.00	2.24
2927	3034	4.406648	TCATATGGTGCCTGTCTAGTTG	57.593	45.455	2.13	0.00	0.00	3.16
2928	3035	3.134623	TCATATGGTGCCTGTCTAGTTGG	59.865	47.826	2.13	0.00	0.00	3.77
2929	3036	1.362224	ATGGTGCCTGTCTAGTTGGT	58.638	50.000	0.00	0.00	0.00	3.67
2930	3037	1.136828	TGGTGCCTGTCTAGTTGGTT	58.863	50.000	0.00	0.00	0.00	3.67
2931	3038	1.202758	TGGTGCCTGTCTAGTTGGTTG	60.203	52.381	0.00	0.00	0.00	3.77
2932	3039	0.875059	GTGCCTGTCTAGTTGGTTGC	59.125	55.000	0.00	0.00	0.00	4.17
2933	3040	0.764890	TGCCTGTCTAGTTGGTTGCT	59.235	50.000	0.00	0.00	0.00	3.91
2934	3041	1.160137	GCCTGTCTAGTTGGTTGCTG	58.840	55.000	0.00	0.00	0.00	4.41

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	6.426633	CCTTTTTCTTGTGGTTTTGTTTGACT	59.573	34.615	0.00	0.00	0.00	3.41
1	2	6.348132	CCCTTTTTCTTGTGGTTTTGTTTGAC	60.348	38.462	0.00	0.00	0.00	3.18
2	3	5.703130	CCCTTTTTCTTGTGGTTTTGTTTGA	59.297	36.000	0.00	0.00	0.00	2.69
3	4	5.471797	ACCCTTTTTCTTGTGGTTTTGTTTG	59.528	36.000	0.00	0.00	0.00	2.93
4	5	5.471797	CACCCTTTTTCTTGTGGTTTTGTTT	59.528	36.000	0.00	0.00	0.00	2.83
5	6	5.000591	CACCCTTTTTCTTGTGGTTTTGTT	58.999	37.500	0.00	0.00	0.00	2.83
6	7	4.284746	TCACCCTTTTTCTTGTGGTTTTGT	59.715	37.500	0.00	0.00	0.00	2.83
7	8	4.826556	TCACCCTTTTTCTTGTGGTTTTG	58.173	39.130	0.00	0.00	0.00	2.44
8	9	4.622933	GCTCACCCTTTTTCTTGTGGTTTT	60.623	41.667	0.00	0.00	0.00	2.43
9	10	3.118775	GCTCACCCTTTTTCTTGTGGTTT	60.119	43.478	0.00	0.00	0.00	3.27
10	11	2.430694	GCTCACCCTTTTTCTTGTGGTT	59.569	45.455	0.00	0.00	0.00	3.67
11	12	2.031870	GCTCACCCTTTTTCTTGTGGT	58.968	47.619	0.00	0.00	0.00	4.16
12	13	2.031120	TGCTCACCCTTTTTCTTGTGG	58.969	47.619	0.00	0.00	0.00	4.17
13	14	3.799281	TTGCTCACCCTTTTTCTTGTG	57.201	42.857	0.00	0.00	0.00	3.33
14	15	3.132824	CCTTTGCTCACCCTTTTTCTTGT	59.867	43.478	0.00	0.00	0.00	3.16
15	16	3.493176	CCCTTTGCTCACCCTTTTTCTTG	60.493	47.826	0.00	0.00	0.00	3.02
16	17	2.700371	CCCTTTGCTCACCCTTTTTCTT	59.300	45.455	0.00	0.00	0.00	2.52
17	18	2.319844	CCCTTTGCTCACCCTTTTTCT	58.680	47.619	0.00	0.00	0.00	2.52
18	19	1.270305	GCCCTTTGCTCACCCTTTTTC	60.270	52.381	0.00	0.00	36.87	2.29
19	20	0.758734	GCCCTTTGCTCACCCTTTTT	59.241	50.000	0.00	0.00	36.87	1.94
20	21	0.398381	TGCCCTTTGCTCACCCTTTT	60.398	50.000	0.00	0.00	42.00	2.27
21	22	0.178924	ATGCCCTTTGCTCACCCTTT	60.179	50.000	0.00	0.00	42.00	3.11
22	23	0.178924	AATGCCCTTTGCTCACCCTT	60.179	50.000	0.00	0.00	42.00	3.95
23	24	0.901580	CAATGCCCTTTGCTCACCCT	60.902	55.000	0.00	0.00	42.00	4.34
24	25	1.593265	CAATGCCCTTTGCTCACCC	59.407	57.895	0.00	0.00	42.00	4.61
25	26	1.079612	GCAATGCCCTTTGCTCACC	60.080	57.895	10.53	0.00	46.66	4.02
168	187	6.231211	TGAAGAAAGATCTAAAAACGGAGCT	58.769	36.000	0.00	0.00	33.77	4.09
199	218	4.351111	AGAAGGACACAGACCCTAACAATT	59.649	41.667	0.00	0.00	31.36	2.32
200	219	3.910627	AGAAGGACACAGACCCTAACAAT	59.089	43.478	0.00	0.00	31.36	2.71
201	220	3.314693	AGAAGGACACAGACCCTAACAA	58.685	45.455	0.00	0.00	31.36	2.83
220	239	1.883732	CCGTCTCGCCTTCTTGAGA	59.116	57.895	0.00	0.00	38.85	3.27
305	324	2.241880	CCACACGTCCACCAACGAC	61.242	63.158	3.16	0.00	45.37	4.34
310	329	2.445085	ACCTCCACACGTCCACCA	60.445	61.111	0.00	0.00	0.00	4.17
316	335	1.740285	GAGACACACCTCCACACGT	59.260	57.895	0.00	0.00	0.00	4.49
364	398	6.594159	ACCTGAAGACATACAAATAAAGACGG	59.406	38.462	0.00	0.00	0.00	4.79
372	416	5.888161	GGATCCAACCTGAAGACATACAAAT	59.112	40.000	6.95	0.00	0.00	2.32
378	422	3.848975	AGAAGGATCCAACCTGAAGACAT	59.151	43.478	15.82	0.00	40.49	3.06
417	461	0.307760	CAGAACAACAACTGTCGCCC	59.692	55.000	0.00	0.00	37.23	6.13
422	466	0.732571	CGCACCAGAACAACAACTGT	59.267	50.000	0.00	0.00	41.27	3.55
448	493	0.179094	CGTCGTGCTAAGCCCCATAA	60.179	55.000	0.00	0.00	0.00	1.90
473	519	4.139786	ACCTTGTTGTAGTAGACAGTCGA	58.860	43.478	0.00	0.00	39.88	4.20
604	650	8.757789	CATGTTAGTACAACGAACACTAGAAAA	58.242	33.333	7.70	0.00	44.24	2.29
668	715	1.652947	TTCTGTACTGGGTTCCCCTC	58.347	55.000	5.34	0.00	45.70	4.30
671	718	2.235402	TCGAATTCTGTACTGGGTTCCC	59.765	50.000	3.52	0.12	0.00	3.97
673	720	5.235516	TCTTTCGAATTCTGTACTGGGTTC	58.764	41.667	0.00	4.45	0.00	3.62
674	721	5.223449	TCTTTCGAATTCTGTACTGGGTT	57.777	39.130	0.00	0.00	0.00	4.11
675	722	4.822026	CTCTTTCGAATTCTGTACTGGGT	58.178	43.478	0.00	0.00	0.00	4.51
676	723	3.619038	GCTCTTTCGAATTCTGTACTGGG	59.381	47.826	0.00	0.00	0.00	4.45
677	724	4.245660	TGCTCTTTCGAATTCTGTACTGG	58.754	43.478	0.00	0.00	0.00	4.00
678	725	5.177511	TGTTGCTCTTTCGAATTCTGTACTG	59.822	40.000	0.00	0.00	0.00	2.74
679	726	5.297547	TGTTGCTCTTTCGAATTCTGTACT	58.702	37.500	0.00	0.00	0.00	2.73
809	856	4.038162	AGACACAGACCGAAATAGATAGGC	59.962	45.833	0.00	0.00	0.00	3.93
867	914	4.671590	TCGTGCCTCCTGGACCGA	62.672	66.667	0.00	0.00	35.60	4.69
979	1034	0.796312	GTGTTGATCAATCGGCGTGT	59.204	50.000	12.12	0.00	0.00	4.49
992	1047	0.605319	GATTGCGGGTCTGGTGTTGA	60.605	55.000	0.00	0.00	0.00	3.18
1034	1089	2.886610	CATCGCCATTGCTGCCAA	59.113	55.556	0.00	0.00	34.43	4.52
1702	1782	1.445942	CCTAACGTCATCCCGGCAT	59.554	57.895	0.00	0.00	0.00	4.40
1742	1824	5.242393	GGTACACTACACTCTACAGGTTCAA	59.758	44.000	0.00	0.00	0.00	2.69
1768	1850	2.798680	CCCTCGAGTCATACGTTTCTG	58.201	52.381	12.31	0.00	0.00	3.02
1832	1919	9.765795	ACATGAAGCTTATATCCAAACTACTAC	57.234	33.333	0.00	0.00	0.00	2.73
1840	1927	7.933577	CAGGAGTTACATGAAGCTTATATCCAA	59.066	37.037	0.00	0.00	31.40	3.53
1841	1928	7.071196	ACAGGAGTTACATGAAGCTTATATCCA	59.929	37.037	0.00	0.00	34.19	3.41
1842	1929	7.445945	ACAGGAGTTACATGAAGCTTATATCC	58.554	38.462	0.00	0.00	34.19	2.59
1843	1930	8.894768	AACAGGAGTTACATGAAGCTTATATC	57.105	34.615	0.00	0.00	35.85	1.63
1844	1931	8.709308	AGAACAGGAGTTACATGAAGCTTATAT	58.291	33.333	0.00	0.00	38.30	0.86
1847	1934	6.360370	AGAACAGGAGTTACATGAAGCTTA	57.640	37.500	0.00	0.00	38.30	3.09
1848	1935	5.234466	AGAACAGGAGTTACATGAAGCTT	57.766	39.130	0.00	0.00	38.30	3.74
1849	1936	4.899352	AGAACAGGAGTTACATGAAGCT	57.101	40.909	0.00	0.00	38.30	3.74
1851	1938	4.938226	GGGAAGAACAGGAGTTACATGAAG	59.062	45.833	0.00	0.00	38.30	3.02
1853	1940	4.020218	CAGGGAAGAACAGGAGTTACATGA	60.020	45.833	0.00	0.00	38.30	3.07
1854	1941	4.256920	CAGGGAAGAACAGGAGTTACATG	58.743	47.826	0.00	0.00	38.30	3.21
1855	1942	3.910627	ACAGGGAAGAACAGGAGTTACAT	59.089	43.478	0.00	0.00	38.30	2.29
1856	1943	3.071023	CACAGGGAAGAACAGGAGTTACA	59.929	47.826	0.00	0.00	38.30	2.41
1857	1944	3.557264	CCACAGGGAAGAACAGGAGTTAC	60.557	52.174	0.00	0.00	35.26	2.50
1895	1993	3.915536	AGAAAAGGTAGACAGCGAAGTC	58.084	45.455	0.00	0.00	38.81	3.01
2055	2158	7.705325	GGAAAGAACCAGAAGTTAAAGGAAAAC	59.295	37.037	0.00	0.00	39.40	2.43
2126	2229	1.926510	TCTCTATCGTTGCAATGCACG	59.073	47.619	7.72	15.06	38.71	5.34
2171	2274	4.069304	TGTAAAAGGGTGGAATCGTTCTG	58.931	43.478	0.00	0.00	0.00	3.02
2217	2320	3.146066	GGACAACACAAGTGAGGCAATA	58.854	45.455	7.28	0.00	0.00	1.90
2237	2341	1.687123	CAGGACGTATGGAGGGTAAGG	59.313	57.143	0.00	0.00	0.00	2.69
2248	2352	1.549170	GTTGGTGAGGACAGGACGTAT	59.451	52.381	0.00	0.00	0.00	3.06
2293	2397	4.265904	TGACCATGTTCTGACGTATTGT	57.734	40.909	0.00	0.00	0.00	2.71
2299	2403	3.588955	TGAGATTGACCATGTTCTGACG	58.411	45.455	0.00	0.00	0.00	4.35
2385	2491	1.067974	ACAATCGTCACGTCCAACTCA	59.932	47.619	0.00	0.00	0.00	3.41
2398	2504	5.598416	TGTATCTCATGAAGGACAATCGT	57.402	39.130	0.00	0.00	0.00	3.73
2411	2517	4.362677	ACTGGGTGTAGGTTGTATCTCAT	58.637	43.478	0.00	0.00	0.00	2.90
2432	2538	0.620556	ATGAGGATGGGTGTGTGGAC	59.379	55.000	0.00	0.00	0.00	4.02
2443	2549	2.371179	AGTGACTGGGCATATGAGGATG	59.629	50.000	6.97	0.00	0.00	3.51
2453	2559	4.404073	ACACAATTTAAAAGTGACTGGGCA	59.596	37.500	23.11	0.00	37.05	5.36
2571	2677	6.037062	TGTTCCTGTGCTAAAACATATGATCG	59.963	38.462	10.38	0.00	0.00	3.69
2575	2681	6.372659	AGAGTGTTCCTGTGCTAAAACATATG	59.627	38.462	0.00	0.00	34.45	1.78
2645	2751	8.821030	GTTGACGTATTAAAACAATGTTCGTAC	58.179	33.333	7.98	1.99	0.00	3.67
2757	2864	6.534934	TGTTTTAATTGTTTTTGTGCCGTTC	58.465	32.000	0.00	0.00	0.00	3.95
2758	2865	6.481954	TGTTTTAATTGTTTTTGTGCCGTT	57.518	29.167	0.00	0.00	0.00	4.44

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.