Multiple sequence alignment - TraesCS2D01G512200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G512200 chr2D 100.000 5540 0 0 1 5540 603600462 603606001 0.000000e+00 10231.0
1 TraesCS2D01G512200 chr2D 93.691 2235 97 16 2126 4319 603639438 603641669 0.000000e+00 3306.0
2 TraesCS2D01G512200 chr2D 86.869 495 42 17 4325 4813 603641717 603642194 2.940000e-147 532.0
3 TraesCS2D01G512200 chr2B 95.861 3407 89 22 928 4319 734123910 734127279 0.000000e+00 5463.0
4 TraesCS2D01G512200 chr2B 95.416 1549 61 4 2590 4130 734187109 734188655 0.000000e+00 2459.0
5 TraesCS2D01G512200 chr2B 94.778 766 24 12 75 832 734123110 734123867 0.000000e+00 1179.0
6 TraesCS2D01G512200 chr2B 86.667 495 44 16 4325 4813 734188837 734189315 3.800000e-146 529.0
7 TraesCS2D01G512200 chr2B 92.857 308 11 5 4673 4975 734127559 734127860 2.370000e-118 436.0
8 TraesCS2D01G512200 chr2B 89.198 324 23 2 5015 5327 734127863 734128185 1.450000e-105 394.0
9 TraesCS2D01G512200 chr2B 93.388 242 11 3 4325 4561 734127327 734127568 2.460000e-93 353.0
10 TraesCS2D01G512200 chr2B 98.204 167 3 0 2349 2515 734186613 734186779 5.430000e-75 292.0
11 TraesCS2D01G512200 chr2B 94.643 168 7 1 2111 2278 734186449 734186614 5.510000e-65 259.0
12 TraesCS2D01G512200 chr2B 92.157 102 8 0 4218 4319 734188688 734188789 1.610000e-30 145.0
13 TraesCS2D01G512200 chr2B 98.413 63 1 0 1 63 23540036 23539974 1.630000e-20 111.0
14 TraesCS2D01G512200 chr2B 94.030 67 4 0 13 79 4099666 4099732 9.820000e-18 102.0
15 TraesCS2D01G512200 chr2B 100.000 34 0 0 4171 4204 734188656 734188689 4.630000e-06 63.9
16 TraesCS2D01G512200 chr2A 94.139 3344 159 24 1485 4813 735775997 735779318 0.000000e+00 5055.0
17 TraesCS2D01G512200 chr2A 86.156 1423 117 29 55 1447 735774613 735775985 0.000000e+00 1463.0
18 TraesCS2D01G512200 chr4A 91.049 324 27 2 3436 3758 327608361 327608683 2.370000e-118 436.0
19 TraesCS2D01G512200 chr4A 97.468 79 1 1 1 79 624364469 624364392 3.480000e-27 134.0
20 TraesCS2D01G512200 chr7D 90.175 285 28 0 3436 3720 410894541 410894825 6.780000e-99 372.0
21 TraesCS2D01G512200 chr7D 89.123 285 31 0 3436 3720 315166717 315166433 6.830000e-94 355.0
22 TraesCS2D01G512200 chr3D 89.123 285 29 1 3436 3720 25285311 25285593 2.460000e-93 353.0
23 TraesCS2D01G512200 chr7B 88.070 285 34 0 3436 3720 325472725 325473009 6.870000e-89 339.0
24 TraesCS2D01G512200 chr7B 98.630 73 1 0 1 73 62876375 62876303 4.500000e-26 130.0
25 TraesCS2D01G512200 chr7B 88.506 87 7 3 5445 5528 652398454 652398368 9.820000e-18 102.0
26 TraesCS2D01G512200 chr7B 88.462 52 5 1 5445 5495 339602888 339602939 1.670000e-05 62.1
27 TraesCS2D01G512200 chr5B 98.734 79 1 0 1 79 315300267 315300345 2.080000e-29 141.0
28 TraesCS2D01G512200 chr3B 97.468 79 2 0 1 79 199611166 199611244 9.680000e-28 135.0
29 TraesCS2D01G512200 chr3B 95.062 81 2 1 1 79 199555505 199555585 5.830000e-25 126.0
30 TraesCS2D01G512200 chr3B 100.000 30 0 0 548 577 812706470 812706499 7.750000e-04 56.5
31 TraesCS2D01G512200 chr1A 93.103 87 5 1 5443 5528 430607826 430607740 5.830000e-25 126.0
32 TraesCS2D01G512200 chr6B 88.119 101 10 2 5441 5540 158077438 158077537 9.750000e-23 119.0
33 TraesCS2D01G512200 chr6A 88.172 93 10 1 5449 5540 100073553 100073645 5.870000e-20 110.0
34 TraesCS2D01G512200 chr1B 94.030 67 3 1 14 79 684088323 684088389 3.530000e-17 100.0
35 TraesCS2D01G512200 chr4D 91.667 72 5 1 13 83 487753904 487753833 1.270000e-16 99.0
36 TraesCS2D01G512200 chr1D 84.146 82 8 4 5449 5528 84774996 84774918 2.140000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G512200 chr2D 603600462 603606001 5539 False 10231.00 10231 100.0000 1 5540 1 chr2D.!!$F1 5539
1 TraesCS2D01G512200 chr2D 603639438 603642194 2756 False 1919.00 3306 90.2800 2126 4813 2 chr2D.!!$F2 2687
2 TraesCS2D01G512200 chr2B 734123110 734128185 5075 False 1565.00 5463 93.2164 75 5327 5 chr2B.!!$F2 5252
3 TraesCS2D01G512200 chr2B 734186449 734189315 2866 False 624.65 2459 94.5145 2111 4813 6 chr2B.!!$F3 2702
4 TraesCS2D01G512200 chr2A 735774613 735779318 4705 False 3259.00 5055 90.1475 55 4813 2 chr2A.!!$F1 4758

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
921 941 0.163788 CGAAGCTGCGTCGTCAAATT 59.836 50.000 25.88 0.00 33.80 1.82 F
1471 1502 0.039074 CCGTGTCTCACACTCTCACC 60.039 60.000 5.31 0.00 46.46 4.02 F
1512 1543 0.108396 TATGCATCCGGACCATGGTG 59.892 55.000 25.52 8.92 0.00 4.17 F
1519 1550 1.024579 CCGGACCATGGTGCTTACAC 61.025 60.000 30.70 11.52 46.66 2.90 F
2167 2203 3.105203 CCACTACCAAAAATTATGCGCG 58.895 45.455 0.00 0.00 0.00 6.86 F
3926 4249 2.301870 TGTCCGGAAGATGGTATATGGC 59.698 50.000 5.23 0.00 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2164 2200 1.063469 CCCCTGCAAATAAGTAACGCG 59.937 52.381 3.53 3.53 0.00 6.01 R
2520 2602 3.678289 TGCAAGATGCTTGTACAGACAT 58.322 40.909 11.30 11.30 45.31 3.06 R
2780 3091 4.964262 AGAGCTGAAATCAGAGAGAGGAAT 59.036 41.667 14.43 0.00 46.59 3.01 R
3573 3894 5.208121 TCAATCTGTTGAAAAGGAAAGGGT 58.792 37.500 0.00 0.00 41.22 4.34 R
4135 4458 2.093711 CACCGACCACCTCATACAATCA 60.094 50.000 0.00 0.00 0.00 2.57 R
5001 5380 0.034863 TCCATTTCCCCGTTGTAGCC 60.035 55.000 0.00 0.00 0.00 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.668510 TCAGAATCACCTAAAATCATCTAAGC 57.331 34.615 0.00 0.00 0.00 3.09
27 28 7.439356 TCAGAATCACCTAAAATCATCTAAGCG 59.561 37.037 0.00 0.00 0.00 4.68
28 29 6.708054 AGAATCACCTAAAATCATCTAAGCGG 59.292 38.462 0.00 0.00 0.00 5.52
29 30 4.703897 TCACCTAAAATCATCTAAGCGGG 58.296 43.478 0.00 0.00 0.00 6.13
30 31 4.407621 TCACCTAAAATCATCTAAGCGGGA 59.592 41.667 0.00 0.00 0.00 5.14
31 32 4.511826 CACCTAAAATCATCTAAGCGGGAC 59.488 45.833 0.00 0.00 0.00 4.46
48 49 4.877323 GGGACGAAACCAAGAATATCAC 57.123 45.455 0.00 0.00 0.00 3.06
49 50 3.626217 GGGACGAAACCAAGAATATCACC 59.374 47.826 0.00 0.00 0.00 4.02
50 51 4.514401 GGACGAAACCAAGAATATCACCT 58.486 43.478 0.00 0.00 0.00 4.00
51 52 4.571176 GGACGAAACCAAGAATATCACCTC 59.429 45.833 0.00 0.00 0.00 3.85
52 53 4.514401 ACGAAACCAAGAATATCACCTCC 58.486 43.478 0.00 0.00 0.00 4.30
53 54 3.877508 CGAAACCAAGAATATCACCTCCC 59.122 47.826 0.00 0.00 0.00 4.30
54 55 4.384208 CGAAACCAAGAATATCACCTCCCT 60.384 45.833 0.00 0.00 0.00 4.20
55 56 5.510430 GAAACCAAGAATATCACCTCCCTT 58.490 41.667 0.00 0.00 0.00 3.95
56 57 5.536497 AACCAAGAATATCACCTCCCTTT 57.464 39.130 0.00 0.00 0.00 3.11
57 58 6.652205 AACCAAGAATATCACCTCCCTTTA 57.348 37.500 0.00 0.00 0.00 1.85
58 59 6.652205 ACCAAGAATATCACCTCCCTTTAA 57.348 37.500 0.00 0.00 0.00 1.52
59 60 7.226059 ACCAAGAATATCACCTCCCTTTAAT 57.774 36.000 0.00 0.00 0.00 1.40
60 61 8.344939 ACCAAGAATATCACCTCCCTTTAATA 57.655 34.615 0.00 0.00 0.00 0.98
61 62 8.440771 ACCAAGAATATCACCTCCCTTTAATAG 58.559 37.037 0.00 0.00 0.00 1.73
62 63 8.440771 CCAAGAATATCACCTCCCTTTAATAGT 58.559 37.037 0.00 0.00 0.00 2.12
563 580 9.964354 TGAAATTTCTTGGAGATATCTTCTTCA 57.036 29.630 18.64 8.64 38.26 3.02
581 598 9.241919 TCTTCTTCATGGTATTAATCTTTGCAA 57.758 29.630 0.00 0.00 0.00 4.08
651 668 2.974148 CGCCACTGCTGCTCAACA 60.974 61.111 0.00 0.00 34.43 3.33
665 682 4.123506 TGCTCAACAACATGAACGAACTA 58.876 39.130 0.00 0.00 0.00 2.24
802 821 3.541713 GAGCCGGCCCAGTAGGAG 61.542 72.222 26.15 0.00 38.24 3.69
837 857 4.516698 GGCGTGTACCAGTAAGCTAGTATA 59.483 45.833 0.00 0.00 0.00 1.47
839 859 6.294397 GGCGTGTACCAGTAAGCTAGTATATT 60.294 42.308 0.00 0.00 0.00 1.28
844 864 3.927142 CCAGTAAGCTAGTATATTGCGCC 59.073 47.826 4.18 0.00 34.56 6.53
850 870 4.246458 AGCTAGTATATTGCGCCTTAAGC 58.754 43.478 4.18 3.22 34.56 3.09
919 939 3.230540 CGAAGCTGCGTCGTCAAA 58.769 55.556 25.88 0.00 33.80 2.69
920 940 1.781555 CGAAGCTGCGTCGTCAAAT 59.218 52.632 25.88 0.00 33.80 2.32
921 941 0.163788 CGAAGCTGCGTCGTCAAATT 59.836 50.000 25.88 0.00 33.80 1.82
922 942 1.388768 CGAAGCTGCGTCGTCAAATTA 59.611 47.619 25.88 0.00 33.80 1.40
923 943 2.759038 GAAGCTGCGTCGTCAAATTAC 58.241 47.619 0.00 0.00 0.00 1.89
929 949 0.725117 CGTCGTCAAATTACTGGGCC 59.275 55.000 0.00 0.00 0.00 5.80
1116 1147 0.178973 AACAACCCTTTCCCCTTCCG 60.179 55.000 0.00 0.00 0.00 4.30
1123 1154 2.426305 CTTTCCCCTTCCGTTGCCCT 62.426 60.000 0.00 0.00 0.00 5.19
1177 1208 2.412089 CGCCGAGAAAGAGGTAAACAAG 59.588 50.000 0.00 0.00 0.00 3.16
1180 1211 3.813166 CCGAGAAAGAGGTAAACAAGCAA 59.187 43.478 0.00 0.00 0.00 3.91
1181 1212 4.083802 CCGAGAAAGAGGTAAACAAGCAAG 60.084 45.833 0.00 0.00 0.00 4.01
1188 1219 4.345257 AGAGGTAAACAAGCAAGAGAGTCA 59.655 41.667 0.00 0.00 0.00 3.41
1202 1233 2.507324 GTCAGCGAGCGAGAACCC 60.507 66.667 0.00 0.00 0.00 4.11
1236 1267 1.588861 GTCTCTTATTCCGCGTGCTTC 59.411 52.381 4.92 0.00 0.00 3.86
1287 1318 1.566018 GGTTCACGCAGAAGAACGGG 61.566 60.000 0.00 0.00 43.06 5.28
1296 1327 2.034221 AAGAACGGGCTGAAGGGC 59.966 61.111 0.00 0.00 40.05 5.19
1471 1502 0.039074 CCGTGTCTCACACTCTCACC 60.039 60.000 5.31 0.00 46.46 4.02
1478 1509 0.170339 TCACACTCTCACCGCATACG 59.830 55.000 0.00 0.00 39.67 3.06
1479 1510 1.153823 ACACTCTCACCGCATACGC 60.154 57.895 0.00 0.00 38.22 4.42
1480 1511 1.153842 CACTCTCACCGCATACGCA 60.154 57.895 0.00 0.00 38.40 5.24
1511 1542 0.843309 TTATGCATCCGGACCATGGT 59.157 50.000 19.89 19.89 0.00 3.55
1512 1543 0.108396 TATGCATCCGGACCATGGTG 59.892 55.000 25.52 8.92 0.00 4.17
1519 1550 1.024579 CCGGACCATGGTGCTTACAC 61.025 60.000 30.70 11.52 46.66 2.90
1620 1651 5.760253 AGTATATGAATGAGTTTTCCGGCAG 59.240 40.000 0.00 0.00 0.00 4.85
1630 1661 4.145436 TCCGGCAGGATTTCTCCA 57.855 55.556 0.00 0.00 44.79 3.86
1642 1673 4.476479 AGGATTTCTCCAGAGCAGGTAATT 59.524 41.667 0.00 0.00 44.79 1.40
1694 1725 6.267817 CAATTGGGTTGCTGTATTCATGTAG 58.732 40.000 0.00 0.00 0.00 2.74
1695 1726 3.884895 TGGGTTGCTGTATTCATGTAGG 58.115 45.455 0.00 0.00 0.00 3.18
1696 1727 3.521531 TGGGTTGCTGTATTCATGTAGGA 59.478 43.478 0.00 0.00 0.00 2.94
1697 1728 4.130118 GGGTTGCTGTATTCATGTAGGAG 58.870 47.826 0.00 0.00 0.00 3.69
1838 1869 7.844779 ACTACTTCCCATCTTATCAAGAGGTAA 59.155 37.037 0.57 0.00 41.61 2.85
1935 1967 7.276438 GGCCAGAATAACTTTCATGATTGTTTC 59.724 37.037 15.75 10.27 0.00 2.78
1961 1993 5.804944 TGGATCACATTTTCACATTGGTT 57.195 34.783 0.00 0.00 0.00 3.67
2074 2109 8.958506 TCTCATCTCCTTCTGTACTTTAGTAAC 58.041 37.037 0.00 0.00 31.52 2.50
2163 2199 7.121168 TCAGCTTCTCCACTACCAAAAATTATG 59.879 37.037 0.00 0.00 0.00 1.90
2164 2200 6.036470 GCTTCTCCACTACCAAAAATTATGC 58.964 40.000 0.00 0.00 0.00 3.14
2167 2203 3.105203 CCACTACCAAAAATTATGCGCG 58.895 45.455 0.00 0.00 0.00 6.86
2520 2602 8.650490 TGCTCATTAGTTGATATTCAGGTATGA 58.350 33.333 0.00 0.00 32.72 2.15
2979 3290 7.355017 ACATTTTGCACGCAATACAGATATAG 58.645 34.615 5.11 0.00 35.70 1.31
3926 4249 2.301870 TGTCCGGAAGATGGTATATGGC 59.698 50.000 5.23 0.00 0.00 4.40
4016 4339 3.837355 AGAAGATGCCAATGGGGATAAC 58.163 45.455 0.00 0.00 46.50 1.89
4135 4458 6.357579 TCTTGTTACAAATGGATGCCAATT 57.642 33.333 0.00 0.00 36.95 2.32
4208 4533 0.532573 TGGATGTCGAGAGGAACAGC 59.467 55.000 0.00 0.00 0.00 4.40
4231 4556 5.620654 GCTTTTTCATGACTCAGCAAGCATA 60.621 40.000 12.34 0.00 36.29 3.14
4314 4639 4.922692 TCATGAAATTTTGTTCGCATGGAC 59.077 37.500 12.67 0.00 35.19 4.02
4319 4644 1.511318 TTTGTTCGCATGGACGGGTG 61.511 55.000 0.00 0.00 0.00 4.61
4320 4645 3.124921 GTTCGCATGGACGGGTGG 61.125 66.667 0.00 0.00 0.00 4.61
4359 4726 5.311265 TCTGCATGATCAGACTTTTCTTGT 58.689 37.500 0.09 0.00 38.11 3.16
4366 4733 2.886523 TCAGACTTTTCTTGTGCCATGG 59.113 45.455 7.63 7.63 0.00 3.66
4471 4840 5.945784 TCAGAATTTGGAGTTGGTGGATTAG 59.054 40.000 0.00 0.00 0.00 1.73
4481 4850 6.240549 AGTTGGTGGATTAGTTCCTAGATG 57.759 41.667 0.00 0.00 45.68 2.90
4498 4867 6.016360 TCCTAGATGAAATTGTGGTTGTGTTG 60.016 38.462 0.00 0.00 0.00 3.33
4515 4884 5.316167 TGTGTTGAAGGTTCATTAGCAGAT 58.684 37.500 0.00 0.00 37.00 2.90
4524 4893 6.704310 AGGTTCATTAGCAGATTTTTGCATT 58.296 32.000 0.52 0.00 46.47 3.56
4557 4929 5.681337 TCATTACATCGCAAGTGTTCAAA 57.319 34.783 0.00 0.00 39.48 2.69
4567 4939 6.198687 TCGCAAGTGTTCAAAGTTTAGAATG 58.801 36.000 0.00 0.00 39.48 2.67
4572 4945 9.869844 CAAGTGTTCAAAGTTTAGAATGTCTAG 57.130 33.333 0.00 0.00 29.56 2.43
4627 5000 4.584327 AATGTGGTAAGCAACAACCTTC 57.416 40.909 0.00 0.00 36.67 3.46
4630 5003 3.630312 TGTGGTAAGCAACAACCTTCTTC 59.370 43.478 0.00 0.00 36.67 2.87
4636 5009 7.286775 TGGTAAGCAACAACCTTCTTCTTTTAT 59.713 33.333 0.00 0.00 36.67 1.40
4702 5075 5.528690 TGTTGGTGCATTGCTATAGAAGATC 59.471 40.000 10.49 0.00 0.00 2.75
4783 5157 8.095792 TGGCATCACACAAAAATATCTCAAAAT 58.904 29.630 0.00 0.00 0.00 1.82
4820 5195 4.832248 TGCCAACTCAGACCTAATAACAG 58.168 43.478 0.00 0.00 0.00 3.16
4837 5212 4.713792 AACAGAATGAGTCAGGGTCTTT 57.286 40.909 0.00 0.00 39.69 2.52
4840 5215 5.087323 ACAGAATGAGTCAGGGTCTTTCTA 58.913 41.667 0.00 0.00 39.69 2.10
4911 5290 6.624423 GCACATTTACATTGCTCAGATGAACT 60.624 38.462 0.00 0.00 33.26 3.01
4912 5291 7.414429 GCACATTTACATTGCTCAGATGAACTA 60.414 37.037 0.00 0.00 33.26 2.24
4913 5292 8.453320 CACATTTACATTGCTCAGATGAACTAA 58.547 33.333 0.00 0.00 0.00 2.24
4970 5349 6.054941 TCTGTTAGCTTGAAAACACATCTCA 58.945 36.000 0.00 0.00 32.43 3.27
4972 5351 5.008613 TGTTAGCTTGAAAACACATCTCACC 59.991 40.000 0.00 0.00 30.88 4.02
4973 5352 3.825328 AGCTTGAAAACACATCTCACCT 58.175 40.909 0.00 0.00 0.00 4.00
4974 5353 3.817647 AGCTTGAAAACACATCTCACCTC 59.182 43.478 0.00 0.00 0.00 3.85
4975 5354 3.057946 GCTTGAAAACACATCTCACCTCC 60.058 47.826 0.00 0.00 0.00 4.30
4976 5355 3.855255 TGAAAACACATCTCACCTCCA 57.145 42.857 0.00 0.00 0.00 3.86
4977 5356 3.476552 TGAAAACACATCTCACCTCCAC 58.523 45.455 0.00 0.00 0.00 4.02
4978 5357 2.568623 AAACACATCTCACCTCCACC 57.431 50.000 0.00 0.00 0.00 4.61
4979 5358 1.434188 AACACATCTCACCTCCACCA 58.566 50.000 0.00 0.00 0.00 4.17
4980 5359 0.687354 ACACATCTCACCTCCACCAC 59.313 55.000 0.00 0.00 0.00 4.16
4981 5360 0.686789 CACATCTCACCTCCACCACA 59.313 55.000 0.00 0.00 0.00 4.17
4982 5361 1.280133 CACATCTCACCTCCACCACAT 59.720 52.381 0.00 0.00 0.00 3.21
4983 5362 1.988107 ACATCTCACCTCCACCACATT 59.012 47.619 0.00 0.00 0.00 2.71
4984 5363 2.376518 ACATCTCACCTCCACCACATTT 59.623 45.455 0.00 0.00 0.00 2.32
4985 5364 3.181429 ACATCTCACCTCCACCACATTTT 60.181 43.478 0.00 0.00 0.00 1.82
4986 5365 3.140325 TCTCACCTCCACCACATTTTC 57.860 47.619 0.00 0.00 0.00 2.29
4987 5366 2.441375 TCTCACCTCCACCACATTTTCA 59.559 45.455 0.00 0.00 0.00 2.69
4988 5367 3.074390 TCTCACCTCCACCACATTTTCAT 59.926 43.478 0.00 0.00 0.00 2.57
4989 5368 4.288366 TCTCACCTCCACCACATTTTCATA 59.712 41.667 0.00 0.00 0.00 2.15
4990 5369 4.991776 TCACCTCCACCACATTTTCATAA 58.008 39.130 0.00 0.00 0.00 1.90
4991 5370 4.764823 TCACCTCCACCACATTTTCATAAC 59.235 41.667 0.00 0.00 0.00 1.89
4992 5371 4.522405 CACCTCCACCACATTTTCATAACA 59.478 41.667 0.00 0.00 0.00 2.41
4993 5372 4.766891 ACCTCCACCACATTTTCATAACAG 59.233 41.667 0.00 0.00 0.00 3.16
4994 5373 4.380867 CCTCCACCACATTTTCATAACAGC 60.381 45.833 0.00 0.00 0.00 4.40
4995 5374 3.190327 TCCACCACATTTTCATAACAGCG 59.810 43.478 0.00 0.00 0.00 5.18
4996 5375 3.057596 CCACCACATTTTCATAACAGCGT 60.058 43.478 0.00 0.00 0.00 5.07
4997 5376 3.913763 CACCACATTTTCATAACAGCGTG 59.086 43.478 0.00 0.00 0.00 5.34
4998 5377 3.568007 ACCACATTTTCATAACAGCGTGT 59.432 39.130 0.00 0.00 0.00 4.49
4999 5378 4.037446 ACCACATTTTCATAACAGCGTGTT 59.963 37.500 8.15 8.15 43.88 3.32
5000 5379 4.981674 CCACATTTTCATAACAGCGTGTTT 59.018 37.500 8.33 0.00 41.45 2.83
5001 5380 5.107913 CCACATTTTCATAACAGCGTGTTTG 60.108 40.000 8.33 7.34 41.45 2.93
5002 5381 4.981674 ACATTTTCATAACAGCGTGTTTGG 59.018 37.500 8.33 3.19 41.45 3.28
5003 5382 2.697431 TTCATAACAGCGTGTTTGGC 57.303 45.000 8.33 0.00 41.45 4.52
5004 5383 1.890876 TCATAACAGCGTGTTTGGCT 58.109 45.000 8.33 0.00 41.45 4.75
5005 5384 3.046968 TCATAACAGCGTGTTTGGCTA 57.953 42.857 8.33 0.00 41.45 3.93
5006 5385 2.739913 TCATAACAGCGTGTTTGGCTAC 59.260 45.455 8.33 0.00 41.45 3.58
5007 5386 2.242047 TAACAGCGTGTTTGGCTACA 57.758 45.000 8.33 0.00 41.45 2.74
5008 5387 1.384525 AACAGCGTGTTTGGCTACAA 58.615 45.000 0.00 0.00 37.26 2.41
5009 5388 0.661020 ACAGCGTGTTTGGCTACAAC 59.339 50.000 0.00 0.00 39.08 3.32
5010 5389 0.384230 CAGCGTGTTTGGCTACAACG 60.384 55.000 0.00 0.00 39.08 4.10
5011 5390 1.082366 GCGTGTTTGGCTACAACGG 60.082 57.895 5.13 0.00 36.06 4.44
5012 5391 1.572447 CGTGTTTGGCTACAACGGG 59.428 57.895 0.00 0.00 36.06 5.28
5013 5392 1.847890 CGTGTTTGGCTACAACGGGG 61.848 60.000 0.00 0.00 36.06 5.73
5072 5462 5.699097 TGGGAAGTTGAATTTTTAGTCCG 57.301 39.130 0.00 0.00 0.00 4.79
5078 5468 8.079809 GGAAGTTGAATTTTTAGTCCGAATTCA 58.920 33.333 6.22 6.63 43.90 2.57
5110 5500 5.122396 GTGTGTGCTGGGAATTAGTAAAGAG 59.878 44.000 0.00 0.00 0.00 2.85
5125 5515 8.779354 TTAGTAAAGAGAATTTGAGAGGAAGC 57.221 34.615 0.00 0.00 0.00 3.86
5130 5520 4.759183 AGAGAATTTGAGAGGAAGCAACAC 59.241 41.667 0.00 0.00 0.00 3.32
5131 5521 4.723309 AGAATTTGAGAGGAAGCAACACT 58.277 39.130 0.00 0.00 0.00 3.55
5135 5525 1.980765 TGAGAGGAAGCAACACTCCAT 59.019 47.619 0.00 0.00 31.70 3.41
5140 5530 0.166814 GAAGCAACACTCCATGCGAC 59.833 55.000 0.00 0.00 46.98 5.19
5151 5541 0.451783 CCATGCGACTTAACAAGGGC 59.548 55.000 0.00 0.00 34.09 5.19
5184 5574 2.103263 AGATACGTGAGAATTGGCCTCC 59.897 50.000 3.32 0.00 0.00 4.30
5194 5584 1.225373 ATTGGCCTCCCTAGCAATGA 58.775 50.000 3.32 0.00 0.00 2.57
5207 5597 9.171877 CTCCCTAGCAATGAATTATATTTCCTC 57.828 37.037 5.20 0.00 0.00 3.71
5208 5598 8.668653 TCCCTAGCAATGAATTATATTTCCTCA 58.331 33.333 5.20 0.00 0.00 3.86
5233 5623 1.281867 CCTTGAGTTCCCATGCCACTA 59.718 52.381 0.00 0.00 0.00 2.74
5244 5634 3.364549 CCATGCCACTAATTTCTCCCAA 58.635 45.455 0.00 0.00 0.00 4.12
5250 5640 4.560716 GCCACTAATTTCTCCCAACCAAAC 60.561 45.833 0.00 0.00 0.00 2.93
5253 5643 6.158598 CACTAATTTCTCCCAACCAAACATG 58.841 40.000 0.00 0.00 0.00 3.21
5264 5654 2.945278 ACCAAACATGCTGTAAATGCG 58.055 42.857 0.00 0.00 0.00 4.73
5273 5663 2.621055 TGCTGTAAATGCGACCAAAGTT 59.379 40.909 0.00 0.00 0.00 2.66
5296 5686 9.097257 AGTTTGGACATCTTTGTTTGTATTTTG 57.903 29.630 0.00 0.00 35.79 2.44
5345 5735 9.893305 AAAGTAATTAAACCGAATTCTCAGTTG 57.107 29.630 3.52 0.00 31.51 3.16
5346 5736 8.040716 AGTAATTAAACCGAATTCTCAGTTGG 57.959 34.615 3.52 0.00 31.51 3.77
5347 5737 5.897377 ATTAAACCGAATTCTCAGTTGGG 57.103 39.130 3.52 0.00 0.00 4.12
5348 5738 2.200373 AACCGAATTCTCAGTTGGGG 57.800 50.000 3.52 0.00 0.00 4.96
5349 5739 0.328258 ACCGAATTCTCAGTTGGGGG 59.672 55.000 3.52 0.00 0.00 5.40
5364 5754 3.656457 GGGGGCGTAAGGAGAAAAA 57.344 52.632 0.00 0.00 38.28 1.94
5382 5772 1.851658 AAAAATGTGGCGAGCACAAC 58.148 45.000 0.00 0.00 36.06 3.32
5383 5773 0.031994 AAAATGTGGCGAGCACAACC 59.968 50.000 0.00 0.00 36.06 3.77
5384 5774 0.823356 AAATGTGGCGAGCACAACCT 60.823 50.000 0.00 0.00 36.06 3.50
5385 5775 1.237285 AATGTGGCGAGCACAACCTC 61.237 55.000 0.00 0.00 36.06 3.85
5386 5776 2.280797 GTGGCGAGCACAACCTCA 60.281 61.111 0.00 0.00 0.00 3.86
5387 5777 2.031012 TGGCGAGCACAACCTCAG 59.969 61.111 0.00 0.00 0.00 3.35
5388 5778 2.343758 GGCGAGCACAACCTCAGA 59.656 61.111 0.00 0.00 0.00 3.27
5389 5779 1.078848 GGCGAGCACAACCTCAGAT 60.079 57.895 0.00 0.00 0.00 2.90
5390 5780 1.086634 GGCGAGCACAACCTCAGATC 61.087 60.000 0.00 0.00 0.00 2.75
5391 5781 0.390340 GCGAGCACAACCTCAGATCA 60.390 55.000 0.00 0.00 0.00 2.92
5392 5782 1.941209 GCGAGCACAACCTCAGATCAA 60.941 52.381 0.00 0.00 0.00 2.57
5393 5783 2.416747 CGAGCACAACCTCAGATCAAA 58.583 47.619 0.00 0.00 0.00 2.69
5394 5784 2.807967 CGAGCACAACCTCAGATCAAAA 59.192 45.455 0.00 0.00 0.00 2.44
5395 5785 3.438087 CGAGCACAACCTCAGATCAAAAT 59.562 43.478 0.00 0.00 0.00 1.82
5396 5786 4.083110 CGAGCACAACCTCAGATCAAAATT 60.083 41.667 0.00 0.00 0.00 1.82
5397 5787 5.122239 CGAGCACAACCTCAGATCAAAATTA 59.878 40.000 0.00 0.00 0.00 1.40
5398 5788 6.348458 CGAGCACAACCTCAGATCAAAATTAA 60.348 38.462 0.00 0.00 0.00 1.40
5399 5789 7.288810 AGCACAACCTCAGATCAAAATTAAA 57.711 32.000 0.00 0.00 0.00 1.52
5400 5790 7.899973 AGCACAACCTCAGATCAAAATTAAAT 58.100 30.769 0.00 0.00 0.00 1.40
5401 5791 7.816031 AGCACAACCTCAGATCAAAATTAAATG 59.184 33.333 0.00 0.00 0.00 2.32
5402 5792 7.814107 GCACAACCTCAGATCAAAATTAAATGA 59.186 33.333 0.00 0.00 0.00 2.57
5403 5793 9.132521 CACAACCTCAGATCAAAATTAAATGAC 57.867 33.333 0.00 0.00 0.00 3.06
5404 5794 8.023128 ACAACCTCAGATCAAAATTAAATGACG 58.977 33.333 0.00 0.00 0.00 4.35
5405 5795 7.921786 ACCTCAGATCAAAATTAAATGACGA 57.078 32.000 0.00 0.00 0.00 4.20
5406 5796 8.335532 ACCTCAGATCAAAATTAAATGACGAA 57.664 30.769 0.00 0.00 0.00 3.85
5407 5797 8.960591 ACCTCAGATCAAAATTAAATGACGAAT 58.039 29.630 0.00 0.00 0.00 3.34
5408 5798 9.443283 CCTCAGATCAAAATTAAATGACGAATC 57.557 33.333 0.00 0.00 0.00 2.52
5414 5804 9.927668 ATCAAAATTAAATGACGAATCTTTGGT 57.072 25.926 0.00 0.00 0.00 3.67
5425 5815 8.712285 TGACGAATCTTTGGTAACTTAATAGG 57.288 34.615 0.00 0.00 37.61 2.57
5426 5816 7.767198 TGACGAATCTTTGGTAACTTAATAGGG 59.233 37.037 0.00 0.00 37.61 3.53
5427 5817 7.854337 ACGAATCTTTGGTAACTTAATAGGGA 58.146 34.615 0.00 0.00 37.61 4.20
5428 5818 7.985752 ACGAATCTTTGGTAACTTAATAGGGAG 59.014 37.037 0.00 0.00 37.61 4.30
5429 5819 7.041984 CGAATCTTTGGTAACTTAATAGGGAGC 60.042 40.741 0.00 0.00 37.61 4.70
5430 5820 6.630203 TCTTTGGTAACTTAATAGGGAGCA 57.370 37.500 0.00 0.00 37.61 4.26
5431 5821 6.412214 TCTTTGGTAACTTAATAGGGAGCAC 58.588 40.000 0.00 0.00 37.61 4.40
5432 5822 5.765576 TTGGTAACTTAATAGGGAGCACA 57.234 39.130 0.00 0.00 37.61 4.57
5433 5823 5.765576 TGGTAACTTAATAGGGAGCACAA 57.234 39.130 0.00 0.00 37.61 3.33
5434 5824 6.321821 TGGTAACTTAATAGGGAGCACAAT 57.678 37.500 0.00 0.00 37.61 2.71
5435 5825 6.354130 TGGTAACTTAATAGGGAGCACAATC 58.646 40.000 0.00 0.00 37.61 2.67
5436 5826 6.157994 TGGTAACTTAATAGGGAGCACAATCT 59.842 38.462 0.00 0.00 37.61 2.40
5437 5827 7.054751 GGTAACTTAATAGGGAGCACAATCTT 58.945 38.462 0.00 0.00 0.00 2.40
5438 5828 7.226918 GGTAACTTAATAGGGAGCACAATCTTC 59.773 40.741 0.00 0.00 0.00 2.87
5439 5829 5.360591 ACTTAATAGGGAGCACAATCTTCG 58.639 41.667 0.00 0.00 0.00 3.79
5440 5830 2.246719 ATAGGGAGCACAATCTTCGC 57.753 50.000 0.00 0.00 0.00 4.70
5441 5831 1.195115 TAGGGAGCACAATCTTCGCT 58.805 50.000 0.00 0.00 39.12 4.93
5442 5832 0.326264 AGGGAGCACAATCTTCGCTT 59.674 50.000 0.00 0.00 35.75 4.68
5443 5833 1.555075 AGGGAGCACAATCTTCGCTTA 59.445 47.619 0.00 0.00 35.75 3.09
5444 5834 2.027192 AGGGAGCACAATCTTCGCTTAA 60.027 45.455 0.00 0.00 35.75 1.85
5445 5835 2.352960 GGGAGCACAATCTTCGCTTAAG 59.647 50.000 0.00 0.00 35.75 1.85
5447 5837 3.062774 GGAGCACAATCTTCGCTTAAGAC 59.937 47.826 6.67 0.00 46.90 3.01
5448 5838 3.003480 AGCACAATCTTCGCTTAAGACC 58.997 45.455 6.67 0.00 46.90 3.85
5449 5839 2.742053 GCACAATCTTCGCTTAAGACCA 59.258 45.455 6.67 0.00 46.90 4.02
5450 5840 3.188460 GCACAATCTTCGCTTAAGACCAA 59.812 43.478 6.67 0.00 46.90 3.67
5451 5841 4.670221 GCACAATCTTCGCTTAAGACCAAG 60.670 45.833 6.67 4.56 46.90 3.61
5452 5842 4.452455 CACAATCTTCGCTTAAGACCAAGT 59.548 41.667 6.67 0.00 46.90 3.16
5453 5843 5.637810 CACAATCTTCGCTTAAGACCAAGTA 59.362 40.000 6.67 0.00 46.90 2.24
5454 5844 6.147164 CACAATCTTCGCTTAAGACCAAGTAA 59.853 38.462 6.67 0.00 46.90 2.24
5455 5845 6.708949 ACAATCTTCGCTTAAGACCAAGTAAA 59.291 34.615 6.67 0.00 46.90 2.01
5456 5846 7.390718 ACAATCTTCGCTTAAGACCAAGTAAAT 59.609 33.333 6.67 0.00 46.90 1.40
5457 5847 8.879759 CAATCTTCGCTTAAGACCAAGTAAATA 58.120 33.333 6.67 0.00 46.90 1.40
5458 5848 9.444600 AATCTTCGCTTAAGACCAAGTAAATAA 57.555 29.630 6.67 0.00 46.90 1.40
5459 5849 8.475331 TCTTCGCTTAAGACCAAGTAAATAAG 57.525 34.615 6.67 0.00 39.36 1.73
5460 5850 8.092687 TCTTCGCTTAAGACCAAGTAAATAAGT 58.907 33.333 6.67 0.00 39.36 2.24
5461 5851 8.611654 TTCGCTTAAGACCAAGTAAATAAGTT 57.388 30.769 6.67 0.00 0.00 2.66
5462 5852 8.611654 TCGCTTAAGACCAAGTAAATAAGTTT 57.388 30.769 6.67 0.00 0.00 2.66
5463 5853 9.709495 TCGCTTAAGACCAAGTAAATAAGTTTA 57.291 29.630 6.67 0.00 0.00 2.01
5474 5864 9.503427 CAAGTAAATAAGTTTATGTAAGCAGGC 57.497 33.333 0.00 0.00 32.76 4.85
5475 5865 9.462606 AAGTAAATAAGTTTATGTAAGCAGGCT 57.537 29.630 0.00 0.00 32.76 4.58
5482 5872 8.894768 AAGTTTATGTAAGCAGGCTATAAGAG 57.105 34.615 0.00 0.00 0.00 2.85
5483 5873 8.024145 AGTTTATGTAAGCAGGCTATAAGAGT 57.976 34.615 0.00 0.00 0.00 3.24
5484 5874 8.487028 AGTTTATGTAAGCAGGCTATAAGAGTT 58.513 33.333 0.00 0.00 0.00 3.01
5485 5875 9.760077 GTTTATGTAAGCAGGCTATAAGAGTTA 57.240 33.333 0.00 0.00 0.00 2.24
5489 5879 9.853177 ATGTAAGCAGGCTATAAGAGTTAAAAT 57.147 29.630 0.00 0.00 0.00 1.82
5490 5880 9.109393 TGTAAGCAGGCTATAAGAGTTAAAATG 57.891 33.333 0.00 0.00 0.00 2.32
5491 5881 9.110502 GTAAGCAGGCTATAAGAGTTAAAATGT 57.889 33.333 0.00 0.00 0.00 2.71
5492 5882 8.581253 AAGCAGGCTATAAGAGTTAAAATGTT 57.419 30.769 0.00 0.00 0.00 2.71
5493 5883 9.681062 AAGCAGGCTATAAGAGTTAAAATGTTA 57.319 29.630 0.00 0.00 0.00 2.41
5494 5884 9.853177 AGCAGGCTATAAGAGTTAAAATGTTAT 57.147 29.630 0.00 0.00 0.00 1.89
5505 5895 9.391006 AGAGTTAAAATGTTATATTTCGGCTGA 57.609 29.630 0.00 0.00 0.00 4.26
5506 5896 9.434559 GAGTTAAAATGTTATATTTCGGCTGAC 57.565 33.333 0.00 0.00 0.00 3.51
5507 5897 8.952278 AGTTAAAATGTTATATTTCGGCTGACA 58.048 29.630 0.00 0.00 0.00 3.58
5508 5898 9.730420 GTTAAAATGTTATATTTCGGCTGACAT 57.270 29.630 0.00 0.00 0.00 3.06
5509 5899 9.729023 TTAAAATGTTATATTTCGGCTGACATG 57.271 29.630 4.37 0.00 0.00 3.21
5510 5900 5.947228 ATGTTATATTTCGGCTGACATGG 57.053 39.130 4.37 0.00 0.00 3.66
5511 5901 5.029807 TGTTATATTTCGGCTGACATGGA 57.970 39.130 4.37 0.00 0.00 3.41
5512 5902 5.056480 TGTTATATTTCGGCTGACATGGAG 58.944 41.667 4.37 0.00 0.00 3.86
5513 5903 2.620251 TATTTCGGCTGACATGGAGG 57.380 50.000 4.37 0.00 0.00 4.30
5514 5904 0.107017 ATTTCGGCTGACATGGAGGG 60.107 55.000 0.00 0.00 0.00 4.30
5515 5905 2.196997 TTTCGGCTGACATGGAGGGG 62.197 60.000 0.00 0.00 0.00 4.79
5516 5906 3.083349 CGGCTGACATGGAGGGGA 61.083 66.667 0.00 0.00 0.00 4.81
5517 5907 2.914289 GGCTGACATGGAGGGGAG 59.086 66.667 0.00 0.00 0.00 4.30
5518 5908 2.750657 GGCTGACATGGAGGGGAGG 61.751 68.421 0.00 0.00 0.00 4.30
5519 5909 2.750657 GCTGACATGGAGGGGAGGG 61.751 68.421 0.00 0.00 0.00 4.30
5520 5910 1.003442 CTGACATGGAGGGGAGGGA 59.997 63.158 0.00 0.00 0.00 4.20
5521 5911 0.621571 CTGACATGGAGGGGAGGGAA 60.622 60.000 0.00 0.00 0.00 3.97
5522 5912 0.621571 TGACATGGAGGGGAGGGAAG 60.622 60.000 0.00 0.00 0.00 3.46
5523 5913 0.326618 GACATGGAGGGGAGGGAAGA 60.327 60.000 0.00 0.00 0.00 2.87
5524 5914 0.327000 ACATGGAGGGGAGGGAAGAG 60.327 60.000 0.00 0.00 0.00 2.85
5525 5915 1.059006 CATGGAGGGGAGGGAAGAGG 61.059 65.000 0.00 0.00 0.00 3.69
5526 5916 1.238896 ATGGAGGGGAGGGAAGAGGA 61.239 60.000 0.00 0.00 0.00 3.71
5527 5917 1.074850 GGAGGGGAGGGAAGAGGAG 60.075 68.421 0.00 0.00 0.00 3.69
5528 5918 1.595058 GGAGGGGAGGGAAGAGGAGA 61.595 65.000 0.00 0.00 0.00 3.71
5529 5919 0.397957 GAGGGGAGGGAAGAGGAGAC 60.398 65.000 0.00 0.00 0.00 3.36
5530 5920 1.156322 AGGGGAGGGAAGAGGAGACA 61.156 60.000 0.00 0.00 0.00 3.41
5531 5921 0.689412 GGGGAGGGAAGAGGAGACAG 60.689 65.000 0.00 0.00 0.00 3.51
5532 5922 0.336737 GGGAGGGAAGAGGAGACAGA 59.663 60.000 0.00 0.00 0.00 3.41
5533 5923 1.273324 GGGAGGGAAGAGGAGACAGAA 60.273 57.143 0.00 0.00 0.00 3.02
5534 5924 2.628290 GGGAGGGAAGAGGAGACAGAAT 60.628 54.545 0.00 0.00 0.00 2.40
5535 5925 3.374318 GGGAGGGAAGAGGAGACAGAATA 60.374 52.174 0.00 0.00 0.00 1.75
5536 5926 3.895041 GGAGGGAAGAGGAGACAGAATAG 59.105 52.174 0.00 0.00 0.00 1.73
5537 5927 3.895041 GAGGGAAGAGGAGACAGAATAGG 59.105 52.174 0.00 0.00 0.00 2.57
5538 5928 3.533907 AGGGAAGAGGAGACAGAATAGGA 59.466 47.826 0.00 0.00 0.00 2.94
5539 5929 3.895041 GGGAAGAGGAGACAGAATAGGAG 59.105 52.174 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.282569 GCTTAGATGATTTTAGGTGATTCTGAT 57.717 33.333 0.00 0.00 0.00 2.90
2 3 7.307632 CCGCTTAGATGATTTTAGGTGATTCTG 60.308 40.741 0.00 0.00 0.00 3.02
4 5 6.073003 CCCGCTTAGATGATTTTAGGTGATTC 60.073 42.308 0.00 0.00 0.00 2.52
7 8 4.407621 TCCCGCTTAGATGATTTTAGGTGA 59.592 41.667 0.00 0.00 0.00 4.02
8 9 4.511826 GTCCCGCTTAGATGATTTTAGGTG 59.488 45.833 0.00 0.00 0.00 4.00
9 10 4.704965 GTCCCGCTTAGATGATTTTAGGT 58.295 43.478 0.00 0.00 0.00 3.08
10 11 3.741344 CGTCCCGCTTAGATGATTTTAGG 59.259 47.826 0.00 0.00 0.00 2.69
11 12 4.617959 TCGTCCCGCTTAGATGATTTTAG 58.382 43.478 0.00 0.00 0.00 1.85
12 13 4.659111 TCGTCCCGCTTAGATGATTTTA 57.341 40.909 0.00 0.00 0.00 1.52
15 16 3.195661 GTTTCGTCCCGCTTAGATGATT 58.804 45.455 0.00 0.00 0.00 2.57
16 17 2.483188 GGTTTCGTCCCGCTTAGATGAT 60.483 50.000 0.00 0.00 0.00 2.45
17 18 1.134907 GGTTTCGTCCCGCTTAGATGA 60.135 52.381 0.00 0.00 0.00 2.92
18 19 1.287425 GGTTTCGTCCCGCTTAGATG 58.713 55.000 0.00 0.00 0.00 2.90
19 20 0.899720 TGGTTTCGTCCCGCTTAGAT 59.100 50.000 0.00 0.00 0.00 1.98
20 21 0.680618 TTGGTTTCGTCCCGCTTAGA 59.319 50.000 0.00 0.00 0.00 2.10
21 22 1.076332 CTTGGTTTCGTCCCGCTTAG 58.924 55.000 0.00 0.00 0.00 2.18
22 23 0.680618 TCTTGGTTTCGTCCCGCTTA 59.319 50.000 0.00 0.00 0.00 3.09
23 24 0.179040 TTCTTGGTTTCGTCCCGCTT 60.179 50.000 0.00 0.00 0.00 4.68
24 25 0.036306 ATTCTTGGTTTCGTCCCGCT 59.964 50.000 0.00 0.00 0.00 5.52
25 26 1.729284 TATTCTTGGTTTCGTCCCGC 58.271 50.000 0.00 0.00 0.00 6.13
26 27 3.308866 GTGATATTCTTGGTTTCGTCCCG 59.691 47.826 0.00 0.00 0.00 5.14
27 28 3.626217 GGTGATATTCTTGGTTTCGTCCC 59.374 47.826 0.00 0.00 0.00 4.46
28 29 4.514401 AGGTGATATTCTTGGTTTCGTCC 58.486 43.478 0.00 0.00 0.00 4.79
29 30 4.571176 GGAGGTGATATTCTTGGTTTCGTC 59.429 45.833 0.00 0.00 0.00 4.20
30 31 4.514401 GGAGGTGATATTCTTGGTTTCGT 58.486 43.478 0.00 0.00 0.00 3.85
31 32 3.877508 GGGAGGTGATATTCTTGGTTTCG 59.122 47.826 0.00 0.00 0.00 3.46
32 33 5.117406 AGGGAGGTGATATTCTTGGTTTC 57.883 43.478 0.00 0.00 0.00 2.78
33 34 5.536497 AAGGGAGGTGATATTCTTGGTTT 57.464 39.130 0.00 0.00 0.00 3.27
34 35 5.536497 AAAGGGAGGTGATATTCTTGGTT 57.464 39.130 0.00 0.00 0.00 3.67
35 36 6.652205 TTAAAGGGAGGTGATATTCTTGGT 57.348 37.500 0.00 0.00 0.00 3.67
36 37 8.440771 ACTATTAAAGGGAGGTGATATTCTTGG 58.559 37.037 0.00 0.00 0.00 3.61
222 228 9.651913 TTTAGTTCAAAACATCTTTTGCTTCTT 57.348 25.926 1.63 0.00 44.14 2.52
563 580 7.408756 TTCAGCTTGCAAAGATTAATACCAT 57.591 32.000 0.00 0.00 41.66 3.55
734 751 2.703798 CCGGCCCAAGCATGTTCAG 61.704 63.158 0.00 0.00 42.56 3.02
870 890 6.678568 TTTACCCATTAATGGCCCATAATG 57.321 37.500 26.53 22.03 46.70 1.90
881 901 7.444487 GCTTCGTAGAAGGATTTACCCATTAAT 59.556 37.037 11.20 0.00 45.90 1.40
890 910 3.119245 ACGCAGCTTCGTAGAAGGATTTA 60.119 43.478 10.37 0.00 45.90 1.40
929 949 4.683671 GCTTCTAGGGCTAGTAAAGGGTTG 60.684 50.000 0.00 0.00 34.84 3.77
936 956 3.297736 GTCCTGCTTCTAGGGCTAGTAA 58.702 50.000 9.34 0.00 39.40 2.24
1012 1033 2.579518 GCGGCGTATTGCTTTGGC 60.580 61.111 9.37 0.00 45.43 4.52
1177 1208 2.157701 CGCTCGCTGACTCTCTTGC 61.158 63.158 0.00 0.00 0.00 4.01
1180 1211 0.675208 TTCTCGCTCGCTGACTCTCT 60.675 55.000 0.00 0.00 0.00 3.10
1181 1212 0.522495 GTTCTCGCTCGCTGACTCTC 60.522 60.000 0.00 0.00 0.00 3.20
1202 1233 2.752238 AGACAGACCTCTCCGGCG 60.752 66.667 0.00 0.00 35.61 6.46
1275 1306 1.301677 CCTTCAGCCCGTTCTTCTGC 61.302 60.000 0.00 0.00 0.00 4.26
1480 1511 2.686915 GGATGCATAAAACAGAGCTGCT 59.313 45.455 0.00 0.00 34.02 4.24
1511 1542 4.569943 CAGAGCCTCTAAAAGTGTAAGCA 58.430 43.478 0.00 0.00 0.00 3.91
1512 1543 3.372514 GCAGAGCCTCTAAAAGTGTAAGC 59.627 47.826 0.00 0.00 0.00 3.09
1519 1550 3.823304 ACCAAAAGCAGAGCCTCTAAAAG 59.177 43.478 0.00 0.00 0.00 2.27
1620 1651 3.914426 TTACCTGCTCTGGAGAAATCC 57.086 47.619 1.35 0.00 0.00 3.01
1630 1661 2.789409 AGGCGAAAATTACCTGCTCT 57.211 45.000 0.00 0.00 30.82 4.09
1642 1673 2.034066 CCCTGCAGGAAGGCGAAA 59.966 61.111 34.91 0.00 38.24 3.46
1694 1725 8.561738 TGTTTGATATCCTTGAAAACTACTCC 57.438 34.615 13.61 0.00 33.07 3.85
1838 1869 5.581085 GGATCATCGTTTGTTAGCTTGTACT 59.419 40.000 0.00 0.00 0.00 2.73
1935 1967 3.557577 TGTGAAAATGTGATCCAAGCG 57.442 42.857 0.00 0.00 0.00 4.68
1961 1993 3.630769 AGAATCCTACGCGATGTACAAGA 59.369 43.478 15.93 0.00 0.00 3.02
2163 2199 1.531058 CCCTGCAAATAAGTAACGCGC 60.531 52.381 5.73 0.00 0.00 6.86
2164 2200 1.063469 CCCCTGCAAATAAGTAACGCG 59.937 52.381 3.53 3.53 0.00 6.01
2167 2203 3.692690 TCCACCCCTGCAAATAAGTAAC 58.307 45.455 0.00 0.00 0.00 2.50
2250 2286 1.144708 TGGCAAAGGACCATCTCACAA 59.855 47.619 0.00 0.00 30.29 3.33
2520 2602 3.678289 TGCAAGATGCTTGTACAGACAT 58.322 40.909 11.30 11.30 45.31 3.06
2780 3091 4.964262 AGAGCTGAAATCAGAGAGAGGAAT 59.036 41.667 14.43 0.00 46.59 3.01
3573 3894 5.208121 TCAATCTGTTGAAAAGGAAAGGGT 58.792 37.500 0.00 0.00 41.22 4.34
4016 4339 3.004315 TGCTAGTTCTTTGCCTTTTTCGG 59.996 43.478 0.00 0.00 0.00 4.30
4135 4458 2.093711 CACCGACCACCTCATACAATCA 60.094 50.000 0.00 0.00 0.00 2.57
4208 4533 4.233123 TGCTTGCTGAGTCATGAAAAAG 57.767 40.909 0.00 0.00 0.00 2.27
4231 4556 6.739331 CCTAGAGGTTAGAGATCACCAAAT 57.261 41.667 3.04 0.00 35.25 2.32
4274 4599 5.139435 TCATGATCCTTGGTTAGCTATCG 57.861 43.478 0.00 0.00 0.00 2.92
4314 4639 1.303806 CCTAAACCCAACCCACCCG 60.304 63.158 0.00 0.00 0.00 5.28
4319 4644 2.791655 CAGACTTCCTAAACCCAACCC 58.208 52.381 0.00 0.00 0.00 4.11
4320 4645 2.160205 GCAGACTTCCTAAACCCAACC 58.840 52.381 0.00 0.00 0.00 3.77
4322 4647 3.073798 TCATGCAGACTTCCTAAACCCAA 59.926 43.478 0.00 0.00 0.00 4.12
4359 4726 2.457813 AACAGCAATATCCCATGGCA 57.542 45.000 6.09 0.00 0.00 4.92
4366 4733 5.123227 TGCTACCAGTAAACAGCAATATCC 58.877 41.667 0.00 0.00 40.87 2.59
4471 4840 6.016276 ACACAACCACAATTTCATCTAGGAAC 60.016 38.462 0.00 0.00 0.00 3.62
4481 4850 4.754322 ACCTTCAACACAACCACAATTTC 58.246 39.130 0.00 0.00 0.00 2.17
4498 4867 6.158598 TGCAAAAATCTGCTAATGAACCTTC 58.841 36.000 0.00 0.00 43.07 3.46
4524 4893 9.378551 ACTTGCGATGTAATGAAAATCTTACTA 57.621 29.630 0.00 0.00 0.00 1.82
4529 4898 6.500684 ACACTTGCGATGTAATGAAAATCT 57.499 33.333 0.00 0.00 0.00 2.40
4530 4899 6.801377 TGAACACTTGCGATGTAATGAAAATC 59.199 34.615 0.00 0.00 0.00 2.17
4532 4901 6.066054 TGAACACTTGCGATGTAATGAAAA 57.934 33.333 0.00 0.00 0.00 2.29
4541 4913 5.747565 TCTAAACTTTGAACACTTGCGATG 58.252 37.500 0.00 0.00 0.00 3.84
4567 4939 9.665719 AGGAGAAAAAGAATCTCATTTCTAGAC 57.334 33.333 18.07 13.38 44.13 2.59
4591 4964 9.683069 GCTTACCACATTTCATGAATTATAAGG 57.317 33.333 9.40 9.35 0.00 2.69
4597 4970 6.757237 TGTTGCTTACCACATTTCATGAATT 58.243 32.000 9.40 2.66 0.00 2.17
4598 4971 6.343716 TGTTGCTTACCACATTTCATGAAT 57.656 33.333 9.40 0.00 0.00 2.57
4616 4989 8.328146 GTTTTGATAAAAGAAGAAGGTTGTTGC 58.672 33.333 0.00 0.00 0.00 4.17
4645 5018 9.817809 TTCTCTAGAAATGCACGATTATTTAGT 57.182 29.630 0.00 0.00 0.00 2.24
4651 5024 9.647797 TTTAACTTCTCTAGAAATGCACGATTA 57.352 29.630 0.00 0.00 33.07 1.75
4652 5025 8.547967 TTTAACTTCTCTAGAAATGCACGATT 57.452 30.769 0.00 0.00 33.07 3.34
4653 5026 8.607459 CATTTAACTTCTCTAGAAATGCACGAT 58.393 33.333 0.00 0.00 32.51 3.73
4654 5027 7.602644 ACATTTAACTTCTCTAGAAATGCACGA 59.397 33.333 9.83 0.00 39.85 4.35
4655 5028 7.743104 ACATTTAACTTCTCTAGAAATGCACG 58.257 34.615 9.83 0.00 39.85 5.34
4656 5029 9.334693 CAACATTTAACTTCTCTAGAAATGCAC 57.665 33.333 9.83 0.00 39.85 4.57
4657 5030 8.514594 CCAACATTTAACTTCTCTAGAAATGCA 58.485 33.333 9.83 0.00 39.85 3.96
4721 5094 4.389890 ACGTGTAATATTACCCGCAAGA 57.610 40.909 24.42 3.48 37.92 3.02
4722 5095 4.330620 ACAACGTGTAATATTACCCGCAAG 59.669 41.667 24.42 17.84 37.92 4.01
4737 5110 4.109050 CCACAAGCATTTAAACAACGTGT 58.891 39.130 0.00 0.00 0.00 4.49
4783 5157 1.447140 GGCAGCCGTGTGTTCGATA 60.447 57.895 0.00 0.00 0.00 2.92
4792 5167 2.031012 TCTGAGTTGGCAGCCGTG 59.969 61.111 7.03 0.00 35.86 4.94
4820 5195 4.082136 ACGTAGAAAGACCCTGACTCATTC 60.082 45.833 0.00 0.00 0.00 2.67
4837 5212 8.970020 TGGATACCTTCAGTTTATAAACGTAGA 58.030 33.333 19.92 16.37 43.51 2.59
4840 5215 8.316214 TCTTGGATACCTTCAGTTTATAAACGT 58.684 33.333 19.92 14.37 43.51 3.99
4860 5235 1.338107 TCCGTTTCTGCTCTCTTGGA 58.662 50.000 0.00 0.00 0.00 3.53
4861 5236 2.005451 CATCCGTTTCTGCTCTCTTGG 58.995 52.381 0.00 0.00 0.00 3.61
4970 5349 4.735369 TGTTATGAAAATGTGGTGGAGGT 58.265 39.130 0.00 0.00 0.00 3.85
4972 5351 4.672542 CGCTGTTATGAAAATGTGGTGGAG 60.673 45.833 0.00 0.00 0.00 3.86
4973 5352 3.190327 CGCTGTTATGAAAATGTGGTGGA 59.810 43.478 0.00 0.00 0.00 4.02
4974 5353 3.057596 ACGCTGTTATGAAAATGTGGTGG 60.058 43.478 0.00 0.00 0.00 4.61
4975 5354 3.913763 CACGCTGTTATGAAAATGTGGTG 59.086 43.478 0.00 0.00 0.00 4.17
4976 5355 3.568007 ACACGCTGTTATGAAAATGTGGT 59.432 39.130 0.00 0.00 0.00 4.16
4977 5356 4.159377 ACACGCTGTTATGAAAATGTGG 57.841 40.909 0.00 0.00 0.00 4.17
4978 5357 5.107913 CCAAACACGCTGTTATGAAAATGTG 60.108 40.000 4.24 0.00 40.14 3.21
4979 5358 4.981674 CCAAACACGCTGTTATGAAAATGT 59.018 37.500 4.24 0.00 40.14 2.71
4980 5359 4.143347 GCCAAACACGCTGTTATGAAAATG 60.143 41.667 4.24 0.00 40.14 2.32
4981 5360 3.987220 GCCAAACACGCTGTTATGAAAAT 59.013 39.130 4.24 0.00 40.14 1.82
4982 5361 3.067461 AGCCAAACACGCTGTTATGAAAA 59.933 39.130 4.24 0.00 40.14 2.29
4983 5362 2.621055 AGCCAAACACGCTGTTATGAAA 59.379 40.909 4.24 0.00 40.14 2.69
4984 5363 2.226330 AGCCAAACACGCTGTTATGAA 58.774 42.857 4.24 0.00 40.14 2.57
4985 5364 1.890876 AGCCAAACACGCTGTTATGA 58.109 45.000 4.24 0.00 40.14 2.15
4986 5365 2.482336 TGTAGCCAAACACGCTGTTATG 59.518 45.455 4.24 5.49 40.14 1.90
4987 5366 2.773487 TGTAGCCAAACACGCTGTTAT 58.227 42.857 4.24 0.00 40.14 1.89
4988 5367 2.242047 TGTAGCCAAACACGCTGTTA 57.758 45.000 4.24 0.00 40.14 2.41
4989 5368 1.064952 GTTGTAGCCAAACACGCTGTT 59.935 47.619 0.00 0.00 43.41 3.16
4990 5369 0.661020 GTTGTAGCCAAACACGCTGT 59.339 50.000 0.00 0.00 37.12 4.40
4991 5370 0.384230 CGTTGTAGCCAAACACGCTG 60.384 55.000 0.00 0.00 37.12 5.18
4992 5371 1.503818 CCGTTGTAGCCAAACACGCT 61.504 55.000 0.00 0.00 40.45 5.07
4993 5372 1.082366 CCGTTGTAGCCAAACACGC 60.082 57.895 0.00 0.00 30.94 5.34
4994 5373 1.572447 CCCGTTGTAGCCAAACACG 59.428 57.895 0.00 0.00 30.94 4.49
4995 5374 0.535553 TCCCCGTTGTAGCCAAACAC 60.536 55.000 0.00 0.00 30.94 3.32
4996 5375 0.183014 TTCCCCGTTGTAGCCAAACA 59.817 50.000 0.00 0.00 30.94 2.83
4997 5376 1.320507 TTTCCCCGTTGTAGCCAAAC 58.679 50.000 0.00 0.00 30.94 2.93
4998 5377 1.889829 CATTTCCCCGTTGTAGCCAAA 59.110 47.619 0.00 0.00 30.94 3.28
4999 5378 1.540267 CATTTCCCCGTTGTAGCCAA 58.460 50.000 0.00 0.00 0.00 4.52
5000 5379 0.322997 CCATTTCCCCGTTGTAGCCA 60.323 55.000 0.00 0.00 0.00 4.75
5001 5380 0.034863 TCCATTTCCCCGTTGTAGCC 60.035 55.000 0.00 0.00 0.00 3.93
5002 5381 1.828979 TTCCATTTCCCCGTTGTAGC 58.171 50.000 0.00 0.00 0.00 3.58
5003 5382 3.130340 CCAATTCCATTTCCCCGTTGTAG 59.870 47.826 0.00 0.00 0.00 2.74
5004 5383 3.093057 CCAATTCCATTTCCCCGTTGTA 58.907 45.455 0.00 0.00 0.00 2.41
5005 5384 1.899142 CCAATTCCATTTCCCCGTTGT 59.101 47.619 0.00 0.00 0.00 3.32
5006 5385 2.166254 CTCCAATTCCATTTCCCCGTTG 59.834 50.000 0.00 0.00 0.00 4.10
5007 5386 2.225267 ACTCCAATTCCATTTCCCCGTT 60.225 45.455 0.00 0.00 0.00 4.44
5008 5387 1.357761 ACTCCAATTCCATTTCCCCGT 59.642 47.619 0.00 0.00 0.00 5.28
5009 5388 2.143876 ACTCCAATTCCATTTCCCCG 57.856 50.000 0.00 0.00 0.00 5.73
5010 5389 4.775253 TGTAAACTCCAATTCCATTTCCCC 59.225 41.667 0.00 0.00 0.00 4.81
5011 5390 5.993748 TGTAAACTCCAATTCCATTTCCC 57.006 39.130 0.00 0.00 0.00 3.97
5012 5391 6.813152 CACATGTAAACTCCAATTCCATTTCC 59.187 38.462 0.00 0.00 0.00 3.13
5013 5392 6.813152 CCACATGTAAACTCCAATTCCATTTC 59.187 38.462 0.00 0.00 0.00 2.17
5072 5462 4.268405 CAGCACACACCAAACTTTGAATTC 59.732 41.667 2.87 0.00 0.00 2.17
5078 5468 0.823460 CCCAGCACACACCAAACTTT 59.177 50.000 0.00 0.00 0.00 2.66
5110 5500 4.083057 GGAGTGTTGCTTCCTCTCAAATTC 60.083 45.833 0.00 0.00 0.00 2.17
5125 5515 2.805671 TGTTAAGTCGCATGGAGTGTTG 59.194 45.455 0.00 0.00 0.00 3.33
5130 5520 2.009774 CCCTTGTTAAGTCGCATGGAG 58.990 52.381 0.00 0.00 33.35 3.86
5131 5521 1.948611 GCCCTTGTTAAGTCGCATGGA 60.949 52.381 0.00 0.00 33.35 3.41
5135 5525 1.669760 CCGCCCTTGTTAAGTCGCA 60.670 57.895 0.00 0.00 0.00 5.10
5140 5530 2.107950 TCATGTCCGCCCTTGTTAAG 57.892 50.000 0.00 0.00 0.00 1.85
5151 5541 4.028852 TCACGTATCTCTTTCATGTCCG 57.971 45.455 0.00 0.00 0.00 4.79
5207 5597 3.152341 GCATGGGAACTCAAGGGATATG 58.848 50.000 0.00 0.00 0.00 1.78
5208 5598 2.108952 GGCATGGGAACTCAAGGGATAT 59.891 50.000 0.00 0.00 0.00 1.63
5215 5605 3.737559 ATTAGTGGCATGGGAACTCAA 57.262 42.857 0.00 0.00 0.00 3.02
5216 5606 3.737559 AATTAGTGGCATGGGAACTCA 57.262 42.857 0.00 0.00 0.00 3.41
5219 5609 3.381590 GGAGAAATTAGTGGCATGGGAAC 59.618 47.826 0.00 0.00 0.00 3.62
5233 5623 3.647590 AGCATGTTTGGTTGGGAGAAATT 59.352 39.130 0.00 0.00 0.00 1.82
5250 5640 2.917701 TTGGTCGCATTTACAGCATG 57.082 45.000 0.00 0.00 46.00 4.06
5253 5643 2.989422 ACTTTGGTCGCATTTACAGC 57.011 45.000 0.00 0.00 0.00 4.40
5264 5654 6.035975 CAAACAAAGATGTCCAAACTTTGGTC 59.964 38.462 18.32 14.06 46.30 4.02
5273 5663 9.092876 GTTCAAAATACAAACAAAGATGTCCAA 57.907 29.630 0.00 0.00 39.40 3.53
5278 5668 9.904647 CAACAGTTCAAAATACAAACAAAGATG 57.095 29.630 0.00 0.00 0.00 2.90
5296 5686 8.682128 TTTTCATAACAGAACAACAACAGTTC 57.318 30.769 0.00 0.00 44.32 3.01
5330 5720 0.328258 CCCCCAACTGAGAATTCGGT 59.672 55.000 0.00 0.00 44.87 4.69
5331 5721 3.175133 CCCCCAACTGAGAATTCGG 57.825 57.895 0.00 0.00 35.72 4.30
5346 5736 3.656457 TTTTTCTCCTTACGCCCCC 57.344 52.632 0.00 0.00 0.00 5.40
5369 5759 2.280797 TGAGGTTGTGCTCGCCAC 60.281 61.111 0.00 0.00 44.90 5.01
5370 5760 1.830587 ATCTGAGGTTGTGCTCGCCA 61.831 55.000 2.76 0.00 0.00 5.69
5371 5761 1.078848 ATCTGAGGTTGTGCTCGCC 60.079 57.895 0.00 0.00 0.00 5.54
5372 5762 0.390340 TGATCTGAGGTTGTGCTCGC 60.390 55.000 0.00 0.00 0.00 5.03
5373 5763 2.084610 TTGATCTGAGGTTGTGCTCG 57.915 50.000 0.00 0.00 0.00 5.03
5374 5764 5.382618 AATTTTGATCTGAGGTTGTGCTC 57.617 39.130 0.00 0.00 0.00 4.26
5375 5765 6.899393 TTAATTTTGATCTGAGGTTGTGCT 57.101 33.333 0.00 0.00 0.00 4.40
5376 5766 7.814107 TCATTTAATTTTGATCTGAGGTTGTGC 59.186 33.333 0.00 0.00 0.00 4.57
5377 5767 9.132521 GTCATTTAATTTTGATCTGAGGTTGTG 57.867 33.333 0.00 0.00 0.00 3.33
5378 5768 8.023128 CGTCATTTAATTTTGATCTGAGGTTGT 58.977 33.333 0.00 0.00 0.00 3.32
5379 5769 8.236586 TCGTCATTTAATTTTGATCTGAGGTTG 58.763 33.333 0.00 0.00 0.00 3.77
5380 5770 8.335532 TCGTCATTTAATTTTGATCTGAGGTT 57.664 30.769 0.00 0.00 0.00 3.50
5381 5771 7.921786 TCGTCATTTAATTTTGATCTGAGGT 57.078 32.000 0.00 0.00 0.00 3.85
5382 5772 9.443283 GATTCGTCATTTAATTTTGATCTGAGG 57.557 33.333 0.00 0.00 0.00 3.86
5388 5778 9.927668 ACCAAAGATTCGTCATTTAATTTTGAT 57.072 25.926 0.00 0.00 0.00 2.57
5399 5789 9.326413 CCTATTAAGTTACCAAAGATTCGTCAT 57.674 33.333 0.00 0.00 0.00 3.06
5400 5790 7.767198 CCCTATTAAGTTACCAAAGATTCGTCA 59.233 37.037 0.00 0.00 0.00 4.35
5401 5791 7.983484 TCCCTATTAAGTTACCAAAGATTCGTC 59.017 37.037 0.00 0.00 0.00 4.20
5402 5792 7.854337 TCCCTATTAAGTTACCAAAGATTCGT 58.146 34.615 0.00 0.00 0.00 3.85
5403 5793 7.041984 GCTCCCTATTAAGTTACCAAAGATTCG 60.042 40.741 0.00 0.00 0.00 3.34
5404 5794 7.773690 TGCTCCCTATTAAGTTACCAAAGATTC 59.226 37.037 0.00 0.00 0.00 2.52
5405 5795 7.556635 GTGCTCCCTATTAAGTTACCAAAGATT 59.443 37.037 0.00 0.00 0.00 2.40
5406 5796 7.054751 GTGCTCCCTATTAAGTTACCAAAGAT 58.945 38.462 0.00 0.00 0.00 2.40
5407 5797 6.013206 TGTGCTCCCTATTAAGTTACCAAAGA 60.013 38.462 0.00 0.00 0.00 2.52
5408 5798 6.177610 TGTGCTCCCTATTAAGTTACCAAAG 58.822 40.000 0.00 0.00 0.00 2.77
5409 5799 6.129414 TGTGCTCCCTATTAAGTTACCAAA 57.871 37.500 0.00 0.00 0.00 3.28
5410 5800 5.765576 TGTGCTCCCTATTAAGTTACCAA 57.234 39.130 0.00 0.00 0.00 3.67
5411 5801 5.765576 TTGTGCTCCCTATTAAGTTACCA 57.234 39.130 0.00 0.00 0.00 3.25
5412 5802 6.592870 AGATTGTGCTCCCTATTAAGTTACC 58.407 40.000 0.00 0.00 0.00 2.85
5413 5803 7.042658 CGAAGATTGTGCTCCCTATTAAGTTAC 60.043 40.741 0.00 0.00 0.00 2.50
5414 5804 6.984474 CGAAGATTGTGCTCCCTATTAAGTTA 59.016 38.462 0.00 0.00 0.00 2.24
5415 5805 5.817816 CGAAGATTGTGCTCCCTATTAAGTT 59.182 40.000 0.00 0.00 0.00 2.66
5416 5806 5.360591 CGAAGATTGTGCTCCCTATTAAGT 58.639 41.667 0.00 0.00 0.00 2.24
5417 5807 4.212214 GCGAAGATTGTGCTCCCTATTAAG 59.788 45.833 0.00 0.00 0.00 1.85
5418 5808 4.127171 GCGAAGATTGTGCTCCCTATTAA 58.873 43.478 0.00 0.00 0.00 1.40
5419 5809 3.388024 AGCGAAGATTGTGCTCCCTATTA 59.612 43.478 0.00 0.00 32.44 0.98
5420 5810 2.171448 AGCGAAGATTGTGCTCCCTATT 59.829 45.455 0.00 0.00 32.44 1.73
5421 5811 1.765314 AGCGAAGATTGTGCTCCCTAT 59.235 47.619 0.00 0.00 32.44 2.57
5422 5812 1.195115 AGCGAAGATTGTGCTCCCTA 58.805 50.000 0.00 0.00 32.44 3.53
5423 5813 0.326264 AAGCGAAGATTGTGCTCCCT 59.674 50.000 0.00 0.00 38.17 4.20
5424 5814 2.024176 TAAGCGAAGATTGTGCTCCC 57.976 50.000 0.00 0.00 36.12 4.30
5425 5815 3.062774 GTCTTAAGCGAAGATTGTGCTCC 59.937 47.826 7.28 0.00 45.96 4.70
5426 5816 3.062774 GGTCTTAAGCGAAGATTGTGCTC 59.937 47.826 7.28 0.00 45.96 4.26
5427 5817 3.003480 GGTCTTAAGCGAAGATTGTGCT 58.997 45.455 7.28 0.00 45.96 4.40
5428 5818 2.742053 TGGTCTTAAGCGAAGATTGTGC 59.258 45.455 7.28 0.00 45.96 4.57
5429 5819 4.452455 ACTTGGTCTTAAGCGAAGATTGTG 59.548 41.667 20.15 3.03 45.96 3.33
5430 5820 4.642429 ACTTGGTCTTAAGCGAAGATTGT 58.358 39.130 20.15 4.62 45.96 2.71
5431 5821 6.721571 TTACTTGGTCTTAAGCGAAGATTG 57.278 37.500 20.15 4.18 45.96 2.67
5432 5822 7.923414 ATTTACTTGGTCTTAAGCGAAGATT 57.077 32.000 20.15 8.31 45.96 2.40
5433 5823 9.099454 CTTATTTACTTGGTCTTAAGCGAAGAT 57.901 33.333 20.15 11.02 45.96 2.40
5434 5824 8.092687 ACTTATTTACTTGGTCTTAAGCGAAGA 58.907 33.333 20.15 0.43 42.13 2.87
5435 5825 8.252964 ACTTATTTACTTGGTCTTAAGCGAAG 57.747 34.615 15.07 15.07 36.38 3.79
5436 5826 8.611654 AACTTATTTACTTGGTCTTAAGCGAA 57.388 30.769 0.00 0.00 0.00 4.70
5437 5827 8.611654 AAACTTATTTACTTGGTCTTAAGCGA 57.388 30.769 0.00 0.00 0.00 4.93
5448 5838 9.503427 GCCTGCTTACATAAACTTATTTACTTG 57.497 33.333 0.00 0.00 33.09 3.16
5449 5839 9.462606 AGCCTGCTTACATAAACTTATTTACTT 57.537 29.630 0.00 0.00 33.09 2.24
5456 5846 9.982651 CTCTTATAGCCTGCTTACATAAACTTA 57.017 33.333 0.00 0.00 0.00 2.24
5457 5847 8.487028 ACTCTTATAGCCTGCTTACATAAACTT 58.513 33.333 0.00 0.00 0.00 2.66
5458 5848 8.024145 ACTCTTATAGCCTGCTTACATAAACT 57.976 34.615 0.00 0.00 0.00 2.66
5459 5849 8.664211 AACTCTTATAGCCTGCTTACATAAAC 57.336 34.615 0.00 0.00 0.00 2.01
5463 5853 9.853177 ATTTTAACTCTTATAGCCTGCTTACAT 57.147 29.630 0.00 0.00 0.00 2.29
5464 5854 9.109393 CATTTTAACTCTTATAGCCTGCTTACA 57.891 33.333 0.00 0.00 0.00 2.41
5465 5855 9.110502 ACATTTTAACTCTTATAGCCTGCTTAC 57.889 33.333 0.00 0.00 0.00 2.34
5466 5856 9.681062 AACATTTTAACTCTTATAGCCTGCTTA 57.319 29.630 0.00 0.00 0.00 3.09
5467 5857 8.581253 AACATTTTAACTCTTATAGCCTGCTT 57.419 30.769 0.00 0.00 0.00 3.91
5468 5858 9.853177 ATAACATTTTAACTCTTATAGCCTGCT 57.147 29.630 0.00 0.00 0.00 4.24
5479 5869 9.391006 TCAGCCGAAATATAACATTTTAACTCT 57.609 29.630 0.00 0.00 0.00 3.24
5480 5870 9.434559 GTCAGCCGAAATATAACATTTTAACTC 57.565 33.333 0.00 0.00 0.00 3.01
5481 5871 8.952278 TGTCAGCCGAAATATAACATTTTAACT 58.048 29.630 0.00 0.00 0.00 2.24
5482 5872 9.730420 ATGTCAGCCGAAATATAACATTTTAAC 57.270 29.630 0.00 0.00 0.00 2.01
5483 5873 9.729023 CATGTCAGCCGAAATATAACATTTTAA 57.271 29.630 0.00 0.00 0.00 1.52
5484 5874 8.349245 CCATGTCAGCCGAAATATAACATTTTA 58.651 33.333 0.00 0.00 0.00 1.52
5485 5875 7.068103 TCCATGTCAGCCGAAATATAACATTTT 59.932 33.333 0.00 0.00 0.00 1.82
5486 5876 6.545666 TCCATGTCAGCCGAAATATAACATTT 59.454 34.615 0.00 0.00 0.00 2.32
5487 5877 6.061441 TCCATGTCAGCCGAAATATAACATT 58.939 36.000 0.00 0.00 0.00 2.71
5488 5878 5.620206 TCCATGTCAGCCGAAATATAACAT 58.380 37.500 0.00 0.00 0.00 2.71
5489 5879 5.029807 TCCATGTCAGCCGAAATATAACA 57.970 39.130 0.00 0.00 0.00 2.41
5490 5880 4.452455 CCTCCATGTCAGCCGAAATATAAC 59.548 45.833 0.00 0.00 0.00 1.89
5491 5881 4.504864 CCCTCCATGTCAGCCGAAATATAA 60.505 45.833 0.00 0.00 0.00 0.98
5492 5882 3.007940 CCCTCCATGTCAGCCGAAATATA 59.992 47.826 0.00 0.00 0.00 0.86
5493 5883 2.224621 CCCTCCATGTCAGCCGAAATAT 60.225 50.000 0.00 0.00 0.00 1.28
5494 5884 1.140852 CCCTCCATGTCAGCCGAAATA 59.859 52.381 0.00 0.00 0.00 1.40
5495 5885 0.107017 CCCTCCATGTCAGCCGAAAT 60.107 55.000 0.00 0.00 0.00 2.17
5496 5886 1.299648 CCCTCCATGTCAGCCGAAA 59.700 57.895 0.00 0.00 0.00 3.46
5497 5887 2.669133 CCCCTCCATGTCAGCCGAA 61.669 63.158 0.00 0.00 0.00 4.30
5498 5888 3.083349 CCCCTCCATGTCAGCCGA 61.083 66.667 0.00 0.00 0.00 5.54
5499 5889 3.083349 TCCCCTCCATGTCAGCCG 61.083 66.667 0.00 0.00 0.00 5.52
5500 5890 2.750657 CCTCCCCTCCATGTCAGCC 61.751 68.421 0.00 0.00 0.00 4.85
5501 5891 2.750657 CCCTCCCCTCCATGTCAGC 61.751 68.421 0.00 0.00 0.00 4.26
5502 5892 0.621571 TTCCCTCCCCTCCATGTCAG 60.622 60.000 0.00 0.00 0.00 3.51
5503 5893 0.621571 CTTCCCTCCCCTCCATGTCA 60.622 60.000 0.00 0.00 0.00 3.58
5504 5894 0.326618 TCTTCCCTCCCCTCCATGTC 60.327 60.000 0.00 0.00 0.00 3.06
5505 5895 0.327000 CTCTTCCCTCCCCTCCATGT 60.327 60.000 0.00 0.00 0.00 3.21
5506 5896 1.059006 CCTCTTCCCTCCCCTCCATG 61.059 65.000 0.00 0.00 0.00 3.66
5507 5897 1.238896 TCCTCTTCCCTCCCCTCCAT 61.239 60.000 0.00 0.00 0.00 3.41
5508 5898 1.866997 TCCTCTTCCCTCCCCTCCA 60.867 63.158 0.00 0.00 0.00 3.86
5509 5899 1.074850 CTCCTCTTCCCTCCCCTCC 60.075 68.421 0.00 0.00 0.00 4.30
5510 5900 0.397957 GTCTCCTCTTCCCTCCCCTC 60.398 65.000 0.00 0.00 0.00 4.30
5511 5901 1.156322 TGTCTCCTCTTCCCTCCCCT 61.156 60.000 0.00 0.00 0.00 4.79
5512 5902 0.689412 CTGTCTCCTCTTCCCTCCCC 60.689 65.000 0.00 0.00 0.00 4.81
5513 5903 0.336737 TCTGTCTCCTCTTCCCTCCC 59.663 60.000 0.00 0.00 0.00 4.30
5514 5904 2.239681 TTCTGTCTCCTCTTCCCTCC 57.760 55.000 0.00 0.00 0.00 4.30
5515 5905 3.895041 CCTATTCTGTCTCCTCTTCCCTC 59.105 52.174 0.00 0.00 0.00 4.30
5516 5906 3.533907 TCCTATTCTGTCTCCTCTTCCCT 59.466 47.826 0.00 0.00 0.00 4.20
5517 5907 3.895041 CTCCTATTCTGTCTCCTCTTCCC 59.105 52.174 0.00 0.00 0.00 3.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.