Multiple sequence alignment - TraesCS2D01G512000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G512000 chr2D 100.000 4177 0 0 1 4177 603503824 603499648 0.000000e+00 7714.0
1 TraesCS2D01G512000 chr2D 93.561 761 48 1 2525 3284 603401147 603400387 0.000000e+00 1133.0
2 TraesCS2D01G512000 chr2D 89.195 907 56 17 2557 3452 603542765 603543640 0.000000e+00 1094.0
3 TraesCS2D01G512000 chr2D 88.568 901 80 10 3279 4177 603400175 603399296 0.000000e+00 1072.0
4 TraesCS2D01G512000 chr2D 91.994 662 46 3 2517 3178 603379424 603378770 0.000000e+00 922.0
5 TraesCS2D01G512000 chr2D 86.776 673 61 12 2514 3180 641184212 641184862 0.000000e+00 725.0
6 TraesCS2D01G512000 chr2D 95.215 418 19 1 985 1401 603381060 603380643 0.000000e+00 660.0
7 TraesCS2D01G512000 chr2D 92.381 420 32 0 982 1401 603541104 603541523 2.150000e-167 599.0
8 TraesCS2D01G512000 chr2D 81.498 227 25 7 1 219 603503617 603503834 2.000000e-38 171.0
9 TraesCS2D01G512000 chr2D 96.721 61 2 0 101 161 603503784 603503724 7.390000e-18 102.0
10 TraesCS2D01G512000 chr2D 95.652 46 0 2 399 442 603503397 603503352 5.790000e-09 73.1
11 TraesCS2D01G512000 chr2D 95.652 46 0 2 428 473 603503426 603503383 5.790000e-09 73.1
12 TraesCS2D01G512000 chr2B 88.049 1481 106 35 495 1936 734051426 734049978 0.000000e+00 1688.0
13 TraesCS2D01G512000 chr2B 90.124 1286 100 17 2152 3422 734049640 734048367 0.000000e+00 1646.0
14 TraesCS2D01G512000 chr2B 91.538 910 59 3 2557 3463 733890719 733889825 0.000000e+00 1238.0
15 TraesCS2D01G512000 chr2B 90.843 688 59 1 2557 3240 733971411 733970724 0.000000e+00 918.0
16 TraesCS2D01G512000 chr2B 93.301 418 27 1 985 1401 733862872 733862455 2.130000e-172 616.0
17 TraesCS2D01G512000 chr2B 92.908 423 30 0 985 1407 733892249 733891827 2.130000e-172 616.0
18 TraesCS2D01G512000 chr2B 91.879 431 32 3 992 1421 733973258 733972830 2.150000e-167 599.0
19 TraesCS2D01G512000 chr2B 81.623 653 89 16 3529 4174 733889534 733888906 2.880000e-141 512.0
20 TraesCS2D01G512000 chr2B 89.113 248 20 5 3232 3473 733969266 733969020 6.790000e-78 302.0
21 TraesCS2D01G512000 chr2B 86.310 168 13 8 1934 2092 734049809 734049643 1.540000e-39 174.0
22 TraesCS2D01G512000 chr2B 87.500 104 10 3 110 211 657842261 657842363 2.640000e-22 117.0
23 TraesCS2D01G512000 chr2A 89.023 1321 86 32 2152 3456 735702098 735700821 0.000000e+00 1581.0
24 TraesCS2D01G512000 chr2A 86.754 1291 100 37 679 1936 735703742 735702490 0.000000e+00 1371.0
25 TraesCS2D01G512000 chr2A 84.677 1364 125 39 2557 3903 735763135 735764431 0.000000e+00 1284.0
26 TraesCS2D01G512000 chr2A 89.945 726 59 10 2557 3276 735600987 735600270 0.000000e+00 924.0
27 TraesCS2D01G512000 chr2A 87.480 631 58 5 2550 3180 766446461 766447070 0.000000e+00 708.0
28 TraesCS2D01G512000 chr2A 88.321 548 61 2 3630 4177 735697145 735696601 0.000000e+00 654.0
29 TraesCS2D01G512000 chr2A 93.510 416 27 0 986 1401 735761432 735761847 1.650000e-173 619.0
30 TraesCS2D01G512000 chr2A 92.978 413 29 0 995 1407 735602876 735602464 1.660000e-168 603.0
31 TraesCS2D01G512000 chr2A 90.860 186 10 6 430 612 735703929 735703748 4.170000e-60 243.0
32 TraesCS2D01G512000 chr2A 89.344 122 11 2 1973 2092 735702222 735702101 7.230000e-33 152.0
33 TraesCS2D01G512000 chr2A 89.041 73 7 1 253 325 735704046 735703975 5.750000e-14 89.8
34 TraesCS2D01G512000 chr2A 80.672 119 18 4 112 228 553484291 553484406 2.070000e-13 87.9
35 TraesCS2D01G512000 chr2A 93.333 45 3 0 213 257 735704107 735704063 2.700000e-07 67.6
36 TraesCS2D01G512000 chr2A 96.970 33 0 1 3871 3903 387281 387250 2.000000e-03 54.7
37 TraesCS2D01G512000 chr2A 96.970 33 0 1 3871 3903 444007833 444007802 2.000000e-03 54.7
38 TraesCS2D01G512000 chr3B 90.566 106 6 4 1 102 318661232 318661127 2.030000e-28 137.0
39 TraesCS2D01G512000 chr3B 86.408 103 10 3 110 211 318661136 318661235 4.420000e-20 110.0
40 TraesCS2D01G512000 chr5D 87.255 102 11 2 1 102 384596518 384596617 9.490000e-22 115.0
41 TraesCS2D01G512000 chr5D 86.275 102 12 2 1 102 79434658 79434559 4.420000e-20 110.0
42 TraesCS2D01G512000 chr5D 86.275 102 12 2 1 102 318353557 318353458 4.420000e-20 110.0
43 TraesCS2D01G512000 chr5D 86.275 102 12 2 1 102 377038668 377038569 4.420000e-20 110.0
44 TraesCS2D01G512000 chr5D 95.238 63 1 2 167 229 389438752 389438812 9.560000e-17 99.0
45 TraesCS2D01G512000 chr5D 84.000 75 7 4 124 197 440118499 440118429 2.700000e-07 67.6
46 TraesCS2D01G512000 chr7A 86.667 105 11 1 110 211 148478751 148478855 3.410000e-21 113.0
47 TraesCS2D01G512000 chr7A 96.970 33 0 1 3871 3903 54979854 54979885 2.000000e-03 54.7
48 TraesCS2D01G512000 chr7A 100.000 29 0 0 3875 3903 103214069 103214041 2.000000e-03 54.7
49 TraesCS2D01G512000 chr7D 86.275 102 12 2 1 102 67910306 67910207 4.420000e-20 110.0
50 TraesCS2D01G512000 chr7D 86.275 102 12 2 1 102 438149701 438149602 4.420000e-20 110.0
51 TraesCS2D01G512000 chr7D 86.275 102 12 2 1 102 535267749 535267848 4.420000e-20 110.0
52 TraesCS2D01G512000 chr7D 84.270 89 10 4 124 211 598336420 598336505 2.680000e-12 84.2
53 TraesCS2D01G512000 chr7D 96.970 33 0 1 3871 3903 106594906 106594937 2.000000e-03 54.7
54 TraesCS2D01G512000 chr6A 86.408 103 11 3 1 102 558188548 558188648 4.420000e-20 110.0
55 TraesCS2D01G512000 chr6A 96.970 33 0 1 3871 3903 579055446 579055477 2.000000e-03 54.7
56 TraesCS2D01G512000 chr4D 86.275 102 10 4 112 211 293614079 293613980 1.590000e-19 108.0
57 TraesCS2D01G512000 chr7B 88.889 72 4 4 161 229 351909275 351909205 7.440000e-13 86.1
58 TraesCS2D01G512000 chr7B 81.609 87 13 3 127 211 525000410 525000495 7.490000e-08 69.4
59 TraesCS2D01G512000 chr5A 94.737 38 1 1 3866 3903 687686196 687686232 1.620000e-04 58.4
60 TraesCS2D01G512000 chr4B 92.500 40 1 2 100 139 618338571 618338608 5.830000e-04 56.5
61 TraesCS2D01G512000 chr4B 100.000 29 0 0 3875 3903 507690628 507690600 2.000000e-03 54.7
62 TraesCS2D01G512000 chr1D 96.970 33 0 1 3871 3903 293604470 293604439 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G512000 chr2D 603499648 603503824 4176 True 1990.550000 7714 97.006250 1 4177 4 chr2D.!!$R3 4176
1 TraesCS2D01G512000 chr2D 603399296 603401147 1851 True 1102.500000 1133 91.064500 2525 4177 2 chr2D.!!$R2 1652
2 TraesCS2D01G512000 chr2D 603541104 603543640 2536 False 846.500000 1094 90.788000 982 3452 2 chr2D.!!$F3 2470
3 TraesCS2D01G512000 chr2D 603378770 603381060 2290 True 791.000000 922 93.604500 985 3178 2 chr2D.!!$R1 2193
4 TraesCS2D01G512000 chr2D 641184212 641184862 650 False 725.000000 725 86.776000 2514 3180 1 chr2D.!!$F2 666
5 TraesCS2D01G512000 chr2B 734048367 734051426 3059 True 1169.333333 1688 88.161000 495 3422 3 chr2B.!!$R4 2927
6 TraesCS2D01G512000 chr2B 733888906 733892249 3343 True 788.666667 1238 88.689667 985 4174 3 chr2B.!!$R2 3189
7 TraesCS2D01G512000 chr2B 733969020 733973258 4238 True 606.333333 918 90.611667 992 3473 3 chr2B.!!$R3 2481
8 TraesCS2D01G512000 chr2A 735761432 735764431 2999 False 951.500000 1284 89.093500 986 3903 2 chr2A.!!$F3 2917
9 TraesCS2D01G512000 chr2A 735600270 735602876 2606 True 763.500000 924 91.461500 995 3276 2 chr2A.!!$R3 2281
10 TraesCS2D01G512000 chr2A 766446461 766447070 609 False 708.000000 708 87.480000 2550 3180 1 chr2A.!!$F2 630
11 TraesCS2D01G512000 chr2A 735696601 735704107 7506 True 594.057143 1581 89.525143 213 4177 7 chr2A.!!$R4 3964

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
275 297 0.032678 AGCGTCACTGTTCTGGTCTG 59.967 55.0 0.0 0.0 0.00 3.51 F
1831 1977 0.391661 TGCTTCGATCCTGCAAGTCC 60.392 55.0 0.0 0.0 33.48 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1994 2878 0.041576 CGCATGCGACAAGATGGATG 60.042 55.0 35.82 0.0 42.83 3.51 R
3517 6259 0.106967 GAAGAAGTCATGGGGAGGGC 60.107 60.0 0.00 0.0 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.992564 TCCCTCCATTCCAAAATAGATGA 57.007 39.130 0.00 0.00 0.00 2.92
23 24 5.694995 TCCCTCCATTCCAAAATAGATGAC 58.305 41.667 0.00 0.00 0.00 3.06
24 25 4.829492 CCCTCCATTCCAAAATAGATGACC 59.171 45.833 0.00 0.00 0.00 4.02
25 26 4.829492 CCTCCATTCCAAAATAGATGACCC 59.171 45.833 0.00 0.00 0.00 4.46
26 27 5.448654 CTCCATTCCAAAATAGATGACCCA 58.551 41.667 0.00 0.00 0.00 4.51
27 28 5.836705 TCCATTCCAAAATAGATGACCCAA 58.163 37.500 0.00 0.00 0.00 4.12
28 29 5.656416 TCCATTCCAAAATAGATGACCCAAC 59.344 40.000 0.00 0.00 0.00 3.77
29 30 5.658190 CCATTCCAAAATAGATGACCCAACT 59.342 40.000 0.00 0.00 0.00 3.16
30 31 6.155049 CCATTCCAAAATAGATGACCCAACTT 59.845 38.462 0.00 0.00 0.00 2.66
31 32 7.310609 CCATTCCAAAATAGATGACCCAACTTT 60.311 37.037 0.00 0.00 0.00 2.66
32 33 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
33 34 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
34 35 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
35 36 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
36 37 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
37 38 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
38 39 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
39 40 8.788325 AATAGATGACCCAACTTTGTACTAAC 57.212 34.615 0.00 0.00 0.00 2.34
40 41 6.435292 AGATGACCCAACTTTGTACTAACT 57.565 37.500 0.00 0.00 0.00 2.24
41 42 6.838382 AGATGACCCAACTTTGTACTAACTT 58.162 36.000 0.00 0.00 0.00 2.66
42 43 7.970102 AGATGACCCAACTTTGTACTAACTTA 58.030 34.615 0.00 0.00 0.00 2.24
43 44 8.434392 AGATGACCCAACTTTGTACTAACTTAA 58.566 33.333 0.00 0.00 0.00 1.85
44 45 9.227777 GATGACCCAACTTTGTACTAACTTAAT 57.772 33.333 0.00 0.00 0.00 1.40
46 47 9.492973 TGACCCAACTTTGTACTAACTTAATAC 57.507 33.333 0.00 0.00 0.00 1.89
47 48 9.492973 GACCCAACTTTGTACTAACTTAATACA 57.507 33.333 0.00 0.00 0.00 2.29
186 187 9.492973 TGTATTAAGTTAGTACAAAGTTGGGTC 57.507 33.333 14.01 0.00 29.46 4.46
187 188 9.492973 GTATTAAGTTAGTACAAAGTTGGGTCA 57.507 33.333 9.92 0.00 0.00 4.02
189 190 8.611654 TTAAGTTAGTACAAAGTTGGGTCATC 57.388 34.615 0.00 0.00 0.00 2.92
190 191 6.435292 AGTTAGTACAAAGTTGGGTCATCT 57.565 37.500 0.00 0.00 0.00 2.90
191 192 7.549147 AGTTAGTACAAAGTTGGGTCATCTA 57.451 36.000 0.00 0.00 0.00 1.98
192 193 8.147244 AGTTAGTACAAAGTTGGGTCATCTAT 57.853 34.615 0.00 0.00 0.00 1.98
193 194 8.603304 AGTTAGTACAAAGTTGGGTCATCTATT 58.397 33.333 0.00 0.00 0.00 1.73
194 195 9.227777 GTTAGTACAAAGTTGGGTCATCTATTT 57.772 33.333 0.00 0.00 0.00 1.40
195 196 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
196 197 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
197 198 7.942341 AGTACAAAGTTGGGTCATCTATTTTGA 59.058 33.333 0.00 0.00 0.00 2.69
198 199 7.595819 ACAAAGTTGGGTCATCTATTTTGAA 57.404 32.000 0.00 0.00 0.00 2.69
199 200 8.017418 ACAAAGTTGGGTCATCTATTTTGAAA 57.983 30.769 0.00 0.00 0.00 2.69
200 201 8.650490 ACAAAGTTGGGTCATCTATTTTGAAAT 58.350 29.630 0.00 0.00 0.00 2.17
201 202 8.928733 CAAAGTTGGGTCATCTATTTTGAAATG 58.071 33.333 0.00 0.00 0.00 2.32
202 203 7.174107 AGTTGGGTCATCTATTTTGAAATGG 57.826 36.000 0.00 0.00 0.00 3.16
203 204 6.953520 AGTTGGGTCATCTATTTTGAAATGGA 59.046 34.615 5.21 5.21 39.67 3.41
204 205 7.123247 AGTTGGGTCATCTATTTTGAAATGGAG 59.877 37.037 8.22 2.49 38.91 3.86
205 206 5.893255 TGGGTCATCTATTTTGAAATGGAGG 59.107 40.000 7.79 7.79 38.91 4.30
206 207 5.302823 GGGTCATCTATTTTGAAATGGAGGG 59.697 44.000 12.38 6.38 38.91 4.30
207 208 6.129179 GGTCATCTATTTTGAAATGGAGGGA 58.871 40.000 12.38 8.08 38.91 4.20
208 209 6.264067 GGTCATCTATTTTGAAATGGAGGGAG 59.736 42.308 12.38 3.00 38.91 4.30
209 210 6.830838 GTCATCTATTTTGAAATGGAGGGAGT 59.169 38.462 12.38 0.00 38.91 3.85
210 211 7.993183 GTCATCTATTTTGAAATGGAGGGAGTA 59.007 37.037 12.38 0.00 38.91 2.59
211 212 8.213679 TCATCTATTTTGAAATGGAGGGAGTAG 58.786 37.037 12.38 0.00 38.91 2.57
241 242 2.170187 TGGCATGGAATTATTTGGCACC 59.830 45.455 0.00 0.00 39.39 5.01
251 252 5.603170 ATTATTTGGCACCAGAAGAATGG 57.397 39.130 0.00 0.00 46.47 3.16
272 294 4.758692 CAGCGTCACTGTTCTGGT 57.241 55.556 0.00 0.00 41.86 4.00
275 297 0.032678 AGCGTCACTGTTCTGGTCTG 59.967 55.000 0.00 0.00 0.00 3.51
277 299 0.673985 CGTCACTGTTCTGGTCTGGA 59.326 55.000 0.00 0.00 0.00 3.86
279 301 1.689273 GTCACTGTTCTGGTCTGGACT 59.311 52.381 0.67 0.00 0.00 3.85
280 302 2.891580 GTCACTGTTCTGGTCTGGACTA 59.108 50.000 0.67 0.00 0.00 2.59
282 304 3.764434 TCACTGTTCTGGTCTGGACTATC 59.236 47.826 0.67 0.00 0.00 2.08
312 334 7.643569 TGAGTAAATTCACCGGTACATACTA 57.356 36.000 6.87 0.00 0.00 1.82
315 337 8.474710 AGTAAATTCACCGGTACATACTATCT 57.525 34.615 6.87 0.00 0.00 1.98
319 341 4.395625 TCACCGGTACATACTATCTGAGG 58.604 47.826 6.87 0.00 0.00 3.86
320 342 3.057456 CACCGGTACATACTATCTGAGGC 60.057 52.174 6.87 0.00 0.00 4.70
321 343 3.154710 CCGGTACATACTATCTGAGGCA 58.845 50.000 0.00 0.00 0.00 4.75
322 344 3.057456 CCGGTACATACTATCTGAGGCAC 60.057 52.174 0.00 0.00 0.00 5.01
324 346 4.320567 CGGTACATACTATCTGAGGCACTG 60.321 50.000 0.00 0.00 41.55 3.66
325 347 3.742433 ACATACTATCTGAGGCACTGC 57.258 47.619 0.00 0.00 41.55 4.40
335 357 2.727544 GGCACTGCCTCGCAAAAA 59.272 55.556 13.28 0.00 46.69 1.94
365 387 2.008329 CTGAGCACTGAATCTTCCTGC 58.992 52.381 0.00 2.85 32.76 4.85
378 400 4.890158 TCTTCCTGCTGACTTGTATTCA 57.110 40.909 0.00 0.00 0.00 2.57
388 410 6.017440 TGCTGACTTGTATTCACTTTTACCAC 60.017 38.462 0.00 0.00 0.00 4.16
399 421 4.819630 TCACTTTTACCACGAAGCAATCTT 59.180 37.500 0.00 0.00 34.68 2.40
417 439 7.919313 CAATCTTGCTCGTTTGCATATATTT 57.081 32.000 0.00 0.00 42.96 1.40
419 441 8.474577 CAATCTTGCTCGTTTGCATATATTTTC 58.525 33.333 0.00 0.00 42.96 2.29
421 443 7.188834 TCTTGCTCGTTTGCATATATTTTCTG 58.811 34.615 0.00 0.00 42.96 3.02
422 444 6.676237 TGCTCGTTTGCATATATTTTCTGA 57.324 33.333 0.00 0.00 38.12 3.27
423 445 6.718388 TGCTCGTTTGCATATATTTTCTGAG 58.282 36.000 0.00 0.00 38.12 3.35
424 446 6.316140 TGCTCGTTTGCATATATTTTCTGAGT 59.684 34.615 0.00 0.00 38.12 3.41
425 447 7.148255 TGCTCGTTTGCATATATTTTCTGAGTT 60.148 33.333 0.00 0.00 38.12 3.01
426 448 7.164826 GCTCGTTTGCATATATTTTCTGAGTTG 59.835 37.037 0.00 0.00 0.00 3.16
427 449 8.039603 TCGTTTGCATATATTTTCTGAGTTGT 57.960 30.769 0.00 0.00 0.00 3.32
428 450 8.511321 TCGTTTGCATATATTTTCTGAGTTGTT 58.489 29.630 0.00 0.00 0.00 2.83
429 451 8.577939 CGTTTGCATATATTTTCTGAGTTGTTG 58.422 33.333 0.00 0.00 0.00 3.33
430 452 8.375465 GTTTGCATATATTTTCTGAGTTGTTGC 58.625 33.333 0.00 0.00 0.00 4.17
431 453 7.395190 TGCATATATTTTCTGAGTTGTTGCT 57.605 32.000 0.00 0.00 0.00 3.91
432 454 7.475015 TGCATATATTTTCTGAGTTGTTGCTC 58.525 34.615 0.00 0.00 36.12 4.26
433 455 6.630443 GCATATATTTTCTGAGTTGTTGCTCG 59.370 38.462 0.00 0.00 38.28 5.03
434 456 7.677276 GCATATATTTTCTGAGTTGTTGCTCGT 60.677 37.037 0.00 0.00 38.28 4.18
435 457 4.900635 ATTTTCTGAGTTGTTGCTCGTT 57.099 36.364 0.00 0.00 38.28 3.85
436 458 4.695217 TTTTCTGAGTTGTTGCTCGTTT 57.305 36.364 0.00 0.00 38.28 3.60
437 459 3.673746 TTCTGAGTTGTTGCTCGTTTG 57.326 42.857 0.00 0.00 38.28 2.93
438 460 1.330521 TCTGAGTTGTTGCTCGTTTGC 59.669 47.619 0.00 0.00 38.28 3.68
439 461 1.063912 CTGAGTTGTTGCTCGTTTGCA 59.936 47.619 0.00 0.00 41.65 4.08
440 462 1.675483 TGAGTTGTTGCTCGTTTGCAT 59.325 42.857 0.00 0.00 42.96 3.96
441 463 2.875317 TGAGTTGTTGCTCGTTTGCATA 59.125 40.909 0.00 0.00 42.96 3.14
442 464 3.501828 TGAGTTGTTGCTCGTTTGCATAT 59.498 39.130 0.00 0.00 42.96 1.78
443 465 4.693095 TGAGTTGTTGCTCGTTTGCATATA 59.307 37.500 0.00 0.00 42.96 0.86
444 466 5.353956 TGAGTTGTTGCTCGTTTGCATATAT 59.646 36.000 0.00 0.00 42.96 0.86
445 467 6.128035 TGAGTTGTTGCTCGTTTGCATATATT 60.128 34.615 0.00 0.00 42.96 1.28
446 468 6.620678 AGTTGTTGCTCGTTTGCATATATTT 58.379 32.000 0.00 0.00 42.96 1.40
447 469 7.090173 AGTTGTTGCTCGTTTGCATATATTTT 58.910 30.769 0.00 0.00 42.96 1.82
448 470 7.273381 AGTTGTTGCTCGTTTGCATATATTTTC 59.727 33.333 0.00 0.00 42.96 2.29
506 528 5.295787 TCATACTTCATACCAACGAAATGCC 59.704 40.000 0.00 0.00 0.00 4.40
507 529 3.686016 ACTTCATACCAACGAAATGCCT 58.314 40.909 0.00 0.00 0.00 4.75
517 539 1.138247 GAAATGCCTTGCCTCTGCG 59.862 57.895 0.00 0.00 41.78 5.18
579 601 6.168389 GGAAATTCAGCTGTCAAATCCAATT 58.832 36.000 14.67 6.76 0.00 2.32
580 602 7.322664 GGAAATTCAGCTGTCAAATCCAATTA 58.677 34.615 14.67 0.00 0.00 1.40
642 664 1.152963 GGACCACACACCAGCAACT 60.153 57.895 0.00 0.00 0.00 3.16
658 680 0.392060 AACTAATCCGACGGCAACCC 60.392 55.000 9.66 0.00 0.00 4.11
661 685 1.628238 TAATCCGACGGCAACCCCAT 61.628 55.000 9.66 0.00 0.00 4.00
671 695 2.369015 AACCCCATATCCCGCCCA 60.369 61.111 0.00 0.00 0.00 5.36
675 699 2.281761 CCATATCCCGCCCAGCAC 60.282 66.667 0.00 0.00 0.00 4.40
734 771 2.125326 CGCTCCCGGACCTGTGATA 61.125 63.158 0.73 0.00 0.00 2.15
746 784 2.719705 ACCTGTGATACCCTTCCCAAAA 59.280 45.455 0.00 0.00 0.00 2.44
749 787 2.225167 TGTGATACCCTTCCCAAAACCC 60.225 50.000 0.00 0.00 0.00 4.11
847 886 2.149578 CTGCCTTCTTCTCCAACACAG 58.850 52.381 0.00 0.00 0.00 3.66
924 963 1.269517 GCCACACAGAGAGATCGATCC 60.270 57.143 21.66 13.02 0.00 3.36
949 992 1.953559 CCTTAGCTTTAGCCATCGCA 58.046 50.000 0.00 0.00 43.38 5.10
971 1015 3.206246 ACAAACACCACCGCACCG 61.206 61.111 0.00 0.00 0.00 4.94
979 1023 4.025401 CACCGCACCGCCAAGAAC 62.025 66.667 0.00 0.00 0.00 3.01
980 1024 4.555709 ACCGCACCGCCAAGAACA 62.556 61.111 0.00 0.00 0.00 3.18
983 1027 2.616330 CGCACCGCCAAGAACACAT 61.616 57.895 0.00 0.00 0.00 3.21
1197 1241 1.831652 CGGACCCCTGCTTCAACTCT 61.832 60.000 0.00 0.00 0.00 3.24
1420 1468 3.289407 TCCATCCATCAATTAACGCCA 57.711 42.857 0.00 0.00 0.00 5.69
1421 1469 3.831323 TCCATCCATCAATTAACGCCAT 58.169 40.909 0.00 0.00 0.00 4.40
1425 1475 5.396484 CATCCATCAATTAACGCCATGATC 58.604 41.667 0.00 0.00 30.39 2.92
1426 1476 4.717877 TCCATCAATTAACGCCATGATCT 58.282 39.130 0.00 0.00 30.39 2.75
1431 1481 5.890334 TCAATTAACGCCATGATCTTTTCC 58.110 37.500 0.00 0.00 0.00 3.13
1432 1482 4.918810 ATTAACGCCATGATCTTTTCCC 57.081 40.909 0.00 0.00 0.00 3.97
1433 1483 2.214376 AACGCCATGATCTTTTCCCA 57.786 45.000 0.00 0.00 0.00 4.37
1434 1484 2.214376 ACGCCATGATCTTTTCCCAA 57.786 45.000 0.00 0.00 0.00 4.12
1435 1485 2.738743 ACGCCATGATCTTTTCCCAAT 58.261 42.857 0.00 0.00 0.00 3.16
1436 1486 2.689983 ACGCCATGATCTTTTCCCAATC 59.310 45.455 0.00 0.00 0.00 2.67
1437 1487 2.035066 CGCCATGATCTTTTCCCAATCC 59.965 50.000 0.00 0.00 0.00 3.01
1438 1488 2.366590 GCCATGATCTTTTCCCAATCCC 59.633 50.000 0.00 0.00 0.00 3.85
1439 1489 2.624838 CCATGATCTTTTCCCAATCCCG 59.375 50.000 0.00 0.00 0.00 5.14
1441 1491 1.638589 TGATCTTTTCCCAATCCCGGT 59.361 47.619 0.00 0.00 0.00 5.28
1448 1510 5.889289 TCTTTTCCCAATCCCGGTTAATTAG 59.111 40.000 0.00 0.00 0.00 1.73
1457 1519 1.937899 CCGGTTAATTAGCCTCCGTTG 59.062 52.381 15.45 0.15 39.62 4.10
1460 1522 3.247648 CGGTTAATTAGCCTCCGTTGATG 59.752 47.826 15.45 0.00 36.99 3.07
1472 1538 1.744522 CCGTTGATGATGTTCCATGCA 59.255 47.619 0.00 0.00 0.00 3.96
1474 1541 3.431856 CGTTGATGATGTTCCATGCAAG 58.568 45.455 0.00 0.00 0.00 4.01
1475 1542 3.732774 CGTTGATGATGTTCCATGCAAGG 60.733 47.826 0.19 0.19 0.00 3.61
1476 1543 3.090210 TGATGATGTTCCATGCAAGGT 57.910 42.857 8.03 0.00 0.00 3.50
1478 1545 4.795469 TGATGATGTTCCATGCAAGGTAT 58.205 39.130 8.03 1.58 0.00 2.73
1479 1546 4.823442 TGATGATGTTCCATGCAAGGTATC 59.177 41.667 8.03 10.83 0.00 2.24
1480 1547 3.554934 TGATGTTCCATGCAAGGTATCC 58.445 45.455 8.03 0.00 0.00 2.59
1481 1548 3.053768 TGATGTTCCATGCAAGGTATCCA 60.054 43.478 8.03 1.39 0.00 3.41
1482 1549 3.448093 TGTTCCATGCAAGGTATCCAA 57.552 42.857 8.03 0.00 0.00 3.53
1483 1550 3.355378 TGTTCCATGCAAGGTATCCAAG 58.645 45.455 8.03 0.00 0.00 3.61
1484 1551 3.010027 TGTTCCATGCAAGGTATCCAAGA 59.990 43.478 8.03 0.00 0.00 3.02
1495 1569 6.420903 GCAAGGTATCCAAGAAACAAAGAAAC 59.579 38.462 0.00 0.00 0.00 2.78
1544 1634 9.730420 ATTAACCGAAATTATTGCACAGTAATC 57.270 29.630 0.00 0.00 0.00 1.75
1547 1642 7.051623 ACCGAAATTATTGCACAGTAATCCTA 58.948 34.615 0.00 0.00 0.00 2.94
1595 1693 2.350895 CATGGGGGAGCGTGACAA 59.649 61.111 0.00 0.00 0.00 3.18
1604 1702 1.210545 GAGCGTGACAAAACGGACGA 61.211 55.000 0.00 0.00 43.75 4.20
1605 1703 0.599204 AGCGTGACAAAACGGACGAT 60.599 50.000 0.00 0.00 43.75 3.73
1642 1741 5.544650 CAGCAGGAATTTTTCATGGAAAGT 58.455 37.500 0.00 0.00 41.45 2.66
1643 1742 5.993441 CAGCAGGAATTTTTCATGGAAAGTT 59.007 36.000 6.91 6.91 41.45 2.66
1644 1743 6.484308 CAGCAGGAATTTTTCATGGAAAGTTT 59.516 34.615 8.48 3.08 41.45 2.66
1689 1824 3.936653 CGTGCAGATGACGTGTGT 58.063 55.556 0.00 0.00 32.06 3.72
1719 1864 1.222936 CCATCTGTCCTGTCCAGCC 59.777 63.158 0.00 0.00 0.00 4.85
1735 1880 2.489971 CAGCCGAACCTTTTCTGTACA 58.510 47.619 0.00 0.00 0.00 2.90
1829 1975 3.631453 TTGCTTCGATCCTGCAAGT 57.369 47.368 9.62 0.00 41.06 3.16
1830 1976 1.442769 TTGCTTCGATCCTGCAAGTC 58.557 50.000 9.62 0.00 41.06 3.01
1831 1977 0.391661 TGCTTCGATCCTGCAAGTCC 60.392 55.000 0.00 0.00 33.48 3.85
1832 1978 0.391661 GCTTCGATCCTGCAAGTCCA 60.392 55.000 0.00 0.00 0.00 4.02
1833 1979 1.745141 GCTTCGATCCTGCAAGTCCAT 60.745 52.381 0.00 0.00 0.00 3.41
1834 1980 2.636830 CTTCGATCCTGCAAGTCCATT 58.363 47.619 0.00 0.00 0.00 3.16
1835 1981 2.028420 TCGATCCTGCAAGTCCATTG 57.972 50.000 0.00 0.00 42.20 2.82
1895 2044 7.688478 TGTAATTTGTTCCGTATCGTATCTG 57.312 36.000 0.00 0.00 0.00 2.90
1904 2053 2.339694 CGTATCGTATCTGCATGCTTCG 59.660 50.000 20.33 15.03 0.00 3.79
1910 2059 1.986698 ATCTGCATGCTTCGTTTTGC 58.013 45.000 20.33 0.00 35.67 3.68
1961 2837 5.792741 CCTCAGAGTTTTCAGTCAAGATCT 58.207 41.667 0.00 0.00 0.00 2.75
1978 2860 7.987770 CAAGATCTTGCAGCTAGCTAGCCAT 62.988 48.000 36.28 20.42 44.32 4.40
1986 2868 3.212906 TAGCTAGCCATCAGCCGCG 62.213 63.158 12.13 0.00 45.47 6.46
2015 2900 2.752939 CCATCTTGTCGCATGCGCA 61.753 57.895 34.45 29.56 38.40 6.09
2026 2911 1.784115 CGCATGCGCAAAAGAAAATGC 60.784 47.619 29.09 16.56 38.40 3.56
2073 2978 2.037902 TCTTGTGGTCGGCACTATTTCA 59.962 45.455 0.00 0.00 0.00 2.69
2074 2979 2.779755 TGTGGTCGGCACTATTTCAT 57.220 45.000 0.00 0.00 0.00 2.57
2076 2981 3.527533 TGTGGTCGGCACTATTTCATAC 58.472 45.455 0.00 0.00 0.00 2.39
2172 3123 5.901853 TCTCTTGTCAGATCCATGAACCTAT 59.098 40.000 0.00 0.00 0.00 2.57
2190 3141 6.614694 ACCTATGATGGTTACTGTACACAA 57.385 37.500 0.00 0.00 36.89 3.33
2193 3144 3.655486 TGATGGTTACTGTACACAACCG 58.345 45.455 21.43 4.32 43.86 4.44
2194 3145 3.069872 TGATGGTTACTGTACACAACCGT 59.930 43.478 21.44 21.44 43.86 4.83
2278 3230 3.569210 CCCCCTGTGCACCACTCA 61.569 66.667 15.69 0.00 35.11 3.41
2285 3237 2.027024 TGCACCACTCACGTCGTC 59.973 61.111 0.00 0.00 0.00 4.20
2292 3244 3.733960 CTCACGTCGTCTGGGCGA 61.734 66.667 0.00 0.00 38.68 5.54
2404 3381 1.767289 GAATATGTCGTCGACGCCAT 58.233 50.000 33.02 33.02 41.09 4.40
2443 3421 1.665679 CTGGATCCGTTTCCGTGATTG 59.334 52.381 7.39 0.00 38.74 2.67
2449 3427 0.309302 CGTTTCCGTGATTGCCACAA 59.691 50.000 0.00 0.00 45.98 3.33
2477 3457 1.391485 CGTTTTGTCTGCAGATCTCGG 59.609 52.381 21.47 4.52 0.00 4.63
2486 3466 2.364842 AGATCTCGGGGCTGTGCT 60.365 61.111 0.00 0.00 0.00 4.40
2488 3497 0.687757 AGATCTCGGGGCTGTGCTAA 60.688 55.000 0.00 0.00 0.00 3.09
2490 3499 1.972660 ATCTCGGGGCTGTGCTAACC 61.973 60.000 0.00 0.00 0.00 2.85
2492 3501 1.305465 TCGGGGCTGTGCTAACCTA 60.305 57.895 0.00 0.00 0.00 3.08
2504 3513 4.875544 TGCTAACCTAATTTGCATCGAC 57.124 40.909 0.00 0.00 42.96 4.20
2535 3559 9.487790 AACCCAATTTTACTATTTGAATGTGTG 57.512 29.630 0.00 0.00 0.00 3.82
2568 3604 4.709397 TGGTTTCCAACTTGATCTGTTTGT 59.291 37.500 0.00 0.00 0.00 2.83
2619 3655 0.526211 CATCACGGAGGAGAACGTCA 59.474 55.000 0.00 0.00 42.04 4.35
2621 3657 0.536687 TCACGGAGGAGAACGTCAGT 60.537 55.000 0.00 0.00 42.04 3.41
2996 4032 2.421739 GCGGCCGTCATGGAGTAT 59.578 61.111 28.70 0.00 42.00 2.12
2999 4035 1.539496 GCGGCCGTCATGGAGTATAAA 60.539 52.381 28.70 0.00 42.00 1.40
3294 6020 2.623889 CCTCCGTAGTAGCACTGCTTAT 59.376 50.000 9.30 0.84 40.44 1.73
3439 6178 8.199449 ACAAAACTGACATTGTTCATCTTCAAT 58.801 29.630 0.00 0.00 36.39 2.57
3456 6198 3.338249 TCAATCTTTGGCTTCTTCCTCG 58.662 45.455 0.00 0.00 0.00 4.63
3465 6207 1.669211 GCTTCTTCCTCGCGTGTAACT 60.669 52.381 5.77 0.00 31.75 2.24
3476 6218 1.894756 GTGTAACTGCCGGCCAACA 60.895 57.895 26.77 19.17 0.00 3.33
3493 6235 3.687698 CCAACATAGGTTTAACCGACTGG 59.312 47.826 8.63 7.77 44.90 4.00
3602 6571 1.831736 ACAACTTCGTAGATCCCCTGG 59.168 52.381 0.00 0.00 35.04 4.45
3656 9907 4.401925 GCCATGGCTTCAACCTAAGATAT 58.598 43.478 29.98 0.00 38.26 1.63
3675 9926 5.823570 AGATATATTTCCGACGATCTCCGAT 59.176 40.000 0.00 0.00 41.76 4.18
3681 9932 0.385348 CGACGATCTCCGATGAGCTG 60.385 60.000 0.00 0.00 41.76 4.24
3682 9933 0.665835 GACGATCTCCGATGAGCTGT 59.334 55.000 0.00 0.00 41.76 4.40
3730 9982 6.016777 ACACATGAAGAAAATTCAGACACCTC 60.017 38.462 0.00 0.00 0.00 3.85
3811 10064 4.646945 TCAATTAAAACTTGGACTGCACCA 59.353 37.500 0.00 0.00 38.24 4.17
3815 10068 3.290948 AAACTTGGACTGCACCAACTA 57.709 42.857 4.72 0.00 43.79 2.24
3822 10075 3.134985 TGGACTGCACCAACTACTAAACA 59.865 43.478 0.00 0.00 36.96 2.83
3842 10095 9.769093 CTAAACATTCTATTTTTAGGGACGTTG 57.231 33.333 0.00 0.00 31.74 4.10
3843 10096 7.754851 AACATTCTATTTTTAGGGACGTTGT 57.245 32.000 0.00 0.00 0.00 3.32
3844 10097 7.754851 ACATTCTATTTTTAGGGACGTTGTT 57.245 32.000 0.00 0.00 0.00 2.83
3845 10098 7.590279 ACATTCTATTTTTAGGGACGTTGTTG 58.410 34.615 0.00 0.00 0.00 3.33
3929 10185 2.828520 CTCTTCTCCCTAGTGCACTTCA 59.171 50.000 27.06 6.95 0.00 3.02
3944 10200 1.751924 ACTTCACCCTCTAGTCGCATC 59.248 52.381 0.00 0.00 0.00 3.91
3945 10201 2.028130 CTTCACCCTCTAGTCGCATCT 58.972 52.381 0.00 0.00 0.00 2.90
3970 10227 4.335315 TGCATGTACTAGCATACAAAAGGC 59.665 41.667 8.42 1.87 38.53 4.35
3980 10237 3.243367 GCATACAAAAGGCGATGGCATAA 60.243 43.478 0.00 0.00 42.47 1.90
4020 10277 5.567138 AAAATTTTGAGGGACTATCGCAG 57.433 39.130 1.75 0.00 41.55 5.18
4027 10284 1.003118 AGGGACTATCGCAGTTTTGCA 59.997 47.619 0.14 0.00 45.05 4.08
4075 10332 9.732130 AGATTTGCTCTTACTTTTTGACTCTAT 57.268 29.630 0.00 0.00 0.00 1.98
4087 10344 8.914011 ACTTTTTGACTCTATTTAGTTTTGCCT 58.086 29.630 0.00 0.00 0.00 4.75
4112 10369 9.349713 CTTTAGATTTGTATAATAGGTTGCCCA 57.650 33.333 0.00 0.00 0.00 5.36
4123 10380 0.686789 GGTTGCCCAAATGCCTTCTT 59.313 50.000 0.00 0.00 0.00 2.52
4128 10385 1.620323 GCCCAAATGCCTTCTTTCACT 59.380 47.619 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.399038 GGTCATCTATTTTGGAATGGAGGGA 60.399 44.000 0.00 0.00 36.39 4.20
2 3 4.829492 GGGTCATCTATTTTGGAATGGAGG 59.171 45.833 0.00 0.00 36.39 4.30
3 4 5.448654 TGGGTCATCTATTTTGGAATGGAG 58.551 41.667 0.00 0.00 36.39 3.86
4 5 5.464588 TGGGTCATCTATTTTGGAATGGA 57.535 39.130 0.00 0.00 37.20 3.41
6 7 6.780457 AGTTGGGTCATCTATTTTGGAATG 57.220 37.500 0.00 0.00 0.00 2.67
7 8 7.235399 ACAAAGTTGGGTCATCTATTTTGGAAT 59.765 33.333 0.00 0.00 0.00 3.01
8 9 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
9 10 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
10 11 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
11 12 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
12 13 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
13 14 9.227777 GTTAGTACAAAGTTGGGTCATCTATTT 57.772 33.333 0.00 0.00 0.00 1.40
14 15 8.603304 AGTTAGTACAAAGTTGGGTCATCTATT 58.397 33.333 0.00 0.00 0.00 1.73
15 16 8.147244 AGTTAGTACAAAGTTGGGTCATCTAT 57.853 34.615 0.00 0.00 0.00 1.98
16 17 7.549147 AGTTAGTACAAAGTTGGGTCATCTA 57.451 36.000 0.00 0.00 0.00 1.98
17 18 6.435292 AGTTAGTACAAAGTTGGGTCATCT 57.565 37.500 0.00 0.00 0.00 2.90
18 19 8.611654 TTAAGTTAGTACAAAGTTGGGTCATC 57.388 34.615 0.00 0.00 0.00 2.92
20 21 9.492973 GTATTAAGTTAGTACAAAGTTGGGTCA 57.507 33.333 9.92 0.00 0.00 4.02
21 22 9.492973 TGTATTAAGTTAGTACAAAGTTGGGTC 57.507 33.333 14.01 0.00 29.46 4.46
160 161 9.492973 GACCCAACTTTGTACTAACTTAATACA 57.507 33.333 0.00 0.00 0.00 2.29
161 162 9.492973 TGACCCAACTTTGTACTAACTTAATAC 57.507 33.333 0.00 0.00 0.00 1.89
163 164 9.227777 GATGACCCAACTTTGTACTAACTTAAT 57.772 33.333 0.00 0.00 0.00 1.40
164 165 8.434392 AGATGACCCAACTTTGTACTAACTTAA 58.566 33.333 0.00 0.00 0.00 1.85
165 166 7.970102 AGATGACCCAACTTTGTACTAACTTA 58.030 34.615 0.00 0.00 0.00 2.24
166 167 6.838382 AGATGACCCAACTTTGTACTAACTT 58.162 36.000 0.00 0.00 0.00 2.66
167 168 6.435292 AGATGACCCAACTTTGTACTAACT 57.565 37.500 0.00 0.00 0.00 2.24
168 169 8.788325 AATAGATGACCCAACTTTGTACTAAC 57.212 34.615 0.00 0.00 0.00 2.34
169 170 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
170 171 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
171 172 7.942341 TCAAAATAGATGACCCAACTTTGTACT 59.058 33.333 0.00 0.00 0.00 2.73
172 173 8.106247 TCAAAATAGATGACCCAACTTTGTAC 57.894 34.615 0.00 0.00 0.00 2.90
173 174 8.698973 TTCAAAATAGATGACCCAACTTTGTA 57.301 30.769 0.00 0.00 0.00 2.41
174 175 7.595819 TTCAAAATAGATGACCCAACTTTGT 57.404 32.000 0.00 0.00 0.00 2.83
175 176 8.928733 CATTTCAAAATAGATGACCCAACTTTG 58.071 33.333 0.00 0.00 0.00 2.77
176 177 8.096414 CCATTTCAAAATAGATGACCCAACTTT 58.904 33.333 0.00 0.00 0.00 2.66
177 178 7.454380 TCCATTTCAAAATAGATGACCCAACTT 59.546 33.333 0.00 0.00 0.00 2.66
178 179 6.953520 TCCATTTCAAAATAGATGACCCAACT 59.046 34.615 0.00 0.00 0.00 3.16
179 180 7.169158 TCCATTTCAAAATAGATGACCCAAC 57.831 36.000 0.00 0.00 0.00 3.77
180 181 6.380846 CCTCCATTTCAAAATAGATGACCCAA 59.619 38.462 0.00 0.00 0.00 4.12
181 182 5.893255 CCTCCATTTCAAAATAGATGACCCA 59.107 40.000 0.00 0.00 0.00 4.51
182 183 5.302823 CCCTCCATTTCAAAATAGATGACCC 59.697 44.000 0.00 0.00 0.00 4.46
183 184 6.129179 TCCCTCCATTTCAAAATAGATGACC 58.871 40.000 0.00 0.00 0.00 4.02
184 185 6.830838 ACTCCCTCCATTTCAAAATAGATGAC 59.169 38.462 0.00 0.00 0.00 3.06
185 186 6.973642 ACTCCCTCCATTTCAAAATAGATGA 58.026 36.000 0.00 0.00 0.00 2.92
186 187 7.995488 ACTACTCCCTCCATTTCAAAATAGATG 59.005 37.037 0.00 0.00 0.00 2.90
187 188 8.107196 ACTACTCCCTCCATTTCAAAATAGAT 57.893 34.615 0.00 0.00 0.00 1.98
188 189 7.182026 TGACTACTCCCTCCATTTCAAAATAGA 59.818 37.037 0.00 0.00 0.00 1.98
189 190 7.338710 TGACTACTCCCTCCATTTCAAAATAG 58.661 38.462 0.00 0.00 0.00 1.73
190 191 7.265599 TGACTACTCCCTCCATTTCAAAATA 57.734 36.000 0.00 0.00 0.00 1.40
191 192 6.139679 TGACTACTCCCTCCATTTCAAAAT 57.860 37.500 0.00 0.00 0.00 1.82
192 193 5.576563 TGACTACTCCCTCCATTTCAAAA 57.423 39.130 0.00 0.00 0.00 2.44
193 194 5.779241 ATGACTACTCCCTCCATTTCAAA 57.221 39.130 0.00 0.00 0.00 2.69
194 195 5.779241 AATGACTACTCCCTCCATTTCAA 57.221 39.130 0.00 0.00 0.00 2.69
195 196 5.779241 AAATGACTACTCCCTCCATTTCA 57.221 39.130 0.00 0.00 33.67 2.69
196 197 5.946377 ACAAAATGACTACTCCCTCCATTTC 59.054 40.000 0.00 0.00 36.70 2.17
197 198 5.711976 CACAAAATGACTACTCCCTCCATTT 59.288 40.000 0.00 0.00 38.59 2.32
198 199 5.256474 CACAAAATGACTACTCCCTCCATT 58.744 41.667 0.00 0.00 0.00 3.16
199 200 4.324563 CCACAAAATGACTACTCCCTCCAT 60.325 45.833 0.00 0.00 0.00 3.41
200 201 3.009033 CCACAAAATGACTACTCCCTCCA 59.991 47.826 0.00 0.00 0.00 3.86
201 202 3.610911 CCACAAAATGACTACTCCCTCC 58.389 50.000 0.00 0.00 0.00 4.30
202 203 3.010420 GCCACAAAATGACTACTCCCTC 58.990 50.000 0.00 0.00 0.00 4.30
203 204 2.375174 TGCCACAAAATGACTACTCCCT 59.625 45.455 0.00 0.00 0.00 4.20
204 205 2.790433 TGCCACAAAATGACTACTCCC 58.210 47.619 0.00 0.00 0.00 4.30
205 206 3.129287 CCATGCCACAAAATGACTACTCC 59.871 47.826 0.00 0.00 0.00 3.85
206 207 4.009675 TCCATGCCACAAAATGACTACTC 58.990 43.478 0.00 0.00 0.00 2.59
207 208 4.032960 TCCATGCCACAAAATGACTACT 57.967 40.909 0.00 0.00 0.00 2.57
208 209 4.782019 TTCCATGCCACAAAATGACTAC 57.218 40.909 0.00 0.00 0.00 2.73
209 210 5.999205 AATTCCATGCCACAAAATGACTA 57.001 34.783 0.00 0.00 0.00 2.59
210 211 4.895668 AATTCCATGCCACAAAATGACT 57.104 36.364 0.00 0.00 0.00 3.41
211 212 7.414319 CCAAATAATTCCATGCCACAAAATGAC 60.414 37.037 0.00 0.00 0.00 3.06
241 242 1.016130 ACGCTGACGCCATTCTTCTG 61.016 55.000 0.00 0.00 45.53 3.02
272 294 7.825331 ATTTACTCAATCTCGATAGTCCAGA 57.175 36.000 0.00 0.00 37.40 3.86
275 297 7.382759 GGTGAATTTACTCAATCTCGATAGTCC 59.617 40.741 0.00 0.00 37.40 3.85
277 299 6.918569 CGGTGAATTTACTCAATCTCGATAGT 59.081 38.462 0.00 0.00 37.40 2.12
279 301 6.183360 ACCGGTGAATTTACTCAATCTCGATA 60.183 38.462 6.12 0.00 0.00 2.92
280 302 5.050490 CCGGTGAATTTACTCAATCTCGAT 58.950 41.667 0.00 0.00 0.00 3.59
282 304 4.181578 ACCGGTGAATTTACTCAATCTCG 58.818 43.478 6.12 0.00 0.00 4.04
339 361 4.279420 GGAAGATTCAGTGCTCAGGTTTTT 59.721 41.667 0.00 0.00 0.00 1.94
340 362 3.823304 GGAAGATTCAGTGCTCAGGTTTT 59.177 43.478 0.00 0.00 0.00 2.43
341 363 3.073650 AGGAAGATTCAGTGCTCAGGTTT 59.926 43.478 0.00 0.00 0.00 3.27
342 364 2.641815 AGGAAGATTCAGTGCTCAGGTT 59.358 45.455 0.00 0.00 0.00 3.50
343 365 2.027377 CAGGAAGATTCAGTGCTCAGGT 60.027 50.000 0.00 0.00 0.00 4.00
344 366 2.630158 CAGGAAGATTCAGTGCTCAGG 58.370 52.381 0.00 0.00 0.00 3.86
345 367 2.008329 GCAGGAAGATTCAGTGCTCAG 58.992 52.381 10.38 0.00 36.38 3.35
346 368 1.627329 AGCAGGAAGATTCAGTGCTCA 59.373 47.619 13.19 0.00 42.11 4.26
347 369 2.008329 CAGCAGGAAGATTCAGTGCTC 58.992 52.381 15.16 0.00 43.20 4.26
348 370 1.627329 TCAGCAGGAAGATTCAGTGCT 59.373 47.619 13.19 13.19 44.81 4.40
365 387 6.422701 TCGTGGTAAAAGTGAATACAAGTCAG 59.577 38.462 0.00 0.00 0.00 3.51
378 400 5.108385 CAAGATTGCTTCGTGGTAAAAGT 57.892 39.130 0.00 0.00 31.03 2.66
407 429 7.395190 AGCAACAACTCAGAAAATATATGCA 57.605 32.000 0.00 0.00 0.00 3.96
408 430 6.630443 CGAGCAACAACTCAGAAAATATATGC 59.370 38.462 0.00 0.00 36.42 3.14
409 431 7.688372 ACGAGCAACAACTCAGAAAATATATG 58.312 34.615 0.00 0.00 36.42 1.78
410 432 7.849804 ACGAGCAACAACTCAGAAAATATAT 57.150 32.000 0.00 0.00 36.42 0.86
411 433 7.667043 AACGAGCAACAACTCAGAAAATATA 57.333 32.000 0.00 0.00 36.42 0.86
412 434 6.560253 AACGAGCAACAACTCAGAAAATAT 57.440 33.333 0.00 0.00 36.42 1.28
413 435 6.198687 CAAACGAGCAACAACTCAGAAAATA 58.801 36.000 0.00 0.00 36.42 1.40
414 436 4.900635 AACGAGCAACAACTCAGAAAAT 57.099 36.364 0.00 0.00 36.42 1.82
417 439 2.223249 GCAAACGAGCAACAACTCAGAA 60.223 45.455 0.00 0.00 36.42 3.02
419 441 1.063912 TGCAAACGAGCAACAACTCAG 59.936 47.619 0.00 0.00 42.46 3.35
421 443 3.916061 TGCAAACGAGCAACAACTC 57.084 47.368 0.00 0.00 42.46 3.01
429 451 6.719365 ACTCAGAAAATATATGCAAACGAGC 58.281 36.000 0.00 0.00 0.00 5.03
430 452 8.177663 ACAACTCAGAAAATATATGCAAACGAG 58.822 33.333 0.00 0.00 0.00 4.18
431 453 8.039603 ACAACTCAGAAAATATATGCAAACGA 57.960 30.769 0.00 0.00 0.00 3.85
432 454 8.577939 CAACAACTCAGAAAATATATGCAAACG 58.422 33.333 0.00 0.00 0.00 3.60
433 455 8.375465 GCAACAACTCAGAAAATATATGCAAAC 58.625 33.333 0.00 0.00 0.00 2.93
434 456 8.306038 AGCAACAACTCAGAAAATATATGCAAA 58.694 29.630 0.00 0.00 0.00 3.68
435 457 7.829725 AGCAACAACTCAGAAAATATATGCAA 58.170 30.769 0.00 0.00 0.00 4.08
436 458 7.395190 AGCAACAACTCAGAAAATATATGCA 57.605 32.000 0.00 0.00 0.00 3.96
437 459 6.630443 CGAGCAACAACTCAGAAAATATATGC 59.370 38.462 0.00 0.00 36.42 3.14
438 460 7.688372 ACGAGCAACAACTCAGAAAATATATG 58.312 34.615 0.00 0.00 36.42 1.78
439 461 7.849804 ACGAGCAACAACTCAGAAAATATAT 57.150 32.000 0.00 0.00 36.42 0.86
440 462 7.667043 AACGAGCAACAACTCAGAAAATATA 57.333 32.000 0.00 0.00 36.42 0.86
441 463 6.560253 AACGAGCAACAACTCAGAAAATAT 57.440 33.333 0.00 0.00 36.42 1.28
442 464 6.371809 AAACGAGCAACAACTCAGAAAATA 57.628 33.333 0.00 0.00 36.42 1.40
443 465 4.900635 AACGAGCAACAACTCAGAAAAT 57.099 36.364 0.00 0.00 36.42 1.82
444 466 4.695217 AAACGAGCAACAACTCAGAAAA 57.305 36.364 0.00 0.00 36.42 2.29
445 467 4.083003 ACAAAACGAGCAACAACTCAGAAA 60.083 37.500 0.00 0.00 36.42 2.52
446 468 3.438781 ACAAAACGAGCAACAACTCAGAA 59.561 39.130 0.00 0.00 36.42 3.02
447 469 3.006940 ACAAAACGAGCAACAACTCAGA 58.993 40.909 0.00 0.00 36.42 3.27
448 470 3.181511 TGACAAAACGAGCAACAACTCAG 60.182 43.478 0.00 0.00 36.42 3.35
506 528 3.782244 GCACGACGCAGAGGCAAG 61.782 66.667 0.00 0.00 41.79 4.01
507 529 4.299547 AGCACGACGCAGAGGCAA 62.300 61.111 0.00 0.00 46.13 4.52
517 539 0.669318 TCCGGTTGATTCAGCACGAC 60.669 55.000 0.00 0.00 0.00 4.34
620 642 1.374252 GCTGGTGTGTGGTCCGTAG 60.374 63.158 0.00 0.00 0.00 3.51
625 647 1.961793 TTAGTTGCTGGTGTGTGGTC 58.038 50.000 0.00 0.00 0.00 4.02
626 648 2.504367 GATTAGTTGCTGGTGTGTGGT 58.496 47.619 0.00 0.00 0.00 4.16
642 664 1.628238 ATGGGGTTGCCGTCGGATTA 61.628 55.000 17.49 0.00 0.00 1.75
658 680 2.281761 GTGCTGGGCGGGATATGG 60.282 66.667 0.00 0.00 0.00 2.74
661 685 4.175337 GCAGTGCTGGGCGGGATA 62.175 66.667 8.18 0.00 0.00 2.59
671 695 1.188219 TTCTTCTCTCCGGCAGTGCT 61.188 55.000 16.11 0.00 0.00 4.40
675 699 3.677002 GGATTCTTCTCTCCGGCAG 57.323 57.895 0.00 0.00 0.00 4.85
716 752 2.125326 TATCACAGGTCCGGGAGCG 61.125 63.158 19.66 16.33 35.00 5.03
717 753 1.442148 GTATCACAGGTCCGGGAGC 59.558 63.158 18.33 18.33 0.00 4.70
734 771 2.203582 GCGGGTTTTGGGAAGGGT 60.204 61.111 0.00 0.00 0.00 4.34
847 886 3.058224 GGTTGTTGCTCTGTTGGTATGTC 60.058 47.826 0.00 0.00 0.00 3.06
949 992 0.536233 TGCGGTGGTGTTTGTGCTAT 60.536 50.000 0.00 0.00 0.00 2.97
971 1015 5.558273 GCGTATGTATGTATGTGTTCTTGGC 60.558 44.000 0.00 0.00 0.00 4.52
978 1022 2.792674 GCGTGCGTATGTATGTATGTGT 59.207 45.455 0.00 0.00 0.00 3.72
979 1023 2.792116 TGCGTGCGTATGTATGTATGTG 59.208 45.455 0.00 0.00 0.00 3.21
980 1024 3.086818 TGCGTGCGTATGTATGTATGT 57.913 42.857 0.00 0.00 0.00 2.29
983 1027 2.399448 CCATGCGTGCGTATGTATGTA 58.601 47.619 19.12 0.00 36.67 2.29
1281 1325 3.063084 GTGGAGACGCCCGAGACT 61.063 66.667 0.00 0.00 34.97 3.24
1420 1468 2.244769 ACCGGGATTGGGAAAAGATCAT 59.755 45.455 6.32 0.00 0.00 2.45
1421 1469 1.638589 ACCGGGATTGGGAAAAGATCA 59.361 47.619 6.32 0.00 0.00 2.92
1425 1475 5.451381 GCTAATTAACCGGGATTGGGAAAAG 60.451 44.000 6.32 0.00 0.00 2.27
1426 1476 4.403113 GCTAATTAACCGGGATTGGGAAAA 59.597 41.667 6.32 0.00 0.00 2.29
1431 1481 3.146847 GAGGCTAATTAACCGGGATTGG 58.853 50.000 6.32 6.44 0.00 3.16
1432 1482 3.146847 GGAGGCTAATTAACCGGGATTG 58.853 50.000 6.32 0.34 0.00 2.67
1433 1483 2.224450 CGGAGGCTAATTAACCGGGATT 60.224 50.000 6.32 5.79 39.92 3.01
1434 1484 1.346722 CGGAGGCTAATTAACCGGGAT 59.653 52.381 6.32 0.00 39.92 3.85
1435 1485 0.754472 CGGAGGCTAATTAACCGGGA 59.246 55.000 6.32 0.00 39.92 5.14
1436 1486 0.466963 ACGGAGGCTAATTAACCGGG 59.533 55.000 6.32 0.00 46.45 5.73
1437 1487 1.937899 CAACGGAGGCTAATTAACCGG 59.062 52.381 13.67 0.00 46.45 5.28
1439 1489 4.448210 TCATCAACGGAGGCTAATTAACC 58.552 43.478 0.00 0.00 0.00 2.85
1441 1491 5.680619 ACATCATCAACGGAGGCTAATTAA 58.319 37.500 0.00 0.00 0.00 1.40
1448 1510 1.017387 GGAACATCATCAACGGAGGC 58.983 55.000 0.00 0.00 0.00 4.70
1472 1538 7.559897 TCAGTTTCTTTGTTTCTTGGATACCTT 59.440 33.333 0.00 0.00 0.00 3.50
1474 1541 7.139392 GTCAGTTTCTTTGTTTCTTGGATACC 58.861 38.462 0.00 0.00 0.00 2.73
1475 1542 6.851330 CGTCAGTTTCTTTGTTTCTTGGATAC 59.149 38.462 0.00 0.00 0.00 2.24
1476 1543 6.540914 ACGTCAGTTTCTTTGTTTCTTGGATA 59.459 34.615 0.00 0.00 0.00 2.59
1478 1545 4.698304 ACGTCAGTTTCTTTGTTTCTTGGA 59.302 37.500 0.00 0.00 0.00 3.53
1479 1546 4.981794 ACGTCAGTTTCTTTGTTTCTTGG 58.018 39.130 0.00 0.00 0.00 3.61
1480 1547 8.363029 GTTTTACGTCAGTTTCTTTGTTTCTTG 58.637 33.333 0.00 0.00 0.00 3.02
1481 1548 8.077386 TGTTTTACGTCAGTTTCTTTGTTTCTT 58.923 29.630 0.00 0.00 0.00 2.52
1482 1549 7.586747 TGTTTTACGTCAGTTTCTTTGTTTCT 58.413 30.769 0.00 0.00 0.00 2.52
1483 1550 7.784790 TGTTTTACGTCAGTTTCTTTGTTTC 57.215 32.000 0.00 0.00 0.00 2.78
1484 1551 7.201401 GCATGTTTTACGTCAGTTTCTTTGTTT 60.201 33.333 0.00 0.00 0.00 2.83
1495 1569 6.647212 TTAGATGAGCATGTTTTACGTCAG 57.353 37.500 0.00 0.00 0.00 3.51
1547 1642 7.201350 GCGCACGAGATTCTTTTGATTAAAAAT 60.201 33.333 0.30 0.00 37.14 1.82
1552 1647 3.063452 GGCGCACGAGATTCTTTTGATTA 59.937 43.478 10.83 0.00 0.00 1.75
1561 1656 3.567797 GCCAGGCGCACGAGATTC 61.568 66.667 10.83 0.00 37.47 2.52
1583 1681 1.595929 TCCGTTTTGTCACGCTCCC 60.596 57.895 0.00 0.00 38.93 4.30
1595 1693 2.166870 TGCCATACTACATCGTCCGTTT 59.833 45.455 0.00 0.00 0.00 3.60
1604 1702 2.501261 CTGCTGCATGCCATACTACAT 58.499 47.619 16.68 0.00 42.00 2.29
1605 1703 1.475571 CCTGCTGCATGCCATACTACA 60.476 52.381 16.68 1.92 42.00 2.74
1643 1742 2.022718 CACCCCAATTTCCAAGGGAA 57.977 50.000 0.00 0.00 45.80 3.97
1644 1743 0.544120 GCACCCCAATTTCCAAGGGA 60.544 55.000 0.00 0.00 45.80 4.20
1676 1811 1.862123 GCACCACACACGTCATCTG 59.138 57.895 0.00 0.00 0.00 2.90
1735 1880 3.181459 TGTGTTGGTGCTGTGTACACTAT 60.181 43.478 25.60 0.00 39.73 2.12
1829 1975 6.713762 CCAAAATATCTTGGTAGCAATGGA 57.286 37.500 13.46 7.11 40.94 3.41
1839 1985 6.238759 GCCTAAGCTACACCAAAATATCTTGG 60.239 42.308 6.25 6.25 43.04 3.61
1840 1986 6.729187 GCCTAAGCTACACCAAAATATCTTG 58.271 40.000 0.00 0.00 35.50 3.02
1841 1987 6.944234 GCCTAAGCTACACCAAAATATCTT 57.056 37.500 0.00 0.00 35.50 2.40
1867 2014 6.833342 ACGATACGGAACAAATTACATACC 57.167 37.500 0.00 0.00 0.00 2.73
1870 2017 7.095774 GCAGATACGATACGGAACAAATTACAT 60.096 37.037 0.00 0.00 0.00 2.29
1926 2076 7.394016 TGAAAACTCTGAGGCATGTATCTAAA 58.606 34.615 9.85 0.00 0.00 1.85
1936 2086 3.134623 TCTTGACTGAAAACTCTGAGGCA 59.865 43.478 9.85 1.17 0.00 4.75
1941 2816 5.237996 TGCAAGATCTTGACTGAAAACTCTG 59.762 40.000 34.43 8.15 42.93 3.35
1994 2878 0.041576 CGCATGCGACAAGATGGATG 60.042 55.000 35.82 0.00 42.83 3.51
2100 3005 8.966069 AAAAATTGTTCCCCGATCTTTAAAAA 57.034 26.923 0.00 0.00 0.00 1.94
2131 3037 8.524487 TGACAAGAGACTCCTTCTATTTACTTC 58.476 37.037 0.00 0.00 33.25 3.01
2139 3045 5.197451 GGATCTGACAAGAGACTCCTTCTA 58.803 45.833 0.00 0.00 35.37 2.10
2172 3123 3.069872 ACGGTTGTGTACAGTAACCATCA 59.930 43.478 28.19 8.19 43.08 3.07
2190 3141 0.178912 AGAAACAGGGGTCCTACGGT 60.179 55.000 0.00 0.00 29.64 4.83
2193 3144 3.619242 GCAAGTAGAAACAGGGGTCCTAC 60.619 52.174 0.00 0.00 29.64 3.18
2194 3145 2.570302 GCAAGTAGAAACAGGGGTCCTA 59.430 50.000 0.00 0.00 29.64 2.94
2197 3148 2.561478 TGCAAGTAGAAACAGGGGTC 57.439 50.000 0.00 0.00 0.00 4.46
2295 3247 4.980805 TTGCGTCCCGTGGCTGTC 62.981 66.667 0.00 0.00 0.00 3.51
2296 3248 4.329545 ATTGCGTCCCGTGGCTGT 62.330 61.111 0.00 0.00 0.00 4.40
2404 3381 3.368013 CCAGTTGCTGTAACTCGATGGTA 60.368 47.826 8.23 0.00 46.55 3.25
2443 3421 2.403259 CAAAACGAGGGATTTTGTGGC 58.597 47.619 0.00 0.00 40.57 5.01
2449 3427 2.554032 CTGCAGACAAAACGAGGGATTT 59.446 45.455 8.42 0.00 0.00 2.17
2464 3444 2.042537 AGCCCCGAGATCTGCAGA 60.043 61.111 20.79 20.79 0.00 4.26
2477 3457 2.159240 GCAAATTAGGTTAGCACAGCCC 60.159 50.000 0.00 0.00 0.00 5.19
2486 3466 7.148373 GGTTAACTGTCGATGCAAATTAGGTTA 60.148 37.037 5.42 0.00 0.00 2.85
2488 3497 5.123344 GGTTAACTGTCGATGCAAATTAGGT 59.877 40.000 5.42 0.00 0.00 3.08
2490 3499 5.123186 TGGGTTAACTGTCGATGCAAATTAG 59.877 40.000 5.42 0.00 0.00 1.73
2492 3501 3.823873 TGGGTTAACTGTCGATGCAAATT 59.176 39.130 5.42 0.00 0.00 1.82
2568 3604 1.975680 GTCCACAACCTCAAGACCCTA 59.024 52.381 0.00 0.00 0.00 3.53
2619 3655 0.250234 TTGGCGAGCTTGAGCATACT 59.750 50.000 4.70 0.00 45.16 2.12
2621 3657 0.462581 CCTTGGCGAGCTTGAGCATA 60.463 55.000 4.70 0.00 45.16 3.14
3294 6020 3.452990 TCCGGTAGCTCATGGTTATGAAA 59.547 43.478 0.00 0.00 42.48 2.69
3439 6178 0.670546 CGCGAGGAAGAAGCCAAAGA 60.671 55.000 0.00 0.00 0.00 2.52
3465 6207 0.328592 TAAACCTATGTTGGCCGGCA 59.671 50.000 30.85 12.04 34.13 5.69
3476 6218 2.169978 GGAGCCAGTCGGTTAAACCTAT 59.830 50.000 0.00 0.00 35.66 2.57
3512 6254 3.743017 TCATGGGGAGGGCAAGGC 61.743 66.667 0.00 0.00 0.00 4.35
3516 6258 0.846427 AAGAAGTCATGGGGAGGGCA 60.846 55.000 0.00 0.00 0.00 5.36
3517 6259 0.106967 GAAGAAGTCATGGGGAGGGC 60.107 60.000 0.00 0.00 0.00 5.19
3527 6494 1.488705 ATGGCGGTGGGAAGAAGTCA 61.489 55.000 0.00 0.00 0.00 3.41
3602 6571 1.456919 ATTATTAGGGGCTGGGGGTC 58.543 55.000 0.00 0.00 0.00 4.46
3610 6579 7.665974 GGCCACATTATCTATATTATTAGGGGC 59.334 40.741 0.00 0.00 0.00 5.80
3656 9907 3.143728 TCATCGGAGATCGTCGGAAATA 58.856 45.455 10.03 0.00 45.12 1.40
3702 9953 7.591426 GGTGTCTGAATTTTCTTCATGTGTTAC 59.409 37.037 0.00 0.00 0.00 2.50
3714 9965 7.094634 TGCTATTTCTGAGGTGTCTGAATTTTC 60.095 37.037 0.00 0.00 39.56 2.29
3815 10068 9.511272 AACGTCCCTAAAAATAGAATGTTTAGT 57.489 29.630 8.19 0.00 34.44 2.24
3822 10075 7.360607 CGACAACAACGTCCCTAAAAATAGAAT 60.361 37.037 0.00 0.00 31.91 2.40
3929 10185 1.107114 CACAGATGCGACTAGAGGGT 58.893 55.000 0.00 0.00 0.00 4.34
3944 10200 6.421377 TTTTGTATGCTAGTACATGCACAG 57.579 37.500 13.63 0.00 41.49 3.66
3945 10201 5.353956 CCTTTTGTATGCTAGTACATGCACA 59.646 40.000 13.63 7.02 41.49 4.57
3961 10217 3.876914 CTCTTATGCCATCGCCTTTTGTA 59.123 43.478 0.00 0.00 0.00 2.41
3970 10227 4.384056 AGGAACAATCTCTTATGCCATCG 58.616 43.478 0.00 0.00 0.00 3.84
4013 10270 5.641636 TCTCATTAAGTGCAAAACTGCGATA 59.358 36.000 0.00 0.00 39.81 2.92
4020 10277 6.379386 GGTAGGTTCTCATTAAGTGCAAAAC 58.621 40.000 0.00 0.00 0.00 2.43
4027 10284 5.964477 TCTCATGGGTAGGTTCTCATTAAGT 59.036 40.000 0.00 0.00 0.00 2.24
4112 10369 3.003689 CGACACAGTGAAAGAAGGCATTT 59.996 43.478 7.81 0.00 0.00 2.32
4123 10380 0.456628 TGACCGAACGACACAGTGAA 59.543 50.000 7.81 0.00 0.00 3.18
4128 10385 1.155424 GCCTTTGACCGAACGACACA 61.155 55.000 0.00 0.00 0.00 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.