Multiple sequence alignment - TraesCS2D01G511900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G511900 chr2D 100.000 4468 0 0 1 4468 603403961 603399494 0.000000e+00 8251.0
1 TraesCS2D01G511900 chr2D 90.878 866 58 11 2615 3476 603542545 603543393 0.000000e+00 1142.0
2 TraesCS2D01G511900 chr2D 93.561 761 48 1 2815 3575 603501300 603500541 0.000000e+00 1133.0
3 TraesCS2D01G511900 chr2D 90.281 782 43 19 826 1588 603381222 603380455 0.000000e+00 992.0
4 TraesCS2D01G511900 chr2D 89.290 775 51 20 829 1582 603540937 603541700 0.000000e+00 942.0
5 TraesCS2D01G511900 chr2D 87.767 703 63 10 3787 4468 603500546 603499846 0.000000e+00 800.0
6 TraesCS2D01G511900 chr2D 85.759 323 27 9 1 312 603540344 603540658 1.550000e-84 324.0
7 TraesCS2D01G511900 chr2D 84.472 322 36 7 1 321 603381772 603381464 5.610000e-79 305.0
8 TraesCS2D01G511900 chr2D 78.626 262 31 17 2343 2597 603379840 603379597 2.780000e-32 150.0
9 TraesCS2D01G511900 chr2D 97.368 76 1 1 1581 1656 603380393 603380319 1.300000e-25 128.0
10 TraesCS2D01G511900 chr2D 98.148 54 1 0 3512 3565 603543402 603543455 1.320000e-15 95.3
11 TraesCS2D01G511900 chr2D 95.918 49 1 1 867 914 641183343 641183391 1.330000e-10 78.7
12 TraesCS2D01G511900 chr2D 95.238 42 2 0 701 742 603381338 603381297 2.880000e-07 67.6
13 TraesCS2D01G511900 chr2B 88.146 1510 109 32 2056 3531 733972197 733970724 0.000000e+00 1733.0
14 TraesCS2D01G511900 chr2B 87.967 964 92 12 2615 3575 733890934 733889992 0.000000e+00 1116.0
15 TraesCS2D01G511900 chr2B 85.332 1084 114 26 2506 3575 734049557 734048505 0.000000e+00 1079.0
16 TraesCS2D01G511900 chr2B 87.331 963 85 23 2615 3567 733859895 733858960 0.000000e+00 1068.0
17 TraesCS2D01G511900 chr2B 87.631 857 68 22 754 1588 733973510 733972670 0.000000e+00 961.0
18 TraesCS2D01G511900 chr2B 84.771 939 57 36 793 1688 733892433 733891538 0.000000e+00 863.0
19 TraesCS2D01G511900 chr2B 87.273 770 61 18 829 1588 733863019 733862277 0.000000e+00 845.0
20 TraesCS2D01G511900 chr2B 86.319 307 28 5 325 620 99087998 99087695 5.580000e-84 322.0
21 TraesCS2D01G511900 chr2B 87.984 258 30 1 322 579 65959464 65959720 2.020000e-78 303.0
22 TraesCS2D01G511900 chr2B 81.143 350 37 17 1581 1928 733862232 733861910 2.060000e-63 254.0
23 TraesCS2D01G511900 chr2B 83.193 238 26 5 1 236 733863425 733863200 5.860000e-49 206.0
24 TraesCS2D01G511900 chr2B 89.937 159 12 2 3816 3971 733889982 733889825 7.580000e-48 202.0
25 TraesCS2D01G511900 chr2B 77.835 388 45 25 2190 2565 733891303 733890945 7.580000e-48 202.0
26 TraesCS2D01G511900 chr2B 89.542 153 16 0 1 153 733892848 733892696 1.270000e-45 195.0
27 TraesCS2D01G511900 chr2B 88.889 153 11 4 87 234 733973810 733973659 2.740000e-42 183.0
28 TraesCS2D01G511900 chr2B 74.378 402 39 24 2188 2538 733861814 733861426 3.650000e-21 113.0
29 TraesCS2D01G511900 chr2B 97.959 49 1 0 3523 3571 733969266 733969218 7.960000e-13 86.1
30 TraesCS2D01G511900 chr2B 100.000 34 0 0 289 322 733973660 733973627 3.730000e-06 63.9
31 TraesCS2D01G511900 chr2B 97.297 37 0 1 2530 2565 733859942 733859906 1.340000e-05 62.1
32 TraesCS2D01G511900 chr2A 83.123 1582 131 63 2049 3567 735601778 735600270 0.000000e+00 1317.0
33 TraesCS2D01G511900 chr2A 85.039 1163 103 36 2432 3571 735702110 735700996 0.000000e+00 1118.0
34 TraesCS2D01G511900 chr2A 89.667 900 51 17 2606 3476 735762877 735763763 0.000000e+00 1109.0
35 TraesCS2D01G511900 chr2A 86.940 804 64 21 805 1588 735603084 735602302 0.000000e+00 865.0
36 TraesCS2D01G511900 chr2A 87.583 749 51 26 866 1582 735761298 735762036 0.000000e+00 830.0
37 TraesCS2D01G511900 chr2A 93.088 434 30 0 973 1406 766445593 766446026 1.750000e-178 636.0
38 TraesCS2D01G511900 chr2A 94.074 405 24 0 1001 1405 735703428 735703024 2.280000e-172 616.0
39 TraesCS2D01G511900 chr2A 89.914 347 19 3 4138 4468 735697145 735696799 2.470000e-117 433.0
40 TraesCS2D01G511900 chr2A 86.544 379 19 14 1586 1952 735602268 735601910 5.420000e-104 388.0
41 TraesCS2D01G511900 chr2A 84.314 306 28 9 18 312 735760685 735760981 9.460000e-72 281.0
42 TraesCS2D01G511900 chr2A 92.982 171 12 0 3796 3966 735700989 735700819 2.670000e-62 250.0
43 TraesCS2D01G511900 chr2A 88.208 212 20 2 5 211 735603722 735603511 9.600000e-62 248.0
44 TraesCS2D01G511900 chr2A 81.250 144 13 9 476 607 78551140 78551281 2.200000e-18 104.0
45 TraesCS2D01G511900 chr2A 90.541 74 6 1 2493 2565 735762802 735762875 3.680000e-16 97.1
46 TraesCS2D01G511900 chr2A 98.148 54 1 0 3512 3565 735763772 735763825 1.320000e-15 95.3
47 TraesCS2D01G511900 chr5D 95.890 219 9 0 3571 3789 7044199 7044417 5.500000e-94 355.0
48 TraesCS2D01G511900 chr5D 95.067 223 10 1 3571 3792 164651736 164651514 2.560000e-92 350.0
49 TraesCS2D01G511900 chr5D 85.294 306 31 9 322 616 468044307 468044609 2.020000e-78 303.0
50 TraesCS2D01G511900 chr3D 95.434 219 10 0 3571 3789 186623103 186623321 2.560000e-92 350.0
51 TraesCS2D01G511900 chr7D 94.619 223 12 0 3570 3792 265001188 265001410 3.310000e-91 346.0
52 TraesCS2D01G511900 chr7D 94.170 223 13 0 3570 3792 227049057 227048835 1.540000e-89 340.0
53 TraesCS2D01G511900 chr3B 94.643 224 11 1 3571 3793 166832209 166832432 3.310000e-91 346.0
54 TraesCS2D01G511900 chr3B 94.222 225 13 0 3567 3791 456109556 456109780 1.190000e-90 344.0
55 TraesCS2D01G511900 chr3B 89.922 258 21 5 320 574 13413560 13413305 1.200000e-85 327.0
56 TraesCS2D01G511900 chr5A 94.545 220 12 0 3570 3789 680118002 680118221 1.540000e-89 340.0
57 TraesCS2D01G511900 chr4A 94.170 223 13 0 3570 3792 738399522 738399300 1.540000e-89 340.0
58 TraesCS2D01G511900 chr4A 97.500 40 1 0 577 616 420552561 420552600 8.020000e-08 69.4
59 TraesCS2D01G511900 chr1A 90.588 255 23 1 325 579 405351134 405350881 1.990000e-88 337.0
60 TraesCS2D01G511900 chr7B 86.774 310 27 6 324 620 486324035 486324343 2.580000e-87 333.0
61 TraesCS2D01G511900 chr4B 85.993 307 29 6 325 620 609194219 609194522 2.590000e-82 316.0
62 TraesCS2D01G511900 chr4B 88.462 260 28 2 320 579 193544347 193544090 3.360000e-81 313.0
63 TraesCS2D01G511900 chr6B 85.761 309 30 7 325 620 257331590 257331283 9.330000e-82 315.0
64 TraesCS2D01G511900 chr1B 80.420 143 16 5 476 607 296792683 296792824 1.020000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G511900 chr2D 603399494 603403961 4467 True 8251.000000 8251 100.00000 1 4468 1 chr2D.!!$R1 4467
1 TraesCS2D01G511900 chr2D 603499846 603501300 1454 True 966.500000 1133 90.66400 2815 4468 2 chr2D.!!$R3 1653
2 TraesCS2D01G511900 chr2D 603540344 603543455 3111 False 625.825000 1142 91.01875 1 3565 4 chr2D.!!$F2 3564
3 TraesCS2D01G511900 chr2D 603379597 603381772 2175 True 328.520000 992 89.19700 1 2597 5 chr2D.!!$R2 2596
4 TraesCS2D01G511900 chr2B 734048505 734049557 1052 True 1079.000000 1079 85.33200 2506 3575 1 chr2B.!!$R2 1069
5 TraesCS2D01G511900 chr2B 733969218 733973810 4592 True 605.400000 1733 92.52500 87 3571 5 chr2B.!!$R5 3484
6 TraesCS2D01G511900 chr2B 733889825 733892848 3023 True 515.600000 1116 86.01040 1 3971 5 chr2B.!!$R4 3970
7 TraesCS2D01G511900 chr2B 733858960 733863425 4465 True 424.683333 1068 85.10250 1 3567 6 chr2B.!!$R3 3566
8 TraesCS2D01G511900 chr2A 735600270 735603722 3452 True 704.500000 1317 86.20375 5 3567 4 chr2A.!!$R1 3562
9 TraesCS2D01G511900 chr2A 735696799 735703428 6629 True 604.250000 1118 90.50225 1001 4468 4 chr2A.!!$R2 3467
10 TraesCS2D01G511900 chr2A 735760685 735763825 3140 False 482.480000 1109 90.05060 18 3565 5 chr2A.!!$F3 3547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
613 638 0.106519 ACCCATGCATTGGTAGAGGC 60.107 55.0 20.45 0.0 44.83 4.70 F
2150 3073 0.178068 AATAAGCATGGGACTCGCGT 59.822 50.0 5.77 0.0 0.00 6.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2491 3577 0.321298 TTGGCGTTAGGAACAGAGGC 60.321 55.0 0.00 0.00 0.0 4.70 R
3741 7837 0.175760 TACGCGTACTCCTAGGTCGT 59.824 55.0 16.41 9.96 0.0 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 8.961092 CAATTTTAACATTCTTGTCAGTGTCAG 58.039 33.333 0.00 0.00 34.06 3.51
81 85 2.988010 TCTTGTCAGTGTCAGTGCTT 57.012 45.000 2.50 0.00 0.00 3.91
143 158 3.306641 GGCTGATAAATCGATCTGAGGCT 60.307 47.826 0.00 0.00 0.00 4.58
187 205 9.612620 CTTGTATTCACTTTTACCATGAAGTTC 57.387 33.333 0.00 0.00 35.89 3.01
197 215 2.005451 CCATGAAGTTCTCTTGCTCGG 58.995 52.381 4.17 0.00 33.64 4.63
272 297 7.170320 AGGTAATTGACTTGTACAGTACAAACG 59.830 37.037 23.46 16.43 46.90 3.60
284 309 2.096614 AGTACAAACGAACGAAATGCCG 60.097 45.455 0.14 0.00 0.00 5.69
319 344 1.974236 TGAATCCAACCGGGCAAAAAT 59.026 42.857 6.32 0.00 36.21 1.82
320 345 2.370189 TGAATCCAACCGGGCAAAAATT 59.630 40.909 6.32 0.00 36.21 1.82
321 346 3.578716 TGAATCCAACCGGGCAAAAATTA 59.421 39.130 6.32 0.00 36.21 1.40
322 347 3.885724 ATCCAACCGGGCAAAAATTAG 57.114 42.857 6.32 0.00 36.21 1.73
323 348 2.877866 TCCAACCGGGCAAAAATTAGA 58.122 42.857 6.32 0.00 36.21 2.10
324 349 2.559231 TCCAACCGGGCAAAAATTAGAC 59.441 45.455 6.32 0.00 36.21 2.59
325 350 2.353307 CCAACCGGGCAAAAATTAGACC 60.353 50.000 6.32 0.00 0.00 3.85
326 351 1.552578 ACCGGGCAAAAATTAGACCC 58.447 50.000 6.32 0.00 37.19 4.46
327 352 1.076513 ACCGGGCAAAAATTAGACCCT 59.923 47.619 6.32 0.00 38.50 4.34
328 353 2.176045 CCGGGCAAAAATTAGACCCTT 58.824 47.619 0.00 0.00 38.50 3.95
329 354 2.165641 CCGGGCAAAAATTAGACCCTTC 59.834 50.000 0.00 0.00 38.50 3.46
330 355 2.165641 CGGGCAAAAATTAGACCCTTCC 59.834 50.000 0.00 0.00 38.50 3.46
331 356 2.500098 GGGCAAAAATTAGACCCTTCCC 59.500 50.000 0.00 0.00 37.59 3.97
332 357 3.169908 GGCAAAAATTAGACCCTTCCCA 58.830 45.455 0.00 0.00 0.00 4.37
333 358 3.195610 GGCAAAAATTAGACCCTTCCCAG 59.804 47.826 0.00 0.00 0.00 4.45
334 359 3.832490 GCAAAAATTAGACCCTTCCCAGT 59.168 43.478 0.00 0.00 0.00 4.00
335 360 4.321974 GCAAAAATTAGACCCTTCCCAGTG 60.322 45.833 0.00 0.00 0.00 3.66
336 361 2.808906 AATTAGACCCTTCCCAGTGC 57.191 50.000 0.00 0.00 0.00 4.40
337 362 1.972588 ATTAGACCCTTCCCAGTGCT 58.027 50.000 0.00 0.00 0.00 4.40
338 363 1.742308 TTAGACCCTTCCCAGTGCTT 58.258 50.000 0.00 0.00 0.00 3.91
339 364 1.276622 TAGACCCTTCCCAGTGCTTC 58.723 55.000 0.00 0.00 0.00 3.86
340 365 0.768221 AGACCCTTCCCAGTGCTTCA 60.768 55.000 0.00 0.00 0.00 3.02
341 366 0.110486 GACCCTTCCCAGTGCTTCAA 59.890 55.000 0.00 0.00 0.00 2.69
342 367 0.111253 ACCCTTCCCAGTGCTTCAAG 59.889 55.000 0.00 0.00 0.00 3.02
343 368 0.610232 CCCTTCCCAGTGCTTCAAGG 60.610 60.000 0.00 0.00 34.47 3.61
344 369 0.111253 CCTTCCCAGTGCTTCAAGGT 59.889 55.000 0.00 0.00 30.69 3.50
345 370 1.242076 CTTCCCAGTGCTTCAAGGTG 58.758 55.000 0.00 0.00 0.00 4.00
346 371 0.550914 TTCCCAGTGCTTCAAGGTGT 59.449 50.000 0.00 0.00 0.00 4.16
347 372 1.429930 TCCCAGTGCTTCAAGGTGTA 58.570 50.000 0.00 0.00 0.00 2.90
348 373 1.071699 TCCCAGTGCTTCAAGGTGTAC 59.928 52.381 0.00 0.00 0.00 2.90
349 374 1.202758 CCCAGTGCTTCAAGGTGTACA 60.203 52.381 0.00 0.00 0.00 2.90
350 375 2.146342 CCAGTGCTTCAAGGTGTACAG 58.854 52.381 0.00 0.00 0.00 2.74
351 376 2.146342 CAGTGCTTCAAGGTGTACAGG 58.854 52.381 0.00 0.00 0.00 4.00
352 377 1.768870 AGTGCTTCAAGGTGTACAGGT 59.231 47.619 0.00 0.00 0.00 4.00
353 378 1.873591 GTGCTTCAAGGTGTACAGGTG 59.126 52.381 0.00 0.00 0.00 4.00
354 379 0.875059 GCTTCAAGGTGTACAGGTGC 59.125 55.000 0.00 0.00 0.00 5.01
355 380 1.543429 GCTTCAAGGTGTACAGGTGCT 60.543 52.381 0.00 0.00 0.00 4.40
356 381 2.289444 GCTTCAAGGTGTACAGGTGCTA 60.289 50.000 0.00 0.00 0.00 3.49
357 382 3.805807 GCTTCAAGGTGTACAGGTGCTAA 60.806 47.826 0.00 0.00 0.00 3.09
358 383 3.678056 TCAAGGTGTACAGGTGCTAAG 57.322 47.619 0.00 0.00 0.00 2.18
359 384 2.301870 TCAAGGTGTACAGGTGCTAAGG 59.698 50.000 0.00 0.00 0.00 2.69
360 385 2.301870 CAAGGTGTACAGGTGCTAAGGA 59.698 50.000 0.00 0.00 0.00 3.36
361 386 2.834113 AGGTGTACAGGTGCTAAGGAT 58.166 47.619 0.00 0.00 0.00 3.24
362 387 2.501723 AGGTGTACAGGTGCTAAGGATG 59.498 50.000 0.00 0.00 0.00 3.51
363 388 2.280628 GTGTACAGGTGCTAAGGATGC 58.719 52.381 0.00 0.00 0.00 3.91
364 389 1.209504 TGTACAGGTGCTAAGGATGCC 59.790 52.381 0.00 0.00 0.00 4.40
365 390 1.209504 GTACAGGTGCTAAGGATGCCA 59.790 52.381 0.00 0.00 0.00 4.92
366 391 0.921896 ACAGGTGCTAAGGATGCCAT 59.078 50.000 0.00 0.00 0.00 4.40
367 392 2.126882 ACAGGTGCTAAGGATGCCATA 58.873 47.619 0.00 0.00 0.00 2.74
368 393 2.713167 ACAGGTGCTAAGGATGCCATAT 59.287 45.455 0.00 0.00 0.00 1.78
369 394 3.909995 ACAGGTGCTAAGGATGCCATATA 59.090 43.478 0.00 0.00 0.00 0.86
370 395 4.019860 ACAGGTGCTAAGGATGCCATATAG 60.020 45.833 0.00 0.00 0.00 1.31
371 396 4.223700 CAGGTGCTAAGGATGCCATATAGA 59.776 45.833 0.00 0.00 0.00 1.98
372 397 4.223923 AGGTGCTAAGGATGCCATATAGAC 59.776 45.833 0.00 0.00 0.00 2.59
373 398 4.020218 GGTGCTAAGGATGCCATATAGACA 60.020 45.833 0.00 0.00 0.00 3.41
374 399 5.513094 GGTGCTAAGGATGCCATATAGACAA 60.513 44.000 0.00 0.00 0.00 3.18
375 400 5.997746 GTGCTAAGGATGCCATATAGACAAA 59.002 40.000 0.00 0.00 0.00 2.83
376 401 6.486657 GTGCTAAGGATGCCATATAGACAAAA 59.513 38.462 0.00 0.00 0.00 2.44
377 402 7.013274 GTGCTAAGGATGCCATATAGACAAAAA 59.987 37.037 0.00 0.00 0.00 1.94
402 427 9.669887 AAAATGATATGGCAAAGCAATTAAAGA 57.330 25.926 0.00 0.00 0.00 2.52
403 428 8.882415 AATGATATGGCAAAGCAATTAAAGAG 57.118 30.769 0.00 0.00 0.00 2.85
404 429 6.808829 TGATATGGCAAAGCAATTAAAGAGG 58.191 36.000 0.00 0.00 0.00 3.69
405 430 6.606796 TGATATGGCAAAGCAATTAAAGAGGA 59.393 34.615 0.00 0.00 0.00 3.71
406 431 4.789012 TGGCAAAGCAATTAAAGAGGAG 57.211 40.909 0.00 0.00 0.00 3.69
407 432 4.406456 TGGCAAAGCAATTAAAGAGGAGA 58.594 39.130 0.00 0.00 0.00 3.71
408 433 4.460382 TGGCAAAGCAATTAAAGAGGAGAG 59.540 41.667 0.00 0.00 0.00 3.20
409 434 4.702131 GGCAAAGCAATTAAAGAGGAGAGA 59.298 41.667 0.00 0.00 0.00 3.10
410 435 5.163673 GGCAAAGCAATTAAAGAGGAGAGAG 60.164 44.000 0.00 0.00 0.00 3.20
411 436 5.645497 GCAAAGCAATTAAAGAGGAGAGAGA 59.355 40.000 0.00 0.00 0.00 3.10
412 437 6.183360 GCAAAGCAATTAAAGAGGAGAGAGAG 60.183 42.308 0.00 0.00 0.00 3.20
413 438 6.619329 AAGCAATTAAAGAGGAGAGAGAGT 57.381 37.500 0.00 0.00 0.00 3.24
414 439 7.726033 AAGCAATTAAAGAGGAGAGAGAGTA 57.274 36.000 0.00 0.00 0.00 2.59
415 440 7.912778 AGCAATTAAAGAGGAGAGAGAGTAT 57.087 36.000 0.00 0.00 0.00 2.12
416 441 8.317776 AGCAATTAAAGAGGAGAGAGAGTATT 57.682 34.615 0.00 0.00 0.00 1.89
417 442 9.427821 AGCAATTAAAGAGGAGAGAGAGTATTA 57.572 33.333 0.00 0.00 0.00 0.98
426 451 9.401496 AGAGGAGAGAGAGTATTATAGTAACCT 57.599 37.037 0.00 0.00 0.00 3.50
442 467 6.723131 AGTAACCTTAGAAAGAAACGATGC 57.277 37.500 0.00 0.00 0.00 3.91
443 468 6.465084 AGTAACCTTAGAAAGAAACGATGCT 58.535 36.000 0.00 0.00 0.00 3.79
444 469 7.609056 AGTAACCTTAGAAAGAAACGATGCTA 58.391 34.615 0.00 0.00 0.00 3.49
445 470 8.092687 AGTAACCTTAGAAAGAAACGATGCTAA 58.907 33.333 0.00 0.00 0.00 3.09
446 471 6.969828 ACCTTAGAAAGAAACGATGCTAAG 57.030 37.500 0.00 0.00 36.31 2.18
447 472 5.351740 ACCTTAGAAAGAAACGATGCTAAGC 59.648 40.000 0.00 0.00 35.62 3.09
448 473 5.351465 CCTTAGAAAGAAACGATGCTAAGCA 59.649 40.000 0.00 0.00 44.86 3.91
449 474 4.670227 AGAAAGAAACGATGCTAAGCAC 57.330 40.909 0.00 0.00 43.04 4.40
450 475 4.065088 AGAAAGAAACGATGCTAAGCACA 58.935 39.130 0.00 0.00 43.04 4.57
451 476 3.813529 AAGAAACGATGCTAAGCACAC 57.186 42.857 0.00 0.00 43.04 3.82
452 477 2.766313 AGAAACGATGCTAAGCACACA 58.234 42.857 0.00 0.00 43.04 3.72
453 478 3.138304 AGAAACGATGCTAAGCACACAA 58.862 40.909 0.00 0.00 43.04 3.33
454 479 3.563808 AGAAACGATGCTAAGCACACAAA 59.436 39.130 0.00 0.00 43.04 2.83
455 480 2.969443 ACGATGCTAAGCACACAAAC 57.031 45.000 0.00 0.00 43.04 2.93
456 481 1.535462 ACGATGCTAAGCACACAAACC 59.465 47.619 0.00 0.00 43.04 3.27
457 482 1.806542 CGATGCTAAGCACACAAACCT 59.193 47.619 0.00 0.00 43.04 3.50
458 483 3.000041 CGATGCTAAGCACACAAACCTA 59.000 45.455 0.00 0.00 43.04 3.08
459 484 3.623060 CGATGCTAAGCACACAAACCTAT 59.377 43.478 0.00 0.00 43.04 2.57
460 485 4.494690 CGATGCTAAGCACACAAACCTATG 60.495 45.833 0.00 0.00 43.04 2.23
461 486 3.750371 TGCTAAGCACACAAACCTATGT 58.250 40.909 0.00 0.00 31.71 2.29
475 500 8.918202 ACAAACCTATGTGAAAAGACTATCAA 57.082 30.769 0.00 0.00 30.82 2.57
476 501 8.784043 ACAAACCTATGTGAAAAGACTATCAAC 58.216 33.333 0.00 0.00 30.82 3.18
477 502 7.923414 AACCTATGTGAAAAGACTATCAACC 57.077 36.000 0.00 0.00 0.00 3.77
478 503 7.016153 ACCTATGTGAAAAGACTATCAACCA 57.984 36.000 0.00 0.00 0.00 3.67
479 504 7.458397 ACCTATGTGAAAAGACTATCAACCAA 58.542 34.615 0.00 0.00 0.00 3.67
480 505 8.109634 ACCTATGTGAAAAGACTATCAACCAAT 58.890 33.333 0.00 0.00 0.00 3.16
481 506 9.613428 CCTATGTGAAAAGACTATCAACCAATA 57.387 33.333 0.00 0.00 0.00 1.90
483 508 8.862325 ATGTGAAAAGACTATCAACCAATACA 57.138 30.769 0.00 0.00 0.00 2.29
484 509 8.862325 TGTGAAAAGACTATCAACCAATACAT 57.138 30.769 0.00 0.00 0.00 2.29
485 510 8.729756 TGTGAAAAGACTATCAACCAATACATG 58.270 33.333 0.00 0.00 0.00 3.21
486 511 8.946085 GTGAAAAGACTATCAACCAATACATGA 58.054 33.333 0.00 0.00 0.00 3.07
487 512 9.166173 TGAAAAGACTATCAACCAATACATGAG 57.834 33.333 0.00 0.00 0.00 2.90
488 513 8.511604 AAAAGACTATCAACCAATACATGAGG 57.488 34.615 0.00 0.00 0.00 3.86
489 514 6.179906 AGACTATCAACCAATACATGAGGG 57.820 41.667 0.00 0.00 0.00 4.30
490 515 5.905331 AGACTATCAACCAATACATGAGGGA 59.095 40.000 0.00 0.00 0.00 4.20
491 516 5.930135 ACTATCAACCAATACATGAGGGAC 58.070 41.667 0.00 0.00 0.00 4.46
493 518 4.927267 TCAACCAATACATGAGGGACTT 57.073 40.909 0.00 0.00 41.55 3.01
494 519 5.255397 TCAACCAATACATGAGGGACTTT 57.745 39.130 0.00 0.00 41.55 2.66
495 520 6.381498 TCAACCAATACATGAGGGACTTTA 57.619 37.500 0.00 0.00 41.55 1.85
496 521 6.785076 TCAACCAATACATGAGGGACTTTAA 58.215 36.000 0.00 0.00 41.55 1.52
497 522 7.410174 TCAACCAATACATGAGGGACTTTAAT 58.590 34.615 0.00 0.00 41.55 1.40
498 523 7.893302 TCAACCAATACATGAGGGACTTTAATT 59.107 33.333 0.00 0.00 41.55 1.40
499 524 7.645058 ACCAATACATGAGGGACTTTAATTG 57.355 36.000 0.00 0.00 41.55 2.32
500 525 7.182060 ACCAATACATGAGGGACTTTAATTGT 58.818 34.615 0.00 0.00 41.55 2.71
501 526 7.673926 ACCAATACATGAGGGACTTTAATTGTT 59.326 33.333 0.00 0.00 41.55 2.83
502 527 9.184523 CCAATACATGAGGGACTTTAATTGTTA 57.815 33.333 0.00 0.00 41.55 2.41
506 531 8.472007 ACATGAGGGACTTTAATTGTTAAACA 57.528 30.769 0.00 0.00 41.55 2.83
507 532 8.919145 ACATGAGGGACTTTAATTGTTAAACAA 58.081 29.630 0.00 0.00 41.55 2.83
508 533 9.927668 CATGAGGGACTTTAATTGTTAAACAAT 57.072 29.630 0.00 0.00 45.79 2.71
523 548 8.801715 TGTTAAACAATTTCAATGAGAGAAGC 57.198 30.769 0.00 0.00 0.00 3.86
524 549 8.632679 TGTTAAACAATTTCAATGAGAGAAGCT 58.367 29.630 0.00 0.00 0.00 3.74
525 550 9.468532 GTTAAACAATTTCAATGAGAGAAGCTT 57.531 29.630 0.00 0.00 0.00 3.74
528 553 6.850555 ACAATTTCAATGAGAGAAGCTTAGC 58.149 36.000 0.00 0.00 0.00 3.09
529 554 6.658391 ACAATTTCAATGAGAGAAGCTTAGCT 59.342 34.615 0.00 0.00 42.56 3.32
530 555 7.826252 ACAATTTCAATGAGAGAAGCTTAGCTA 59.174 33.333 7.32 0.00 38.25 3.32
531 556 7.784633 ATTTCAATGAGAGAAGCTTAGCTAC 57.215 36.000 7.32 2.50 38.25 3.58
532 557 5.269505 TCAATGAGAGAAGCTTAGCTACC 57.730 43.478 7.32 2.59 38.25 3.18
533 558 4.711846 TCAATGAGAGAAGCTTAGCTACCA 59.288 41.667 7.32 1.94 38.25 3.25
534 559 5.187772 TCAATGAGAGAAGCTTAGCTACCAA 59.812 40.000 7.32 0.00 38.25 3.67
535 560 5.683876 ATGAGAGAAGCTTAGCTACCAAA 57.316 39.130 7.32 0.00 38.25 3.28
536 561 5.078411 TGAGAGAAGCTTAGCTACCAAAG 57.922 43.478 7.32 0.00 38.25 2.77
564 589 5.980698 CACCTATGCATTGTGAAGACTAG 57.019 43.478 19.08 1.71 31.66 2.57
565 590 5.423015 CACCTATGCATTGTGAAGACTAGT 58.577 41.667 19.08 0.00 31.66 2.57
566 591 5.877012 CACCTATGCATTGTGAAGACTAGTT 59.123 40.000 19.08 0.00 31.66 2.24
567 592 5.877012 ACCTATGCATTGTGAAGACTAGTTG 59.123 40.000 3.54 0.00 0.00 3.16
568 593 4.691860 ATGCATTGTGAAGACTAGTTGC 57.308 40.909 0.00 0.42 0.00 4.17
569 594 3.743521 TGCATTGTGAAGACTAGTTGCT 58.256 40.909 11.89 0.00 0.00 3.91
570 595 4.893608 TGCATTGTGAAGACTAGTTGCTA 58.106 39.130 11.89 0.00 0.00 3.49
571 596 5.304778 TGCATTGTGAAGACTAGTTGCTAA 58.695 37.500 11.89 0.00 0.00 3.09
572 597 5.409520 TGCATTGTGAAGACTAGTTGCTAAG 59.590 40.000 11.89 0.00 0.00 2.18
573 598 5.639506 GCATTGTGAAGACTAGTTGCTAAGA 59.360 40.000 0.00 0.00 0.00 2.10
574 599 6.314896 GCATTGTGAAGACTAGTTGCTAAGAT 59.685 38.462 0.00 0.00 0.00 2.40
575 600 7.148340 GCATTGTGAAGACTAGTTGCTAAGATT 60.148 37.037 0.00 0.00 0.00 2.40
576 601 8.725148 CATTGTGAAGACTAGTTGCTAAGATTT 58.275 33.333 0.00 0.00 0.00 2.17
577 602 8.677148 TTGTGAAGACTAGTTGCTAAGATTTT 57.323 30.769 0.00 0.00 0.00 1.82
578 603 9.772973 TTGTGAAGACTAGTTGCTAAGATTTTA 57.227 29.630 0.00 0.00 0.00 1.52
579 604 9.424319 TGTGAAGACTAGTTGCTAAGATTTTAG 57.576 33.333 0.00 0.00 39.44 1.85
594 619 9.547753 CTAAGATTTTAGCACCTTATCTAAGCA 57.452 33.333 0.00 0.00 30.63 3.91
595 620 7.793927 AGATTTTAGCACCTTATCTAAGCAC 57.206 36.000 0.00 0.00 32.02 4.40
596 621 6.768381 AGATTTTAGCACCTTATCTAAGCACC 59.232 38.462 0.00 0.00 32.02 5.01
597 622 4.417426 TTAGCACCTTATCTAAGCACCC 57.583 45.455 0.00 0.00 32.02 4.61
598 623 2.196595 AGCACCTTATCTAAGCACCCA 58.803 47.619 0.00 0.00 32.02 4.51
599 624 2.780010 AGCACCTTATCTAAGCACCCAT 59.220 45.455 0.00 0.00 32.02 4.00
600 625 2.880890 GCACCTTATCTAAGCACCCATG 59.119 50.000 0.00 0.00 32.02 3.66
612 637 1.683943 CACCCATGCATTGGTAGAGG 58.316 55.000 21.27 6.39 44.83 3.69
613 638 0.106519 ACCCATGCATTGGTAGAGGC 60.107 55.000 20.45 0.00 44.83 4.70
614 639 0.825010 CCCATGCATTGGTAGAGGCC 60.825 60.000 8.68 0.00 44.83 5.19
618 643 3.144506 CATGCATTGGTAGAGGCCTTAG 58.855 50.000 6.77 0.00 0.00 2.18
667 692 7.805071 CGAATCCATTTATTTACTGCTTCCATC 59.195 37.037 0.00 0.00 0.00 3.51
669 694 6.430864 TCCATTTATTTACTGCTTCCATCCA 58.569 36.000 0.00 0.00 0.00 3.41
671 696 7.068593 TCCATTTATTTACTGCTTCCATCCAAG 59.931 37.037 0.00 0.00 0.00 3.61
677 702 2.830370 CTTCCATCCAAGCGGGGC 60.830 66.667 0.00 0.00 37.22 5.80
684 709 2.898920 ATCCAAGCGGGGCACTCATG 62.899 60.000 0.00 0.00 37.22 3.07
689 904 1.153086 GCGGGGCACTCATGAATCT 60.153 57.895 0.00 0.00 0.00 2.40
697 912 1.134580 CACTCATGAATCTCGCCCTGT 60.135 52.381 0.00 0.00 0.00 4.00
699 914 2.363680 ACTCATGAATCTCGCCCTGTAG 59.636 50.000 0.00 0.00 0.00 2.74
853 1233 2.829725 CGCTCCCCCTATAAATACCCCT 60.830 54.545 0.00 0.00 0.00 4.79
932 1313 2.656646 CAGAGCACCACGTAGCCA 59.343 61.111 0.00 0.00 0.00 4.75
933 1314 1.738099 CAGAGCACCACGTAGCCAC 60.738 63.158 0.00 0.00 0.00 5.01
939 1324 2.184322 CCACGTAGCCACAGCGAT 59.816 61.111 0.00 0.00 46.67 4.58
941 1334 0.870307 CCACGTAGCCACAGCGATAC 60.870 60.000 0.00 0.00 46.67 2.24
947 1340 1.407936 AGCCACAGCGATACAGAGAT 58.592 50.000 0.00 0.00 46.67 2.75
948 1341 1.339610 AGCCACAGCGATACAGAGATC 59.660 52.381 0.00 0.00 46.67 2.75
960 1353 2.422597 ACAGAGATCGATCCTAGAGCG 58.577 52.381 21.66 8.67 43.08 5.03
970 1371 2.482333 CCTAGAGCGAGACACCCCG 61.482 68.421 0.00 0.00 0.00 5.73
988 1411 1.027255 CGAACAACACCACACCACCA 61.027 55.000 0.00 0.00 0.00 4.17
989 1412 0.738389 GAACAACACCACACCACCAG 59.262 55.000 0.00 0.00 0.00 4.00
997 1420 1.900016 CACACCACCAGCAGCACAT 60.900 57.895 0.00 0.00 0.00 3.21
1692 2463 4.164221 AGACACGGATCTTCATTTGGGTAT 59.836 41.667 0.00 0.00 0.00 2.73
1693 2464 5.365605 AGACACGGATCTTCATTTGGGTATA 59.634 40.000 0.00 0.00 0.00 1.47
1694 2465 5.996644 ACACGGATCTTCATTTGGGTATAA 58.003 37.500 0.00 0.00 0.00 0.98
1698 2469 7.013274 CACGGATCTTCATTTGGGTATAAACAT 59.987 37.037 0.00 0.00 0.00 2.71
1699 2470 7.013274 ACGGATCTTCATTTGGGTATAAACATG 59.987 37.037 0.00 0.00 0.00 3.21
1700 2471 7.147976 GGATCTTCATTTGGGTATAAACATGC 58.852 38.462 0.00 0.00 0.00 4.06
1702 2473 5.954752 TCTTCATTTGGGTATAAACATGCCA 59.045 36.000 0.00 0.00 0.00 4.92
1703 2474 6.610830 TCTTCATTTGGGTATAAACATGCCAT 59.389 34.615 0.00 0.00 0.00 4.40
1704 2475 7.782168 TCTTCATTTGGGTATAAACATGCCATA 59.218 33.333 0.00 0.00 0.00 2.74
1705 2476 8.489676 TTCATTTGGGTATAAACATGCCATAT 57.510 30.769 0.00 0.00 0.00 1.78
1706 2477 9.593565 TTCATTTGGGTATAAACATGCCATATA 57.406 29.630 0.00 0.00 0.00 0.86
1863 2690 1.270518 CCCTGCTCGTTGGAGATATGG 60.271 57.143 0.00 0.00 43.27 2.74
1866 2693 1.837439 TGCTCGTTGGAGATATGGGTT 59.163 47.619 0.00 0.00 43.27 4.11
1878 2719 6.385759 TGGAGATATGGGTTTACTAGAAGCAA 59.614 38.462 0.00 0.00 0.00 3.91
1884 2728 9.969001 ATATGGGTTTACTAGAAGCAAAAGTTA 57.031 29.630 0.00 0.00 0.00 2.24
1918 2762 2.981875 CTGAAAGCAACACCAACGTAC 58.018 47.619 0.00 0.00 0.00 3.67
1953 2806 2.093711 TGCTATTGGTAGTCATGTGCGT 60.094 45.455 0.00 0.00 0.00 5.24
1956 2809 2.248280 TTGGTAGTCATGTGCGTGTT 57.752 45.000 0.00 0.00 0.00 3.32
1960 2813 1.459592 GTAGTCATGTGCGTGTTGTCC 59.540 52.381 0.00 0.00 0.00 4.02
1961 2814 1.204062 GTCATGTGCGTGTTGTCCG 59.796 57.895 0.00 0.00 0.00 4.79
1996 2849 3.028850 ACAGCAGCCGATTAGTAGGTAA 58.971 45.455 0.00 0.00 0.00 2.85
1998 2851 4.101119 ACAGCAGCCGATTAGTAGGTAATT 59.899 41.667 0.00 0.00 30.93 1.40
1999 2852 5.057149 CAGCAGCCGATTAGTAGGTAATTT 58.943 41.667 0.00 0.00 30.93 1.82
2003 2856 6.292919 GCAGCCGATTAGTAGGTAATTTCTTG 60.293 42.308 0.00 0.00 30.93 3.02
2006 2859 8.480501 AGCCGATTAGTAGGTAATTTCTTGTTA 58.519 33.333 0.00 0.00 30.93 2.41
2011 2903 9.969001 ATTAGTAGGTAATTTCTTGTTAAGCCA 57.031 29.630 0.00 0.00 0.00 4.75
2022 2914 5.049167 TCTTGTTAAGCCAAGTGCAAAATG 58.951 37.500 5.90 0.00 44.83 2.32
2023 2915 4.662468 TGTTAAGCCAAGTGCAAAATGA 57.338 36.364 0.00 0.00 44.83 2.57
2025 2917 5.423015 TGTTAAGCCAAGTGCAAAATGAAA 58.577 33.333 0.00 0.00 44.83 2.69
2027 2919 4.880886 AAGCCAAGTGCAAAATGAAAAC 57.119 36.364 0.00 0.00 44.83 2.43
2028 2920 4.141233 AGCCAAGTGCAAAATGAAAACT 57.859 36.364 0.00 0.00 44.83 2.66
2031 2923 5.754890 AGCCAAGTGCAAAATGAAAACTTAG 59.245 36.000 0.00 0.00 44.83 2.18
2033 2925 6.699642 GCCAAGTGCAAAATGAAAACTTAGTA 59.300 34.615 0.00 0.00 40.77 1.82
2034 2926 7.223777 GCCAAGTGCAAAATGAAAACTTAGTAA 59.776 33.333 0.00 0.00 40.77 2.24
2035 2927 8.755018 CCAAGTGCAAAATGAAAACTTAGTAAG 58.245 33.333 8.41 8.41 30.20 2.34
2036 2928 9.301153 CAAGTGCAAAATGAAAACTTAGTAAGT 57.699 29.630 9.85 9.85 45.46 2.24
2038 2930 9.946165 AGTGCAAAATGAAAACTTAGTAAGTAC 57.054 29.630 15.84 10.83 41.91 2.73
2041 2933 9.724839 GCAAAATGAAAACTTAGTAAGTACACA 57.275 29.630 15.84 14.73 41.91 3.72
2045 2937 9.490379 AATGAAAACTTAGTAAGTACACAGAGG 57.510 33.333 15.84 0.00 41.91 3.69
2046 2938 8.015185 TGAAAACTTAGTAAGTACACAGAGGT 57.985 34.615 15.84 0.00 41.91 3.85
2047 2939 7.924412 TGAAAACTTAGTAAGTACACAGAGGTG 59.076 37.037 15.84 0.00 45.42 4.00
2133 3056 7.840931 AGAAAACAGGTGAAAAGTGAAGAAAT 58.159 30.769 0.00 0.00 0.00 2.17
2136 3059 9.586435 AAAACAGGTGAAAAGTGAAGAAATAAG 57.414 29.630 0.00 0.00 0.00 1.73
2143 3066 6.493115 TGAAAAGTGAAGAAATAAGCATGGGA 59.507 34.615 0.00 0.00 0.00 4.37
2148 3071 2.565841 AGAAATAAGCATGGGACTCGC 58.434 47.619 0.00 0.00 0.00 5.03
2150 3073 0.178068 AATAAGCATGGGACTCGCGT 59.822 50.000 5.77 0.00 0.00 6.01
2233 3226 4.773323 ACTTAAATTTGTCCTCTGCTGC 57.227 40.909 0.00 0.00 0.00 5.25
2238 3231 5.382618 AAATTTGTCCTCTGCTGCTAAAG 57.617 39.130 0.00 0.00 0.00 1.85
2241 3234 2.771089 TGTCCTCTGCTGCTAAAGTTG 58.229 47.619 0.00 0.00 0.00 3.16
2255 3248 7.413109 GCTGCTAAAGTTGTACTAAGCCTTAAG 60.413 40.741 0.00 0.00 36.85 1.85
2264 3257 8.715998 GTTGTACTAAGCCTTAAGGTTTTCTAC 58.284 37.037 26.16 22.46 39.42 2.59
2265 3258 8.198807 TGTACTAAGCCTTAAGGTTTTCTACT 57.801 34.615 26.16 9.08 39.42 2.57
2266 3259 9.312904 TGTACTAAGCCTTAAGGTTTTCTACTA 57.687 33.333 26.16 8.58 39.42 1.82
2275 3268 9.372369 CCTTAAGGTTTTCTACTAGTCAAGATG 57.628 37.037 13.83 0.00 0.00 2.90
2280 3273 5.738619 TTTCTACTAGTCAAGATGGTGCA 57.261 39.130 0.00 0.00 0.00 4.57
2281 3274 4.720649 TCTACTAGTCAAGATGGTGCAC 57.279 45.455 8.80 8.80 0.00 4.57
2282 3275 2.770164 ACTAGTCAAGATGGTGCACC 57.230 50.000 29.67 29.67 0.00 5.01
2283 3276 2.260822 ACTAGTCAAGATGGTGCACCT 58.739 47.619 34.75 21.08 36.82 4.00
2284 3277 3.441101 ACTAGTCAAGATGGTGCACCTA 58.559 45.455 34.75 21.96 36.82 3.08
2285 3278 3.449018 ACTAGTCAAGATGGTGCACCTAG 59.551 47.826 34.75 25.38 36.82 3.02
2290 3283 1.123928 AGATGGTGCACCTAGCTACC 58.876 55.000 34.75 15.83 45.94 3.18
2345 3392 4.386350 TGTCGCATGCATGAAAGAAATTTG 59.614 37.500 30.64 0.46 0.00 2.32
2347 3394 4.622313 TCGCATGCATGAAAGAAATTTGTC 59.378 37.500 30.64 6.46 0.00 3.18
2434 3497 2.230660 AGAAAGCAGTAGGTGGCAAAC 58.769 47.619 0.00 0.00 0.00 2.93
2491 3577 1.015607 TACTGTGCATGCTCTGTGCG 61.016 55.000 30.60 13.92 45.37 5.34
2503 3589 0.898326 TCTGTGCGCCTCTGTTCCTA 60.898 55.000 4.18 0.00 0.00 2.94
2504 3590 0.037326 CTGTGCGCCTCTGTTCCTAA 60.037 55.000 4.18 0.00 0.00 2.69
2638 5220 2.602676 GGGACCAGGCCACTTGCTA 61.603 63.158 5.01 0.00 40.92 3.49
2706 5300 1.731720 GAGTGACAGCAACTGGATCC 58.268 55.000 4.20 4.20 35.51 3.36
2781 5379 4.180817 CCCCAATTTTAAACGAATCTGCC 58.819 43.478 0.00 0.00 0.00 4.85
2795 5409 4.261741 CGAATCTGCCATCTTTAATTGGGG 60.262 45.833 0.00 0.00 33.40 4.96
2798 5412 3.768757 TCTGCCATCTTTAATTGGGGTTG 59.231 43.478 0.00 0.00 33.40 3.77
2838 5452 8.463930 TTTTGAAGGTGTTGATCTGATTTAGT 57.536 30.769 0.00 0.00 0.00 2.24
2839 5453 8.463930 TTTGAAGGTGTTGATCTGATTTAGTT 57.536 30.769 0.00 0.00 0.00 2.24
2840 5454 8.463930 TTGAAGGTGTTGATCTGATTTAGTTT 57.536 30.769 0.00 0.00 0.00 2.66
2841 5455 7.874940 TGAAGGTGTTGATCTGATTTAGTTTG 58.125 34.615 0.00 0.00 0.00 2.93
2842 5456 7.502226 TGAAGGTGTTGATCTGATTTAGTTTGT 59.498 33.333 0.00 0.00 0.00 2.83
2843 5457 8.918202 AAGGTGTTGATCTGATTTAGTTTGTA 57.082 30.769 0.00 0.00 0.00 2.41
3028 5653 1.465187 GGAGAACCGCAATAACAACGC 60.465 52.381 0.00 0.00 0.00 4.84
3257 5882 1.121407 CCATCATCCGCTCCACCCTA 61.121 60.000 0.00 0.00 0.00 3.53
3556 7652 3.492656 GCGATTGCCATCTGGTTCTAGTA 60.493 47.826 0.00 0.00 37.57 1.82
3579 7675 2.237643 GGAATCCTCCGTACTACCTCC 58.762 57.143 0.00 0.00 30.03 4.30
3580 7676 2.158490 GGAATCCTCCGTACTACCTCCT 60.158 54.545 0.00 0.00 30.03 3.69
3581 7677 3.564264 GAATCCTCCGTACTACCTCCTT 58.436 50.000 0.00 0.00 0.00 3.36
3582 7678 3.684408 ATCCTCCGTACTACCTCCTTT 57.316 47.619 0.00 0.00 0.00 3.11
3583 7679 3.463048 TCCTCCGTACTACCTCCTTTT 57.537 47.619 0.00 0.00 0.00 2.27
3584 7680 3.359950 TCCTCCGTACTACCTCCTTTTC 58.640 50.000 0.00 0.00 0.00 2.29
3585 7681 3.094572 CCTCCGTACTACCTCCTTTTCA 58.905 50.000 0.00 0.00 0.00 2.69
3586 7682 3.130693 CCTCCGTACTACCTCCTTTTCAG 59.869 52.174 0.00 0.00 0.00 3.02
3587 7683 3.762823 CTCCGTACTACCTCCTTTTCAGT 59.237 47.826 0.00 0.00 0.00 3.41
3588 7684 4.154942 TCCGTACTACCTCCTTTTCAGTT 58.845 43.478 0.00 0.00 0.00 3.16
3589 7685 4.590222 TCCGTACTACCTCCTTTTCAGTTT 59.410 41.667 0.00 0.00 0.00 2.66
3590 7686 5.774690 TCCGTACTACCTCCTTTTCAGTTTA 59.225 40.000 0.00 0.00 0.00 2.01
3591 7687 5.866092 CCGTACTACCTCCTTTTCAGTTTAC 59.134 44.000 0.00 0.00 0.00 2.01
3592 7688 6.449698 CGTACTACCTCCTTTTCAGTTTACA 58.550 40.000 0.00 0.00 0.00 2.41
3593 7689 6.925165 CGTACTACCTCCTTTTCAGTTTACAA 59.075 38.462 0.00 0.00 0.00 2.41
3594 7690 7.439056 CGTACTACCTCCTTTTCAGTTTACAAA 59.561 37.037 0.00 0.00 0.00 2.83
3595 7691 9.281371 GTACTACCTCCTTTTCAGTTTACAAAT 57.719 33.333 0.00 0.00 0.00 2.32
3596 7692 8.392372 ACTACCTCCTTTTCAGTTTACAAATC 57.608 34.615 0.00 0.00 0.00 2.17
3597 7693 6.650427 ACCTCCTTTTCAGTTTACAAATCC 57.350 37.500 0.00 0.00 0.00 3.01
3598 7694 6.373759 ACCTCCTTTTCAGTTTACAAATCCT 58.626 36.000 0.00 0.00 0.00 3.24
3599 7695 6.265422 ACCTCCTTTTCAGTTTACAAATCCTG 59.735 38.462 0.00 0.00 0.00 3.86
3600 7696 6.084326 TCCTTTTCAGTTTACAAATCCTGC 57.916 37.500 0.00 0.00 0.00 4.85
3601 7697 4.917415 CCTTTTCAGTTTACAAATCCTGCG 59.083 41.667 0.00 0.00 0.00 5.18
3602 7698 3.552604 TTCAGTTTACAAATCCTGCGC 57.447 42.857 0.00 0.00 0.00 6.09
3603 7699 1.463056 TCAGTTTACAAATCCTGCGCG 59.537 47.619 0.00 0.00 0.00 6.86
3604 7700 1.196808 CAGTTTACAAATCCTGCGCGT 59.803 47.619 8.43 0.00 0.00 6.01
3605 7701 2.413796 CAGTTTACAAATCCTGCGCGTA 59.586 45.455 8.43 0.71 0.00 4.42
3606 7702 3.063452 CAGTTTACAAATCCTGCGCGTAT 59.937 43.478 8.43 0.00 0.00 3.06
3607 7703 4.269123 CAGTTTACAAATCCTGCGCGTATA 59.731 41.667 8.43 0.00 0.00 1.47
3608 7704 5.050363 CAGTTTACAAATCCTGCGCGTATAT 60.050 40.000 8.43 0.00 0.00 0.86
3609 7705 6.144886 CAGTTTACAAATCCTGCGCGTATATA 59.855 38.462 8.43 0.00 0.00 0.86
3610 7706 6.872020 AGTTTACAAATCCTGCGCGTATATAT 59.128 34.615 8.43 0.00 0.00 0.86
3611 7707 8.030692 AGTTTACAAATCCTGCGCGTATATATA 58.969 33.333 8.43 0.00 0.00 0.86
3612 7708 7.980742 TTACAAATCCTGCGCGTATATATAG 57.019 36.000 8.43 0.00 0.00 1.31
3613 7709 5.348986 ACAAATCCTGCGCGTATATATAGG 58.651 41.667 8.43 7.88 0.00 2.57
3614 7710 5.105473 ACAAATCCTGCGCGTATATATAGGT 60.105 40.000 8.43 0.00 0.00 3.08
3615 7711 5.593679 AATCCTGCGCGTATATATAGGTT 57.406 39.130 8.43 0.00 0.00 3.50
3616 7712 4.365899 TCCTGCGCGTATATATAGGTTG 57.634 45.455 8.43 7.91 0.00 3.77
3617 7713 2.858344 CCTGCGCGTATATATAGGTTGC 59.142 50.000 8.43 17.50 0.00 4.17
3618 7714 2.858344 CTGCGCGTATATATAGGTTGCC 59.142 50.000 19.68 9.57 0.00 4.52
3619 7715 2.231721 TGCGCGTATATATAGGTTGCCA 59.768 45.455 19.68 11.11 0.00 4.92
3620 7716 3.255725 GCGCGTATATATAGGTTGCCAA 58.744 45.455 8.43 0.00 0.00 4.52
3621 7717 3.869246 GCGCGTATATATAGGTTGCCAAT 59.131 43.478 8.43 0.00 0.00 3.16
3622 7718 4.331717 GCGCGTATATATAGGTTGCCAATT 59.668 41.667 8.43 0.00 0.00 2.32
3623 7719 5.163794 GCGCGTATATATAGGTTGCCAATTT 60.164 40.000 8.43 0.00 0.00 1.82
3624 7720 6.622028 GCGCGTATATATAGGTTGCCAATTTT 60.622 38.462 8.43 0.00 0.00 1.82
3625 7721 7.413219 GCGCGTATATATAGGTTGCCAATTTTA 60.413 37.037 8.43 0.00 0.00 1.52
3626 7722 8.609176 CGCGTATATATAGGTTGCCAATTTTAT 58.391 33.333 12.71 0.00 0.00 1.40
3627 7723 9.931210 GCGTATATATAGGTTGCCAATTTTATC 57.069 33.333 12.71 0.00 0.00 1.75
3631 7727 5.869649 ATAGGTTGCCAATTTTATCACCC 57.130 39.130 0.00 0.00 0.00 4.61
3632 7728 3.790126 AGGTTGCCAATTTTATCACCCT 58.210 40.909 0.00 0.00 0.00 4.34
3633 7729 4.941713 AGGTTGCCAATTTTATCACCCTA 58.058 39.130 0.00 0.00 0.00 3.53
3634 7730 5.337788 AGGTTGCCAATTTTATCACCCTAA 58.662 37.500 0.00 0.00 0.00 2.69
3635 7731 5.186992 AGGTTGCCAATTTTATCACCCTAAC 59.813 40.000 0.00 0.00 0.00 2.34
3636 7732 5.046950 GGTTGCCAATTTTATCACCCTAACA 60.047 40.000 0.00 0.00 0.00 2.41
3637 7733 6.351796 GGTTGCCAATTTTATCACCCTAACAT 60.352 38.462 0.00 0.00 0.00 2.71
3638 7734 7.147811 GGTTGCCAATTTTATCACCCTAACATA 60.148 37.037 0.00 0.00 0.00 2.29
3639 7735 7.962995 TGCCAATTTTATCACCCTAACATAA 57.037 32.000 0.00 0.00 0.00 1.90
3640 7736 8.367660 TGCCAATTTTATCACCCTAACATAAA 57.632 30.769 0.00 0.00 0.00 1.40
3641 7737 8.254508 TGCCAATTTTATCACCCTAACATAAAC 58.745 33.333 0.00 0.00 0.00 2.01
3642 7738 8.474831 GCCAATTTTATCACCCTAACATAAACT 58.525 33.333 0.00 0.00 0.00 2.66
3683 7779 7.668525 ATACCTTTTGAAAGTAGAAACTCCG 57.331 36.000 3.09 0.00 33.75 4.63
3684 7780 5.677567 ACCTTTTGAAAGTAGAAACTCCGA 58.322 37.500 3.09 0.00 33.75 4.55
3685 7781 6.117488 ACCTTTTGAAAGTAGAAACTCCGAA 58.883 36.000 3.09 0.00 33.75 4.30
3686 7782 6.600427 ACCTTTTGAAAGTAGAAACTCCGAAA 59.400 34.615 3.09 0.00 33.75 3.46
3687 7783 7.284716 ACCTTTTGAAAGTAGAAACTCCGAAAT 59.715 33.333 3.09 0.00 33.75 2.17
3688 7784 8.135529 CCTTTTGAAAGTAGAAACTCCGAAATT 58.864 33.333 3.09 0.00 33.75 1.82
3689 7785 9.516314 CTTTTGAAAGTAGAAACTCCGAAATTT 57.484 29.630 0.00 0.00 33.75 1.82
3693 7789 9.280174 TGAAAGTAGAAACTCCGAAATTTATGT 57.720 29.630 0.00 0.00 33.75 2.29
3695 7791 9.893305 AAAGTAGAAACTCCGAAATTTATGTTG 57.107 29.630 0.00 0.00 33.75 3.33
3696 7792 8.040716 AGTAGAAACTCCGAAATTTATGTTGG 57.959 34.615 0.00 0.00 0.00 3.77
3697 7793 6.894339 AGAAACTCCGAAATTTATGTTGGT 57.106 33.333 0.00 0.00 0.00 3.67
3698 7794 7.989416 AGAAACTCCGAAATTTATGTTGGTA 57.011 32.000 0.00 0.00 0.00 3.25
3699 7795 8.575649 AGAAACTCCGAAATTTATGTTGGTAT 57.424 30.769 0.00 0.00 0.00 2.73
3700 7796 9.675464 AGAAACTCCGAAATTTATGTTGGTATA 57.325 29.630 0.00 0.00 0.00 1.47
3753 7849 4.189639 GTCAAATTGACGACCTAGGAGT 57.810 45.455 17.98 15.04 37.67 3.85
3754 7850 5.320549 GTCAAATTGACGACCTAGGAGTA 57.679 43.478 17.98 1.50 37.67 2.59
3755 7851 5.100943 GTCAAATTGACGACCTAGGAGTAC 58.899 45.833 17.98 9.52 37.67 2.73
3756 7852 4.103357 CAAATTGACGACCTAGGAGTACG 58.897 47.826 17.98 16.64 0.00 3.67
3757 7853 1.089920 TTGACGACCTAGGAGTACGC 58.910 55.000 17.98 11.35 0.00 4.42
3758 7854 1.086067 TGACGACCTAGGAGTACGCG 61.086 60.000 17.98 3.53 0.00 6.01
3759 7855 1.078848 ACGACCTAGGAGTACGCGT 60.079 57.895 19.17 19.17 0.00 6.01
3760 7856 0.175760 ACGACCTAGGAGTACGCGTA 59.824 55.000 17.98 16.41 0.00 4.42
3761 7857 0.579156 CGACCTAGGAGTACGCGTAC 59.421 60.000 35.97 35.97 36.35 3.67
3763 7859 1.278038 CCTAGGAGTACGCGTACGC 59.722 63.158 35.50 35.50 45.53 4.42
3766 7862 3.512516 GGAGTACGCGTACGCCCT 61.513 66.667 43.82 28.72 46.18 5.19
3767 7863 2.277756 GAGTACGCGTACGCCCTG 60.278 66.667 35.87 21.66 45.53 4.45
3768 7864 3.044059 GAGTACGCGTACGCCCTGT 62.044 63.158 35.87 25.85 45.53 4.00
3769 7865 1.705337 GAGTACGCGTACGCCCTGTA 61.705 60.000 35.87 24.83 45.53 2.74
3770 7866 1.136565 GTACGCGTACGCCCTGTAA 59.863 57.895 31.27 10.33 45.53 2.41
3771 7867 0.455972 GTACGCGTACGCCCTGTAAA 60.456 55.000 31.27 9.62 45.53 2.01
3772 7868 0.455972 TACGCGTACGCCCTGTAAAC 60.456 55.000 32.64 4.17 45.53 2.01
3773 7869 2.447070 CGCGTACGCCCTGTAAACC 61.447 63.158 32.64 3.40 37.98 3.27
3774 7870 2.447070 GCGTACGCCCTGTAAACCG 61.447 63.158 29.51 0.00 34.07 4.44
3775 7871 1.212490 CGTACGCCCTGTAAACCGA 59.788 57.895 0.52 0.00 34.07 4.69
3776 7872 0.799534 CGTACGCCCTGTAAACCGAG 60.800 60.000 0.52 0.00 34.07 4.63
3777 7873 0.527565 GTACGCCCTGTAAACCGAGA 59.472 55.000 0.00 0.00 34.07 4.04
3778 7874 0.813184 TACGCCCTGTAAACCGAGAG 59.187 55.000 0.00 0.00 0.00 3.20
3779 7875 0.896940 ACGCCCTGTAAACCGAGAGA 60.897 55.000 0.00 0.00 0.00 3.10
3780 7876 0.179134 CGCCCTGTAAACCGAGAGAG 60.179 60.000 0.00 0.00 0.00 3.20
3781 7877 1.183549 GCCCTGTAAACCGAGAGAGA 58.816 55.000 0.00 0.00 0.00 3.10
3782 7878 1.135333 GCCCTGTAAACCGAGAGAGAG 59.865 57.143 0.00 0.00 0.00 3.20
3783 7879 1.751924 CCCTGTAAACCGAGAGAGAGG 59.248 57.143 0.00 0.00 0.00 3.69
3784 7880 2.448453 CCTGTAAACCGAGAGAGAGGT 58.552 52.381 0.00 0.00 43.68 3.85
3785 7881 3.618351 CCTGTAAACCGAGAGAGAGGTA 58.382 50.000 0.00 0.00 40.37 3.08
3786 7882 3.628487 CCTGTAAACCGAGAGAGAGGTAG 59.372 52.174 0.00 0.00 40.37 3.18
3787 7883 4.263435 CTGTAAACCGAGAGAGAGGTAGT 58.737 47.826 0.00 0.00 40.37 2.73
3822 7918 4.423625 ACTTCATAACCATGAGCTACCC 57.576 45.455 0.00 0.00 42.11 3.69
3844 7940 4.331717 CCGATAATAAATATGTGACCGCCC 59.668 45.833 0.00 0.00 0.00 6.13
3940 8036 6.436261 TGTAAACAAAACTGACGTTGTTCAA 58.564 32.000 8.05 0.00 44.96 2.69
3973 8072 1.672145 GCCTCTTCCTCACGTGTAACC 60.672 57.143 16.51 0.00 0.00 2.85
3974 8073 1.616865 CCTCTTCCTCACGTGTAACCA 59.383 52.381 16.51 0.00 0.00 3.67
3976 8075 2.296471 CTCTTCCTCACGTGTAACCACT 59.704 50.000 16.51 0.00 39.55 4.00
3984 8083 1.512156 CGTGTAACCACTGGCCAACC 61.512 60.000 7.01 0.00 39.55 3.77
4001 8100 2.740447 CAACCTAGGTTTAACCGACTGC 59.260 50.000 24.99 0.00 44.90 4.40
4181 11784 1.699730 TAGATTTCCGGCGATCTCCA 58.300 50.000 18.85 4.54 34.60 3.86
4308 11922 6.548441 TCAATTAAAACTTGGACTACACCG 57.452 37.500 0.00 0.00 0.00 4.94
4310 11924 6.938030 TCAATTAAAACTTGGACTACACCGAT 59.062 34.615 0.00 0.00 0.00 4.18
4329 11943 6.464834 CACCGATTGCTAAACGTTCTATTTTC 59.535 38.462 0.00 0.00 0.00 2.29
4331 11945 7.018826 CCGATTGCTAAACGTTCTATTTTCAA 58.981 34.615 0.00 0.26 0.00 2.69
4426 12048 4.108124 TCCCTAGTGCACTTATCCCTCTAT 59.892 45.833 27.06 0.00 0.00 1.98
4434 12056 3.681897 CACTTATCCCTCTATTCGCATGC 59.318 47.826 7.91 7.91 0.00 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 5.341872 TCTTGTGCCAAATTATTCCATGG 57.658 39.130 4.97 4.97 36.00 3.66
33 34 4.853924 AATTGTTGACGGCATTCTTCTT 57.146 36.364 0.00 0.00 0.00 2.52
76 77 0.179018 ACCTCCACAGTCCAAAGCAC 60.179 55.000 0.00 0.00 0.00 4.40
81 85 1.507140 ACTCAACCTCCACAGTCCAA 58.493 50.000 0.00 0.00 0.00 3.53
123 138 5.048154 TCAGAGCCTCAGATCGATTTATCAG 60.048 44.000 0.00 0.00 32.16 2.90
143 158 9.429359 GAATACAAGTCAAGAGAAAGATTCAGA 57.571 33.333 0.00 0.00 0.00 3.27
187 205 2.611518 CTAGGACAAACCGAGCAAGAG 58.388 52.381 0.00 0.00 44.74 2.85
197 215 5.355596 CATGATGTCTCTCCTAGGACAAAC 58.644 45.833 7.62 6.55 44.10 2.93
272 297 1.154225 CTGGCACGGCATTTCGTTC 60.154 57.895 0.00 0.00 41.86 3.95
319 344 1.628846 GAAGCACTGGGAAGGGTCTAA 59.371 52.381 0.00 0.00 0.00 2.10
320 345 1.276622 GAAGCACTGGGAAGGGTCTA 58.723 55.000 0.00 0.00 0.00 2.59
321 346 0.768221 TGAAGCACTGGGAAGGGTCT 60.768 55.000 0.00 0.00 0.00 3.85
322 347 0.110486 TTGAAGCACTGGGAAGGGTC 59.890 55.000 0.00 0.00 0.00 4.46
323 348 0.111253 CTTGAAGCACTGGGAAGGGT 59.889 55.000 0.00 0.00 0.00 4.34
324 349 0.610232 CCTTGAAGCACTGGGAAGGG 60.610 60.000 0.00 0.00 31.24 3.95
325 350 0.111253 ACCTTGAAGCACTGGGAAGG 59.889 55.000 0.00 0.00 39.35 3.46
326 351 1.242076 CACCTTGAAGCACTGGGAAG 58.758 55.000 0.00 0.00 0.00 3.46
327 352 0.550914 ACACCTTGAAGCACTGGGAA 59.449 50.000 0.00 0.00 0.00 3.97
328 353 1.071699 GTACACCTTGAAGCACTGGGA 59.928 52.381 0.00 0.00 0.00 4.37
329 354 1.202758 TGTACACCTTGAAGCACTGGG 60.203 52.381 0.00 0.00 0.00 4.45
330 355 2.146342 CTGTACACCTTGAAGCACTGG 58.854 52.381 0.00 0.00 0.00 4.00
331 356 2.146342 CCTGTACACCTTGAAGCACTG 58.854 52.381 0.00 0.00 0.00 3.66
332 357 1.768870 ACCTGTACACCTTGAAGCACT 59.231 47.619 0.00 0.00 0.00 4.40
333 358 1.873591 CACCTGTACACCTTGAAGCAC 59.126 52.381 0.00 0.00 0.00 4.40
334 359 1.813862 GCACCTGTACACCTTGAAGCA 60.814 52.381 0.00 0.00 0.00 3.91
335 360 0.875059 GCACCTGTACACCTTGAAGC 59.125 55.000 0.00 0.00 0.00 3.86
336 361 2.550830 AGCACCTGTACACCTTGAAG 57.449 50.000 0.00 0.00 0.00 3.02
337 362 3.244422 CCTTAGCACCTGTACACCTTGAA 60.244 47.826 0.00 0.00 0.00 2.69
338 363 2.301870 CCTTAGCACCTGTACACCTTGA 59.698 50.000 0.00 0.00 0.00 3.02
339 364 2.301870 TCCTTAGCACCTGTACACCTTG 59.698 50.000 0.00 0.00 0.00 3.61
340 365 2.616524 TCCTTAGCACCTGTACACCTT 58.383 47.619 0.00 0.00 0.00 3.50
341 366 2.320681 TCCTTAGCACCTGTACACCT 57.679 50.000 0.00 0.00 0.00 4.00
342 367 2.906354 CATCCTTAGCACCTGTACACC 58.094 52.381 0.00 0.00 0.00 4.16
343 368 2.280628 GCATCCTTAGCACCTGTACAC 58.719 52.381 0.00 0.00 0.00 2.90
344 369 1.209504 GGCATCCTTAGCACCTGTACA 59.790 52.381 0.00 0.00 0.00 2.90
345 370 1.209504 TGGCATCCTTAGCACCTGTAC 59.790 52.381 0.00 0.00 0.00 2.90
346 371 1.578897 TGGCATCCTTAGCACCTGTA 58.421 50.000 0.00 0.00 0.00 2.74
347 372 0.921896 ATGGCATCCTTAGCACCTGT 59.078 50.000 0.00 0.00 0.00 4.00
348 373 2.936919 TATGGCATCCTTAGCACCTG 57.063 50.000 1.65 0.00 0.00 4.00
349 374 4.223923 GTCTATATGGCATCCTTAGCACCT 59.776 45.833 1.65 0.00 0.00 4.00
350 375 4.020218 TGTCTATATGGCATCCTTAGCACC 60.020 45.833 1.65 0.00 0.00 5.01
351 376 5.152623 TGTCTATATGGCATCCTTAGCAC 57.847 43.478 1.65 5.72 0.00 4.40
352 377 5.823861 TTGTCTATATGGCATCCTTAGCA 57.176 39.130 1.65 4.59 0.00 3.49
353 378 7.510549 TTTTTGTCTATATGGCATCCTTAGC 57.489 36.000 1.65 2.26 0.00 3.09
376 401 9.669887 TCTTTAATTGCTTTGCCATATCATTTT 57.330 25.926 0.00 0.00 0.00 1.82
377 402 9.321562 CTCTTTAATTGCTTTGCCATATCATTT 57.678 29.630 0.00 0.00 0.00 2.32
378 403 7.929785 CCTCTTTAATTGCTTTGCCATATCATT 59.070 33.333 0.00 0.00 0.00 2.57
379 404 7.288389 TCCTCTTTAATTGCTTTGCCATATCAT 59.712 33.333 0.00 0.00 0.00 2.45
380 405 6.606796 TCCTCTTTAATTGCTTTGCCATATCA 59.393 34.615 0.00 0.00 0.00 2.15
381 406 7.013655 TCTCCTCTTTAATTGCTTTGCCATATC 59.986 37.037 0.00 0.00 0.00 1.63
382 407 6.835488 TCTCCTCTTTAATTGCTTTGCCATAT 59.165 34.615 0.00 0.00 0.00 1.78
383 408 6.186957 TCTCCTCTTTAATTGCTTTGCCATA 58.813 36.000 0.00 0.00 0.00 2.74
384 409 5.018809 TCTCCTCTTTAATTGCTTTGCCAT 58.981 37.500 0.00 0.00 0.00 4.40
385 410 4.406456 TCTCCTCTTTAATTGCTTTGCCA 58.594 39.130 0.00 0.00 0.00 4.92
386 411 4.702131 TCTCTCCTCTTTAATTGCTTTGCC 59.298 41.667 0.00 0.00 0.00 4.52
387 412 5.645497 TCTCTCTCCTCTTTAATTGCTTTGC 59.355 40.000 0.00 0.00 0.00 3.68
388 413 6.878389 ACTCTCTCTCCTCTTTAATTGCTTTG 59.122 38.462 0.00 0.00 0.00 2.77
389 414 7.014988 ACTCTCTCTCCTCTTTAATTGCTTT 57.985 36.000 0.00 0.00 0.00 3.51
390 415 6.619329 ACTCTCTCTCCTCTTTAATTGCTT 57.381 37.500 0.00 0.00 0.00 3.91
391 416 7.912778 ATACTCTCTCTCCTCTTTAATTGCT 57.087 36.000 0.00 0.00 0.00 3.91
400 425 9.401496 AGGTTACTATAATACTCTCTCTCCTCT 57.599 37.037 0.00 0.00 0.00 3.69
416 441 9.525409 GCATCGTTTCTTTCTAAGGTTACTATA 57.475 33.333 0.00 0.00 0.00 1.31
417 442 8.258708 AGCATCGTTTCTTTCTAAGGTTACTAT 58.741 33.333 0.00 0.00 0.00 2.12
418 443 7.609056 AGCATCGTTTCTTTCTAAGGTTACTA 58.391 34.615 0.00 0.00 0.00 1.82
419 444 6.465084 AGCATCGTTTCTTTCTAAGGTTACT 58.535 36.000 0.00 0.00 0.00 2.24
420 445 6.723131 AGCATCGTTTCTTTCTAAGGTTAC 57.277 37.500 0.00 0.00 0.00 2.50
421 446 7.064253 GCTTAGCATCGTTTCTTTCTAAGGTTA 59.936 37.037 0.00 0.00 35.69 2.85
422 447 6.128254 GCTTAGCATCGTTTCTTTCTAAGGTT 60.128 38.462 0.00 0.00 35.69 3.50
423 448 5.351740 GCTTAGCATCGTTTCTTTCTAAGGT 59.648 40.000 0.00 0.00 35.69 3.50
424 449 5.351465 TGCTTAGCATCGTTTCTTTCTAAGG 59.649 40.000 1.39 0.00 35.69 2.69
425 450 6.128553 TGTGCTTAGCATCGTTTCTTTCTAAG 60.129 38.462 11.03 0.00 41.91 2.18
426 451 5.699001 TGTGCTTAGCATCGTTTCTTTCTAA 59.301 36.000 11.03 0.00 41.91 2.10
427 452 5.120208 GTGTGCTTAGCATCGTTTCTTTCTA 59.880 40.000 11.03 0.00 41.91 2.10
428 453 4.065088 TGTGCTTAGCATCGTTTCTTTCT 58.935 39.130 11.03 0.00 41.91 2.52
429 454 4.151798 GTGTGCTTAGCATCGTTTCTTTC 58.848 43.478 11.03 0.00 41.91 2.62
430 455 3.563808 TGTGTGCTTAGCATCGTTTCTTT 59.436 39.130 11.03 0.00 41.91 2.52
431 456 3.138304 TGTGTGCTTAGCATCGTTTCTT 58.862 40.909 11.03 0.00 41.91 2.52
432 457 2.766313 TGTGTGCTTAGCATCGTTTCT 58.234 42.857 11.03 0.00 41.91 2.52
433 458 3.536158 TTGTGTGCTTAGCATCGTTTC 57.464 42.857 11.03 0.00 41.91 2.78
434 459 3.550030 GGTTTGTGTGCTTAGCATCGTTT 60.550 43.478 11.03 0.00 41.91 3.60
435 460 2.031157 GGTTTGTGTGCTTAGCATCGTT 60.031 45.455 11.03 0.00 41.91 3.85
436 461 1.535462 GGTTTGTGTGCTTAGCATCGT 59.465 47.619 11.03 0.00 41.91 3.73
437 462 1.806542 AGGTTTGTGTGCTTAGCATCG 59.193 47.619 11.03 0.00 41.91 3.84
438 463 4.396166 ACATAGGTTTGTGTGCTTAGCATC 59.604 41.667 11.03 7.76 41.91 3.91
439 464 4.156556 CACATAGGTTTGTGTGCTTAGCAT 59.843 41.667 11.03 0.00 41.91 3.79
440 465 3.501828 CACATAGGTTTGTGTGCTTAGCA 59.498 43.478 1.39 1.39 41.65 3.49
441 466 3.751175 TCACATAGGTTTGTGTGCTTAGC 59.249 43.478 0.00 0.00 45.73 3.09
442 467 5.940192 TTCACATAGGTTTGTGTGCTTAG 57.060 39.130 4.67 0.00 45.73 2.18
443 468 6.544197 TCTTTTCACATAGGTTTGTGTGCTTA 59.456 34.615 4.67 0.00 45.73 3.09
444 469 5.359576 TCTTTTCACATAGGTTTGTGTGCTT 59.640 36.000 4.67 0.00 45.73 3.91
445 470 4.887071 TCTTTTCACATAGGTTTGTGTGCT 59.113 37.500 4.67 0.00 45.73 4.40
446 471 4.976116 GTCTTTTCACATAGGTTTGTGTGC 59.024 41.667 4.67 0.00 45.73 4.57
447 472 6.377327 AGTCTTTTCACATAGGTTTGTGTG 57.623 37.500 4.67 0.00 45.73 3.82
448 473 7.936847 TGATAGTCTTTTCACATAGGTTTGTGT 59.063 33.333 4.67 0.00 45.73 3.72
449 474 8.322906 TGATAGTCTTTTCACATAGGTTTGTG 57.677 34.615 0.00 0.00 46.70 3.33
450 475 8.784043 GTTGATAGTCTTTTCACATAGGTTTGT 58.216 33.333 0.00 0.00 0.00 2.83
451 476 8.237267 GGTTGATAGTCTTTTCACATAGGTTTG 58.763 37.037 0.00 0.00 0.00 2.93
452 477 7.942341 TGGTTGATAGTCTTTTCACATAGGTTT 59.058 33.333 0.00 0.00 0.00 3.27
453 478 7.458397 TGGTTGATAGTCTTTTCACATAGGTT 58.542 34.615 0.00 0.00 0.00 3.50
454 479 7.016153 TGGTTGATAGTCTTTTCACATAGGT 57.984 36.000 0.00 0.00 0.00 3.08
455 480 7.921786 TTGGTTGATAGTCTTTTCACATAGG 57.078 36.000 0.00 0.00 0.00 2.57
457 482 9.952030 TGTATTGGTTGATAGTCTTTTCACATA 57.048 29.630 0.00 0.00 0.00 2.29
458 483 8.862325 TGTATTGGTTGATAGTCTTTTCACAT 57.138 30.769 0.00 0.00 0.00 3.21
459 484 8.729756 CATGTATTGGTTGATAGTCTTTTCACA 58.270 33.333 0.00 0.00 0.00 3.58
460 485 8.946085 TCATGTATTGGTTGATAGTCTTTTCAC 58.054 33.333 0.00 0.00 0.00 3.18
461 486 9.166173 CTCATGTATTGGTTGATAGTCTTTTCA 57.834 33.333 0.00 0.00 0.00 2.69
462 487 8.616076 CCTCATGTATTGGTTGATAGTCTTTTC 58.384 37.037 0.00 0.00 0.00 2.29
463 488 7.557719 CCCTCATGTATTGGTTGATAGTCTTTT 59.442 37.037 0.00 0.00 0.00 2.27
464 489 7.056635 CCCTCATGTATTGGTTGATAGTCTTT 58.943 38.462 0.00 0.00 0.00 2.52
465 490 6.386927 TCCCTCATGTATTGGTTGATAGTCTT 59.613 38.462 0.00 0.00 0.00 3.01
466 491 5.905331 TCCCTCATGTATTGGTTGATAGTCT 59.095 40.000 0.00 0.00 0.00 3.24
467 492 5.992217 GTCCCTCATGTATTGGTTGATAGTC 59.008 44.000 0.00 0.00 0.00 2.59
468 493 5.667626 AGTCCCTCATGTATTGGTTGATAGT 59.332 40.000 0.00 0.00 0.00 2.12
469 494 6.179906 AGTCCCTCATGTATTGGTTGATAG 57.820 41.667 0.00 0.00 0.00 2.08
470 495 6.575244 AAGTCCCTCATGTATTGGTTGATA 57.425 37.500 0.00 0.00 0.00 2.15
471 496 5.456921 AAGTCCCTCATGTATTGGTTGAT 57.543 39.130 0.00 0.00 0.00 2.57
472 497 4.927267 AAGTCCCTCATGTATTGGTTGA 57.073 40.909 0.00 0.00 0.00 3.18
473 498 7.645058 ATTAAAGTCCCTCATGTATTGGTTG 57.355 36.000 0.00 0.00 0.00 3.77
474 499 7.673926 ACAATTAAAGTCCCTCATGTATTGGTT 59.326 33.333 0.00 0.00 0.00 3.67
475 500 7.182060 ACAATTAAAGTCCCTCATGTATTGGT 58.818 34.615 0.00 0.00 0.00 3.67
476 501 7.645058 ACAATTAAAGTCCCTCATGTATTGG 57.355 36.000 0.00 0.00 0.00 3.16
480 505 9.575868 TGTTTAACAATTAAAGTCCCTCATGTA 57.424 29.630 0.00 0.00 35.91 2.29
481 506 8.472007 TGTTTAACAATTAAAGTCCCTCATGT 57.528 30.769 0.00 0.00 35.91 3.21
482 507 9.927668 ATTGTTTAACAATTAAAGTCCCTCATG 57.072 29.630 16.57 0.00 45.80 3.07
497 522 9.248291 GCTTCTCTCATTGAAATTGTTTAACAA 57.752 29.630 13.12 13.12 42.95 2.83
498 523 8.632679 AGCTTCTCTCATTGAAATTGTTTAACA 58.367 29.630 0.00 0.00 0.00 2.41
499 524 9.468532 AAGCTTCTCTCATTGAAATTGTTTAAC 57.531 29.630 0.00 0.00 0.00 2.01
502 527 7.811713 GCTAAGCTTCTCTCATTGAAATTGTTT 59.188 33.333 0.00 0.00 0.00 2.83
503 528 7.176340 AGCTAAGCTTCTCTCATTGAAATTGTT 59.824 33.333 0.00 0.00 33.89 2.83
504 529 6.658391 AGCTAAGCTTCTCTCATTGAAATTGT 59.342 34.615 0.00 0.00 33.89 2.71
505 530 7.086230 AGCTAAGCTTCTCTCATTGAAATTG 57.914 36.000 0.00 0.00 33.89 2.32
506 531 7.281999 GGTAGCTAAGCTTCTCTCATTGAAATT 59.718 37.037 0.00 0.00 40.44 1.82
507 532 6.765512 GGTAGCTAAGCTTCTCTCATTGAAAT 59.234 38.462 0.00 0.00 40.44 2.17
508 533 6.109359 GGTAGCTAAGCTTCTCTCATTGAAA 58.891 40.000 0.00 0.00 40.44 2.69
509 534 5.187772 TGGTAGCTAAGCTTCTCTCATTGAA 59.812 40.000 0.00 0.00 40.44 2.69
510 535 4.711846 TGGTAGCTAAGCTTCTCTCATTGA 59.288 41.667 0.00 0.00 40.44 2.57
511 536 5.016051 TGGTAGCTAAGCTTCTCTCATTG 57.984 43.478 0.00 0.00 40.44 2.82
512 537 5.683876 TTGGTAGCTAAGCTTCTCTCATT 57.316 39.130 0.00 0.00 40.44 2.57
513 538 5.669477 CTTTGGTAGCTAAGCTTCTCTCAT 58.331 41.667 0.00 0.00 40.44 2.90
514 539 4.621747 GCTTTGGTAGCTAAGCTTCTCTCA 60.622 45.833 26.65 0.00 46.77 3.27
515 540 3.868661 GCTTTGGTAGCTAAGCTTCTCTC 59.131 47.826 26.65 3.60 46.77 3.20
516 541 3.867857 GCTTTGGTAGCTAAGCTTCTCT 58.132 45.455 26.65 3.75 46.77 3.10
542 567 5.423015 ACTAGTCTTCACAATGCATAGGTG 58.577 41.667 19.98 19.98 0.00 4.00
543 568 5.683876 ACTAGTCTTCACAATGCATAGGT 57.316 39.130 0.00 0.00 0.00 3.08
544 569 5.220739 GCAACTAGTCTTCACAATGCATAGG 60.221 44.000 0.00 0.00 33.00 2.57
545 570 5.583854 AGCAACTAGTCTTCACAATGCATAG 59.416 40.000 12.92 0.00 35.11 2.23
546 571 5.491070 AGCAACTAGTCTTCACAATGCATA 58.509 37.500 12.92 0.00 35.11 3.14
547 572 4.330250 AGCAACTAGTCTTCACAATGCAT 58.670 39.130 12.92 0.00 35.11 3.96
548 573 3.743521 AGCAACTAGTCTTCACAATGCA 58.256 40.909 12.92 0.00 35.11 3.96
549 574 5.639506 TCTTAGCAACTAGTCTTCACAATGC 59.360 40.000 0.00 0.00 0.00 3.56
550 575 7.840342 ATCTTAGCAACTAGTCTTCACAATG 57.160 36.000 0.00 0.00 0.00 2.82
551 576 8.854614 AAATCTTAGCAACTAGTCTTCACAAT 57.145 30.769 0.00 0.00 0.00 2.71
552 577 8.677148 AAAATCTTAGCAACTAGTCTTCACAA 57.323 30.769 0.00 0.00 0.00 3.33
553 578 9.424319 CTAAAATCTTAGCAACTAGTCTTCACA 57.576 33.333 0.00 0.00 0.00 3.58
567 592 8.499967 GCTTAGATAAGGTGCTAAAATCTTAGC 58.500 37.037 3.71 3.71 44.46 3.09
568 593 9.547753 TGCTTAGATAAGGTGCTAAAATCTTAG 57.452 33.333 2.00 0.00 34.99 2.18
569 594 9.326413 GTGCTTAGATAAGGTGCTAAAATCTTA 57.674 33.333 2.00 0.00 33.95 2.10
570 595 7.283354 GGTGCTTAGATAAGGTGCTAAAATCTT 59.717 37.037 2.00 0.00 33.95 2.40
571 596 6.768381 GGTGCTTAGATAAGGTGCTAAAATCT 59.232 38.462 2.00 0.00 33.95 2.40
572 597 6.017026 GGGTGCTTAGATAAGGTGCTAAAATC 60.017 42.308 2.00 0.00 33.95 2.17
573 598 5.828328 GGGTGCTTAGATAAGGTGCTAAAAT 59.172 40.000 2.00 0.00 33.95 1.82
574 599 5.190677 GGGTGCTTAGATAAGGTGCTAAAA 58.809 41.667 2.00 0.00 33.95 1.52
575 600 4.226394 TGGGTGCTTAGATAAGGTGCTAAA 59.774 41.667 2.00 0.00 33.95 1.85
576 601 3.778075 TGGGTGCTTAGATAAGGTGCTAA 59.222 43.478 2.00 0.00 33.95 3.09
577 602 3.380393 TGGGTGCTTAGATAAGGTGCTA 58.620 45.455 2.00 0.00 33.95 3.49
578 603 2.196595 TGGGTGCTTAGATAAGGTGCT 58.803 47.619 2.00 0.00 33.95 4.40
579 604 2.710096 TGGGTGCTTAGATAAGGTGC 57.290 50.000 2.00 0.00 33.95 5.01
597 622 2.062971 AAGGCCTCTACCAATGCATG 57.937 50.000 5.23 0.00 0.00 4.06
598 623 3.048600 TCTAAGGCCTCTACCAATGCAT 58.951 45.455 5.23 0.00 0.00 3.96
599 624 2.170607 GTCTAAGGCCTCTACCAATGCA 59.829 50.000 5.23 0.00 0.00 3.96
600 625 2.170607 TGTCTAAGGCCTCTACCAATGC 59.829 50.000 5.23 0.00 0.00 3.56
601 626 3.742640 GCTGTCTAAGGCCTCTACCAATG 60.743 52.174 5.23 0.00 0.00 2.82
602 627 2.436173 GCTGTCTAAGGCCTCTACCAAT 59.564 50.000 5.23 0.00 0.00 3.16
603 628 1.831736 GCTGTCTAAGGCCTCTACCAA 59.168 52.381 5.23 0.00 0.00 3.67
604 629 1.486211 GCTGTCTAAGGCCTCTACCA 58.514 55.000 5.23 0.00 0.00 3.25
605 630 0.753867 GGCTGTCTAAGGCCTCTACC 59.246 60.000 5.23 0.00 45.73 3.18
613 638 5.819901 CCTTAATTTCAGAGGCTGTCTAAGG 59.180 44.000 0.00 0.00 32.51 2.69
614 639 6.314896 CACCTTAATTTCAGAGGCTGTCTAAG 59.685 42.308 0.00 0.00 32.51 2.18
618 643 4.327680 ACACCTTAATTTCAGAGGCTGTC 58.672 43.478 0.00 0.00 33.78 3.51
667 692 3.136123 CATGAGTGCCCCGCTTGG 61.136 66.667 0.00 0.00 0.00 3.61
669 694 0.749454 GATTCATGAGTGCCCCGCTT 60.749 55.000 0.00 0.00 0.00 4.68
671 696 1.153086 AGATTCATGAGTGCCCCGC 60.153 57.895 0.00 0.00 0.00 6.13
672 697 0.877649 CGAGATTCATGAGTGCCCCG 60.878 60.000 0.00 0.00 0.00 5.73
677 702 1.134580 ACAGGGCGAGATTCATGAGTG 60.135 52.381 0.00 0.00 0.00 3.51
697 912 3.025924 CGGTATCCGGTACTGCCTA 57.974 57.895 0.00 0.00 44.15 3.93
728 950 1.473434 GGAGCGGGATTCATTCTTCGT 60.473 52.381 0.00 0.00 0.00 3.85
853 1233 2.372688 GATGGGAGGTGGGAGGGA 59.627 66.667 0.00 0.00 0.00 4.20
932 1313 2.486203 GGATCGATCTCTGTATCGCTGT 59.514 50.000 23.96 0.00 46.51 4.40
933 1314 2.746904 AGGATCGATCTCTGTATCGCTG 59.253 50.000 23.96 0.00 46.51 5.18
939 1324 3.258622 TCGCTCTAGGATCGATCTCTGTA 59.741 47.826 23.96 10.34 0.00 2.74
941 1334 2.672874 CTCGCTCTAGGATCGATCTCTG 59.327 54.545 23.96 13.87 30.08 3.35
947 1340 1.584175 GTGTCTCGCTCTAGGATCGA 58.416 55.000 0.00 0.00 0.00 3.59
948 1341 0.589223 GGTGTCTCGCTCTAGGATCG 59.411 60.000 0.00 0.00 0.00 3.69
951 1344 1.076923 GGGGTGTCTCGCTCTAGGA 60.077 63.158 0.00 0.00 0.00 2.94
952 1345 2.482333 CGGGGTGTCTCGCTCTAGG 61.482 68.421 0.00 0.00 0.00 3.02
953 1346 1.030488 TTCGGGGTGTCTCGCTCTAG 61.030 60.000 0.00 0.00 0.00 2.43
954 1347 1.001764 TTCGGGGTGTCTCGCTCTA 60.002 57.895 0.00 0.00 0.00 2.43
955 1348 2.282958 TTCGGGGTGTCTCGCTCT 60.283 61.111 0.00 0.00 0.00 4.09
956 1349 2.126031 GTTCGGGGTGTCTCGCTC 60.126 66.667 0.00 0.00 0.00 5.03
958 1351 2.029964 TTGTTCGGGGTGTCTCGC 59.970 61.111 0.00 0.00 0.00 5.03
960 1353 0.883370 GGTGTTGTTCGGGGTGTCTC 60.883 60.000 0.00 0.00 0.00 3.36
963 1356 1.452470 GTGGTGTTGTTCGGGGTGT 60.452 57.895 0.00 0.00 0.00 4.16
970 1371 0.738389 CTGGTGGTGTGGTGTTGTTC 59.262 55.000 0.00 0.00 0.00 3.18
988 1411 2.475466 GCGCCATGTATGTGCTGCT 61.475 57.895 0.00 0.00 0.00 4.24
989 1412 2.025156 GCGCCATGTATGTGCTGC 59.975 61.111 0.00 0.00 0.00 5.25
1167 1611 2.680352 GGGTCCGTCTCCAGCTCA 60.680 66.667 0.00 0.00 0.00 4.26
1692 2463 7.339976 AGCATGCATGTATATATGGCATGTTTA 59.660 33.333 28.04 17.13 40.55 2.01
1693 2464 6.153851 AGCATGCATGTATATATGGCATGTTT 59.846 34.615 28.04 20.58 40.55 2.83
1694 2465 5.655090 AGCATGCATGTATATATGGCATGTT 59.345 36.000 28.04 24.14 40.55 2.71
1698 2469 8.431222 TCTATAAGCATGCATGTATATATGGCA 58.569 33.333 26.79 9.49 0.00 4.92
1699 2470 8.837788 TCTATAAGCATGCATGTATATATGGC 57.162 34.615 26.79 9.98 0.00 4.40
1800 2627 4.975502 CGTGCATTTTCTTTAACTTGCTGA 59.024 37.500 0.00 0.00 0.00 4.26
1810 2637 1.476074 CACGCACGTGCATTTTCTTT 58.524 45.000 37.03 9.82 42.21 2.52
1878 2719 6.899393 TCAGCTGGATGTGAAATTAACTTT 57.101 33.333 15.13 0.00 0.00 2.66
1884 2728 3.575256 TGCTTTCAGCTGGATGTGAAATT 59.425 39.130 15.13 0.00 42.97 1.82
1918 2762 0.753262 ATAGCAAGCCGTAGACAGGG 59.247 55.000 0.00 0.00 0.00 4.45
1953 2806 2.422832 GGTGGTTTGTAAACGGACAACA 59.577 45.455 1.80 0.00 39.02 3.33
1956 2809 2.015587 GTGGTGGTTTGTAAACGGACA 58.984 47.619 1.80 0.00 39.77 4.02
1960 2813 1.402259 TGCTGTGGTGGTTTGTAAACG 59.598 47.619 1.80 0.00 39.77 3.60
1961 2814 2.798145 GCTGCTGTGGTGGTTTGTAAAC 60.798 50.000 0.00 0.00 38.17 2.01
2003 2856 5.982465 TTTCATTTTGCACTTGGCTTAAC 57.018 34.783 0.00 0.00 45.15 2.01
2006 2859 4.516323 AGTTTTCATTTTGCACTTGGCTT 58.484 34.783 0.00 0.00 45.15 4.35
2009 2901 8.641499 TTACTAAGTTTTCATTTTGCACTTGG 57.359 30.769 0.00 0.00 33.47 3.61
2022 2914 7.384387 CCACCTCTGTGTACTTACTAAGTTTTC 59.616 40.741 6.77 0.56 38.58 2.29
2023 2915 7.147602 ACCACCTCTGTGTACTTACTAAGTTTT 60.148 37.037 6.77 0.00 38.58 2.43
2025 2917 5.837438 ACCACCTCTGTGTACTTACTAAGTT 59.163 40.000 6.77 0.00 38.58 2.66
2027 2919 5.979288 ACCACCTCTGTGTACTTACTAAG 57.021 43.478 0.00 0.00 41.09 2.18
2028 2920 6.306199 TGTACCACCTCTGTGTACTTACTAA 58.694 40.000 0.00 0.00 41.09 2.24
2031 2923 5.184479 TCATGTACCACCTCTGTGTACTTAC 59.816 44.000 0.00 0.00 41.09 2.34
2033 2925 4.157246 TCATGTACCACCTCTGTGTACTT 58.843 43.478 0.00 0.00 41.09 2.24
2034 2926 3.774734 TCATGTACCACCTCTGTGTACT 58.225 45.455 0.00 0.00 41.09 2.73
2035 2927 4.737855 ATCATGTACCACCTCTGTGTAC 57.262 45.455 0.00 0.00 41.09 2.90
2036 2928 6.133356 TGATATCATGTACCACCTCTGTGTA 58.867 40.000 0.00 0.00 41.09 2.90
2037 2929 4.962362 TGATATCATGTACCACCTCTGTGT 59.038 41.667 0.00 0.00 41.09 3.72
2038 2930 5.535753 TGATATCATGTACCACCTCTGTG 57.464 43.478 0.00 0.00 42.39 3.66
2089 3009 9.733556 TGTTTTCTTAGCCATTGATTCTTACTA 57.266 29.630 0.00 0.00 0.00 1.82
2102 3023 4.953579 ACTTTTCACCTGTTTTCTTAGCCA 59.046 37.500 0.00 0.00 0.00 4.75
2133 3056 3.294750 ACGCGAGTCCCATGCTTA 58.705 55.556 15.93 0.00 44.19 3.09
2148 3071 1.883084 GAGGCGGCTGGTATCAACG 60.883 63.158 19.63 0.00 0.00 4.10
2150 3073 2.499205 CGAGGCGGCTGGTATCAA 59.501 61.111 19.63 0.00 0.00 2.57
2233 3226 8.843885 AACCTTAAGGCTTAGTACAACTTTAG 57.156 34.615 21.92 0.00 39.32 1.85
2238 3231 7.741027 AGAAAACCTTAAGGCTTAGTACAAC 57.259 36.000 21.92 2.13 39.32 3.32
2241 3234 9.800433 CTAGTAGAAAACCTTAAGGCTTAGTAC 57.200 37.037 21.92 17.82 39.32 2.73
2255 3248 5.351740 GCACCATCTTGACTAGTAGAAAACC 59.648 44.000 3.59 0.00 0.00 3.27
2264 3257 3.739519 GCTAGGTGCACCATCTTGACTAG 60.740 52.174 36.39 25.08 42.31 2.57
2265 3258 2.168521 GCTAGGTGCACCATCTTGACTA 59.831 50.000 36.39 16.74 42.31 2.59
2266 3259 1.065854 GCTAGGTGCACCATCTTGACT 60.066 52.381 36.39 16.49 42.31 3.41
2275 3268 0.389757 GCTAGGTAGCTAGGTGCACC 59.610 60.000 29.22 29.22 45.62 5.01
2285 3278 2.757155 GCGGCTGCTAGCTAGGTAGC 62.757 65.000 36.03 36.03 44.96 3.58
2290 3283 0.740868 TTTGTGCGGCTGCTAGCTAG 60.741 55.000 20.27 16.84 41.99 3.42
2397 3454 8.470002 ACTGCTTTCTTCTATTGTTTCACTTTT 58.530 29.630 0.00 0.00 0.00 2.27
2416 3473 2.065899 TGTTTGCCACCTACTGCTTT 57.934 45.000 0.00 0.00 0.00 3.51
2434 3497 2.485124 GGATCTGCCATGAGACTCCTTG 60.485 54.545 0.00 0.00 36.34 3.61
2491 3577 0.321298 TTGGCGTTAGGAACAGAGGC 60.321 55.000 0.00 0.00 0.00 4.70
2503 3589 0.800300 CGTGCACAAGTTTTGGCGTT 60.800 50.000 18.64 0.00 34.12 4.84
2504 3590 1.226547 CGTGCACAAGTTTTGGCGT 60.227 52.632 18.64 0.00 34.12 5.68
2706 5300 0.387367 CGCCGGATTCTGTAGGATCG 60.387 60.000 5.05 0.00 0.00 3.69
2781 5379 7.441017 TCTGTTTTCAACCCCAATTAAAGATG 58.559 34.615 0.00 0.00 0.00 2.90
2813 5427 8.463930 ACTAAATCAGATCAACACCTTCAAAA 57.536 30.769 0.00 0.00 0.00 2.44
2832 5446 8.949953 CGAACACGTCAAAATTACAAACTAAAT 58.050 29.630 0.00 0.00 0.00 1.40
2833 5447 7.044836 GCGAACACGTCAAAATTACAAACTAAA 60.045 33.333 0.00 0.00 0.00 1.85
2834 5448 6.411492 GCGAACACGTCAAAATTACAAACTAA 59.589 34.615 0.00 0.00 0.00 2.24
2835 5449 5.902981 GCGAACACGTCAAAATTACAAACTA 59.097 36.000 0.00 0.00 0.00 2.24
2836 5450 4.731480 GCGAACACGTCAAAATTACAAACT 59.269 37.500 0.00 0.00 0.00 2.66
2837 5451 4.496183 TGCGAACACGTCAAAATTACAAAC 59.504 37.500 0.00 0.00 0.00 2.93
2838 5452 4.659088 TGCGAACACGTCAAAATTACAAA 58.341 34.783 0.00 0.00 0.00 2.83
2839 5453 4.274421 TGCGAACACGTCAAAATTACAA 57.726 36.364 0.00 0.00 0.00 2.41
2840 5454 3.303461 CCTGCGAACACGTCAAAATTACA 60.303 43.478 0.00 0.00 0.00 2.41
2841 5455 3.223157 CCTGCGAACACGTCAAAATTAC 58.777 45.455 0.00 0.00 0.00 1.89
2842 5456 2.224549 CCCTGCGAACACGTCAAAATTA 59.775 45.455 0.00 0.00 0.00 1.40
2843 5457 1.001815 CCCTGCGAACACGTCAAAATT 60.002 47.619 0.00 0.00 0.00 1.82
2851 5476 3.726517 CAAGGCCCTGCGAACACG 61.727 66.667 0.00 0.00 0.00 4.49
2940 5565 0.030908 CGGTAGTCGAAGAGGATGGC 59.969 60.000 0.00 0.00 42.43 4.40
3028 5653 1.372582 CAGTCCGTTCATCACCATGG 58.627 55.000 11.19 11.19 0.00 3.66
3556 7652 4.263860 GGAGGTAGTACGGAGGATTCCTAT 60.264 50.000 4.86 0.00 41.67 2.57
3571 7667 7.447545 GGATTTGTAAACTGAAAAGGAGGTAGT 59.552 37.037 0.00 0.00 0.00 2.73
3572 7668 7.665974 AGGATTTGTAAACTGAAAAGGAGGTAG 59.334 37.037 0.00 0.00 0.00 3.18
3574 7670 6.265422 CAGGATTTGTAAACTGAAAAGGAGGT 59.735 38.462 0.00 0.00 32.86 3.85
3576 7672 6.152379 GCAGGATTTGTAAACTGAAAAGGAG 58.848 40.000 0.00 0.00 32.86 3.69
3577 7673 5.278266 CGCAGGATTTGTAAACTGAAAAGGA 60.278 40.000 0.00 0.00 32.86 3.36
3578 7674 4.917415 CGCAGGATTTGTAAACTGAAAAGG 59.083 41.667 0.00 0.00 32.86 3.11
3579 7675 4.382754 GCGCAGGATTTGTAAACTGAAAAG 59.617 41.667 0.30 0.00 32.86 2.27
3580 7676 4.295051 GCGCAGGATTTGTAAACTGAAAA 58.705 39.130 0.30 0.00 32.86 2.29
3581 7677 3.608241 CGCGCAGGATTTGTAAACTGAAA 60.608 43.478 8.75 0.00 32.86 2.69
3582 7678 2.095969 CGCGCAGGATTTGTAAACTGAA 60.096 45.455 8.75 0.00 32.86 3.02
3583 7679 1.463056 CGCGCAGGATTTGTAAACTGA 59.537 47.619 8.75 0.00 32.86 3.41
3584 7680 1.196808 ACGCGCAGGATTTGTAAACTG 59.803 47.619 5.73 0.00 0.00 3.16
3585 7681 1.519408 ACGCGCAGGATTTGTAAACT 58.481 45.000 5.73 0.00 0.00 2.66
3586 7682 3.668596 ATACGCGCAGGATTTGTAAAC 57.331 42.857 5.73 0.00 0.00 2.01
3587 7683 7.490079 CCTATATATACGCGCAGGATTTGTAAA 59.510 37.037 5.73 0.00 0.00 2.01
3588 7684 6.976349 CCTATATATACGCGCAGGATTTGTAA 59.024 38.462 5.73 0.00 0.00 2.41
3589 7685 6.095860 ACCTATATATACGCGCAGGATTTGTA 59.904 38.462 5.73 0.00 0.00 2.41
3590 7686 5.105473 ACCTATATATACGCGCAGGATTTGT 60.105 40.000 5.73 0.00 0.00 2.83
3591 7687 5.348986 ACCTATATATACGCGCAGGATTTG 58.651 41.667 5.73 0.00 0.00 2.32
3592 7688 5.593679 ACCTATATATACGCGCAGGATTT 57.406 39.130 5.73 0.34 0.00 2.17
3593 7689 5.348986 CAACCTATATATACGCGCAGGATT 58.651 41.667 5.73 0.00 0.00 3.01
3594 7690 4.736759 GCAACCTATATATACGCGCAGGAT 60.737 45.833 5.73 5.10 0.00 3.24
3595 7691 3.428452 GCAACCTATATATACGCGCAGGA 60.428 47.826 5.73 0.00 0.00 3.86
3596 7692 2.858344 GCAACCTATATATACGCGCAGG 59.142 50.000 5.73 6.39 0.00 4.85
3597 7693 2.858344 GGCAACCTATATATACGCGCAG 59.142 50.000 5.73 2.42 0.00 5.18
3598 7694 2.231721 TGGCAACCTATATATACGCGCA 59.768 45.455 5.73 0.00 0.00 6.09
3599 7695 2.883574 TGGCAACCTATATATACGCGC 58.116 47.619 5.73 0.00 0.00 6.86
3600 7696 6.417191 AAATTGGCAACCTATATATACGCG 57.583 37.500 3.53 3.53 0.00 6.01
3601 7697 9.931210 GATAAAATTGGCAACCTATATATACGC 57.069 33.333 0.00 0.00 0.00 4.42
3605 7701 9.255029 GGGTGATAAAATTGGCAACCTATATAT 57.745 33.333 0.00 0.00 35.26 0.86
3606 7702 8.452868 AGGGTGATAAAATTGGCAACCTATATA 58.547 33.333 0.00 0.00 46.13 0.86
3607 7703 7.305246 AGGGTGATAAAATTGGCAACCTATAT 58.695 34.615 0.00 0.00 46.13 0.86
3608 7704 6.678547 AGGGTGATAAAATTGGCAACCTATA 58.321 36.000 0.00 0.00 46.13 1.31
3609 7705 5.528337 AGGGTGATAAAATTGGCAACCTAT 58.472 37.500 0.00 0.00 46.13 2.57
3610 7706 4.941713 AGGGTGATAAAATTGGCAACCTA 58.058 39.130 0.00 0.00 46.13 3.08
3611 7707 3.790126 AGGGTGATAAAATTGGCAACCT 58.210 40.909 0.00 0.00 43.35 3.50
3612 7708 5.046950 TGTTAGGGTGATAAAATTGGCAACC 60.047 40.000 0.00 0.00 38.39 3.77
3613 7709 6.031751 TGTTAGGGTGATAAAATTGGCAAC 57.968 37.500 0.00 0.00 0.00 4.17
3614 7710 6.865834 ATGTTAGGGTGATAAAATTGGCAA 57.134 33.333 0.68 0.68 0.00 4.52
3615 7711 7.962995 TTATGTTAGGGTGATAAAATTGGCA 57.037 32.000 0.00 0.00 0.00 4.92
3616 7712 8.474831 AGTTTATGTTAGGGTGATAAAATTGGC 58.525 33.333 0.00 0.00 0.00 4.52
3657 7753 9.211485 CGGAGTTTCTACTTTCAAAAGGTATAA 57.789 33.333 7.37 0.00 40.31 0.98
3658 7754 8.587608 TCGGAGTTTCTACTTTCAAAAGGTATA 58.412 33.333 7.37 0.00 40.31 1.47
3659 7755 7.447594 TCGGAGTTTCTACTTTCAAAAGGTAT 58.552 34.615 7.37 0.00 40.31 2.73
3660 7756 6.819284 TCGGAGTTTCTACTTTCAAAAGGTA 58.181 36.000 7.37 0.00 40.31 3.08
3661 7757 5.677567 TCGGAGTTTCTACTTTCAAAAGGT 58.322 37.500 7.37 0.00 40.31 3.50
3662 7758 6.613755 TTCGGAGTTTCTACTTTCAAAAGG 57.386 37.500 7.37 0.00 40.31 3.11
3663 7759 9.516314 AAATTTCGGAGTTTCTACTTTCAAAAG 57.484 29.630 0.97 0.97 41.73 2.27
3667 7763 9.280174 ACATAAATTTCGGAGTTTCTACTTTCA 57.720 29.630 0.00 0.00 33.84 2.69
3669 7765 9.893305 CAACATAAATTTCGGAGTTTCTACTTT 57.107 29.630 0.00 0.00 33.84 2.66
3670 7766 8.512138 CCAACATAAATTTCGGAGTTTCTACTT 58.488 33.333 0.00 0.00 33.84 2.24
3671 7767 7.664318 ACCAACATAAATTTCGGAGTTTCTACT 59.336 33.333 0.00 0.00 37.31 2.57
3672 7768 7.813645 ACCAACATAAATTTCGGAGTTTCTAC 58.186 34.615 0.00 0.00 0.00 2.59
3673 7769 7.989416 ACCAACATAAATTTCGGAGTTTCTA 57.011 32.000 0.00 0.00 0.00 2.10
3674 7770 6.894339 ACCAACATAAATTTCGGAGTTTCT 57.106 33.333 0.00 0.00 0.00 2.52
3717 7813 9.418045 CGTCAATTTGACCAACCTAATAAAAAT 57.582 29.630 20.87 0.00 44.20 1.82
3718 7814 8.630917 TCGTCAATTTGACCAACCTAATAAAAA 58.369 29.630 20.87 0.00 44.20 1.94
3719 7815 8.077386 GTCGTCAATTTGACCAACCTAATAAAA 58.923 33.333 20.87 0.00 44.20 1.52
3720 7816 7.586747 GTCGTCAATTTGACCAACCTAATAAA 58.413 34.615 20.87 0.00 44.20 1.40
3721 7817 7.136289 GTCGTCAATTTGACCAACCTAATAA 57.864 36.000 20.87 0.00 44.20 1.40
3722 7818 6.730960 GTCGTCAATTTGACCAACCTAATA 57.269 37.500 20.87 0.00 44.20 0.98
3723 7819 5.622770 GTCGTCAATTTGACCAACCTAAT 57.377 39.130 20.87 0.00 44.20 1.73
3732 7828 4.189639 ACTCCTAGGTCGTCAATTTGAC 57.810 45.455 17.76 17.76 43.65 3.18
3733 7829 4.142534 CGTACTCCTAGGTCGTCAATTTGA 60.143 45.833 9.08 0.00 0.00 2.69
3734 7830 4.103357 CGTACTCCTAGGTCGTCAATTTG 58.897 47.826 9.08 0.00 0.00 2.32
3735 7831 3.428589 GCGTACTCCTAGGTCGTCAATTT 60.429 47.826 9.08 0.00 0.00 1.82
3736 7832 2.098770 GCGTACTCCTAGGTCGTCAATT 59.901 50.000 9.08 0.00 0.00 2.32
3737 7833 1.674962 GCGTACTCCTAGGTCGTCAAT 59.325 52.381 9.08 0.00 0.00 2.57
3738 7834 1.089920 GCGTACTCCTAGGTCGTCAA 58.910 55.000 9.08 0.00 0.00 3.18
3739 7835 1.086067 CGCGTACTCCTAGGTCGTCA 61.086 60.000 9.08 0.00 0.00 4.35
3740 7836 1.086634 ACGCGTACTCCTAGGTCGTC 61.087 60.000 11.67 5.93 0.00 4.20
3741 7837 0.175760 TACGCGTACTCCTAGGTCGT 59.824 55.000 16.41 9.96 0.00 4.34
3742 7838 0.579156 GTACGCGTACTCCTAGGTCG 59.421 60.000 35.66 10.72 33.45 4.79
3743 7839 0.579156 CGTACGCGTACTCCTAGGTC 59.421 60.000 37.74 15.95 34.04 3.85
3744 7840 1.432270 GCGTACGCGTACTCCTAGGT 61.432 60.000 37.74 5.81 40.81 3.08
3745 7841 1.278038 GCGTACGCGTACTCCTAGG 59.722 63.158 37.74 25.54 40.81 3.02
3746 7842 1.278038 GGCGTACGCGTACTCCTAG 59.722 63.158 38.23 26.77 43.06 3.02
3747 7843 2.180204 GGGCGTACGCGTACTCCTA 61.180 63.158 41.08 15.11 40.01 2.94
3748 7844 3.512516 GGGCGTACGCGTACTCCT 61.513 66.667 41.08 13.53 40.01 3.69
3749 7845 3.512516 AGGGCGTACGCGTACTCC 61.513 66.667 38.08 38.08 43.06 3.85
3750 7846 1.705337 TACAGGGCGTACGCGTACTC 61.705 60.000 37.74 32.54 43.06 2.59
3751 7847 1.305219 TTACAGGGCGTACGCGTACT 61.305 55.000 37.74 25.47 43.06 2.73
3752 7848 0.455972 TTTACAGGGCGTACGCGTAC 60.456 55.000 33.94 33.94 43.06 3.67
3753 7849 0.455972 GTTTACAGGGCGTACGCGTA 60.456 55.000 31.78 24.50 43.06 4.42
3754 7850 1.734117 GTTTACAGGGCGTACGCGT 60.734 57.895 31.78 25.50 43.06 6.01
3755 7851 2.447070 GGTTTACAGGGCGTACGCG 61.447 63.158 31.78 21.33 43.06 6.01
3756 7852 2.447070 CGGTTTACAGGGCGTACGC 61.447 63.158 31.54 31.54 41.06 4.42
3757 7853 0.799534 CTCGGTTTACAGGGCGTACG 60.800 60.000 11.84 11.84 0.00 3.67
3758 7854 0.527565 TCTCGGTTTACAGGGCGTAC 59.472 55.000 0.00 0.00 0.00 3.67
3759 7855 0.813184 CTCTCGGTTTACAGGGCGTA 59.187 55.000 0.00 0.00 0.00 4.42
3760 7856 0.896940 TCTCTCGGTTTACAGGGCGT 60.897 55.000 0.00 0.00 0.00 5.68
3761 7857 0.179134 CTCTCTCGGTTTACAGGGCG 60.179 60.000 0.00 0.00 0.00 6.13
3762 7858 1.135333 CTCTCTCTCGGTTTACAGGGC 59.865 57.143 0.00 0.00 0.00 5.19
3763 7859 1.751924 CCTCTCTCTCGGTTTACAGGG 59.248 57.143 0.00 0.00 0.00 4.45
3764 7860 2.448453 ACCTCTCTCTCGGTTTACAGG 58.552 52.381 0.00 0.00 0.00 4.00
3765 7861 4.263435 ACTACCTCTCTCTCGGTTTACAG 58.737 47.826 0.00 0.00 34.76 2.74
3766 7862 4.298103 ACTACCTCTCTCTCGGTTTACA 57.702 45.455 0.00 0.00 34.76 2.41
3767 7863 5.427378 ACTACTACCTCTCTCTCGGTTTAC 58.573 45.833 0.00 0.00 34.76 2.01
3768 7864 5.690464 ACTACTACCTCTCTCTCGGTTTA 57.310 43.478 0.00 0.00 34.76 2.01
3769 7865 4.573021 ACTACTACCTCTCTCTCGGTTT 57.427 45.455 0.00 0.00 34.76 3.27
3770 7866 4.443315 GCTACTACTACCTCTCTCTCGGTT 60.443 50.000 0.00 0.00 34.76 4.44
3771 7867 3.070015 GCTACTACTACCTCTCTCTCGGT 59.930 52.174 0.00 0.00 37.31 4.69
3772 7868 3.069872 TGCTACTACTACCTCTCTCTCGG 59.930 52.174 0.00 0.00 0.00 4.63
3773 7869 4.053295 GTGCTACTACTACCTCTCTCTCG 58.947 52.174 0.00 0.00 0.00 4.04
3774 7870 5.054477 CAGTGCTACTACTACCTCTCTCTC 58.946 50.000 0.00 0.00 0.00 3.20
3775 7871 4.685030 GCAGTGCTACTACTACCTCTCTCT 60.685 50.000 8.18 0.00 0.00 3.10
3776 7872 3.562557 GCAGTGCTACTACTACCTCTCTC 59.437 52.174 8.18 0.00 0.00 3.20
3777 7873 3.201266 AGCAGTGCTACTACTACCTCTCT 59.799 47.826 18.11 0.00 36.99 3.10
3778 7874 3.547746 AGCAGTGCTACTACTACCTCTC 58.452 50.000 18.11 0.00 36.99 3.20
3779 7875 3.655615 AGCAGTGCTACTACTACCTCT 57.344 47.619 18.11 0.00 36.99 3.69
3780 7876 4.883006 AGTAAGCAGTGCTACTACTACCTC 59.117 45.833 22.40 1.05 38.25 3.85
3781 7877 4.857679 AGTAAGCAGTGCTACTACTACCT 58.142 43.478 22.40 6.56 38.25 3.08
3782 7878 5.125097 TGAAGTAAGCAGTGCTACTACTACC 59.875 44.000 23.47 18.97 38.25 3.18
3783 7879 6.192234 TGAAGTAAGCAGTGCTACTACTAC 57.808 41.667 23.47 18.73 38.25 2.73
3784 7880 8.404000 GTTATGAAGTAAGCAGTGCTACTACTA 58.596 37.037 23.47 13.39 38.25 1.82
3785 7881 5.923733 ATGAAGTAAGCAGTGCTACTACT 57.076 39.130 20.09 19.69 38.25 2.57
3786 7882 6.476053 GGTTATGAAGTAAGCAGTGCTACTAC 59.524 42.308 20.09 17.69 38.25 2.73
3787 7883 6.153851 TGGTTATGAAGTAAGCAGTGCTACTA 59.846 38.462 20.09 5.09 43.71 1.82
3822 7918 4.932799 TGGGCGGTCACATATTTATTATCG 59.067 41.667 0.00 0.00 0.00 2.92
3844 7940 1.236616 TTTCAGGCTCGTGGTGCATG 61.237 55.000 0.00 0.00 42.62 4.06
3940 8036 2.587522 GAAGAGGCCAAAGGTTGAAGT 58.412 47.619 5.01 0.00 0.00 3.01
3973 8072 2.817844 GTTAAACCTAGGTTGGCCAGTG 59.182 50.000 27.75 0.00 38.47 3.66
3974 8073 2.224942 GGTTAAACCTAGGTTGGCCAGT 60.225 50.000 27.75 13.31 38.47 4.00
3976 8075 1.271488 CGGTTAAACCTAGGTTGGCCA 60.271 52.381 27.75 0.00 38.47 5.36
3984 8083 2.418334 GGAGGCAGTCGGTTAAACCTAG 60.418 54.545 0.00 0.00 35.66 3.02
4027 8126 1.221021 GGGAAGATGTCGTGGGGAC 59.779 63.158 0.00 0.00 46.27 4.46
4034 8134 2.511600 GGCGGTGGGAAGATGTCG 60.512 66.667 0.00 0.00 0.00 4.35
4038 8138 2.124151 GCATGGCGGTGGGAAGAT 60.124 61.111 0.00 0.00 0.00 2.40
4308 11922 8.234546 TCCTTGAAAATAGAACGTTTAGCAATC 58.765 33.333 0.46 0.00 0.00 2.67
4310 11924 7.357303 GTCCTTGAAAATAGAACGTTTAGCAA 58.643 34.615 0.46 0.44 0.00 3.91
4329 11943 4.421058 TGAGTCATTCGATAACGTCCTTG 58.579 43.478 0.00 0.00 40.69 3.61
4331 11945 4.713824 TTGAGTCATTCGATAACGTCCT 57.286 40.909 0.00 0.00 40.69 3.85
4434 12056 2.278026 TGTCTGCTAGTACATGCACG 57.722 50.000 8.42 6.14 35.20 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.