Multiple sequence alignment - TraesCS2D01G511200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G511200 chr2D 100.000 3144 0 0 1 3144 602713617 602710474 0.000000e+00 5806.0
1 TraesCS2D01G511200 chr2D 89.177 1580 105 34 830 2370 601982856 601984408 0.000000e+00 1910.0
2 TraesCS2D01G511200 chr2D 90.614 277 24 2 2701 2975 399206043 399205767 1.780000e-97 366.0
3 TraesCS2D01G511200 chr2D 100.000 54 0 0 1439 1492 60078912 60078859 2.000000e-17 100.0
4 TraesCS2D01G511200 chr2D 80.952 126 20 3 1379 1501 60015809 60015685 2.580000e-16 97.1
5 TraesCS2D01G511200 chr2D 98.148 54 1 0 1439 1492 60064935 60064882 9.280000e-16 95.3
6 TraesCS2D01G511200 chr2D 85.965 57 8 0 1722 1778 643435718 643435774 9.420000e-06 62.1
7 TraesCS2D01G511200 chr2B 92.598 1932 106 21 843 2751 733078104 733076187 0.000000e+00 2741.0
8 TraesCS2D01G511200 chr2B 86.667 525 40 8 1 507 733081187 733080675 3.540000e-154 555.0
9 TraesCS2D01G511200 chr2B 92.248 258 18 2 2718 2974 480109368 480109624 6.410000e-97 364.0
10 TraesCS2D01G511200 chr2B 88.737 293 29 1 491 783 733078674 733078386 3.860000e-94 355.0
11 TraesCS2D01G511200 chr2B 88.235 51 6 0 1728 1778 793505641 793505591 9.420000e-06 62.1
12 TraesCS2D01G511200 chr2A 94.428 1741 75 11 830 2560 735351461 735349733 0.000000e+00 2658.0
13 TraesCS2D01G511200 chr2A 88.944 805 55 10 1 783 735352541 735351749 0.000000e+00 963.0
14 TraesCS2D01G511200 chr2A 91.829 257 19 1 2719 2973 698136450 698136194 1.070000e-94 357.0
15 TraesCS2D01G511200 chr2A 92.216 167 12 1 2557 2723 735345145 735344980 5.240000e-58 235.0
16 TraesCS2D01G511200 chr2A 85.149 101 15 0 1392 1492 60068979 60068879 1.540000e-18 104.0
17 TraesCS2D01G511200 chr2A 98.148 54 1 0 1439 1492 60078988 60078935 9.280000e-16 95.3
18 TraesCS2D01G511200 chr2A 77.622 143 32 0 2575 2717 735308703 735308561 1.550000e-13 87.9
19 TraesCS2D01G511200 chr2A 88.235 51 6 0 1728 1778 768266463 768266413 9.420000e-06 62.1
20 TraesCS2D01G511200 chr6B 93.050 259 16 2 2717 2974 438954858 438954601 8.230000e-101 377.0
21 TraesCS2D01G511200 chr6B 90.184 163 14 2 2970 3131 251104332 251104493 8.830000e-51 211.0
22 TraesCS2D01G511200 chr6B 85.294 68 10 0 2648 2715 158196043 158196110 1.560000e-08 71.3
23 TraesCS2D01G511200 chr6B 90.385 52 5 0 1167 1218 585902085 585902136 5.630000e-08 69.4
24 TraesCS2D01G511200 chr3D 93.023 258 16 2 2719 2975 604878257 604878001 2.960000e-100 375.0
25 TraesCS2D01G511200 chr3D 91.045 268 20 4 2708 2974 275624429 275624165 2.980000e-95 359.0
26 TraesCS2D01G511200 chr3D 91.829 257 19 2 2719 2974 32159182 32158927 1.070000e-94 357.0
27 TraesCS2D01G511200 chr3D 85.714 56 7 1 1728 1783 532205230 532205176 1.220000e-04 58.4
28 TraesCS2D01G511200 chr7A 92.636 258 17 2 2719 2975 46280788 46281044 1.380000e-98 370.0
29 TraesCS2D01G511200 chr7A 90.854 164 15 0 2970 3133 46281082 46281245 1.470000e-53 220.0
30 TraesCS2D01G511200 chr7A 97.222 36 1 0 1182 1217 152507321 152507356 9.420000e-06 62.1
31 TraesCS2D01G511200 chr7D 91.860 258 19 2 2718 2974 87185877 87185621 2.980000e-95 359.0
32 TraesCS2D01G511200 chr7D 90.566 159 13 2 2976 3133 7871594 7871437 3.180000e-50 209.0
33 TraesCS2D01G511200 chr7D 94.444 36 2 0 1182 1217 151825014 151825049 4.380000e-04 56.5
34 TraesCS2D01G511200 chr7D 94.444 36 2 0 1182 1217 151931195 151931230 4.380000e-04 56.5
35 TraesCS2D01G511200 chr5D 91.720 157 11 1 2977 3133 289061438 289061592 1.900000e-52 217.0
36 TraesCS2D01G511200 chr5A 91.720 157 12 1 2976 3131 588559035 588558879 1.900000e-52 217.0
37 TraesCS2D01G511200 chr4B 90.303 165 14 2 2970 3133 288994626 288994789 6.830000e-52 215.0
38 TraesCS2D01G511200 chr4D 90.683 161 14 1 2973 3133 121350728 121350569 2.460000e-51 213.0
39 TraesCS2D01G511200 chr4A 90.062 161 14 1 2973 3133 709871224 709871066 1.140000e-49 207.0
40 TraesCS2D01G511200 chr3B 90.506 158 14 1 2976 3133 48982046 48981890 1.140000e-49 207.0
41 TraesCS2D01G511200 chr6D 71.959 592 122 37 1572 2147 90923952 90924515 1.970000e-27 134.0
42 TraesCS2D01G511200 chr6D 77.717 184 30 7 1301 1474 90922941 90923123 5.550000e-18 102.0
43 TraesCS2D01G511200 chr6D 88.136 59 7 0 1167 1225 392513445 392513503 1.560000e-08 71.3
44 TraesCS2D01G511200 chr3A 86.275 51 7 0 1728 1778 667494675 667494625 4.380000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G511200 chr2D 602710474 602713617 3143 True 5806.0 5806 100.000 1 3144 1 chr2D.!!$R5 3143
1 TraesCS2D01G511200 chr2D 601982856 601984408 1552 False 1910.0 1910 89.177 830 2370 1 chr2D.!!$F1 1540
2 TraesCS2D01G511200 chr2B 733076187 733081187 5000 True 1217.0 2741 89.334 1 2751 3 chr2B.!!$R2 2750
3 TraesCS2D01G511200 chr2A 735349733 735352541 2808 True 1810.5 2658 91.686 1 2560 2 chr2A.!!$R7 2559

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
517 2554 0.106719 AATAGGAATGGTGGCACCGG 60.107 55.0 30.14 0.0 42.58 5.28 F
1295 3600 0.037139 TAACCATTGACCCGTGGACG 60.037 55.0 0.00 0.0 38.86 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1561 3879 0.108186 CGCCCAGCTGTAGATCACAA 60.108 55.0 13.81 0.0 36.48 3.33 R
2715 5057 0.250989 CGGGCCCTTTTGGTAGTCAA 60.251 55.0 22.43 0.0 38.10 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 3.567579 AACCTGACCCACATGGCCG 62.568 63.158 0.00 0.00 37.83 6.13
63 64 0.892814 TGGCCGCATGTTGATTGTGA 60.893 50.000 0.00 0.00 0.00 3.58
64 65 0.457035 GGCCGCATGTTGATTGTGAT 59.543 50.000 0.00 0.00 0.00 3.06
74 75 7.799447 CGCATGTTGATTGTGATTTTTGAAATT 59.201 29.630 0.00 0.00 0.00 1.82
86 87 8.455682 GTGATTTTTGAAATTATGTCCCGAGTA 58.544 33.333 0.00 0.00 0.00 2.59
104 105 6.127168 CCCGAGTAGGAATGCCAATACATATA 60.127 42.308 0.00 0.00 45.00 0.86
224 243 3.618690 AGTGGCTGGTTCTCTATTGAC 57.381 47.619 0.00 0.00 0.00 3.18
231 250 6.070251 TGGCTGGTTCTCTATTGACTTTGATA 60.070 38.462 0.00 0.00 0.00 2.15
252 271 1.145945 TGGGACACCAATTAAGCCACA 59.854 47.619 0.00 0.00 45.87 4.17
272 291 3.118738 ACAGAGTTATTAGGTTGCTCCCG 60.119 47.826 0.00 0.00 36.75 5.14
312 331 4.152938 TCGTCTCTTAGTTCGTCGAATCAA 59.847 41.667 11.45 7.40 0.00 2.57
358 377 6.051074 TCAATGTTGGAGTATGTAGCAGATG 58.949 40.000 0.00 0.00 0.00 2.90
368 387 7.658982 GGAGTATGTAGCAGATGATGAATGAAA 59.341 37.037 0.00 0.00 0.00 2.69
369 388 8.969260 AGTATGTAGCAGATGATGAATGAAAA 57.031 30.769 0.00 0.00 0.00 2.29
413 434 8.616942 CCTTATCGTAGATATGGTCTCTATGTG 58.383 40.741 11.59 0.00 45.12 3.21
414 435 5.881777 TCGTAGATATGGTCTCTATGTGC 57.118 43.478 0.00 0.00 38.42 4.57
474 495 3.946558 AGAGAGACGTATAAGTGTCACCC 59.053 47.826 16.23 6.76 36.94 4.61
478 499 4.342359 AGACGTATAAGTGTCACCCTTCT 58.658 43.478 0.00 0.00 37.58 2.85
480 501 5.245526 AGACGTATAAGTGTCACCCTTCTTT 59.754 40.000 0.00 0.00 37.58 2.52
481 502 5.861727 ACGTATAAGTGTCACCCTTCTTTT 58.138 37.500 0.00 0.00 0.00 2.27
517 2554 0.106719 AATAGGAATGGTGGCACCGG 60.107 55.000 30.14 0.00 42.58 5.28
520 2557 2.275418 GAATGGTGGCACCGGGAT 59.725 61.111 30.14 16.57 42.58 3.85
586 2623 8.851541 TGTTTAAGGTTCATATTACGTTCCTT 57.148 30.769 0.00 0.00 37.53 3.36
597 2635 8.622157 TCATATTACGTTCCTTGTTTTTGACAA 58.378 29.630 0.00 0.00 45.70 3.18
598 2636 9.405587 CATATTACGTTCCTTGTTTTTGACAAT 57.594 29.630 0.00 0.00 46.58 2.71
599 2637 7.692908 ATTACGTTCCTTGTTTTTGACAATG 57.307 32.000 0.00 0.00 46.58 2.82
600 2638 3.862845 ACGTTCCTTGTTTTTGACAATGC 59.137 39.130 0.00 0.00 46.58 3.56
623 2661 7.089538 TGCATGGTTGTCTTGTGTATAAAATG 58.910 34.615 0.00 0.00 0.00 2.32
676 2714 5.989168 TGTATCATAGCGATTTGTTGGGTAG 59.011 40.000 0.00 0.00 35.39 3.18
685 2723 4.568956 GATTTGTTGGGTAGCAGCAAATT 58.431 39.130 16.13 6.16 41.30 1.82
695 2733 3.637998 AGCAGCAAATTCACACTGAAG 57.362 42.857 0.00 0.00 40.05 3.02
704 2742 5.779529 AATTCACACTGAAGCAAGTTCAT 57.220 34.783 0.00 0.00 44.44 2.57
721 2759 7.572353 GCAAGTTCATTCTTATTCGTTGGTACA 60.572 37.037 0.00 0.00 0.00 2.90
755 2797 9.309516 ACATTATGATGCATTTTAAAGCAAGAG 57.690 29.630 0.00 0.00 44.88 2.85
827 2981 0.252696 TATATCCCGGGCCTCTGCAT 60.253 55.000 18.49 4.44 40.13 3.96
828 2982 1.557269 ATATCCCGGGCCTCTGCATC 61.557 60.000 18.49 0.00 40.13 3.91
833 3116 2.509916 GGGCCTCTGCATCTGGAG 59.490 66.667 0.84 0.00 40.13 3.86
860 3146 2.202623 GGTACAGCGAGTCAGCGG 60.203 66.667 0.00 5.80 43.00 5.52
949 3238 7.535997 CACACACTACACACTACACTACATAT 58.464 38.462 0.00 0.00 0.00 1.78
950 3239 8.671028 CACACACTACACACTACACTACATATA 58.329 37.037 0.00 0.00 0.00 0.86
957 3246 8.803397 ACACACTACACTACATATACTCAAGA 57.197 34.615 0.00 0.00 0.00 3.02
958 3247 9.409918 ACACACTACACTACATATACTCAAGAT 57.590 33.333 0.00 0.00 0.00 2.40
1035 3340 1.262640 ATGCCTTCGGTTCCTACGGT 61.263 55.000 0.00 0.00 0.00 4.83
1060 3365 0.617935 GGCCTTGCTCTTCTTCTCCT 59.382 55.000 0.00 0.00 0.00 3.69
1065 3370 1.142965 GCTCTTCTTCTCCTCGGCC 59.857 63.158 0.00 0.00 0.00 6.13
1295 3600 0.037139 TAACCATTGACCCGTGGACG 60.037 55.000 0.00 0.00 38.86 4.79
1314 3619 1.532078 TGTACAGGGCTGTGACGGA 60.532 57.895 0.00 0.00 44.63 4.69
1317 3622 0.613572 TACAGGGCTGTGACGGATCA 60.614 55.000 0.00 0.00 44.63 2.92
1500 3805 4.819082 GCGGTAAGCACCATACGA 57.181 55.556 0.00 0.00 46.14 3.43
1526 3838 4.996122 ACAAGCTTCAGATCAGAACTCAAG 59.004 41.667 0.00 0.00 0.00 3.02
1527 3839 4.888326 AGCTTCAGATCAGAACTCAAGT 57.112 40.909 0.00 0.00 0.00 3.16
1531 3843 6.035843 GCTTCAGATCAGAACTCAAGTCTAG 58.964 44.000 0.00 0.00 0.00 2.43
1545 3861 6.370166 ACTCAAGTCTAGTTGCTTAATTCTGC 59.630 38.462 0.00 0.00 0.00 4.26
1557 3875 4.212214 GCTTAATTCTGCTATGAACTCCGG 59.788 45.833 0.00 0.00 0.00 5.14
1559 3877 3.914426 ATTCTGCTATGAACTCCGGTT 57.086 42.857 0.00 0.00 38.52 4.44
1560 3878 2.672961 TCTGCTATGAACTCCGGTTG 57.327 50.000 0.00 0.00 35.58 3.77
1561 3879 1.899814 TCTGCTATGAACTCCGGTTGT 59.100 47.619 0.00 0.00 35.58 3.32
1562 3880 2.301870 TCTGCTATGAACTCCGGTTGTT 59.698 45.455 13.63 13.63 35.58 2.83
1563 3881 2.416547 CTGCTATGAACTCCGGTTGTTG 59.583 50.000 17.42 6.94 35.58 3.33
1564 3882 2.224426 TGCTATGAACTCCGGTTGTTGT 60.224 45.455 17.42 10.07 35.58 3.32
1565 3883 2.159627 GCTATGAACTCCGGTTGTTGTG 59.840 50.000 17.42 7.94 35.58 3.33
1566 3884 2.631160 ATGAACTCCGGTTGTTGTGA 57.369 45.000 17.42 5.00 35.58 3.58
1567 3885 2.631160 TGAACTCCGGTTGTTGTGAT 57.369 45.000 17.42 0.00 35.58 3.06
1570 3888 3.322541 TGAACTCCGGTTGTTGTGATCTA 59.677 43.478 17.42 0.00 35.58 1.98
1637 3955 3.733960 CGACGACGAGCCAGGACA 61.734 66.667 0.00 0.00 42.66 4.02
1639 3957 2.910479 ACGACGAGCCAGGACACA 60.910 61.111 0.00 0.00 0.00 3.72
1804 4122 0.385723 GCCTCTATAACGAGACCGCG 60.386 60.000 0.00 0.00 39.95 6.46
2147 4465 1.271379 GCAGGAAGGCCAACTGAAGTA 60.271 52.381 21.15 0.00 36.29 2.24
2197 4521 8.212995 ACTATGGTGATCATGTCAATTGTCATA 58.787 33.333 16.19 7.34 38.90 2.15
2217 4541 5.295045 TCATATTGTGTGTGTGATGATGAGC 59.705 40.000 0.00 0.00 0.00 4.26
2405 4745 1.939934 TGTGTGCTGAAAGTTCGAAGG 59.060 47.619 0.00 0.00 35.30 3.46
2594 4935 2.122783 TTAGTACCACATTGCCTGGC 57.877 50.000 12.87 12.87 31.13 4.85
2597 4938 1.065418 AGTACCACATTGCCTGGCTAC 60.065 52.381 21.03 11.66 31.13 3.58
2630 4971 2.735151 GGTGGGGAAGGATACAAAAGG 58.265 52.381 0.00 0.00 41.41 3.11
2644 4985 2.108250 ACAAAAGGAGGAGCAAGCCTTA 59.892 45.455 0.00 0.00 40.97 2.69
2645 4986 2.489722 CAAAAGGAGGAGCAAGCCTTAC 59.510 50.000 0.00 0.00 40.97 2.34
2646 4987 1.662686 AAGGAGGAGCAAGCCTTACT 58.337 50.000 0.00 0.00 40.10 2.24
2647 4988 1.662686 AGGAGGAGCAAGCCTTACTT 58.337 50.000 0.00 0.00 38.73 2.24
2657 4999 5.181748 AGCAAGCCTTACTTCAAGTCATAG 58.818 41.667 0.00 0.00 36.04 2.23
2659 5001 4.143986 AGCCTTACTTCAAGTCATAGCC 57.856 45.455 0.00 0.00 31.77 3.93
2665 5007 6.351371 CCTTACTTCAAGTCATAGCCTTCTCA 60.351 42.308 0.00 0.00 31.77 3.27
2667 5009 3.533606 TCAAGTCATAGCCTTCTCAGC 57.466 47.619 0.00 0.00 0.00 4.26
2672 5014 3.118445 AGTCATAGCCTTCTCAGCCTTTC 60.118 47.826 0.00 0.00 0.00 2.62
2674 5016 1.557099 TAGCCTTCTCAGCCTTTCGA 58.443 50.000 0.00 0.00 0.00 3.71
2677 5019 2.003196 CCTTCTCAGCCTTTCGACTC 57.997 55.000 0.00 0.00 0.00 3.36
2678 5020 1.273606 CCTTCTCAGCCTTTCGACTCA 59.726 52.381 0.00 0.00 0.00 3.41
2679 5021 2.289072 CCTTCTCAGCCTTTCGACTCAA 60.289 50.000 0.00 0.00 0.00 3.02
2685 5027 3.748048 TCAGCCTTTCGACTCAAATCAAG 59.252 43.478 0.00 0.00 0.00 3.02
2693 5035 7.545965 CCTTTCGACTCAAATCAAGTGTAGTAT 59.454 37.037 0.00 0.00 0.00 2.12
2696 5038 8.502105 TCGACTCAAATCAAGTGTAGTATCTA 57.498 34.615 0.00 0.00 0.00 1.98
2741 5083 3.601685 AAAAGGGCCCGTGCGTTG 61.602 61.111 18.44 0.00 38.85 4.10
2742 5084 4.887190 AAAGGGCCCGTGCGTTGT 62.887 61.111 18.44 0.00 38.85 3.32
2760 5102 4.966249 GTTGTAACGGGAGCAAAGAATAC 58.034 43.478 0.00 0.00 0.00 1.89
2761 5103 3.255725 TGTAACGGGAGCAAAGAATACG 58.744 45.455 0.00 0.00 0.00 3.06
2762 5104 1.734163 AACGGGAGCAAAGAATACGG 58.266 50.000 0.00 0.00 0.00 4.02
2763 5105 0.743345 ACGGGAGCAAAGAATACGGC 60.743 55.000 0.00 0.00 0.00 5.68
2764 5106 0.742990 CGGGAGCAAAGAATACGGCA 60.743 55.000 0.00 0.00 0.00 5.69
2765 5107 0.733150 GGGAGCAAAGAATACGGCAC 59.267 55.000 0.00 0.00 0.00 5.01
2766 5108 1.448985 GGAGCAAAGAATACGGCACA 58.551 50.000 0.00 0.00 0.00 4.57
2767 5109 1.130561 GGAGCAAAGAATACGGCACAC 59.869 52.381 0.00 0.00 0.00 3.82
2768 5110 2.076863 GAGCAAAGAATACGGCACACT 58.923 47.619 0.00 0.00 0.00 3.55
2769 5111 2.076863 AGCAAAGAATACGGCACACTC 58.923 47.619 0.00 0.00 0.00 3.51
2770 5112 2.076863 GCAAAGAATACGGCACACTCT 58.923 47.619 0.00 0.00 0.00 3.24
2771 5113 2.484264 GCAAAGAATACGGCACACTCTT 59.516 45.455 0.00 0.00 0.00 2.85
2772 5114 3.682858 GCAAAGAATACGGCACACTCTTA 59.317 43.478 0.00 0.00 0.00 2.10
2773 5115 4.153475 GCAAAGAATACGGCACACTCTTAA 59.847 41.667 0.00 0.00 0.00 1.85
2774 5116 5.163754 GCAAAGAATACGGCACACTCTTAAT 60.164 40.000 0.00 0.00 0.00 1.40
2775 5117 6.622896 GCAAAGAATACGGCACACTCTTAATT 60.623 38.462 0.00 0.00 0.00 1.40
2776 5118 7.305474 CAAAGAATACGGCACACTCTTAATTT 58.695 34.615 0.00 0.00 0.00 1.82
2777 5119 8.447833 CAAAGAATACGGCACACTCTTAATTTA 58.552 33.333 0.00 0.00 0.00 1.40
2778 5120 7.535489 AGAATACGGCACACTCTTAATTTAC 57.465 36.000 0.00 0.00 0.00 2.01
2779 5121 7.101054 AGAATACGGCACACTCTTAATTTACA 58.899 34.615 0.00 0.00 0.00 2.41
2780 5122 7.604927 AGAATACGGCACACTCTTAATTTACAA 59.395 33.333 0.00 0.00 0.00 2.41
2781 5123 7.675962 ATACGGCACACTCTTAATTTACAAA 57.324 32.000 0.00 0.00 0.00 2.83
2782 5124 6.380095 ACGGCACACTCTTAATTTACAAAA 57.620 33.333 0.00 0.00 0.00 2.44
2783 5125 6.797454 ACGGCACACTCTTAATTTACAAAAA 58.203 32.000 0.00 0.00 0.00 1.94
2784 5126 7.430441 ACGGCACACTCTTAATTTACAAAAAT 58.570 30.769 0.00 0.00 36.87 1.82
2785 5127 7.381139 ACGGCACACTCTTAATTTACAAAAATG 59.619 33.333 0.00 0.00 35.46 2.32
2786 5128 7.148820 CGGCACACTCTTAATTTACAAAAATGG 60.149 37.037 0.00 0.00 35.46 3.16
2787 5129 7.655732 GGCACACTCTTAATTTACAAAAATGGT 59.344 33.333 0.00 0.00 35.46 3.55
2788 5130 8.487176 GCACACTCTTAATTTACAAAAATGGTG 58.513 33.333 0.00 0.00 35.46 4.17
2789 5131 9.528018 CACACTCTTAATTTACAAAAATGGTGT 57.472 29.630 0.00 0.00 35.46 4.16
2809 5151 9.712305 ATGGTGTATAATCTGAGTATTTGTAGC 57.288 33.333 2.71 0.00 0.00 3.58
2810 5152 8.924303 TGGTGTATAATCTGAGTATTTGTAGCT 58.076 33.333 2.71 0.00 0.00 3.32
2814 5156 9.557338 GTATAATCTGAGTATTTGTAGCTACGG 57.443 37.037 18.74 0.00 0.00 4.02
2815 5157 6.466885 AATCTGAGTATTTGTAGCTACGGT 57.533 37.500 18.74 9.61 0.00 4.83
2816 5158 5.496133 TCTGAGTATTTGTAGCTACGGTC 57.504 43.478 18.74 9.10 0.00 4.79
2817 5159 4.337555 TCTGAGTATTTGTAGCTACGGTCC 59.662 45.833 18.74 5.93 0.00 4.46
2818 5160 4.018490 TGAGTATTTGTAGCTACGGTCCA 58.982 43.478 18.74 7.51 0.00 4.02
2819 5161 4.463539 TGAGTATTTGTAGCTACGGTCCAA 59.536 41.667 18.74 4.59 0.00 3.53
2820 5162 5.047164 TGAGTATTTGTAGCTACGGTCCAAA 60.047 40.000 18.74 13.07 0.00 3.28
2821 5163 5.173664 AGTATTTGTAGCTACGGTCCAAAC 58.826 41.667 18.74 10.06 0.00 2.93
2822 5164 3.472283 TTTGTAGCTACGGTCCAAACA 57.528 42.857 18.74 0.00 0.00 2.83
2823 5165 3.472283 TTGTAGCTACGGTCCAAACAA 57.528 42.857 18.74 4.17 0.00 2.83
2824 5166 3.472283 TGTAGCTACGGTCCAAACAAA 57.528 42.857 18.74 0.00 0.00 2.83
2825 5167 3.395639 TGTAGCTACGGTCCAAACAAAG 58.604 45.455 18.74 0.00 0.00 2.77
2826 5168 2.922740 AGCTACGGTCCAAACAAAGA 57.077 45.000 0.00 0.00 0.00 2.52
2827 5169 3.418684 AGCTACGGTCCAAACAAAGAT 57.581 42.857 0.00 0.00 0.00 2.40
2828 5170 3.074412 AGCTACGGTCCAAACAAAGATG 58.926 45.455 0.00 0.00 0.00 2.90
2829 5171 2.161609 GCTACGGTCCAAACAAAGATGG 59.838 50.000 0.00 0.00 38.09 3.51
2830 5172 2.358322 ACGGTCCAAACAAAGATGGT 57.642 45.000 0.00 0.00 37.94 3.55
2831 5173 2.227194 ACGGTCCAAACAAAGATGGTC 58.773 47.619 0.00 0.00 37.94 4.02
2832 5174 2.158667 ACGGTCCAAACAAAGATGGTCT 60.159 45.455 0.00 0.00 37.94 3.85
2833 5175 2.884639 CGGTCCAAACAAAGATGGTCTT 59.115 45.455 0.00 0.00 38.59 3.01
2834 5176 3.317993 CGGTCCAAACAAAGATGGTCTTT 59.682 43.478 0.00 0.00 46.75 2.52
2845 5187 5.712152 AAGATGGTCTTTGCCTACAAAAG 57.288 39.130 0.00 0.00 44.90 2.27
2846 5188 3.507622 AGATGGTCTTTGCCTACAAAAGC 59.492 43.478 0.00 0.00 44.90 3.51
2847 5189 2.660572 TGGTCTTTGCCTACAAAAGCA 58.339 42.857 0.00 0.00 44.90 3.91
2848 5190 2.360801 TGGTCTTTGCCTACAAAAGCAC 59.639 45.455 0.00 0.00 44.90 4.40
2849 5191 2.360801 GGTCTTTGCCTACAAAAGCACA 59.639 45.455 0.00 0.00 44.90 4.57
2850 5192 3.181480 GGTCTTTGCCTACAAAAGCACAA 60.181 43.478 0.00 0.00 44.90 3.33
2851 5193 4.044426 GTCTTTGCCTACAAAAGCACAAG 58.956 43.478 0.00 0.00 44.90 3.16
2852 5194 3.699038 TCTTTGCCTACAAAAGCACAAGT 59.301 39.130 0.00 0.00 44.90 3.16
2853 5195 4.159506 TCTTTGCCTACAAAAGCACAAGTT 59.840 37.500 0.00 0.00 44.90 2.66
2854 5196 3.708563 TGCCTACAAAAGCACAAGTTC 57.291 42.857 0.00 0.00 33.08 3.01
2855 5197 3.020274 TGCCTACAAAAGCACAAGTTCA 58.980 40.909 0.00 0.00 33.08 3.18
2856 5198 3.445450 TGCCTACAAAAGCACAAGTTCAA 59.555 39.130 0.00 0.00 33.08 2.69
2857 5199 4.044426 GCCTACAAAAGCACAAGTTCAAG 58.956 43.478 0.00 0.00 0.00 3.02
2858 5200 4.202010 GCCTACAAAAGCACAAGTTCAAGA 60.202 41.667 0.00 0.00 0.00 3.02
2859 5201 5.507985 GCCTACAAAAGCACAAGTTCAAGAT 60.508 40.000 0.00 0.00 0.00 2.40
2860 5202 6.507023 CCTACAAAAGCACAAGTTCAAGATT 58.493 36.000 0.00 0.00 0.00 2.40
2861 5203 6.638468 CCTACAAAAGCACAAGTTCAAGATTC 59.362 38.462 0.00 0.00 0.00 2.52
2862 5204 5.351458 ACAAAAGCACAAGTTCAAGATTCC 58.649 37.500 0.00 0.00 0.00 3.01
2863 5205 5.105392 ACAAAAGCACAAGTTCAAGATTCCA 60.105 36.000 0.00 0.00 0.00 3.53
2864 5206 4.574599 AAGCACAAGTTCAAGATTCCAC 57.425 40.909 0.00 0.00 0.00 4.02
2865 5207 3.554934 AGCACAAGTTCAAGATTCCACA 58.445 40.909 0.00 0.00 0.00 4.17
2866 5208 4.147321 AGCACAAGTTCAAGATTCCACAT 58.853 39.130 0.00 0.00 0.00 3.21
2867 5209 4.022589 AGCACAAGTTCAAGATTCCACATG 60.023 41.667 0.00 0.00 0.00 3.21
2868 5210 4.261741 GCACAAGTTCAAGATTCCACATGT 60.262 41.667 0.00 0.00 0.00 3.21
2869 5211 5.737063 GCACAAGTTCAAGATTCCACATGTT 60.737 40.000 0.00 0.00 0.00 2.71
2870 5212 6.275335 CACAAGTTCAAGATTCCACATGTTT 58.725 36.000 0.00 0.00 0.00 2.83
2871 5213 6.757947 CACAAGTTCAAGATTCCACATGTTTT 59.242 34.615 0.00 0.00 0.00 2.43
2872 5214 7.278424 CACAAGTTCAAGATTCCACATGTTTTT 59.722 33.333 0.00 0.00 0.00 1.94
2894 5236 7.976135 TTTTATTTAAACATGGCTTGCATGT 57.024 28.000 0.00 1.67 44.25 3.21
2895 5237 9.494271 TTTTTATTTAAACATGGCTTGCATGTA 57.506 25.926 7.39 0.00 41.85 2.29
2896 5238 9.494271 TTTTATTTAAACATGGCTTGCATGTAA 57.506 25.926 7.39 0.00 41.85 2.41
2897 5239 9.494271 TTTATTTAAACATGGCTTGCATGTAAA 57.506 25.926 7.39 6.33 41.85 2.01
2898 5240 9.664332 TTATTTAAACATGGCTTGCATGTAAAT 57.336 25.926 14.40 14.40 41.85 1.40
2899 5241 7.976135 TTTAAACATGGCTTGCATGTAAATT 57.024 28.000 7.39 2.51 41.85 1.82
2900 5242 7.976135 TTAAACATGGCTTGCATGTAAATTT 57.024 28.000 7.39 0.00 41.85 1.82
2901 5243 9.494271 TTTAAACATGGCTTGCATGTAAATTTA 57.506 25.926 7.39 0.00 41.85 1.40
2902 5244 7.976135 AAACATGGCTTGCATGTAAATTTAA 57.024 28.000 7.39 0.00 41.85 1.52
2903 5245 8.564509 AAACATGGCTTGCATGTAAATTTAAT 57.435 26.923 7.39 0.00 41.85 1.40
2904 5246 9.664332 AAACATGGCTTGCATGTAAATTTAATA 57.336 25.926 7.39 0.00 41.85 0.98
2905 5247 8.647143 ACATGGCTTGCATGTAAATTTAATAC 57.353 30.769 5.40 0.00 41.01 1.89
2906 5248 7.434897 ACATGGCTTGCATGTAAATTTAATACG 59.565 33.333 5.40 0.00 41.01 3.06
2907 5249 6.857956 TGGCTTGCATGTAAATTTAATACGT 58.142 32.000 0.00 0.00 0.00 3.57
2908 5250 7.986562 TGGCTTGCATGTAAATTTAATACGTA 58.013 30.769 0.00 0.00 0.00 3.57
2909 5251 7.911205 TGGCTTGCATGTAAATTTAATACGTAC 59.089 33.333 0.00 0.00 0.00 3.67
2910 5252 7.911205 GGCTTGCATGTAAATTTAATACGTACA 59.089 33.333 0.00 0.00 0.00 2.90
2911 5253 9.279904 GCTTGCATGTAAATTTAATACGTACAA 57.720 29.630 0.00 0.00 29.44 2.41
2920 5262 8.953507 AAATTTAATACGTACAAAGAAACGGG 57.046 30.769 0.00 0.00 43.25 5.28
2921 5263 5.529014 TTAATACGTACAAAGAAACGGGC 57.471 39.130 0.00 0.00 43.25 6.13
2922 5264 2.522836 TACGTACAAAGAAACGGGCA 57.477 45.000 0.00 0.00 43.25 5.36
2923 5265 1.666054 ACGTACAAAGAAACGGGCAA 58.334 45.000 0.00 0.00 43.25 4.52
2924 5266 1.600485 ACGTACAAAGAAACGGGCAAG 59.400 47.619 0.00 0.00 43.25 4.01
2925 5267 1.600485 CGTACAAAGAAACGGGCAAGT 59.400 47.619 0.00 0.00 35.51 3.16
2926 5268 2.601266 CGTACAAAGAAACGGGCAAGTG 60.601 50.000 0.00 0.00 35.51 3.16
2927 5269 1.757682 ACAAAGAAACGGGCAAGTGA 58.242 45.000 0.00 0.00 0.00 3.41
2928 5270 2.306847 ACAAAGAAACGGGCAAGTGAT 58.693 42.857 0.00 0.00 0.00 3.06
2929 5271 2.293399 ACAAAGAAACGGGCAAGTGATC 59.707 45.455 0.00 0.00 0.00 2.92
2930 5272 2.554032 CAAAGAAACGGGCAAGTGATCT 59.446 45.455 0.00 0.00 0.00 2.75
2931 5273 2.568623 AGAAACGGGCAAGTGATCTT 57.431 45.000 0.00 0.00 0.00 2.40
2932 5274 2.427506 AGAAACGGGCAAGTGATCTTC 58.572 47.619 0.00 0.00 0.00 2.87
2933 5275 2.151202 GAAACGGGCAAGTGATCTTCA 58.849 47.619 0.00 0.00 0.00 3.02
2934 5276 2.270352 AACGGGCAAGTGATCTTCAA 57.730 45.000 0.00 0.00 0.00 2.69
2935 5277 2.496899 ACGGGCAAGTGATCTTCAAT 57.503 45.000 0.00 0.00 0.00 2.57
2936 5278 2.795329 ACGGGCAAGTGATCTTCAATT 58.205 42.857 0.00 0.00 34.76 2.32
2937 5279 3.157087 ACGGGCAAGTGATCTTCAATTT 58.843 40.909 0.00 0.00 31.77 1.82
2938 5280 3.191371 ACGGGCAAGTGATCTTCAATTTC 59.809 43.478 0.00 0.00 31.77 2.17
2939 5281 3.728864 CGGGCAAGTGATCTTCAATTTCG 60.729 47.826 0.00 0.00 31.77 3.46
2940 5282 3.191371 GGGCAAGTGATCTTCAATTTCGT 59.809 43.478 0.00 0.00 31.77 3.85
2941 5283 4.406943 GGCAAGTGATCTTCAATTTCGTC 58.593 43.478 0.00 0.00 31.77 4.20
2942 5284 4.154918 GGCAAGTGATCTTCAATTTCGTCT 59.845 41.667 0.00 0.00 31.77 4.18
2943 5285 5.319931 GCAAGTGATCTTCAATTTCGTCTC 58.680 41.667 0.00 0.00 31.77 3.36
2944 5286 5.672321 GCAAGTGATCTTCAATTTCGTCTCC 60.672 44.000 0.00 0.00 31.77 3.71
2945 5287 5.152623 AGTGATCTTCAATTTCGTCTCCA 57.847 39.130 0.00 0.00 0.00 3.86
2946 5288 5.551233 AGTGATCTTCAATTTCGTCTCCAA 58.449 37.500 0.00 0.00 0.00 3.53
2947 5289 6.176183 AGTGATCTTCAATTTCGTCTCCAAT 58.824 36.000 0.00 0.00 0.00 3.16
2948 5290 6.314896 AGTGATCTTCAATTTCGTCTCCAATC 59.685 38.462 0.00 0.00 0.00 2.67
2949 5291 5.586243 TGATCTTCAATTTCGTCTCCAATCC 59.414 40.000 0.00 0.00 0.00 3.01
2950 5292 5.165961 TCTTCAATTTCGTCTCCAATCCT 57.834 39.130 0.00 0.00 0.00 3.24
2951 5293 4.937620 TCTTCAATTTCGTCTCCAATCCTG 59.062 41.667 0.00 0.00 0.00 3.86
2952 5294 4.551702 TCAATTTCGTCTCCAATCCTGA 57.448 40.909 0.00 0.00 0.00 3.86
2953 5295 5.102953 TCAATTTCGTCTCCAATCCTGAT 57.897 39.130 0.00 0.00 0.00 2.90
2954 5296 5.500234 TCAATTTCGTCTCCAATCCTGATT 58.500 37.500 0.00 0.00 0.00 2.57
2955 5297 5.945784 TCAATTTCGTCTCCAATCCTGATTT 59.054 36.000 0.00 0.00 0.00 2.17
2956 5298 6.434028 TCAATTTCGTCTCCAATCCTGATTTT 59.566 34.615 0.00 0.00 0.00 1.82
2957 5299 5.627499 TTTCGTCTCCAATCCTGATTTTG 57.373 39.130 0.00 0.00 0.00 2.44
2958 5300 3.009723 TCGTCTCCAATCCTGATTTTGC 58.990 45.455 0.00 0.00 0.00 3.68
2959 5301 3.012518 CGTCTCCAATCCTGATTTTGCT 58.987 45.455 0.00 0.00 0.00 3.91
2960 5302 3.181503 CGTCTCCAATCCTGATTTTGCTG 60.182 47.826 0.00 0.00 0.00 4.41
2961 5303 4.012374 GTCTCCAATCCTGATTTTGCTGA 58.988 43.478 0.00 0.00 0.00 4.26
2962 5304 4.096081 GTCTCCAATCCTGATTTTGCTGAG 59.904 45.833 0.00 0.00 0.00 3.35
2963 5305 4.019051 TCTCCAATCCTGATTTTGCTGAGA 60.019 41.667 0.00 0.00 0.00 3.27
2964 5306 4.863548 TCCAATCCTGATTTTGCTGAGAT 58.136 39.130 0.00 0.00 0.00 2.75
2965 5307 4.643334 TCCAATCCTGATTTTGCTGAGATG 59.357 41.667 0.00 0.00 0.00 2.90
2966 5308 4.401519 CCAATCCTGATTTTGCTGAGATGT 59.598 41.667 0.00 0.00 0.00 3.06
2967 5309 5.105473 CCAATCCTGATTTTGCTGAGATGTT 60.105 40.000 0.00 0.00 0.00 2.71
2968 5310 5.831702 ATCCTGATTTTGCTGAGATGTTC 57.168 39.130 0.00 0.00 0.00 3.18
2969 5311 4.654915 TCCTGATTTTGCTGAGATGTTCA 58.345 39.130 0.00 0.00 0.00 3.18
2970 5312 5.258841 TCCTGATTTTGCTGAGATGTTCAT 58.741 37.500 0.00 0.00 34.68 2.57
2971 5313 5.356190 TCCTGATTTTGCTGAGATGTTCATC 59.644 40.000 4.80 4.80 34.68 2.92
2972 5314 5.450137 CCTGATTTTGCTGAGATGTTCATCC 60.450 44.000 8.89 2.73 34.68 3.51
2973 5315 5.011586 TGATTTTGCTGAGATGTTCATCCA 58.988 37.500 8.89 6.52 34.68 3.41
2974 5316 5.655090 TGATTTTGCTGAGATGTTCATCCAT 59.345 36.000 8.89 0.00 34.68 3.41
2975 5317 5.988310 TTTTGCTGAGATGTTCATCCATT 57.012 34.783 8.89 0.00 34.68 3.16
2976 5318 4.976224 TTGCTGAGATGTTCATCCATTG 57.024 40.909 8.89 0.46 34.68 2.82
2977 5319 3.959293 TGCTGAGATGTTCATCCATTGT 58.041 40.909 8.89 0.00 34.68 2.71
2978 5320 4.338012 TGCTGAGATGTTCATCCATTGTT 58.662 39.130 8.89 0.00 34.68 2.83
2979 5321 4.157105 TGCTGAGATGTTCATCCATTGTTG 59.843 41.667 8.89 0.00 34.68 3.33
2980 5322 4.397103 GCTGAGATGTTCATCCATTGTTGA 59.603 41.667 8.89 0.00 34.68 3.18
2981 5323 5.067413 GCTGAGATGTTCATCCATTGTTGAT 59.933 40.000 8.89 0.00 34.68 2.57
2982 5324 6.405508 GCTGAGATGTTCATCCATTGTTGATT 60.406 38.462 8.89 0.00 34.68 2.57
2983 5325 7.201758 GCTGAGATGTTCATCCATTGTTGATTA 60.202 37.037 8.89 0.00 34.68 1.75
2984 5326 8.578448 TGAGATGTTCATCCATTGTTGATTAA 57.422 30.769 8.89 0.00 0.00 1.40
2985 5327 8.680001 TGAGATGTTCATCCATTGTTGATTAAG 58.320 33.333 8.89 0.00 0.00 1.85
2986 5328 8.812513 AGATGTTCATCCATTGTTGATTAAGA 57.187 30.769 8.89 0.00 0.00 2.10
2987 5329 9.417561 AGATGTTCATCCATTGTTGATTAAGAT 57.582 29.630 8.89 0.00 0.00 2.40
2989 5331 9.811995 ATGTTCATCCATTGTTGATTAAGATTG 57.188 29.630 0.00 0.00 0.00 2.67
2990 5332 7.760794 TGTTCATCCATTGTTGATTAAGATTGC 59.239 33.333 0.00 0.00 0.00 3.56
2991 5333 7.407393 TCATCCATTGTTGATTAAGATTGCA 57.593 32.000 0.00 0.00 0.00 4.08
2992 5334 7.259882 TCATCCATTGTTGATTAAGATTGCAC 58.740 34.615 0.00 0.00 0.00 4.57
2993 5335 5.964758 TCCATTGTTGATTAAGATTGCACC 58.035 37.500 0.00 0.00 0.00 5.01
2994 5336 5.105392 TCCATTGTTGATTAAGATTGCACCC 60.105 40.000 0.00 0.00 0.00 4.61
2995 5337 5.105228 CCATTGTTGATTAAGATTGCACCCT 60.105 40.000 0.00 0.00 0.00 4.34
2996 5338 6.096705 CCATTGTTGATTAAGATTGCACCCTA 59.903 38.462 0.00 0.00 0.00 3.53
2997 5339 6.757897 TTGTTGATTAAGATTGCACCCTAG 57.242 37.500 0.00 0.00 0.00 3.02
2998 5340 6.061022 TGTTGATTAAGATTGCACCCTAGA 57.939 37.500 0.00 0.00 0.00 2.43
2999 5341 6.662755 TGTTGATTAAGATTGCACCCTAGAT 58.337 36.000 0.00 0.00 0.00 1.98
3000 5342 7.801104 TGTTGATTAAGATTGCACCCTAGATA 58.199 34.615 0.00 0.00 0.00 1.98
3001 5343 7.933577 TGTTGATTAAGATTGCACCCTAGATAG 59.066 37.037 0.00 0.00 0.00 2.08
3002 5344 7.618019 TGATTAAGATTGCACCCTAGATAGT 57.382 36.000 0.00 0.00 0.00 2.12
3003 5345 8.721133 TGATTAAGATTGCACCCTAGATAGTA 57.279 34.615 0.00 0.00 0.00 1.82
3004 5346 8.807118 TGATTAAGATTGCACCCTAGATAGTAG 58.193 37.037 0.00 0.00 0.00 2.57
3005 5347 8.728596 ATTAAGATTGCACCCTAGATAGTAGT 57.271 34.615 0.00 0.00 0.00 2.73
3006 5348 8.548880 TTAAGATTGCACCCTAGATAGTAGTT 57.451 34.615 0.00 0.00 0.00 2.24
3007 5349 7.439108 AAGATTGCACCCTAGATAGTAGTTT 57.561 36.000 0.00 0.00 0.00 2.66
3008 5350 7.439108 AGATTGCACCCTAGATAGTAGTTTT 57.561 36.000 0.00 0.00 0.00 2.43
3009 5351 7.862675 AGATTGCACCCTAGATAGTAGTTTTT 58.137 34.615 0.00 0.00 0.00 1.94
3106 5448 9.589111 AACATGTTTAATTTGAAGTTACGGTTT 57.411 25.926 4.92 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.369052 CGCACTATGGAGGTTAAGGTTGA 60.369 47.826 0.00 0.00 0.00 3.18
13 14 3.118738 AGGTTCGCACTATGGAGGTTAAG 60.119 47.826 0.00 0.00 0.00 1.85
63 64 7.832187 TCCTACTCGGGACATAATTTCAAAAAT 59.168 33.333 0.00 0.00 0.00 1.82
64 65 7.169591 TCCTACTCGGGACATAATTTCAAAAA 58.830 34.615 0.00 0.00 0.00 1.94
74 75 1.968493 GGCATTCCTACTCGGGACATA 59.032 52.381 0.00 0.00 34.78 2.29
152 153 8.954350 GTCCGGTGTCTACAATACATATAGTAT 58.046 37.037 0.00 0.00 45.27 2.12
224 243 6.461509 GGCTTAATTGGTGTCCCATATCAAAG 60.462 42.308 0.00 0.00 41.49 2.77
231 250 2.225242 TGTGGCTTAATTGGTGTCCCAT 60.225 45.455 0.00 0.00 41.49 4.00
252 271 3.371965 TCGGGAGCAACCTAATAACTCT 58.628 45.455 0.29 0.00 38.98 3.24
272 291 1.196808 ACGACGCCAACATTGAACATC 59.803 47.619 0.00 0.00 0.00 3.06
312 331 5.421056 TGAACATCGGGAGTAGATAACAACT 59.579 40.000 0.00 0.00 0.00 3.16
358 377 9.504710 CAGTTTCATCATCTCTTTTCATTCATC 57.495 33.333 0.00 0.00 0.00 2.92
368 387 5.511386 AAGGGACAGTTTCATCATCTCTT 57.489 39.130 0.00 0.00 0.00 2.85
369 388 6.462207 CGATAAGGGACAGTTTCATCATCTCT 60.462 42.308 0.00 0.00 0.00 3.10
413 434 4.801891 TGCTTGAGTTTGATTGAATGAGC 58.198 39.130 0.00 0.00 0.00 4.26
414 435 7.313646 AGATTGCTTGAGTTTGATTGAATGAG 58.686 34.615 0.00 0.00 0.00 2.90
451 472 4.398673 GGGTGACACTTATACGTCTCTCTT 59.601 45.833 5.39 0.00 33.18 2.85
455 476 4.398673 AGAAGGGTGACACTTATACGTCTC 59.601 45.833 0.00 0.00 33.18 3.36
517 2554 4.402155 TGTGCATGATAGAAAACCCAATCC 59.598 41.667 0.00 0.00 0.00 3.01
520 2557 5.015515 TCATGTGCATGATAGAAAACCCAA 58.984 37.500 10.48 0.00 42.42 4.12
550 2587 4.513692 TGAACCTTAAACAACATCAGACGG 59.486 41.667 0.00 0.00 0.00 4.79
586 2623 4.511527 ACAACCATGCATTGTCAAAAACA 58.488 34.783 3.56 0.00 35.32 2.83
597 2635 6.832520 TTTATACACAAGACAACCATGCAT 57.167 33.333 0.00 0.00 0.00 3.96
598 2636 6.641169 TTTTATACACAAGACAACCATGCA 57.359 33.333 0.00 0.00 0.00 3.96
599 2637 7.312154 TCATTTTATACACAAGACAACCATGC 58.688 34.615 0.00 0.00 0.00 4.06
600 2638 9.292846 CATCATTTTATACACAAGACAACCATG 57.707 33.333 0.00 0.00 0.00 3.66
676 2714 2.056577 GCTTCAGTGTGAATTTGCTGC 58.943 47.619 0.00 0.00 35.59 5.25
685 2723 4.454678 AGAATGAACTTGCTTCAGTGTGA 58.545 39.130 0.00 0.00 42.36 3.58
695 2733 5.699839 ACCAACGAATAAGAATGAACTTGC 58.300 37.500 0.00 0.00 0.00 4.01
721 2759 7.887996 AAAATGCATCATAATGTTTCGTTGT 57.112 28.000 0.00 0.00 35.18 3.32
803 2957 1.062810 AGAGGCCCGGGATATATCCTC 60.063 57.143 29.31 27.71 46.35 3.71
805 2959 1.123928 CAGAGGCCCGGGATATATCC 58.876 60.000 29.31 21.82 46.41 2.59
806 2960 0.466124 GCAGAGGCCCGGGATATATC 59.534 60.000 29.31 13.64 0.00 1.63
808 2962 0.252696 ATGCAGAGGCCCGGGATATA 60.253 55.000 29.31 2.77 40.13 0.86
809 2963 1.539869 ATGCAGAGGCCCGGGATAT 60.540 57.895 29.31 8.83 40.13 1.63
810 2964 2.122413 ATGCAGAGGCCCGGGATA 60.122 61.111 29.31 0.88 40.13 2.59
812 2966 4.804420 AGATGCAGAGGCCCGGGA 62.804 66.667 29.31 0.00 40.13 5.14
813 2967 4.559063 CAGATGCAGAGGCCCGGG 62.559 72.222 19.09 19.09 40.13 5.73
815 2969 3.457625 CTCCAGATGCAGAGGCCCG 62.458 68.421 0.00 0.00 40.13 6.13
816 2970 1.630126 TTCTCCAGATGCAGAGGCCC 61.630 60.000 0.00 0.00 40.13 5.80
817 2971 0.254178 TTTCTCCAGATGCAGAGGCC 59.746 55.000 0.00 0.00 40.13 5.19
818 2972 1.339438 TGTTTCTCCAGATGCAGAGGC 60.339 52.381 0.00 0.00 41.68 4.70
819 2973 2.775911 TGTTTCTCCAGATGCAGAGG 57.224 50.000 0.00 0.00 0.00 3.69
820 2974 4.082895 CCTTTTGTTTCTCCAGATGCAGAG 60.083 45.833 0.00 0.00 0.00 3.35
822 2976 3.057033 CCCTTTTGTTTCTCCAGATGCAG 60.057 47.826 0.00 0.00 0.00 4.41
827 2981 4.714632 CTGTACCCTTTTGTTTCTCCAGA 58.285 43.478 0.00 0.00 0.00 3.86
828 2982 3.253432 GCTGTACCCTTTTGTTTCTCCAG 59.747 47.826 0.00 0.00 0.00 3.86
833 3116 2.876550 ACTCGCTGTACCCTTTTGTTTC 59.123 45.455 0.00 0.00 0.00 2.78
860 3146 3.434940 AGGGGATATTTCCGGTTATGC 57.565 47.619 0.00 3.17 43.63 3.14
950 3239 8.510505 GCACAAAGAGAATTTTCTATCTTGAGT 58.489 33.333 13.14 4.53 37.73 3.41
957 3246 6.595716 AGCTACGCACAAAGAGAATTTTCTAT 59.404 34.615 0.00 0.00 37.73 1.98
958 3247 5.932303 AGCTACGCACAAAGAGAATTTTCTA 59.068 36.000 0.00 0.00 37.73 2.10
1035 3340 1.195115 AGAAGAGCAAGGCCACGATA 58.805 50.000 5.01 0.00 0.00 2.92
1060 3365 2.331893 CCGCTGAAACAATGGCCGA 61.332 57.895 0.00 0.00 0.00 5.54
1065 3370 3.762779 GGAAAGATCCGCTGAAACAATG 58.237 45.455 0.00 0.00 35.59 2.82
1295 3600 1.374252 CCGTCACAGCCCTGTACAC 60.374 63.158 0.00 0.82 42.83 2.90
1314 3619 1.523258 GCCATCGAGCAGCACTGAT 60.523 57.895 0.81 0.00 0.00 2.90
1479 3784 1.226745 TATGGTGCTTACCGCGACG 60.227 57.895 8.23 0.00 43.27 5.12
1493 3798 5.985530 TGATCTGAAGCTTGTATTCGTATGG 59.014 40.000 2.10 0.00 0.00 2.74
1496 3801 6.451064 TCTGATCTGAAGCTTGTATTCGTA 57.549 37.500 2.10 0.00 0.00 3.43
1497 3802 5.330455 TCTGATCTGAAGCTTGTATTCGT 57.670 39.130 2.10 0.00 0.00 3.85
1498 3803 5.809562 AGTTCTGATCTGAAGCTTGTATTCG 59.190 40.000 14.63 0.00 0.00 3.34
1499 3804 6.815641 TGAGTTCTGATCTGAAGCTTGTATTC 59.184 38.462 14.63 0.00 0.00 1.75
1500 3805 6.705302 TGAGTTCTGATCTGAAGCTTGTATT 58.295 36.000 14.63 0.00 0.00 1.89
1526 3838 8.331742 GTTCATAGCAGAATTAAGCAACTAGAC 58.668 37.037 0.00 0.00 0.00 2.59
1527 3839 8.260818 AGTTCATAGCAGAATTAAGCAACTAGA 58.739 33.333 0.00 0.00 0.00 2.43
1531 3843 6.490534 GGAGTTCATAGCAGAATTAAGCAAC 58.509 40.000 4.63 0.94 0.00 4.17
1545 3861 3.659786 TCACAACAACCGGAGTTCATAG 58.340 45.455 9.46 3.37 32.45 2.23
1557 3875 2.744202 CCCAGCTGTAGATCACAACAAC 59.256 50.000 13.81 0.00 36.48 3.32
1559 3877 1.339055 GCCCAGCTGTAGATCACAACA 60.339 52.381 13.81 0.00 36.48 3.33
1560 3878 1.373570 GCCCAGCTGTAGATCACAAC 58.626 55.000 13.81 0.00 36.48 3.32
1561 3879 0.108186 CGCCCAGCTGTAGATCACAA 60.108 55.000 13.81 0.00 36.48 3.33
1562 3880 1.517361 CGCCCAGCTGTAGATCACA 59.483 57.895 13.81 0.00 35.30 3.58
1563 3881 1.227380 CCGCCCAGCTGTAGATCAC 60.227 63.158 13.81 0.00 0.00 3.06
1564 3882 2.434843 CCCGCCCAGCTGTAGATCA 61.435 63.158 13.81 0.00 0.00 2.92
1565 3883 2.423446 CCCGCCCAGCTGTAGATC 59.577 66.667 13.81 0.00 0.00 2.75
1566 3884 3.866582 GCCCGCCCAGCTGTAGAT 61.867 66.667 13.81 0.00 0.00 1.98
1588 3906 2.893398 CCTAGCTCCACGTCCCAC 59.107 66.667 0.00 0.00 0.00 4.61
1637 3955 2.049063 GAGGTCGCTGTTCGCTGT 60.049 61.111 0.00 0.00 38.27 4.40
1639 3957 4.070552 GGGAGGTCGCTGTTCGCT 62.071 66.667 0.00 0.00 38.27 4.93
1792 4110 4.124351 CTGGGCGCGGTCTCGTTA 62.124 66.667 8.83 0.00 38.89 3.18
2059 4377 0.392863 CCATCTTCACCATGGCGTCA 60.393 55.000 13.04 0.00 34.59 4.35
2197 4521 3.682696 AGCTCATCATCACACACACAAT 58.317 40.909 0.00 0.00 0.00 2.71
2217 4541 1.165907 TGCAACCGTTGGAAGCAGAG 61.166 55.000 13.12 0.00 33.14 3.35
2376 4716 6.183360 CGAACTTTCAGCACACAAATTGAAAA 60.183 34.615 0.00 0.00 38.59 2.29
2405 4745 0.733909 GCCCAGCTCGTTTGCAAATC 60.734 55.000 16.21 8.28 34.99 2.17
2525 4866 2.423446 CCAGGAGCTGGCCGTATC 59.577 66.667 0.00 0.00 45.13 2.24
2563 4904 8.726988 GCAATGTGGTACTAATCAGAACTTAAA 58.273 33.333 0.00 0.00 0.00 1.52
2594 4935 2.415625 CCCACCGACTCTTCTTTCGTAG 60.416 54.545 0.00 0.00 33.23 3.51
2597 4938 0.389948 CCCCACCGACTCTTCTTTCG 60.390 60.000 0.00 0.00 34.93 3.46
2630 4971 2.770164 TGAAGTAAGGCTTGCTCCTC 57.230 50.000 18.31 13.27 37.59 3.71
2644 4985 4.622695 GCTGAGAAGGCTATGACTTGAAGT 60.623 45.833 0.00 0.00 26.99 3.01
2645 4986 3.870419 GCTGAGAAGGCTATGACTTGAAG 59.130 47.826 0.00 0.00 26.99 3.02
2646 4987 3.369892 GGCTGAGAAGGCTATGACTTGAA 60.370 47.826 0.00 0.00 26.99 2.69
2647 4988 2.169352 GGCTGAGAAGGCTATGACTTGA 59.831 50.000 0.00 0.00 26.99 3.02
2657 4999 2.461416 GTCGAAAGGCTGAGAAGGC 58.539 57.895 0.00 0.00 0.00 4.35
2667 5009 5.696724 ACTACACTTGATTTGAGTCGAAAGG 59.303 40.000 0.00 0.00 0.00 3.11
2672 5014 9.737427 AATAGATACTACACTTGATTTGAGTCG 57.263 33.333 0.00 0.00 0.00 4.18
2706 5048 8.315482 GGCCCTTTTGGTAGTCAAATATTAAAA 58.685 33.333 0.00 0.00 43.95 1.52
2715 5057 0.250989 CGGGCCCTTTTGGTAGTCAA 60.251 55.000 22.43 0.00 38.10 3.18
2717 5059 0.958876 CACGGGCCCTTTTGGTAGTC 60.959 60.000 22.43 0.00 38.10 2.59
2723 5065 3.601685 AACGCACGGGCCCTTTTG 61.602 61.111 22.43 15.24 36.38 2.44
2725 5067 2.962142 TTACAACGCACGGGCCCTTT 62.962 55.000 22.43 2.91 36.38 3.11
2728 5070 3.729698 GTTACAACGCACGGGCCC 61.730 66.667 13.57 13.57 36.38 5.80
2729 5071 4.079748 CGTTACAACGCACGGGCC 62.080 66.667 2.82 0.00 46.06 5.80
2741 5083 2.606272 CCGTATTCTTTGCTCCCGTTAC 59.394 50.000 0.00 0.00 0.00 2.50
2742 5084 2.896168 CCGTATTCTTTGCTCCCGTTA 58.104 47.619 0.00 0.00 0.00 3.18
2747 5089 1.130561 GTGTGCCGTATTCTTTGCTCC 59.869 52.381 0.00 0.00 0.00 4.70
2751 5093 5.856126 TTAAGAGTGTGCCGTATTCTTTG 57.144 39.130 0.00 0.00 31.19 2.77
2752 5094 7.448748 AAATTAAGAGTGTGCCGTATTCTTT 57.551 32.000 0.00 0.00 31.19 2.52
2753 5095 7.604927 TGTAAATTAAGAGTGTGCCGTATTCTT 59.395 33.333 0.00 0.00 33.15 2.52
2754 5096 7.101054 TGTAAATTAAGAGTGTGCCGTATTCT 58.899 34.615 0.00 0.00 0.00 2.40
2755 5097 7.298507 TGTAAATTAAGAGTGTGCCGTATTC 57.701 36.000 0.00 0.00 0.00 1.75
2756 5098 7.675962 TTGTAAATTAAGAGTGTGCCGTATT 57.324 32.000 0.00 0.00 0.00 1.89
2757 5099 7.675962 TTTGTAAATTAAGAGTGTGCCGTAT 57.324 32.000 0.00 0.00 0.00 3.06
2758 5100 7.493743 TTTTGTAAATTAAGAGTGTGCCGTA 57.506 32.000 0.00 0.00 0.00 4.02
2759 5101 6.380095 TTTTGTAAATTAAGAGTGTGCCGT 57.620 33.333 0.00 0.00 0.00 5.68
2760 5102 7.148820 CCATTTTTGTAAATTAAGAGTGTGCCG 60.149 37.037 0.00 0.00 31.63 5.69
2761 5103 7.655732 ACCATTTTTGTAAATTAAGAGTGTGCC 59.344 33.333 0.00 0.00 31.63 5.01
2762 5104 8.487176 CACCATTTTTGTAAATTAAGAGTGTGC 58.513 33.333 0.00 0.00 31.63 4.57
2763 5105 9.528018 ACACCATTTTTGTAAATTAAGAGTGTG 57.472 29.630 0.00 0.00 31.63 3.82
2783 5125 9.712305 GCTACAAATACTCAGATTATACACCAT 57.288 33.333 0.00 0.00 0.00 3.55
2784 5126 8.924303 AGCTACAAATACTCAGATTATACACCA 58.076 33.333 0.00 0.00 0.00 4.17
2788 5130 9.557338 CCGTAGCTACAAATACTCAGATTATAC 57.443 37.037 23.21 0.00 0.00 1.47
2789 5131 9.293404 ACCGTAGCTACAAATACTCAGATTATA 57.707 33.333 23.21 0.00 0.00 0.98
2790 5132 8.179509 ACCGTAGCTACAAATACTCAGATTAT 57.820 34.615 23.21 0.00 0.00 1.28
2791 5133 7.255381 GGACCGTAGCTACAAATACTCAGATTA 60.255 40.741 23.21 0.00 0.00 1.75
2792 5134 6.461231 GGACCGTAGCTACAAATACTCAGATT 60.461 42.308 23.21 0.00 0.00 2.40
2793 5135 5.009811 GGACCGTAGCTACAAATACTCAGAT 59.990 44.000 23.21 0.00 0.00 2.90
2794 5136 4.337555 GGACCGTAGCTACAAATACTCAGA 59.662 45.833 23.21 0.00 0.00 3.27
2795 5137 4.097437 TGGACCGTAGCTACAAATACTCAG 59.903 45.833 23.21 3.89 0.00 3.35
2796 5138 4.018490 TGGACCGTAGCTACAAATACTCA 58.982 43.478 23.21 8.91 0.00 3.41
2797 5139 4.644103 TGGACCGTAGCTACAAATACTC 57.356 45.455 23.21 7.58 0.00 2.59
2798 5140 5.173664 GTTTGGACCGTAGCTACAAATACT 58.826 41.667 23.21 0.00 34.11 2.12
2799 5141 4.931002 TGTTTGGACCGTAGCTACAAATAC 59.069 41.667 23.21 9.19 34.11 1.89
2800 5142 5.149973 TGTTTGGACCGTAGCTACAAATA 57.850 39.130 23.21 11.02 34.11 1.40
2801 5143 4.010667 TGTTTGGACCGTAGCTACAAAT 57.989 40.909 23.21 7.90 34.11 2.32
2802 5144 3.472283 TGTTTGGACCGTAGCTACAAA 57.528 42.857 23.21 12.61 0.00 2.83
2803 5145 3.472283 TTGTTTGGACCGTAGCTACAA 57.528 42.857 23.21 6.75 0.00 2.41
2804 5146 3.069872 TCTTTGTTTGGACCGTAGCTACA 59.930 43.478 23.21 0.03 0.00 2.74
2805 5147 3.656559 TCTTTGTTTGGACCGTAGCTAC 58.343 45.455 14.19 14.19 0.00 3.58
2806 5148 4.250464 CATCTTTGTTTGGACCGTAGCTA 58.750 43.478 0.00 0.00 0.00 3.32
2807 5149 2.922740 TCTTTGTTTGGACCGTAGCT 57.077 45.000 0.00 0.00 0.00 3.32
2808 5150 2.161609 CCATCTTTGTTTGGACCGTAGC 59.838 50.000 0.00 0.00 34.81 3.58
2809 5151 3.408634 ACCATCTTTGTTTGGACCGTAG 58.591 45.455 0.00 0.00 36.79 3.51
2810 5152 3.071892 AGACCATCTTTGTTTGGACCGTA 59.928 43.478 0.00 0.00 36.79 4.02
2811 5153 2.158667 AGACCATCTTTGTTTGGACCGT 60.159 45.455 0.00 0.00 36.79 4.83
2812 5154 2.504367 AGACCATCTTTGTTTGGACCG 58.496 47.619 0.00 0.00 36.79 4.79
2813 5155 4.937201 AAAGACCATCTTTGTTTGGACC 57.063 40.909 3.05 0.00 44.34 4.46
2822 5164 5.509670 GCTTTTGTAGGCAAAGACCATCTTT 60.510 40.000 0.00 0.00 46.75 2.52
2823 5165 4.021981 GCTTTTGTAGGCAAAGACCATCTT 60.022 41.667 0.00 0.00 44.32 2.40
2824 5166 3.507622 GCTTTTGTAGGCAAAGACCATCT 59.492 43.478 0.00 0.00 44.32 2.90
2825 5167 3.255642 TGCTTTTGTAGGCAAAGACCATC 59.744 43.478 0.00 0.00 44.32 3.51
2826 5168 3.005791 GTGCTTTTGTAGGCAAAGACCAT 59.994 43.478 0.00 0.00 44.32 3.55
2827 5169 2.360801 GTGCTTTTGTAGGCAAAGACCA 59.639 45.455 0.00 0.00 44.32 4.02
2828 5170 2.360801 TGTGCTTTTGTAGGCAAAGACC 59.639 45.455 0.00 0.00 44.32 3.85
2829 5171 3.708563 TGTGCTTTTGTAGGCAAAGAC 57.291 42.857 0.00 0.00 44.32 3.01
2830 5172 3.699038 ACTTGTGCTTTTGTAGGCAAAGA 59.301 39.130 0.00 0.00 44.32 2.52
2831 5173 4.045636 ACTTGTGCTTTTGTAGGCAAAG 57.954 40.909 0.00 0.00 44.32 2.77
2832 5174 4.081972 TGAACTTGTGCTTTTGTAGGCAAA 60.082 37.500 0.00 0.00 42.25 3.68
2833 5175 3.445450 TGAACTTGTGCTTTTGTAGGCAA 59.555 39.130 0.00 0.00 40.26 4.52
2834 5176 3.020274 TGAACTTGTGCTTTTGTAGGCA 58.980 40.909 0.00 0.00 36.01 4.75
2835 5177 3.708563 TGAACTTGTGCTTTTGTAGGC 57.291 42.857 0.00 0.00 0.00 3.93
2836 5178 5.499139 TCTTGAACTTGTGCTTTTGTAGG 57.501 39.130 0.00 0.00 0.00 3.18
2837 5179 6.638468 GGAATCTTGAACTTGTGCTTTTGTAG 59.362 38.462 0.00 0.00 0.00 2.74
2838 5180 6.096141 TGGAATCTTGAACTTGTGCTTTTGTA 59.904 34.615 0.00 0.00 0.00 2.41
2839 5181 5.105392 TGGAATCTTGAACTTGTGCTTTTGT 60.105 36.000 0.00 0.00 0.00 2.83
2840 5182 5.232838 GTGGAATCTTGAACTTGTGCTTTTG 59.767 40.000 0.00 0.00 0.00 2.44
2841 5183 5.105392 TGTGGAATCTTGAACTTGTGCTTTT 60.105 36.000 0.00 0.00 0.00 2.27
2842 5184 4.402155 TGTGGAATCTTGAACTTGTGCTTT 59.598 37.500 0.00 0.00 0.00 3.51
2843 5185 3.953612 TGTGGAATCTTGAACTTGTGCTT 59.046 39.130 0.00 0.00 0.00 3.91
2844 5186 3.554934 TGTGGAATCTTGAACTTGTGCT 58.445 40.909 0.00 0.00 0.00 4.40
2845 5187 3.988379 TGTGGAATCTTGAACTTGTGC 57.012 42.857 0.00 0.00 0.00 4.57
2846 5188 5.443185 ACATGTGGAATCTTGAACTTGTG 57.557 39.130 0.00 0.00 31.87 3.33
2847 5189 6.469782 AAACATGTGGAATCTTGAACTTGT 57.530 33.333 0.00 0.00 33.75 3.16
2848 5190 7.775397 AAAAACATGTGGAATCTTGAACTTG 57.225 32.000 0.00 0.00 0.00 3.16
2882 5224 7.488322 ACGTATTAAATTTACATGCAAGCCAT 58.512 30.769 0.00 0.00 33.39 4.40
2883 5225 6.857956 ACGTATTAAATTTACATGCAAGCCA 58.142 32.000 0.00 0.00 0.00 4.75
2884 5226 7.911205 TGTACGTATTAAATTTACATGCAAGCC 59.089 33.333 0.00 0.00 0.00 4.35
2885 5227 8.829514 TGTACGTATTAAATTTACATGCAAGC 57.170 30.769 0.00 0.00 0.00 4.01
2895 5237 7.538334 GCCCGTTTCTTTGTACGTATTAAATTT 59.462 33.333 0.00 0.00 36.09 1.82
2896 5238 7.022979 GCCCGTTTCTTTGTACGTATTAAATT 58.977 34.615 0.00 0.00 36.09 1.82
2897 5239 6.149142 TGCCCGTTTCTTTGTACGTATTAAAT 59.851 34.615 0.00 0.00 36.09 1.40
2898 5240 5.468072 TGCCCGTTTCTTTGTACGTATTAAA 59.532 36.000 0.00 3.31 36.09 1.52
2899 5241 4.993584 TGCCCGTTTCTTTGTACGTATTAA 59.006 37.500 0.00 0.00 36.09 1.40
2900 5242 4.564041 TGCCCGTTTCTTTGTACGTATTA 58.436 39.130 0.00 0.00 36.09 0.98
2901 5243 3.401182 TGCCCGTTTCTTTGTACGTATT 58.599 40.909 0.00 0.00 36.09 1.89
2902 5244 3.042871 TGCCCGTTTCTTTGTACGTAT 57.957 42.857 0.00 0.00 36.09 3.06
2903 5245 2.522836 TGCCCGTTTCTTTGTACGTA 57.477 45.000 0.00 0.00 36.09 3.57
2904 5246 1.600485 CTTGCCCGTTTCTTTGTACGT 59.400 47.619 0.00 0.00 36.09 3.57
2905 5247 1.600485 ACTTGCCCGTTTCTTTGTACG 59.400 47.619 0.00 0.00 37.50 3.67
2906 5248 2.614983 TCACTTGCCCGTTTCTTTGTAC 59.385 45.455 0.00 0.00 0.00 2.90
2907 5249 2.920524 TCACTTGCCCGTTTCTTTGTA 58.079 42.857 0.00 0.00 0.00 2.41
2908 5250 1.757682 TCACTTGCCCGTTTCTTTGT 58.242 45.000 0.00 0.00 0.00 2.83
2909 5251 2.554032 AGATCACTTGCCCGTTTCTTTG 59.446 45.455 0.00 0.00 0.00 2.77
2910 5252 2.863809 AGATCACTTGCCCGTTTCTTT 58.136 42.857 0.00 0.00 0.00 2.52
2911 5253 2.568623 AGATCACTTGCCCGTTTCTT 57.431 45.000 0.00 0.00 0.00 2.52
2912 5254 2.224523 TGAAGATCACTTGCCCGTTTCT 60.225 45.455 0.00 0.00 36.39 2.52
2913 5255 2.151202 TGAAGATCACTTGCCCGTTTC 58.849 47.619 0.00 0.00 36.39 2.78
2914 5256 2.270352 TGAAGATCACTTGCCCGTTT 57.730 45.000 0.00 0.00 36.39 3.60
2915 5257 2.270352 TTGAAGATCACTTGCCCGTT 57.730 45.000 0.00 0.00 36.39 4.44
2916 5258 2.496899 ATTGAAGATCACTTGCCCGT 57.503 45.000 0.00 0.00 36.39 5.28
2917 5259 3.728864 CGAAATTGAAGATCACTTGCCCG 60.729 47.826 0.00 0.00 36.39 6.13
2918 5260 3.191371 ACGAAATTGAAGATCACTTGCCC 59.809 43.478 0.00 0.00 36.39 5.36
2919 5261 4.154918 AGACGAAATTGAAGATCACTTGCC 59.845 41.667 0.00 0.00 36.39 4.52
2920 5262 5.288543 AGACGAAATTGAAGATCACTTGC 57.711 39.130 0.00 0.00 36.39 4.01
2921 5263 5.409520 TGGAGACGAAATTGAAGATCACTTG 59.590 40.000 0.00 0.00 36.39 3.16
2922 5264 5.551233 TGGAGACGAAATTGAAGATCACTT 58.449 37.500 0.00 0.00 39.24 3.16
2923 5265 5.152623 TGGAGACGAAATTGAAGATCACT 57.847 39.130 0.00 0.00 0.00 3.41
2924 5266 5.862924 TTGGAGACGAAATTGAAGATCAC 57.137 39.130 0.00 0.00 0.00 3.06
2925 5267 5.586243 GGATTGGAGACGAAATTGAAGATCA 59.414 40.000 0.00 0.00 0.00 2.92
2926 5268 5.819901 AGGATTGGAGACGAAATTGAAGATC 59.180 40.000 0.00 0.00 0.00 2.75
2927 5269 5.587844 CAGGATTGGAGACGAAATTGAAGAT 59.412 40.000 0.00 0.00 0.00 2.40
2928 5270 4.937620 CAGGATTGGAGACGAAATTGAAGA 59.062 41.667 0.00 0.00 0.00 2.87
2929 5271 4.937620 TCAGGATTGGAGACGAAATTGAAG 59.062 41.667 0.00 0.00 0.00 3.02
2930 5272 4.905429 TCAGGATTGGAGACGAAATTGAA 58.095 39.130 0.00 0.00 0.00 2.69
2931 5273 4.551702 TCAGGATTGGAGACGAAATTGA 57.448 40.909 0.00 0.00 0.00 2.57
2932 5274 5.824904 AATCAGGATTGGAGACGAAATTG 57.175 39.130 0.00 0.00 0.00 2.32
2933 5275 6.624423 CAAAATCAGGATTGGAGACGAAATT 58.376 36.000 0.00 0.00 0.00 1.82
2934 5276 5.393461 GCAAAATCAGGATTGGAGACGAAAT 60.393 40.000 0.00 0.00 0.00 2.17
2935 5277 4.082787 GCAAAATCAGGATTGGAGACGAAA 60.083 41.667 0.00 0.00 0.00 3.46
2936 5278 3.440173 GCAAAATCAGGATTGGAGACGAA 59.560 43.478 0.00 0.00 0.00 3.85
2937 5279 3.009723 GCAAAATCAGGATTGGAGACGA 58.990 45.455 0.00 0.00 0.00 4.20
2938 5280 3.012518 AGCAAAATCAGGATTGGAGACG 58.987 45.455 0.00 0.00 0.00 4.18
2939 5281 4.012374 TCAGCAAAATCAGGATTGGAGAC 58.988 43.478 0.00 0.00 0.00 3.36
2940 5282 4.019051 TCTCAGCAAAATCAGGATTGGAGA 60.019 41.667 0.00 0.00 0.00 3.71
2941 5283 4.267536 TCTCAGCAAAATCAGGATTGGAG 58.732 43.478 0.00 0.00 0.00 3.86
2942 5284 4.305539 TCTCAGCAAAATCAGGATTGGA 57.694 40.909 0.00 0.00 0.00 3.53
2943 5285 4.401519 ACATCTCAGCAAAATCAGGATTGG 59.598 41.667 0.00 0.00 0.00 3.16
2944 5286 5.578005 ACATCTCAGCAAAATCAGGATTG 57.422 39.130 0.00 0.00 0.00 2.67
2945 5287 5.713389 TGAACATCTCAGCAAAATCAGGATT 59.287 36.000 0.00 0.00 0.00 3.01
2946 5288 5.258841 TGAACATCTCAGCAAAATCAGGAT 58.741 37.500 0.00 0.00 0.00 3.24
2947 5289 4.654915 TGAACATCTCAGCAAAATCAGGA 58.345 39.130 0.00 0.00 0.00 3.86
2948 5290 5.450137 GGATGAACATCTCAGCAAAATCAGG 60.450 44.000 13.34 0.00 42.55 3.86
2949 5291 5.124936 TGGATGAACATCTCAGCAAAATCAG 59.875 40.000 13.34 0.00 42.55 2.90
2950 5292 5.011586 TGGATGAACATCTCAGCAAAATCA 58.988 37.500 13.34 0.00 42.55 2.57
2951 5293 5.571784 TGGATGAACATCTCAGCAAAATC 57.428 39.130 13.34 0.00 42.55 2.17
2952 5294 6.070995 ACAATGGATGAACATCTCAGCAAAAT 60.071 34.615 13.34 0.00 42.55 1.82
2953 5295 5.244402 ACAATGGATGAACATCTCAGCAAAA 59.756 36.000 13.34 0.00 42.55 2.44
2954 5296 4.768448 ACAATGGATGAACATCTCAGCAAA 59.232 37.500 13.34 0.00 42.55 3.68
2955 5297 4.338012 ACAATGGATGAACATCTCAGCAA 58.662 39.130 13.34 0.00 42.55 3.91
2956 5298 3.959293 ACAATGGATGAACATCTCAGCA 58.041 40.909 13.34 4.79 42.55 4.41
2957 5299 4.397103 TCAACAATGGATGAACATCTCAGC 59.603 41.667 13.34 0.00 39.89 4.26
2958 5300 6.694877 ATCAACAATGGATGAACATCTCAG 57.305 37.500 13.34 5.54 37.52 3.35
2959 5301 8.578448 TTAATCAACAATGGATGAACATCTCA 57.422 30.769 13.34 10.32 37.92 3.27
2960 5302 8.896744 TCTTAATCAACAATGGATGAACATCTC 58.103 33.333 13.34 5.79 37.92 2.75
2961 5303 8.812513 TCTTAATCAACAATGGATGAACATCT 57.187 30.769 13.34 0.00 37.92 2.90
2963 5305 9.811995 CAATCTTAATCAACAATGGATGAACAT 57.188 29.630 0.00 0.00 29.02 2.71
2964 5306 7.760794 GCAATCTTAATCAACAATGGATGAACA 59.239 33.333 0.00 0.00 29.02 3.18
2965 5307 7.760794 TGCAATCTTAATCAACAATGGATGAAC 59.239 33.333 0.00 0.00 29.02 3.18
2966 5308 7.760794 GTGCAATCTTAATCAACAATGGATGAA 59.239 33.333 0.00 0.00 29.02 2.57
2967 5309 7.259882 GTGCAATCTTAATCAACAATGGATGA 58.740 34.615 0.00 0.00 0.00 2.92
2968 5310 6.477688 GGTGCAATCTTAATCAACAATGGATG 59.522 38.462 0.00 0.00 0.00 3.51
2969 5311 6.407299 GGGTGCAATCTTAATCAACAATGGAT 60.407 38.462 0.00 0.00 0.00 3.41
2970 5312 5.105392 GGGTGCAATCTTAATCAACAATGGA 60.105 40.000 0.00 0.00 0.00 3.41
2971 5313 5.105228 AGGGTGCAATCTTAATCAACAATGG 60.105 40.000 0.00 0.00 0.00 3.16
2972 5314 5.969423 AGGGTGCAATCTTAATCAACAATG 58.031 37.500 0.00 0.00 0.00 2.82
2973 5315 7.118723 TCTAGGGTGCAATCTTAATCAACAAT 58.881 34.615 0.00 0.00 0.00 2.71
2974 5316 6.480763 TCTAGGGTGCAATCTTAATCAACAA 58.519 36.000 0.00 0.00 0.00 2.83
2975 5317 6.061022 TCTAGGGTGCAATCTTAATCAACA 57.939 37.500 0.00 0.00 0.00 3.33
2976 5318 7.934120 ACTATCTAGGGTGCAATCTTAATCAAC 59.066 37.037 0.00 0.00 0.00 3.18
2977 5319 8.034313 ACTATCTAGGGTGCAATCTTAATCAA 57.966 34.615 0.00 0.00 0.00 2.57
2978 5320 7.618019 ACTATCTAGGGTGCAATCTTAATCA 57.382 36.000 0.00 0.00 0.00 2.57
2979 5321 8.808092 ACTACTATCTAGGGTGCAATCTTAATC 58.192 37.037 0.00 0.00 0.00 1.75
2980 5322 8.728596 ACTACTATCTAGGGTGCAATCTTAAT 57.271 34.615 0.00 0.00 0.00 1.40
2981 5323 8.548880 AACTACTATCTAGGGTGCAATCTTAA 57.451 34.615 0.00 0.00 0.00 1.85
2982 5324 8.548880 AAACTACTATCTAGGGTGCAATCTTA 57.451 34.615 0.00 0.00 0.00 2.10
2983 5325 7.439108 AAACTACTATCTAGGGTGCAATCTT 57.561 36.000 0.00 0.00 0.00 2.40
2984 5326 7.439108 AAAACTACTATCTAGGGTGCAATCT 57.561 36.000 0.00 0.00 0.00 2.40
3080 5422 9.589111 AAACCGTAACTTCAAATTAAACATGTT 57.411 25.926 4.92 4.92 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.