Multiple sequence alignment - TraesCS2D01G510900

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BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G510900 chr2D 100.000 3558 0 0 1 3558 602684852 602688409 0.000000e+00 6571.0
1 TraesCS2D01G510900 chr2D 100.000 2047 0 0 3893 5939 602688744 602690790 0.000000e+00 3781.0
2 TraesCS2D01G510900 chr2D 90.720 1778 133 17 1791 3558 200258502 200256747 0.000000e+00 2340.0
3 TraesCS2D01G510900 chr2D 95.041 968 25 10 1788 2750 568132657 568133606 0.000000e+00 1500.0
4 TraesCS2D01G510900 chr2D 95.226 398 14 3 3895 4289 621745027 621744632 5.050000e-175 625.0
5 TraesCS2D01G510900 chr2D 79.545 396 75 6 1114 1506 528638291 528638683 1.630000e-70 278.0
6 TraesCS2D01G510900 chr2D 86.179 123 13 4 5023 5144 489404156 489404275 4.830000e-26 130.0
7 TraesCS2D01G510900 chr2D 90.769 65 6 0 5103 5167 2718749 2718813 2.950000e-13 87.9
8 TraesCS2D01G510900 chr2D 89.796 49 4 1 5296 5343 625153546 625153498 1.790000e-05 62.1
9 TraesCS2D01G510900 chr5D 94.107 1663 75 9 1810 3466 192260380 192262025 0.000000e+00 2507.0
10 TraesCS2D01G510900 chr5D 95.012 401 16 3 3893 4289 496198944 496199344 1.410000e-175 627.0
11 TraesCS2D01G510900 chr5D 80.030 676 111 16 1118 1784 564830844 564831504 4.160000e-131 479.0
12 TraesCS2D01G510900 chr5D 83.784 148 19 5 5345 5490 219776161 219776305 1.040000e-27 135.0
13 TraesCS2D01G510900 chr5D 81.098 164 23 6 5031 5190 281546085 281546244 2.250000e-24 124.0
14 TraesCS2D01G510900 chr5D 82.540 126 16 6 5387 5509 417456194 417456072 8.140000e-19 106.0
15 TraesCS2D01G510900 chr5D 95.238 42 0 2 5292 5331 62178311 62178270 1.380000e-06 65.8
16 TraesCS2D01G510900 chr5D 89.130 46 5 0 5870 5915 543493611 543493656 2.310000e-04 58.4
17 TraesCS2D01G510900 chr6A 90.500 1779 131 22 1791 3558 235486121 235487872 0.000000e+00 2314.0
18 TraesCS2D01G510900 chr6A 94.250 400 19 4 3893 4289 574399973 574399575 5.090000e-170 608.0
19 TraesCS2D01G510900 chr6A 81.218 197 25 11 5317 5510 80094093 80094280 1.330000e-31 148.0
20 TraesCS2D01G510900 chr6A 82.781 151 16 9 5344 5488 94152810 94152956 6.250000e-25 126.0
21 TraesCS2D01G510900 chr6A 80.000 160 27 5 5353 5509 420946652 420946809 4.860000e-21 113.0
22 TraesCS2D01G510900 chr6A 83.000 100 7 7 5096 5186 58904493 58904395 1.370000e-11 82.4
23 TraesCS2D01G510900 chr7B 89.545 1779 149 22 1791 3558 14705686 14703934 0.000000e+00 2220.0
24 TraesCS2D01G510900 chr7B 90.739 1177 55 22 1791 2962 71348542 71347415 0.000000e+00 1520.0
25 TraesCS2D01G510900 chr7B 78.802 217 30 14 4962 5172 11724003 11723797 1.340000e-26 132.0
26 TraesCS2D01G510900 chr7B 92.857 42 2 1 5296 5336 81637041 81637082 6.430000e-05 60.2
27 TraesCS2D01G510900 chr7B 100.000 32 0 0 5297 5328 115962769 115962738 6.430000e-05 60.2
28 TraesCS2D01G510900 chr6D 94.065 1449 64 11 2028 3472 49840997 49839567 0.000000e+00 2180.0
29 TraesCS2D01G510900 chr6D 90.464 755 62 5 1 748 447513006 447512255 0.000000e+00 987.0
30 TraesCS2D01G510900 chr6D 93.617 376 19 4 3893 4263 403799269 403798894 1.870000e-154 556.0
31 TraesCS2D01G510900 chr6D 86.735 98 10 3 5097 5192 262418475 262418571 8.140000e-19 106.0
32 TraesCS2D01G510900 chr6D 86.517 89 10 1 5397 5485 2365580 2365666 4.900000e-16 97.1
33 TraesCS2D01G510900 chr6D 76.923 156 26 9 5338 5487 322029567 322029718 4.930000e-11 80.5
34 TraesCS2D01G510900 chr6D 78.626 131 18 8 5359 5487 141632366 141632244 1.770000e-10 78.7
35 TraesCS2D01G510900 chr6D 84.000 75 9 3 5415 5488 354064245 354064173 1.070000e-07 69.4
36 TraesCS2D01G510900 chr5B 88.602 1781 157 25 1790 3558 36557370 36555624 0.000000e+00 2122.0
37 TraesCS2D01G510900 chr5B 90.072 1521 130 13 2042 3558 20655126 20656629 0.000000e+00 1953.0
38 TraesCS2D01G510900 chr5B 89.600 750 68 6 3 747 697246512 697247256 0.000000e+00 944.0
39 TraesCS2D01G510900 chr5B 88.655 714 75 3 38 746 441097200 441096488 0.000000e+00 865.0
40 TraesCS2D01G510900 chr5B 80.226 708 121 9 1082 1784 708953939 708954632 1.140000e-141 514.0
41 TraesCS2D01G510900 chr5B 75.245 408 82 13 4476 4867 708879500 708879096 6.120000e-40 176.0
42 TraesCS2D01G510900 chr5B 89.362 47 4 1 5297 5343 420179052 420179007 2.310000e-04 58.4
43 TraesCS2D01G510900 chr5B 89.130 46 5 0 5876 5921 696579192 696579237 2.310000e-04 58.4
44 TraesCS2D01G510900 chr5B 87.500 48 6 0 5296 5343 617713867 617713820 8.310000e-04 56.5
45 TraesCS2D01G510900 chr2B 88.009 1793 167 28 1791 3558 736893863 736892094 0.000000e+00 2076.0
46 TraesCS2D01G510900 chr2B 90.132 1520 129 13 2042 3558 673004468 673005969 0.000000e+00 1956.0
47 TraesCS2D01G510900 chr2B 96.171 914 32 1 880 1790 733047699 733048612 0.000000e+00 1491.0
48 TraesCS2D01G510900 chr2B 93.725 749 37 9 5124 5868 733050429 733051171 0.000000e+00 1114.0
49 TraesCS2D01G510900 chr2B 90.789 304 7 6 4785 5086 733050147 733050431 2.600000e-103 387.0
50 TraesCS2D01G510900 chr2B 95.122 246 9 1 4497 4742 733049906 733050148 9.340000e-103 385.0
51 TraesCS2D01G510900 chr2B 95.652 184 8 0 4431 4614 733036964 733037147 4.500000e-76 296.0
52 TraesCS2D01G510900 chr2B 95.238 168 8 0 4285 4452 733048614 733048781 3.530000e-67 267.0
53 TraesCS2D01G510900 chr2B 96.296 81 2 1 955 1034 733038882 733038962 1.340000e-26 132.0
54 TraesCS2D01G510900 chr2B 80.357 168 22 8 5023 5187 16120761 16120920 3.760000e-22 117.0
55 TraesCS2D01G510900 chr2B 94.737 76 3 1 5864 5939 733051380 733051454 3.760000e-22 117.0
56 TraesCS2D01G510900 chr2B 78.882 161 34 0 1166 1326 790850264 790850424 6.290000e-20 110.0
57 TraesCS2D01G510900 chr2A 91.684 1419 84 18 1791 3199 19352530 19351136 0.000000e+00 1936.0
58 TraesCS2D01G510900 chr2A 94.068 590 29 5 5124 5711 735313038 735313623 0.000000e+00 891.0
59 TraesCS2D01G510900 chr2A 93.865 163 9 1 5706 5868 735324741 735324902 1.650000e-60 244.0
60 TraesCS2D01G510900 chr2A 86.525 141 6 5 4947 5086 735312912 735313040 6.200000e-30 143.0
61 TraesCS2D01G510900 chr2A 94.737 76 3 1 5864 5939 735325093 735325167 3.760000e-22 117.0
62 TraesCS2D01G510900 chr7D 90.314 1466 107 23 2034 3494 179212915 179214350 0.000000e+00 1888.0
63 TraesCS2D01G510900 chr7D 94.514 401 18 2 3893 4289 486941310 486941710 3.040000e-172 616.0
64 TraesCS2D01G510900 chr7D 81.250 160 24 5 5341 5496 634790197 634790040 2.250000e-24 124.0
65 TraesCS2D01G510900 chr7D 79.851 134 22 5 5037 5167 623873160 623873291 6.340000e-15 93.5
66 TraesCS2D01G510900 chr7D 92.308 52 4 0 5870 5921 232942562 232942511 2.300000e-09 75.0
67 TraesCS2D01G510900 chr7D 89.286 56 3 2 5290 5342 553218058 553218003 3.840000e-07 67.6
68 TraesCS2D01G510900 chr7D 94.872 39 2 0 5106 5144 227383436 227383474 1.790000e-05 62.1
69 TraesCS2D01G510900 chr7D 81.333 75 12 1 5864 5938 501440072 501440144 6.430000e-05 60.2
70 TraesCS2D01G510900 chr7D 90.698 43 3 1 5098 5140 622183616 622183575 8.310000e-04 56.5
71 TraesCS2D01G510900 chr4A 90.973 1418 97 18 1791 3199 719416108 719414713 0.000000e+00 1881.0
72 TraesCS2D01G510900 chr4A 86.583 1349 128 26 1787 3124 510646269 510644963 0.000000e+00 1439.0
73 TraesCS2D01G510900 chr4A 82.635 167 21 7 5347 5509 598060402 598060564 2.230000e-29 141.0
74 TraesCS2D01G510900 chr4A 76.829 246 43 7 5612 5848 738959934 738959694 6.250000e-25 126.0
75 TraesCS2D01G510900 chr7A 90.493 1420 103 23 1791 3199 37927772 37929170 0.000000e+00 1845.0
76 TraesCS2D01G510900 chr7A 79.085 153 25 6 5023 5172 610493544 610493692 1.360000e-16 99.0
77 TraesCS2D01G510900 chr7A 84.932 73 8 2 5870 5939 105225227 105225155 2.970000e-08 71.3
78 TraesCS2D01G510900 chr7A 88.136 59 7 0 5870 5928 700122930 700122872 2.970000e-08 71.3
79 TraesCS2D01G510900 chr7A 86.207 58 7 1 5870 5927 220113451 220113507 1.790000e-05 62.1
80 TraesCS2D01G510900 chr1B 89.769 1427 109 24 1782 3199 684678678 684677280 0.000000e+00 1792.0
81 TraesCS2D01G510900 chr1B 91.468 1301 84 15 1792 3083 623610249 623611531 0.000000e+00 1762.0
82 TraesCS2D01G510900 chr1B 93.227 753 43 5 1 746 683457119 683457870 0.000000e+00 1101.0
83 TraesCS2D01G510900 chr1B 88.275 742 80 4 9 745 680780705 680779966 0.000000e+00 881.0
84 TraesCS2D01G510900 chr1B 87.717 749 86 3 3 746 394065247 394065994 0.000000e+00 869.0
85 TraesCS2D01G510900 chr1B 88.000 50 5 1 5296 5344 22906924 22906973 2.310000e-04 58.4
86 TraesCS2D01G510900 chr1B 87.037 54 4 2 5295 5345 476928442 476928389 2.310000e-04 58.4
87 TraesCS2D01G510900 chr1A 87.466 742 87 4 9 745 564124003 564124743 0.000000e+00 850.0
88 TraesCS2D01G510900 chr1A 93.216 398 22 4 3896 4289 543766723 543767119 1.110000e-161 580.0
89 TraesCS2D01G510900 chr1A 83.099 71 10 2 5116 5184 158524913 158524843 4.970000e-06 63.9
90 TraesCS2D01G510900 chr1A 94.444 36 0 2 5415 5448 449580755 449580790 3.000000e-03 54.7
91 TraesCS2D01G510900 chr1A 91.892 37 3 0 5296 5332 373763499 373763463 1.100000e-02 52.8
92 TraesCS2D01G510900 chr1A 100.000 28 0 0 5298 5325 513381882 513381909 1.100000e-02 52.8
93 TraesCS2D01G510900 chr4D 84.453 759 108 9 3 754 212157681 212158436 0.000000e+00 739.0
94 TraesCS2D01G510900 chr4D 94.763 401 17 3 3893 4289 279554511 279554911 6.540000e-174 621.0
95 TraesCS2D01G510900 chr4D 96.316 380 8 4 3915 4289 95828283 95827905 2.350000e-173 619.0
96 TraesCS2D01G510900 chr4D 94.554 404 15 4 3893 4289 339477267 339476864 8.460000e-173 617.0
97 TraesCS2D01G510900 chr4D 95.722 374 12 2 3920 4289 365180055 365179682 3.060000e-167 599.0
98 TraesCS2D01G510900 chr4D 95.430 372 13 4 3893 4260 348417340 348417711 1.840000e-164 590.0
99 TraesCS2D01G510900 chr4D 92.519 401 17 4 3893 4289 400895810 400895419 4.020000e-156 562.0
100 TraesCS2D01G510900 chr4D 93.514 370 20 3 3924 4289 220248445 220248814 1.130000e-151 547.0
101 TraesCS2D01G510900 chr4D 78.788 165 23 11 5004 5167 15158965 15159118 3.790000e-17 100.0
102 TraesCS2D01G510900 chr4D 78.667 150 17 11 5345 5492 434528125 434528261 1.060000e-12 86.1
103 TraesCS2D01G510900 chr4D 78.417 139 21 8 5039 5172 102739825 102739691 1.370000e-11 82.4
104 TraesCS2D01G510900 chr4D 88.000 50 4 1 5415 5464 469424458 469424505 2.310000e-04 58.4
105 TraesCS2D01G510900 chr4D 92.500 40 2 1 5357 5396 9079396 9079434 8.310000e-04 56.5
106 TraesCS2D01G510900 chr1D 84.043 752 108 9 3 746 330189 329442 0.000000e+00 713.0
107 TraesCS2D01G510900 chr1D 95.262 401 14 3 3893 4289 487586057 487586456 1.090000e-176 630.0
108 TraesCS2D01G510900 chr1D 94.514 401 18 2 3893 4289 482006397 482005997 3.040000e-172 616.0
109 TraesCS2D01G510900 chr1D 96.011 376 11 3 3918 4289 282972852 282972477 5.090000e-170 608.0
110 TraesCS2D01G510900 chr1D 93.766 401 20 3 3893 4289 395819036 395818637 1.100000e-166 597.0
111 TraesCS2D01G510900 chr1D 82.979 141 15 7 5005 5144 285606780 285606912 1.050000e-22 119.0
112 TraesCS2D01G510900 chr1D 83.099 71 9 2 5870 5939 442455414 442455346 1.790000e-05 62.1
113 TraesCS2D01G510900 chr1D 85.714 56 5 3 5090 5144 352937276 352937223 8.310000e-04 56.5
114 TraesCS2D01G510900 chrUn 96.482 398 9 3 3896 4289 67961191 67960795 0.000000e+00 652.0
115 TraesCS2D01G510900 chrUn 93.516 401 18 6 3896 4289 220214357 220214756 1.840000e-164 590.0
116 TraesCS2D01G510900 chrUn 94.901 353 15 2 3940 4289 51100635 51100987 3.130000e-152 549.0
117 TraesCS2D01G510900 chrUn 91.436 397 25 7 3893 4285 12533248 12533639 2.440000e-148 536.0
118 TraesCS2D01G510900 chrUn 92.973 370 20 5 3896 4260 89790971 89790603 8.760000e-148 534.0
119 TraesCS2D01G510900 chrUn 90.883 351 28 2 3943 4289 41162834 41162484 9.010000e-128 468.0
120 TraesCS2D01G510900 chrUn 90.988 344 26 3 3951 4289 259664735 259665078 5.420000e-125 459.0
121 TraesCS2D01G510900 chrUn 89.101 367 32 7 3900 4260 30146939 30147303 3.260000e-122 449.0
122 TraesCS2D01G510900 chrUn 89.714 350 29 5 3945 4289 401159470 401159817 1.960000e-119 440.0
123 TraesCS2D01G510900 chrUn 89.429 350 30 5 3945 4289 401153366 401153713 9.140000e-118 435.0
124 TraesCS2D01G510900 chrUn 86.534 401 41 11 3893 4285 81662704 81662309 4.250000e-116 429.0
125 TraesCS2D01G510900 chrUn 86.139 404 45 10 3893 4289 10617459 10617060 5.500000e-115 425.0
126 TraesCS2D01G510900 chrUn 94.231 52 3 0 5870 5921 291410206 291410257 4.930000e-11 80.5
127 TraesCS2D01G510900 chrUn 85.135 74 7 4 5392 5464 23552372 23552302 8.260000e-09 73.1
128 TraesCS2D01G510900 chrUn 97.297 37 1 0 5153 5189 86396668 86396704 4.970000e-06 63.9
129 TraesCS2D01G510900 chrUn 89.362 47 5 0 5132 5178 24295842 24295888 6.430000e-05 60.2
130 TraesCS2D01G510900 chrUn 89.362 47 5 0 5870 5916 31108742 31108788 6.430000e-05 60.2
131 TraesCS2D01G510900 chrUn 97.143 35 1 0 5298 5332 302070978 302071012 6.430000e-05 60.2
132 TraesCS2D01G510900 chrUn 97.143 35 1 0 5298 5332 302084647 302084681 6.430000e-05 60.2
133 TraesCS2D01G510900 chr3D 95.262 401 15 2 3893 4289 573831936 573832336 3.020000e-177 632.0
134 TraesCS2D01G510900 chr3D 94.059 404 17 4 3893 4289 246324398 246324801 1.830000e-169 606.0
135 TraesCS2D01G510900 chr3D 86.239 109 9 5 5383 5488 353985634 353985739 4.860000e-21 113.0
136 TraesCS2D01G510900 chr3D 80.263 152 24 6 5336 5485 12193338 12193485 6.290000e-20 110.0
137 TraesCS2D01G510900 chr3D 78.571 154 23 7 5363 5511 94737848 94737996 6.340000e-15 93.5
138 TraesCS2D01G510900 chr3D 90.411 73 4 3 5413 5484 120311952 120311882 6.340000e-15 93.5
139 TraesCS2D01G510900 chr3D 86.420 81 7 4 5413 5492 94555642 94555565 1.060000e-12 86.1
140 TraesCS2D01G510900 chr3D 86.111 72 8 2 5393 5464 111849033 111848964 6.380000e-10 76.8
141 TraesCS2D01G510900 chr3D 82.022 89 11 3 5108 5191 81734296 81734208 2.970000e-08 71.3
142 TraesCS2D01G510900 chr3D 96.875 32 1 0 5297 5328 579304677 579304646 3.000000e-03 54.7
143 TraesCS2D01G510900 chr3B 94.987 399 15 4 3896 4289 237326915 237326517 6.540000e-174 621.0
144 TraesCS2D01G510900 chr3B 89.583 48 5 0 5296 5343 201328171 201328124 1.790000e-05 62.1
145 TraesCS2D01G510900 chr3A 78.646 384 78 4 1125 1506 486223359 486222978 9.880000e-63 252.0
146 TraesCS2D01G510900 chr3A 87.931 58 6 1 5882 5939 556529896 556529840 3.840000e-07 67.6
147 TraesCS2D01G510900 chr6B 84.158 101 11 4 5092 5189 6171544 6171446 6.340000e-15 93.5
148 TraesCS2D01G510900 chr6B 87.097 62 7 1 5025 5085 237408894 237408955 1.070000e-07 69.4
149 TraesCS2D01G510900 chr5A 89.796 49 5 0 5295 5343 29176549 29176597 4.970000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G510900 chr2D 602684852 602690790 5938 False 5176.000000 6571 100.0000 1 5939 2 chr2D.!!$F5 5938
1 TraesCS2D01G510900 chr2D 200256747 200258502 1755 True 2340.000000 2340 90.7200 1791 3558 1 chr2D.!!$R1 1767
2 TraesCS2D01G510900 chr2D 568132657 568133606 949 False 1500.000000 1500 95.0410 1788 2750 1 chr2D.!!$F4 962
3 TraesCS2D01G510900 chr5D 192260380 192262025 1645 False 2507.000000 2507 94.1070 1810 3466 1 chr5D.!!$F1 1656
4 TraesCS2D01G510900 chr5D 564830844 564831504 660 False 479.000000 479 80.0300 1118 1784 1 chr5D.!!$F6 666
5 TraesCS2D01G510900 chr6A 235486121 235487872 1751 False 2314.000000 2314 90.5000 1791 3558 1 chr6A.!!$F3 1767
6 TraesCS2D01G510900 chr7B 14703934 14705686 1752 True 2220.000000 2220 89.5450 1791 3558 1 chr7B.!!$R2 1767
7 TraesCS2D01G510900 chr7B 71347415 71348542 1127 True 1520.000000 1520 90.7390 1791 2962 1 chr7B.!!$R3 1171
8 TraesCS2D01G510900 chr6D 49839567 49840997 1430 True 2180.000000 2180 94.0650 2028 3472 1 chr6D.!!$R1 1444
9 TraesCS2D01G510900 chr6D 447512255 447513006 751 True 987.000000 987 90.4640 1 748 1 chr6D.!!$R5 747
10 TraesCS2D01G510900 chr5B 36555624 36557370 1746 True 2122.000000 2122 88.6020 1790 3558 1 chr5B.!!$R1 1768
11 TraesCS2D01G510900 chr5B 20655126 20656629 1503 False 1953.000000 1953 90.0720 2042 3558 1 chr5B.!!$F1 1516
12 TraesCS2D01G510900 chr5B 697246512 697247256 744 False 944.000000 944 89.6000 3 747 1 chr5B.!!$F3 744
13 TraesCS2D01G510900 chr5B 441096488 441097200 712 True 865.000000 865 88.6550 38 746 1 chr5B.!!$R3 708
14 TraesCS2D01G510900 chr5B 708953939 708954632 693 False 514.000000 514 80.2260 1082 1784 1 chr5B.!!$F4 702
15 TraesCS2D01G510900 chr2B 736892094 736893863 1769 True 2076.000000 2076 88.0090 1791 3558 1 chr2B.!!$R1 1767
16 TraesCS2D01G510900 chr2B 673004468 673005969 1501 False 1956.000000 1956 90.1320 2042 3558 1 chr2B.!!$F2 1516
17 TraesCS2D01G510900 chr2B 733047699 733051454 3755 False 626.833333 1491 94.2970 880 5939 6 chr2B.!!$F5 5059
18 TraesCS2D01G510900 chr2B 733036964 733038962 1998 False 214.000000 296 95.9740 955 4614 2 chr2B.!!$F4 3659
19 TraesCS2D01G510900 chr2A 19351136 19352530 1394 True 1936.000000 1936 91.6840 1791 3199 1 chr2A.!!$R1 1408
20 TraesCS2D01G510900 chr2A 735312912 735313623 711 False 517.000000 891 90.2965 4947 5711 2 chr2A.!!$F1 764
21 TraesCS2D01G510900 chr7D 179212915 179214350 1435 False 1888.000000 1888 90.3140 2034 3494 1 chr7D.!!$F1 1460
22 TraesCS2D01G510900 chr4A 719414713 719416108 1395 True 1881.000000 1881 90.9730 1791 3199 1 chr4A.!!$R2 1408
23 TraesCS2D01G510900 chr4A 510644963 510646269 1306 True 1439.000000 1439 86.5830 1787 3124 1 chr4A.!!$R1 1337
24 TraesCS2D01G510900 chr7A 37927772 37929170 1398 False 1845.000000 1845 90.4930 1791 3199 1 chr7A.!!$F1 1408
25 TraesCS2D01G510900 chr1B 684677280 684678678 1398 True 1792.000000 1792 89.7690 1782 3199 1 chr1B.!!$R3 1417
26 TraesCS2D01G510900 chr1B 623610249 623611531 1282 False 1762.000000 1762 91.4680 1792 3083 1 chr1B.!!$F3 1291
27 TraesCS2D01G510900 chr1B 683457119 683457870 751 False 1101.000000 1101 93.2270 1 746 1 chr1B.!!$F4 745
28 TraesCS2D01G510900 chr1B 680779966 680780705 739 True 881.000000 881 88.2750 9 745 1 chr1B.!!$R2 736
29 TraesCS2D01G510900 chr1B 394065247 394065994 747 False 869.000000 869 87.7170 3 746 1 chr1B.!!$F2 743
30 TraesCS2D01G510900 chr1A 564124003 564124743 740 False 850.000000 850 87.4660 9 745 1 chr1A.!!$F4 736
31 TraesCS2D01G510900 chr4D 212157681 212158436 755 False 739.000000 739 84.4530 3 754 1 chr4D.!!$F3 751
32 TraesCS2D01G510900 chr1D 329442 330189 747 True 713.000000 713 84.0430 3 746 1 chr1D.!!$R1 743

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
699 705 0.033796 AAGGTGGCTGGTGGATGATG 60.034 55.0 0.00 0.0 0.00 3.07 F
855 861 0.458669 GGGCACGATAAGACTTCCGA 59.541 55.0 14.38 0.0 0.00 4.55 F
1020 1026 0.674581 TGTCATCGTCGAGGTACCGT 60.675 55.0 6.18 0.0 0.00 4.83 F
2700 2939 0.599204 GGTGCTGGACGAAGACGAAA 60.599 55.0 0.00 0.0 42.66 3.46 F
4076 4390 0.107268 ACCAAAAAGTAGACGCCGGT 59.893 50.0 1.90 0.0 0.00 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1532 1545 0.247736 GCCGATCACAGAACTCAGGT 59.752 55.000 0.00 0.00 0.00 4.00 R
2396 2455 0.776451 CAACTTCGTCTTCGACCGTG 59.224 55.000 0.00 0.00 46.03 4.94 R
2911 3213 4.640855 CACCGTGCGTCGACCACT 62.641 66.667 24.85 11.92 42.86 4.00 R
4247 4561 0.035036 GATCCTTAACCCTAGCCGCC 59.965 60.000 0.00 0.00 0.00 6.13 R
5635 8192 1.202475 GGGTGTTGTTGCGGAAAACAT 60.202 47.619 15.94 0.00 39.68 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.482386 GACTATATCTTATGTGCGCCGAA 58.518 43.478 4.18 0.00 0.00 4.30
83 84 4.020307 TGAGTGCACAGTCATTAATCCTCA 60.020 41.667 21.04 6.04 35.96 3.86
136 137 3.350833 GCAACAAGTCCATGGAGAAGAT 58.649 45.455 16.81 0.00 0.00 2.40
137 138 4.517285 GCAACAAGTCCATGGAGAAGATA 58.483 43.478 16.81 0.00 0.00 1.98
139 140 5.008415 GCAACAAGTCCATGGAGAAGATATG 59.992 44.000 16.81 9.80 0.00 1.78
140 141 5.965033 ACAAGTCCATGGAGAAGATATGT 57.035 39.130 16.81 9.58 0.00 2.29
141 142 6.319048 ACAAGTCCATGGAGAAGATATGTT 57.681 37.500 16.81 0.00 0.00 2.71
298 304 6.372659 GCTTTCCATGTAGAAACTCTCAATGA 59.627 38.462 0.00 0.00 32.45 2.57
344 350 4.608170 TGAAAAAGGGGGATTCATAGCT 57.392 40.909 0.00 0.00 0.00 3.32
348 354 0.475906 AGGGGGATTCATAGCTGCAC 59.524 55.000 1.02 0.00 0.00 4.57
461 467 4.335647 AAGCTGGTGGTGGAGGCG 62.336 66.667 0.00 0.00 0.00 5.52
479 485 1.064654 GCGGATTGCTTGGAAGTGATC 59.935 52.381 0.00 0.00 41.73 2.92
525 531 4.717629 CGACAGGAGCGGCGACAA 62.718 66.667 12.98 0.00 0.00 3.18
526 532 2.125512 GACAGGAGCGGCGACAAT 60.126 61.111 12.98 0.00 0.00 2.71
527 533 1.741770 GACAGGAGCGGCGACAATT 60.742 57.895 12.98 0.00 0.00 2.32
528 534 1.298859 GACAGGAGCGGCGACAATTT 61.299 55.000 12.98 0.00 0.00 1.82
529 535 0.036765 ACAGGAGCGGCGACAATTTA 60.037 50.000 12.98 0.00 0.00 1.40
530 536 1.299541 CAGGAGCGGCGACAATTTAT 58.700 50.000 12.98 0.00 0.00 1.40
531 537 1.003545 CAGGAGCGGCGACAATTTATG 60.004 52.381 12.98 0.00 0.00 1.90
532 538 0.317020 GGAGCGGCGACAATTTATGC 60.317 55.000 12.98 0.00 0.00 3.14
533 539 0.376852 GAGCGGCGACAATTTATGCA 59.623 50.000 12.98 0.00 0.00 3.96
534 540 0.378257 AGCGGCGACAATTTATGCAG 59.622 50.000 12.98 0.00 0.00 4.41
535 541 0.376852 GCGGCGACAATTTATGCAGA 59.623 50.000 12.98 0.00 0.00 4.26
536 542 1.856014 GCGGCGACAATTTATGCAGAC 60.856 52.381 12.98 0.00 0.00 3.51
537 543 1.665679 CGGCGACAATTTATGCAGACT 59.334 47.619 0.00 0.00 0.00 3.24
538 544 2.537529 CGGCGACAATTTATGCAGACTG 60.538 50.000 0.00 0.00 0.00 3.51
539 545 2.444351 GCGACAATTTATGCAGACTGC 58.556 47.619 20.86 20.86 45.29 4.40
555 561 7.171447 GCAGACTGCAATGTCTTAATAGTAG 57.829 40.000 22.62 0.00 44.01 2.57
556 562 6.201806 GCAGACTGCAATGTCTTAATAGTAGG 59.798 42.308 22.62 0.00 44.01 3.18
557 563 7.268586 CAGACTGCAATGTCTTAATAGTAGGT 58.731 38.462 5.90 0.00 44.01 3.08
558 564 7.766278 CAGACTGCAATGTCTTAATAGTAGGTT 59.234 37.037 5.90 0.00 44.01 3.50
559 565 8.978472 AGACTGCAATGTCTTAATAGTAGGTTA 58.022 33.333 2.87 0.00 44.01 2.85
560 566 9.765795 GACTGCAATGTCTTAATAGTAGGTTAT 57.234 33.333 0.00 0.00 34.39 1.89
568 574 9.632638 TGTCTTAATAGTAGGTTATACTTCGGT 57.367 33.333 0.00 0.00 0.00 4.69
569 575 9.890352 GTCTTAATAGTAGGTTATACTTCGGTG 57.110 37.037 0.00 0.00 0.00 4.94
570 576 9.632638 TCTTAATAGTAGGTTATACTTCGGTGT 57.367 33.333 0.00 0.00 0.00 4.16
571 577 9.890352 CTTAATAGTAGGTTATACTTCGGTGTC 57.110 37.037 0.00 0.00 0.00 3.67
572 578 9.632638 TTAATAGTAGGTTATACTTCGGTGTCT 57.367 33.333 0.00 0.00 0.00 3.41
573 579 8.530804 AATAGTAGGTTATACTTCGGTGTCTT 57.469 34.615 0.00 0.00 0.00 3.01
574 580 6.847421 AGTAGGTTATACTTCGGTGTCTTT 57.153 37.500 0.00 0.00 0.00 2.52
575 581 6.861144 AGTAGGTTATACTTCGGTGTCTTTC 58.139 40.000 0.00 0.00 0.00 2.62
576 582 5.733620 AGGTTATACTTCGGTGTCTTTCA 57.266 39.130 0.00 0.00 0.00 2.69
577 583 6.295719 AGGTTATACTTCGGTGTCTTTCAT 57.704 37.500 0.00 0.00 0.00 2.57
578 584 6.338937 AGGTTATACTTCGGTGTCTTTCATC 58.661 40.000 0.00 0.00 0.00 2.92
579 585 5.522824 GGTTATACTTCGGTGTCTTTCATCC 59.477 44.000 0.00 0.00 0.00 3.51
580 586 4.819105 ATACTTCGGTGTCTTTCATCCA 57.181 40.909 0.00 0.00 0.00 3.41
581 587 3.703001 ACTTCGGTGTCTTTCATCCAT 57.297 42.857 0.00 0.00 0.00 3.41
582 588 4.021102 ACTTCGGTGTCTTTCATCCATT 57.979 40.909 0.00 0.00 0.00 3.16
583 589 3.753272 ACTTCGGTGTCTTTCATCCATTG 59.247 43.478 0.00 0.00 0.00 2.82
584 590 2.083774 TCGGTGTCTTTCATCCATTGC 58.916 47.619 0.00 0.00 0.00 3.56
585 591 1.133025 CGGTGTCTTTCATCCATTGCC 59.867 52.381 0.00 0.00 0.00 4.52
586 592 1.478105 GGTGTCTTTCATCCATTGCCC 59.522 52.381 0.00 0.00 0.00 5.36
587 593 2.450476 GTGTCTTTCATCCATTGCCCT 58.550 47.619 0.00 0.00 0.00 5.19
588 594 3.620488 GTGTCTTTCATCCATTGCCCTA 58.380 45.455 0.00 0.00 0.00 3.53
589 595 3.629398 GTGTCTTTCATCCATTGCCCTAG 59.371 47.826 0.00 0.00 0.00 3.02
590 596 3.217626 GTCTTTCATCCATTGCCCTAGG 58.782 50.000 0.06 0.06 0.00 3.02
591 597 2.175499 TCTTTCATCCATTGCCCTAGGG 59.825 50.000 24.89 24.89 38.57 3.53
592 598 1.905839 TTCATCCATTGCCCTAGGGA 58.094 50.000 33.21 12.45 37.50 4.20
593 599 1.438469 TCATCCATTGCCCTAGGGAG 58.562 55.000 33.21 16.57 37.50 4.30
594 600 0.403271 CATCCATTGCCCTAGGGAGG 59.597 60.000 33.21 24.27 43.33 4.30
603 609 1.767759 CCCTAGGGAGGCAAATTGTG 58.232 55.000 24.99 0.00 42.21 3.33
604 610 1.005924 CCCTAGGGAGGCAAATTGTGT 59.994 52.381 24.99 0.00 42.21 3.72
605 611 2.369394 CCTAGGGAGGCAAATTGTGTC 58.631 52.381 0.00 0.00 35.54 3.67
613 619 4.025040 AGGCAAATTGTGTCTCTCATGA 57.975 40.909 0.00 0.00 37.84 3.07
614 620 4.008330 AGGCAAATTGTGTCTCTCATGAG 58.992 43.478 17.07 17.07 37.84 2.90
615 621 3.427233 GGCAAATTGTGTCTCTCATGAGC 60.427 47.826 18.36 4.87 40.03 4.26
616 622 3.439476 GCAAATTGTGTCTCTCATGAGCT 59.561 43.478 18.36 0.00 40.03 4.09
617 623 4.633126 GCAAATTGTGTCTCTCATGAGCTA 59.367 41.667 18.36 5.30 40.03 3.32
618 624 5.220624 GCAAATTGTGTCTCTCATGAGCTAG 60.221 44.000 18.36 11.24 40.03 3.42
619 625 3.516981 TTGTGTCTCTCATGAGCTAGC 57.483 47.619 18.36 6.62 40.03 3.42
620 626 2.732763 TGTGTCTCTCATGAGCTAGCT 58.267 47.619 19.45 19.45 40.03 3.32
621 627 3.891049 TGTGTCTCTCATGAGCTAGCTA 58.109 45.455 19.38 6.79 40.03 3.32
622 628 3.882288 TGTGTCTCTCATGAGCTAGCTAG 59.118 47.826 19.38 16.84 40.03 3.42
623 629 3.253188 GTGTCTCTCATGAGCTAGCTAGG 59.747 52.174 19.38 10.29 40.03 3.02
624 630 2.228822 GTCTCTCATGAGCTAGCTAGGC 59.771 54.545 19.38 8.10 40.03 3.93
625 631 2.108075 TCTCTCATGAGCTAGCTAGGCT 59.892 50.000 19.38 18.14 43.26 4.58
626 632 2.229543 CTCTCATGAGCTAGCTAGGCTG 59.770 54.545 19.38 12.49 40.40 4.85
627 633 1.273048 CTCATGAGCTAGCTAGGCTGG 59.727 57.143 19.38 4.65 40.10 4.85
632 638 2.731374 CTAGCTAGGCTGGCGGTC 59.269 66.667 17.53 0.00 40.10 4.79
633 639 1.830408 CTAGCTAGGCTGGCGGTCT 60.830 63.158 17.53 5.45 40.10 3.85
634 640 1.801309 CTAGCTAGGCTGGCGGTCTC 61.801 65.000 17.53 0.00 40.10 3.36
635 641 2.567664 TAGCTAGGCTGGCGGTCTCA 62.568 60.000 17.53 0.00 40.10 3.27
636 642 3.019003 GCTAGGCTGGCGGTCTCAA 62.019 63.158 2.33 0.00 0.00 3.02
637 643 1.596934 CTAGGCTGGCGGTCTCAAA 59.403 57.895 2.33 0.00 0.00 2.69
638 644 0.741221 CTAGGCTGGCGGTCTCAAAC 60.741 60.000 2.33 0.00 0.00 2.93
639 645 2.180159 TAGGCTGGCGGTCTCAAACC 62.180 60.000 2.33 0.00 45.45 3.27
640 646 2.032681 GCTGGCGGTCTCAAACCT 59.967 61.111 0.00 0.00 46.87 3.50
641 647 1.295423 GCTGGCGGTCTCAAACCTA 59.705 57.895 0.00 0.00 46.87 3.08
642 648 1.019805 GCTGGCGGTCTCAAACCTAC 61.020 60.000 0.00 0.00 46.87 3.18
643 649 0.391263 CTGGCGGTCTCAAACCTACC 60.391 60.000 0.00 0.00 46.87 3.18
644 650 1.078637 GGCGGTCTCAAACCTACCC 60.079 63.158 0.00 0.00 46.87 3.69
645 651 1.551019 GGCGGTCTCAAACCTACCCT 61.551 60.000 0.00 0.00 46.87 4.34
646 652 0.108281 GCGGTCTCAAACCTACCCTC 60.108 60.000 0.00 0.00 46.87 4.30
647 653 0.172803 CGGTCTCAAACCTACCCTCG 59.827 60.000 0.00 0.00 46.87 4.63
648 654 1.264295 GGTCTCAAACCTACCCTCGT 58.736 55.000 0.00 0.00 45.45 4.18
649 655 1.622312 GGTCTCAAACCTACCCTCGTT 59.378 52.381 0.00 0.00 45.45 3.85
650 656 2.612221 GGTCTCAAACCTACCCTCGTTG 60.612 54.545 0.00 0.00 45.45 4.10
651 657 2.036862 GTCTCAAACCTACCCTCGTTGT 59.963 50.000 0.00 0.00 0.00 3.32
652 658 2.036733 TCTCAAACCTACCCTCGTTGTG 59.963 50.000 0.00 0.00 0.00 3.33
653 659 1.071071 TCAAACCTACCCTCGTTGTGG 59.929 52.381 0.00 0.00 0.00 4.17
659 665 4.379174 CCCTCGTTGTGGGTTGAG 57.621 61.111 0.00 0.00 39.82 3.02
660 666 1.752198 CCCTCGTTGTGGGTTGAGA 59.248 57.895 0.00 0.00 39.82 3.27
661 667 0.107831 CCCTCGTTGTGGGTTGAGAA 59.892 55.000 0.00 0.00 39.82 2.87
662 668 1.476110 CCCTCGTTGTGGGTTGAGAAA 60.476 52.381 0.00 0.00 39.82 2.52
663 669 1.602377 CCTCGTTGTGGGTTGAGAAAC 59.398 52.381 0.00 0.00 0.00 2.78
664 670 1.602377 CTCGTTGTGGGTTGAGAAACC 59.398 52.381 0.00 0.00 42.09 3.27
668 674 4.889807 TGGGTTGAGAAACCACCG 57.110 55.556 9.69 0.00 45.21 4.94
669 675 1.149627 TGGGTTGAGAAACCACCGG 59.850 57.895 0.00 0.00 45.21 5.28
670 676 2.265904 GGGTTGAGAAACCACCGGC 61.266 63.158 0.00 0.00 44.60 6.13
671 677 1.527380 GGTTGAGAAACCACCGGCA 60.527 57.895 0.00 0.00 42.38 5.69
672 678 0.893727 GGTTGAGAAACCACCGGCAT 60.894 55.000 0.00 0.00 42.38 4.40
673 679 0.521735 GTTGAGAAACCACCGGCATC 59.478 55.000 0.00 0.00 0.00 3.91
674 680 0.400213 TTGAGAAACCACCGGCATCT 59.600 50.000 0.00 0.00 0.00 2.90
675 681 1.271856 TGAGAAACCACCGGCATCTA 58.728 50.000 0.00 0.00 0.00 1.98
676 682 1.837439 TGAGAAACCACCGGCATCTAT 59.163 47.619 0.00 0.00 0.00 1.98
677 683 2.238646 TGAGAAACCACCGGCATCTATT 59.761 45.455 0.00 0.00 0.00 1.73
678 684 2.614057 GAGAAACCACCGGCATCTATTG 59.386 50.000 0.00 0.00 0.00 1.90
679 685 2.026262 AGAAACCACCGGCATCTATTGT 60.026 45.455 0.00 0.00 0.00 2.71
680 686 3.199071 AGAAACCACCGGCATCTATTGTA 59.801 43.478 0.00 0.00 0.00 2.41
681 687 3.637911 AACCACCGGCATCTATTGTAA 57.362 42.857 0.00 0.00 0.00 2.41
682 688 3.194005 ACCACCGGCATCTATTGTAAG 57.806 47.619 0.00 0.00 0.00 2.34
683 689 2.158813 ACCACCGGCATCTATTGTAAGG 60.159 50.000 0.00 0.00 0.00 2.69
684 690 2.158813 CCACCGGCATCTATTGTAAGGT 60.159 50.000 0.00 0.00 0.00 3.50
685 691 2.872245 CACCGGCATCTATTGTAAGGTG 59.128 50.000 0.00 0.00 38.70 4.00
686 692 2.158813 ACCGGCATCTATTGTAAGGTGG 60.159 50.000 0.00 0.00 30.88 4.61
687 693 1.873591 CGGCATCTATTGTAAGGTGGC 59.126 52.381 0.89 0.89 46.74 5.01
688 694 3.214696 GGCATCTATTGTAAGGTGGCT 57.785 47.619 3.65 0.00 46.70 4.75
689 695 2.880890 GGCATCTATTGTAAGGTGGCTG 59.119 50.000 3.65 0.00 46.70 4.85
690 696 2.880890 GCATCTATTGTAAGGTGGCTGG 59.119 50.000 0.00 0.00 0.00 4.85
691 697 3.685550 GCATCTATTGTAAGGTGGCTGGT 60.686 47.826 0.00 0.00 0.00 4.00
692 698 3.627395 TCTATTGTAAGGTGGCTGGTG 57.373 47.619 0.00 0.00 0.00 4.17
693 699 2.238646 TCTATTGTAAGGTGGCTGGTGG 59.761 50.000 0.00 0.00 0.00 4.61
694 700 1.072266 ATTGTAAGGTGGCTGGTGGA 58.928 50.000 0.00 0.00 0.00 4.02
695 701 1.072266 TTGTAAGGTGGCTGGTGGAT 58.928 50.000 0.00 0.00 0.00 3.41
696 702 0.327924 TGTAAGGTGGCTGGTGGATG 59.672 55.000 0.00 0.00 0.00 3.51
697 703 0.618458 GTAAGGTGGCTGGTGGATGA 59.382 55.000 0.00 0.00 0.00 2.92
698 704 1.212935 GTAAGGTGGCTGGTGGATGAT 59.787 52.381 0.00 0.00 0.00 2.45
699 705 0.033796 AAGGTGGCTGGTGGATGATG 60.034 55.000 0.00 0.00 0.00 3.07
700 706 1.210204 AGGTGGCTGGTGGATGATGT 61.210 55.000 0.00 0.00 0.00 3.06
701 707 0.546122 GGTGGCTGGTGGATGATGTA 59.454 55.000 0.00 0.00 0.00 2.29
702 708 1.064758 GGTGGCTGGTGGATGATGTAA 60.065 52.381 0.00 0.00 0.00 2.41
703 709 2.017049 GTGGCTGGTGGATGATGTAAC 58.983 52.381 0.00 0.00 0.00 2.50
704 710 1.299541 GGCTGGTGGATGATGTAACG 58.700 55.000 0.00 0.00 0.00 3.18
705 711 1.299541 GCTGGTGGATGATGTAACGG 58.700 55.000 0.00 0.00 0.00 4.44
706 712 1.406887 GCTGGTGGATGATGTAACGGT 60.407 52.381 0.00 0.00 0.00 4.83
707 713 2.279741 CTGGTGGATGATGTAACGGTG 58.720 52.381 0.00 0.00 0.00 4.94
708 714 1.903183 TGGTGGATGATGTAACGGTGA 59.097 47.619 0.00 0.00 0.00 4.02
709 715 2.503765 TGGTGGATGATGTAACGGTGAT 59.496 45.455 0.00 0.00 0.00 3.06
710 716 3.054728 TGGTGGATGATGTAACGGTGATT 60.055 43.478 0.00 0.00 0.00 2.57
711 717 3.945285 GGTGGATGATGTAACGGTGATTT 59.055 43.478 0.00 0.00 0.00 2.17
712 718 5.120399 GGTGGATGATGTAACGGTGATTTA 58.880 41.667 0.00 0.00 0.00 1.40
713 719 5.587043 GGTGGATGATGTAACGGTGATTTAA 59.413 40.000 0.00 0.00 0.00 1.52
714 720 6.262273 GGTGGATGATGTAACGGTGATTTAAT 59.738 38.462 0.00 0.00 0.00 1.40
715 721 7.352739 GTGGATGATGTAACGGTGATTTAATC 58.647 38.462 0.00 0.00 0.00 1.75
716 722 7.226720 GTGGATGATGTAACGGTGATTTAATCT 59.773 37.037 6.50 0.00 0.00 2.40
717 723 8.425703 TGGATGATGTAACGGTGATTTAATCTA 58.574 33.333 6.50 0.00 0.00 1.98
718 724 9.268268 GGATGATGTAACGGTGATTTAATCTAA 57.732 33.333 6.50 0.00 0.00 2.10
727 733 8.904099 ACGGTGATTTAATCTAATAAAGAGGG 57.096 34.615 6.50 0.00 37.74 4.30
728 734 7.444487 ACGGTGATTTAATCTAATAAAGAGGGC 59.556 37.037 6.50 0.00 37.74 5.19
729 735 7.094762 CGGTGATTTAATCTAATAAAGAGGGCC 60.095 40.741 6.50 0.00 37.74 5.80
730 736 7.094762 GGTGATTTAATCTAATAAAGAGGGCCG 60.095 40.741 6.50 0.00 37.74 6.13
731 737 7.660208 GTGATTTAATCTAATAAAGAGGGCCGA 59.340 37.037 6.50 0.00 37.74 5.54
732 738 8.215050 TGATTTAATCTAATAAAGAGGGCCGAA 58.785 33.333 6.50 0.00 37.74 4.30
733 739 8.622948 ATTTAATCTAATAAAGAGGGCCGAAG 57.377 34.615 0.00 0.00 37.74 3.79
734 740 5.632034 AATCTAATAAAGAGGGCCGAAGT 57.368 39.130 0.00 0.00 37.74 3.01
735 741 5.632034 ATCTAATAAAGAGGGCCGAAGTT 57.368 39.130 0.00 0.00 37.74 2.66
736 742 5.431179 TCTAATAAAGAGGGCCGAAGTTT 57.569 39.130 0.00 0.00 0.00 2.66
737 743 5.425630 TCTAATAAAGAGGGCCGAAGTTTC 58.574 41.667 0.00 0.00 0.00 2.78
738 744 3.713826 ATAAAGAGGGCCGAAGTTTCA 57.286 42.857 0.00 0.00 0.00 2.69
739 745 2.358322 AAAGAGGGCCGAAGTTTCAA 57.642 45.000 0.00 0.00 0.00 2.69
740 746 2.358322 AAGAGGGCCGAAGTTTCAAA 57.642 45.000 0.00 0.00 0.00 2.69
741 747 2.358322 AGAGGGCCGAAGTTTCAAAA 57.642 45.000 0.00 0.00 0.00 2.44
742 748 2.661718 AGAGGGCCGAAGTTTCAAAAA 58.338 42.857 0.00 0.00 0.00 1.94
774 780 9.768662 ACGGACTACTTATTAAACAGAAGAAAA 57.231 29.630 0.00 0.00 0.00 2.29
813 819 5.532025 AAGAGTAAAAGAGAAAATCGCCG 57.468 39.130 0.00 0.00 0.00 6.46
814 820 3.371285 AGAGTAAAAGAGAAAATCGCCGC 59.629 43.478 0.00 0.00 0.00 6.53
815 821 3.071479 AGTAAAAGAGAAAATCGCCGCA 58.929 40.909 0.00 0.00 0.00 5.69
816 822 3.500680 AGTAAAAGAGAAAATCGCCGCAA 59.499 39.130 0.00 0.00 0.00 4.85
817 823 3.363341 AAAAGAGAAAATCGCCGCAAA 57.637 38.095 0.00 0.00 0.00 3.68
818 824 3.363341 AAAGAGAAAATCGCCGCAAAA 57.637 38.095 0.00 0.00 0.00 2.44
819 825 3.363341 AAGAGAAAATCGCCGCAAAAA 57.637 38.095 0.00 0.00 0.00 1.94
837 843 2.951457 AAAAATAAATCACCGGGCGG 57.049 45.000 6.32 0.00 42.03 6.13
838 844 1.107945 AAAATAAATCACCGGGCGGG 58.892 50.000 6.32 9.88 43.62 6.13
839 845 1.388837 AAATAAATCACCGGGCGGGC 61.389 55.000 11.50 0.00 40.62 6.13
840 846 2.559922 AATAAATCACCGGGCGGGCA 62.560 55.000 11.50 0.00 40.62 5.36
841 847 3.980442 TAAATCACCGGGCGGGCAC 62.980 63.158 11.50 0.00 40.62 5.01
849 855 2.588034 GGGCGGGCACGATAAGAC 60.588 66.667 15.48 0.00 44.60 3.01
850 856 2.499685 GGCGGGCACGATAAGACT 59.500 61.111 15.48 0.00 44.60 3.24
851 857 1.153429 GGCGGGCACGATAAGACTT 60.153 57.895 15.48 0.00 44.60 3.01
852 858 1.152383 GGCGGGCACGATAAGACTTC 61.152 60.000 15.48 0.00 44.60 3.01
853 859 1.152383 GCGGGCACGATAAGACTTCC 61.152 60.000 15.48 0.00 44.60 3.46
854 860 0.870307 CGGGCACGATAAGACTTCCG 60.870 60.000 0.00 7.97 44.60 4.30
855 861 0.458669 GGGCACGATAAGACTTCCGA 59.541 55.000 14.38 0.00 0.00 4.55
856 862 1.557651 GGCACGATAAGACTTCCGAC 58.442 55.000 14.38 7.59 0.00 4.79
857 863 1.189403 GCACGATAAGACTTCCGACG 58.811 55.000 14.38 8.58 0.00 5.12
858 864 1.467035 GCACGATAAGACTTCCGACGT 60.467 52.381 14.38 9.09 0.00 4.34
859 865 2.174764 CACGATAAGACTTCCGACGTG 58.825 52.381 14.38 15.22 42.04 4.49
860 866 2.079158 ACGATAAGACTTCCGACGTGA 58.921 47.619 14.38 0.00 0.00 4.35
861 867 2.681848 ACGATAAGACTTCCGACGTGAT 59.318 45.455 14.38 0.00 0.00 3.06
862 868 3.873361 ACGATAAGACTTCCGACGTGATA 59.127 43.478 14.38 0.00 0.00 2.15
863 869 4.514441 ACGATAAGACTTCCGACGTGATAT 59.486 41.667 14.38 0.00 0.00 1.63
864 870 5.698089 ACGATAAGACTTCCGACGTGATATA 59.302 40.000 14.38 0.00 0.00 0.86
865 871 6.370994 ACGATAAGACTTCCGACGTGATATAT 59.629 38.462 14.38 0.00 0.00 0.86
866 872 7.547019 ACGATAAGACTTCCGACGTGATATATA 59.453 37.037 14.38 0.00 0.00 0.86
867 873 7.845137 CGATAAGACTTCCGACGTGATATATAC 59.155 40.741 0.00 0.00 0.00 1.47
868 874 6.872628 AAGACTTCCGACGTGATATATACA 57.127 37.500 0.00 0.00 0.00 2.29
869 875 6.238610 AGACTTCCGACGTGATATATACAC 57.761 41.667 0.00 0.00 35.26 2.90
870 876 5.761726 AGACTTCCGACGTGATATATACACA 59.238 40.000 0.00 3.02 38.04 3.72
871 877 6.261603 AGACTTCCGACGTGATATATACACAA 59.738 38.462 0.00 2.75 38.04 3.33
872 878 6.798482 ACTTCCGACGTGATATATACACAAA 58.202 36.000 0.00 2.73 38.04 2.83
873 879 7.431249 ACTTCCGACGTGATATATACACAAAT 58.569 34.615 0.00 2.13 38.04 2.32
874 880 7.381408 ACTTCCGACGTGATATATACACAAATG 59.619 37.037 0.00 3.19 38.04 2.32
875 881 6.972722 TCCGACGTGATATATACACAAATGA 58.027 36.000 0.00 4.60 38.04 2.57
876 882 7.599171 TCCGACGTGATATATACACAAATGAT 58.401 34.615 0.00 0.00 38.04 2.45
877 883 8.085909 TCCGACGTGATATATACACAAATGATT 58.914 33.333 0.00 0.00 38.04 2.57
878 884 9.349145 CCGACGTGATATATACACAAATGATTA 57.651 33.333 0.00 0.00 38.04 1.75
887 893 8.955061 ATATACACAAATGATTAAATCGCTGC 57.045 30.769 0.00 0.00 0.00 5.25
1012 1018 1.153647 GGTGGCATGTCATCGTCGA 60.154 57.895 1.89 0.00 0.00 4.20
1020 1026 0.674581 TGTCATCGTCGAGGTACCGT 60.675 55.000 6.18 0.00 0.00 4.83
1025 1031 0.802222 TCGTCGAGGTACCGTAGTCG 60.802 60.000 13.57 13.57 0.00 4.18
1069 1075 3.103289 CTACGCGCAACAGCACGA 61.103 61.111 5.73 0.00 37.27 4.35
1076 1082 3.767230 CAACAGCACGAGCCGACG 61.767 66.667 0.00 0.00 43.56 5.12
1374 1383 2.417719 CCCTTCTTCAACCTCTCAACG 58.582 52.381 0.00 0.00 0.00 4.10
1431 1440 2.336478 CCACTGCGTCCTCGACTCT 61.336 63.158 0.00 0.00 39.71 3.24
1454 1463 2.303549 GACGGTATCCTGCTGCTGCT 62.304 60.000 17.00 0.00 40.48 4.24
1497 1510 1.221840 CCTCCTCCACCCATTCACG 59.778 63.158 0.00 0.00 0.00 4.35
1532 1545 1.710996 TTCCCGCCTCTCAAAACCCA 61.711 55.000 0.00 0.00 0.00 4.51
1575 1588 1.608590 ACATCGTTGGAAAGCAAGTGG 59.391 47.619 0.00 0.00 0.00 4.00
1654 1670 2.483583 AGTCGTCTCGCTCATGATTC 57.516 50.000 0.00 0.00 0.00 2.52
2369 2428 1.731969 GTAGACGAAGGCACGCGTT 60.732 57.895 10.22 0.00 43.23 4.84
2396 2455 2.203015 ATCACCGGGCATGCGTAC 60.203 61.111 12.44 3.49 0.00 3.67
2700 2939 0.599204 GGTGCTGGACGAAGACGAAA 60.599 55.000 0.00 0.00 42.66 3.46
3546 3860 1.077858 GAGTCCCGGTCGGAGTAGT 60.078 63.158 11.39 0.00 45.06 2.73
3971 4285 2.434359 CCGGGTCGGTGAAGAAGC 60.434 66.667 0.00 0.00 42.73 3.86
3972 4286 2.434359 CGGGTCGGTGAAGAAGCC 60.434 66.667 0.00 0.00 0.00 4.35
3977 4291 4.697756 CGGTGAAGAAGCCGGCCA 62.698 66.667 26.15 11.09 43.85 5.36
3978 4292 2.282180 GGTGAAGAAGCCGGCCAA 60.282 61.111 26.15 0.00 0.00 4.52
3979 4293 1.678970 GGTGAAGAAGCCGGCCAAT 60.679 57.895 26.15 10.30 0.00 3.16
3980 4294 1.657751 GGTGAAGAAGCCGGCCAATC 61.658 60.000 26.15 19.42 0.00 2.67
3981 4295 1.745115 TGAAGAAGCCGGCCAATCG 60.745 57.895 26.15 0.00 0.00 3.34
3982 4296 3.113386 GAAGAAGCCGGCCAATCGC 62.113 63.158 26.15 12.89 0.00 4.58
3992 4306 4.459331 CCAATCGCGCCGGTGTTG 62.459 66.667 17.91 12.99 0.00 3.33
3993 4307 4.459331 CAATCGCGCCGGTGTTGG 62.459 66.667 17.91 6.69 0.00 3.77
3994 4308 4.690719 AATCGCGCCGGTGTTGGA 62.691 61.111 17.91 12.10 0.00 3.53
3997 4311 4.728102 CGCGCCGGTGTTGGAGTA 62.728 66.667 17.91 0.00 0.00 2.59
3998 4312 2.357760 GCGCCGGTGTTGGAGTAA 60.358 61.111 17.91 0.00 0.00 2.24
3999 4313 2.388232 GCGCCGGTGTTGGAGTAAG 61.388 63.158 17.91 0.00 0.00 2.34
4000 4314 1.740296 CGCCGGTGTTGGAGTAAGG 60.740 63.158 6.91 0.00 0.00 2.69
4001 4315 2.038837 GCCGGTGTTGGAGTAAGGC 61.039 63.158 1.90 0.00 36.08 4.35
4002 4316 1.740296 CCGGTGTTGGAGTAAGGCG 60.740 63.158 0.00 0.00 0.00 5.52
4003 4317 2.388232 CGGTGTTGGAGTAAGGCGC 61.388 63.158 0.00 0.00 0.00 6.53
4004 4318 1.302192 GGTGTTGGAGTAAGGCGCA 60.302 57.895 10.83 0.00 0.00 6.09
4005 4319 1.574702 GGTGTTGGAGTAAGGCGCAC 61.575 60.000 10.83 0.00 0.00 5.34
4006 4320 1.666553 TGTTGGAGTAAGGCGCACG 60.667 57.895 10.83 0.00 0.00 5.34
4007 4321 2.047655 TTGGAGTAAGGCGCACGG 60.048 61.111 10.83 0.00 0.00 4.94
4008 4322 2.575893 TTGGAGTAAGGCGCACGGA 61.576 57.895 10.83 0.00 0.00 4.69
4009 4323 2.202756 GGAGTAAGGCGCACGGAG 60.203 66.667 10.83 0.00 0.00 4.63
4011 4325 1.516603 GAGTAAGGCGCACGGAGTC 60.517 63.158 10.83 0.00 41.61 3.36
4012 4326 2.879462 GTAAGGCGCACGGAGTCG 60.879 66.667 10.83 0.00 41.61 4.18
4013 4327 3.057548 TAAGGCGCACGGAGTCGA 61.058 61.111 10.83 0.00 41.61 4.20
4014 4328 3.332493 TAAGGCGCACGGAGTCGAC 62.332 63.158 10.83 7.70 41.61 4.20
4042 4356 3.861263 GGCGACGCAAACCGGATC 61.861 66.667 23.09 0.00 42.52 3.36
4043 4357 3.115892 GCGACGCAAACCGGATCA 61.116 61.111 16.42 0.00 42.52 2.92
4044 4358 2.776072 CGACGCAAACCGGATCAC 59.224 61.111 9.46 0.00 42.52 3.06
4045 4359 2.024868 CGACGCAAACCGGATCACA 61.025 57.895 9.46 0.00 42.52 3.58
4046 4360 1.358725 CGACGCAAACCGGATCACAT 61.359 55.000 9.46 0.00 42.52 3.21
4047 4361 1.647346 GACGCAAACCGGATCACATA 58.353 50.000 9.46 0.00 42.52 2.29
4048 4362 1.593006 GACGCAAACCGGATCACATAG 59.407 52.381 9.46 0.00 42.52 2.23
4049 4363 1.206132 ACGCAAACCGGATCACATAGA 59.794 47.619 9.46 0.00 42.52 1.98
4050 4364 1.593006 CGCAAACCGGATCACATAGAC 59.407 52.381 9.46 0.00 0.00 2.59
4051 4365 1.940613 GCAAACCGGATCACATAGACC 59.059 52.381 9.46 0.00 0.00 3.85
4052 4366 2.201732 CAAACCGGATCACATAGACCG 58.798 52.381 9.46 0.00 39.25 4.79
4056 4370 2.882927 CGGATCACATAGACCGGAAA 57.117 50.000 9.46 0.00 37.31 3.13
4057 4371 3.173668 CGGATCACATAGACCGGAAAA 57.826 47.619 9.46 0.00 37.31 2.29
4058 4372 2.864343 CGGATCACATAGACCGGAAAAC 59.136 50.000 9.46 0.00 37.31 2.43
4059 4373 3.203716 GGATCACATAGACCGGAAAACC 58.796 50.000 9.46 0.00 0.00 3.27
4060 4374 3.370103 GGATCACATAGACCGGAAAACCA 60.370 47.826 9.46 0.00 0.00 3.67
4061 4375 3.773418 TCACATAGACCGGAAAACCAA 57.227 42.857 9.46 0.00 0.00 3.67
4062 4376 4.088056 TCACATAGACCGGAAAACCAAA 57.912 40.909 9.46 0.00 0.00 3.28
4063 4377 4.462133 TCACATAGACCGGAAAACCAAAA 58.538 39.130 9.46 0.00 0.00 2.44
4064 4378 4.888239 TCACATAGACCGGAAAACCAAAAA 59.112 37.500 9.46 0.00 0.00 1.94
4065 4379 5.009210 TCACATAGACCGGAAAACCAAAAAG 59.991 40.000 9.46 0.00 0.00 2.27
4066 4380 4.891168 ACATAGACCGGAAAACCAAAAAGT 59.109 37.500 9.46 0.00 0.00 2.66
4067 4381 6.016943 CACATAGACCGGAAAACCAAAAAGTA 60.017 38.462 9.46 0.00 0.00 2.24
4068 4382 6.206048 ACATAGACCGGAAAACCAAAAAGTAG 59.794 38.462 9.46 0.00 0.00 2.57
4069 4383 4.784177 AGACCGGAAAACCAAAAAGTAGA 58.216 39.130 9.46 0.00 0.00 2.59
4070 4384 4.577693 AGACCGGAAAACCAAAAAGTAGAC 59.422 41.667 9.46 0.00 0.00 2.59
4071 4385 3.313249 ACCGGAAAACCAAAAAGTAGACG 59.687 43.478 9.46 0.00 0.00 4.18
4072 4386 3.294102 CGGAAAACCAAAAAGTAGACGC 58.706 45.455 0.00 0.00 0.00 5.19
4073 4387 3.635331 GGAAAACCAAAAAGTAGACGCC 58.365 45.455 0.00 0.00 0.00 5.68
4074 4388 3.294102 GAAAACCAAAAAGTAGACGCCG 58.706 45.455 0.00 0.00 0.00 6.46
4075 4389 1.232119 AACCAAAAAGTAGACGCCGG 58.768 50.000 0.00 0.00 0.00 6.13
4076 4390 0.107268 ACCAAAAAGTAGACGCCGGT 59.893 50.000 1.90 0.00 0.00 5.28
4077 4391 0.794473 CCAAAAAGTAGACGCCGGTC 59.206 55.000 1.90 0.00 43.76 4.79
4078 4392 1.504359 CAAAAAGTAGACGCCGGTCA 58.496 50.000 1.90 0.00 45.92 4.02
4079 4393 1.868498 CAAAAAGTAGACGCCGGTCAA 59.132 47.619 1.90 0.00 45.92 3.18
4080 4394 2.243602 AAAAGTAGACGCCGGTCAAA 57.756 45.000 1.90 0.00 45.92 2.69
4081 4395 1.792006 AAAGTAGACGCCGGTCAAAG 58.208 50.000 1.90 0.00 45.92 2.77
4082 4396 0.669625 AAGTAGACGCCGGTCAAAGC 60.670 55.000 1.90 0.00 45.92 3.51
4098 4412 3.812019 GCGACCGGCGAGAGAGAA 61.812 66.667 20.06 0.00 44.57 2.87
4099 4413 2.875485 CGACCGGCGAGAGAGAAA 59.125 61.111 9.30 0.00 44.57 2.52
4100 4414 1.433879 CGACCGGCGAGAGAGAAAT 59.566 57.895 9.30 0.00 44.57 2.17
4101 4415 0.592754 CGACCGGCGAGAGAGAAATC 60.593 60.000 9.30 0.00 44.57 2.17
4102 4416 0.249114 GACCGGCGAGAGAGAAATCC 60.249 60.000 9.30 0.00 0.00 3.01
4103 4417 1.299468 CCGGCGAGAGAGAAATCCG 60.299 63.158 9.30 0.00 36.90 4.18
4104 4418 1.299468 CGGCGAGAGAGAAATCCGG 60.299 63.158 0.00 0.00 33.85 5.14
4105 4419 1.725557 CGGCGAGAGAGAAATCCGGA 61.726 60.000 6.61 6.61 33.85 5.14
4106 4420 0.676736 GGCGAGAGAGAAATCCGGAT 59.323 55.000 12.38 12.38 0.00 4.18
4107 4421 1.336424 GGCGAGAGAGAAATCCGGATC 60.336 57.143 19.43 7.26 0.00 3.36
4108 4422 1.338337 GCGAGAGAGAAATCCGGATCA 59.662 52.381 19.43 0.00 0.00 2.92
4109 4423 2.223829 GCGAGAGAGAAATCCGGATCAA 60.224 50.000 19.43 0.00 0.00 2.57
4110 4424 3.738281 GCGAGAGAGAAATCCGGATCAAA 60.738 47.826 19.43 0.00 0.00 2.69
4111 4425 4.047822 CGAGAGAGAAATCCGGATCAAAG 58.952 47.826 19.43 0.00 0.00 2.77
4112 4426 4.376146 GAGAGAGAAATCCGGATCAAAGG 58.624 47.826 19.43 0.00 0.00 3.11
4113 4427 4.033709 AGAGAGAAATCCGGATCAAAGGA 58.966 43.478 19.43 6.32 41.30 3.36
4115 4429 4.967036 AGAGAAATCCGGATCAAAGGATC 58.033 43.478 19.43 9.21 45.78 3.36
4140 4454 3.342377 AAAAAGACTCTCTAGGGCAGC 57.658 47.619 0.00 0.00 0.00 5.25
4141 4455 1.199615 AAAGACTCTCTAGGGCAGCC 58.800 55.000 1.26 1.26 0.00 4.85
4142 4456 1.040339 AAGACTCTCTAGGGCAGCCG 61.040 60.000 5.00 0.00 0.00 5.52
4143 4457 2.443016 ACTCTCTAGGGCAGCCGG 60.443 66.667 5.00 0.00 0.00 6.13
4144 4458 3.922640 CTCTCTAGGGCAGCCGGC 61.923 72.222 21.89 21.89 43.74 6.13
4172 4486 3.073101 GGCGGACGAACCCTAGGT 61.073 66.667 8.29 0.00 37.65 3.08
4173 4487 1.754234 GGCGGACGAACCCTAGGTA 60.754 63.158 8.29 0.00 33.12 3.08
4174 4488 1.435105 GCGGACGAACCCTAGGTAC 59.565 63.158 8.29 0.00 33.12 3.34
4175 4489 1.723870 CGGACGAACCCTAGGTACG 59.276 63.158 8.29 12.32 33.12 3.67
4176 4490 1.718757 CGGACGAACCCTAGGTACGG 61.719 65.000 18.63 3.39 33.12 4.02
4178 4492 2.009424 GACGAACCCTAGGTACGGGC 62.009 65.000 18.63 9.95 46.04 6.13
4179 4493 2.810403 GAACCCTAGGTACGGGCG 59.190 66.667 8.29 0.00 46.04 6.13
4180 4494 2.761213 AACCCTAGGTACGGGCGG 60.761 66.667 8.29 0.00 46.04 6.13
4210 4524 4.873129 CGGCGGTCATGGAGGTCG 62.873 72.222 0.00 0.00 0.00 4.79
4211 4525 3.458163 GGCGGTCATGGAGGTCGA 61.458 66.667 0.00 0.00 0.00 4.20
4212 4526 2.202756 GCGGTCATGGAGGTCGAC 60.203 66.667 7.13 7.13 0.00 4.20
4213 4527 2.494918 CGGTCATGGAGGTCGACC 59.505 66.667 27.67 27.67 44.79 4.79
4214 4528 2.494918 GGTCATGGAGGTCGACCG 59.505 66.667 28.26 14.22 39.86 4.79
4215 4529 2.202756 GTCATGGAGGTCGACCGC 60.203 66.667 28.12 28.12 42.08 5.68
4261 4575 4.165486 GGCGGCGGCTAGGGTTAA 62.165 66.667 27.22 0.00 39.81 2.01
4262 4576 2.588034 GCGGCGGCTAGGGTTAAG 60.588 66.667 9.78 0.00 35.83 1.85
4263 4577 2.108362 CGGCGGCTAGGGTTAAGG 59.892 66.667 7.61 0.00 0.00 2.69
4264 4578 2.428925 CGGCGGCTAGGGTTAAGGA 61.429 63.158 7.61 0.00 0.00 3.36
4265 4579 1.755393 CGGCGGCTAGGGTTAAGGAT 61.755 60.000 7.61 0.00 0.00 3.24
4266 4580 0.035036 GGCGGCTAGGGTTAAGGATC 59.965 60.000 0.00 0.00 0.00 3.36
4267 4581 0.319641 GCGGCTAGGGTTAAGGATCG 60.320 60.000 0.00 0.00 0.00 3.69
4268 4582 1.325355 CGGCTAGGGTTAAGGATCGA 58.675 55.000 0.00 0.00 0.00 3.59
4269 4583 1.000496 CGGCTAGGGTTAAGGATCGAC 60.000 57.143 0.00 0.00 0.00 4.20
4270 4584 2.317973 GGCTAGGGTTAAGGATCGACT 58.682 52.381 0.00 0.00 0.00 4.18
4271 4585 2.699321 GGCTAGGGTTAAGGATCGACTT 59.301 50.000 0.00 0.00 34.52 3.01
4272 4586 3.492829 GGCTAGGGTTAAGGATCGACTTG 60.493 52.174 0.00 0.00 32.02 3.16
4273 4587 2.693267 AGGGTTAAGGATCGACTTGC 57.307 50.000 0.00 0.00 32.02 4.01
4274 4588 1.134788 AGGGTTAAGGATCGACTTGCG 60.135 52.381 0.00 0.00 42.69 4.85
4286 4600 4.224715 TCGACTTGCGATAGATACCAAG 57.775 45.455 0.00 0.00 45.59 3.61
4412 4726 2.669434 CCGACACCACTTATTTGTACCG 59.331 50.000 0.00 0.00 0.00 4.02
4433 4747 2.027192 GTCTGGTAGAATGTGCCCAAGA 60.027 50.000 0.00 0.00 0.00 3.02
4455 5884 5.600484 AGAGATTCTGGTGGTCAGTATAAGG 59.400 44.000 0.00 0.00 43.76 2.69
4536 5965 1.802636 GACGACATGCATTGGTGGG 59.197 57.895 0.00 0.00 0.00 4.61
4671 6100 2.511373 CTCGGCAGCGGCACAATA 60.511 61.111 11.88 0.00 43.71 1.90
4695 6124 4.672409 TGTCGCCAGCAATAGATATATCG 58.328 43.478 7.08 0.00 0.00 2.92
4704 6133 9.971922 CCAGCAATAGATATATCGATGTATGAA 57.028 33.333 18.15 7.31 0.00 2.57
4728 6157 3.264193 TGTCAGGTCCTTGTAGCATCATT 59.736 43.478 0.00 0.00 0.00 2.57
4743 6172 9.995003 TGTAGCATCATTTGTCATATATACACA 57.005 29.630 0.00 0.00 0.00 3.72
4751 6744 9.955208 CATTTGTCATATATACACATGTTGCTT 57.045 29.630 0.00 0.00 32.75 3.91
4755 6748 7.494298 TGTCATATATACACATGTTGCTTTCGT 59.506 33.333 0.00 0.00 0.00 3.85
4756 6749 8.974408 GTCATATATACACATGTTGCTTTCGTA 58.026 33.333 0.00 0.00 0.00 3.43
4761 6754 5.493133 ACACATGTTGCTTTCGTAAAAGA 57.507 34.783 0.00 0.00 43.90 2.52
4765 6758 5.009610 ACATGTTGCTTTCGTAAAAGATGGT 59.990 36.000 0.00 0.00 43.90 3.55
4766 6759 4.854399 TGTTGCTTTCGTAAAAGATGGTG 58.146 39.130 2.21 0.00 43.90 4.17
4767 6760 4.576873 TGTTGCTTTCGTAAAAGATGGTGA 59.423 37.500 2.21 0.00 43.90 4.02
4768 6761 5.147162 GTTGCTTTCGTAAAAGATGGTGAG 58.853 41.667 2.21 0.00 43.90 3.51
4769 6762 4.385825 TGCTTTCGTAAAAGATGGTGAGT 58.614 39.130 2.21 0.00 43.90 3.41
4771 6764 4.451096 GCTTTCGTAAAAGATGGTGAGTGA 59.549 41.667 2.21 0.00 43.90 3.41
4775 6768 4.039973 TCGTAAAAGATGGTGAGTGACCTT 59.960 41.667 0.00 0.00 46.32 3.50
4780 6773 4.170468 AGATGGTGAGTGACCTTTTGTT 57.830 40.909 0.00 0.00 46.32 2.83
4781 6774 4.536765 AGATGGTGAGTGACCTTTTGTTT 58.463 39.130 0.00 0.00 46.32 2.83
4783 6776 5.422012 AGATGGTGAGTGACCTTTTGTTTTT 59.578 36.000 0.00 0.00 46.32 1.94
4812 6805 6.102468 TCCACCATTATTCACCCTGATGATAA 59.898 38.462 0.00 0.00 0.00 1.75
4813 6806 6.950041 CCACCATTATTCACCCTGATGATAAT 59.050 38.462 0.00 0.00 0.00 1.28
4814 6807 7.121759 CCACCATTATTCACCCTGATGATAATC 59.878 40.741 0.00 0.00 0.00 1.75
4815 6808 7.666804 CACCATTATTCACCCTGATGATAATCA 59.333 37.037 0.00 0.00 0.00 2.57
4833 7051 9.135189 TGATAATCATTCTTTTCCCCACAATAG 57.865 33.333 0.00 0.00 0.00 1.73
4901 7119 5.447818 GGAACAAAGGAGAAATAGCATGTCG 60.448 44.000 0.00 0.00 0.00 4.35
4975 7193 3.655810 GAGACGCAGGAGGCCACAG 62.656 68.421 5.01 0.00 40.31 3.66
5245 7796 7.330700 GCGAATCAAAAGGACCATATTGAAAAA 59.669 33.333 9.72 0.00 35.62 1.94
5246 7797 8.647226 CGAATCAAAAGGACCATATTGAAAAAC 58.353 33.333 9.72 3.54 35.62 2.43
5323 7874 4.523943 ACATGACACATGTGGTAAGCAATT 59.476 37.500 28.64 5.13 34.19 2.32
5529 8086 3.542969 ACTGGGGAAAAGCATACCTTT 57.457 42.857 0.00 0.00 45.49 3.11
5613 8170 8.817100 GTGTTTCCTCTTTTGTAATTTTTCCTG 58.183 33.333 0.00 0.00 0.00 3.86
5617 8174 7.734942 TCCTCTTTTGTAATTTTTCCTGCAAT 58.265 30.769 0.00 0.00 0.00 3.56
5635 8192 3.927758 GCAATATCATGTGTGCTGCAAAA 59.072 39.130 2.77 0.00 34.13 2.44
5779 8375 2.793278 AAAAAGTCGGCAACATCACC 57.207 45.000 0.00 0.00 0.00 4.02
5799 8395 6.744112 TCACCTATGTTGTAAAAGGCTTTTG 58.256 36.000 30.27 15.24 34.19 2.44
5836 8432 3.446799 TGCAAAGAATTCTGCAACACAC 58.553 40.909 17.33 0.66 45.25 3.82
5868 8464 4.267536 CAATGATGAGGACAGTGTTGGAT 58.732 43.478 0.00 0.00 0.00 3.41
5905 8713 5.185157 GCGTAAGGACTTCTGCAACACAG 62.185 52.174 0.00 0.00 43.14 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 4.449081 CCACCATACATACCAAATCCCCAT 60.449 45.833 0.00 0.00 0.00 4.00
178 184 4.215185 TCTTTCTTGCATGCGTGTAATTCA 59.785 37.500 14.09 0.00 29.41 2.57
344 350 3.740764 GCTCAAGTTTTTCATTGGGTGCA 60.741 43.478 0.00 0.00 0.00 4.57
348 354 4.449743 CACATGCTCAAGTTTTTCATTGGG 59.550 41.667 0.00 0.00 0.00 4.12
461 467 3.507233 TGTTGATCACTTCCAAGCAATCC 59.493 43.478 0.00 0.00 0.00 3.01
497 503 2.885644 CCTGTCGCCGTGAATCCG 60.886 66.667 0.00 0.00 0.00 4.18
534 540 9.765795 ATAACCTACTATTAAGACATTGCAGTC 57.234 33.333 0.00 0.00 38.81 3.51
542 548 9.632638 ACCGAAGTATAACCTACTATTAAGACA 57.367 33.333 0.00 0.00 0.00 3.41
543 549 9.890352 CACCGAAGTATAACCTACTATTAAGAC 57.110 37.037 0.00 0.00 0.00 3.01
544 550 9.632638 ACACCGAAGTATAACCTACTATTAAGA 57.367 33.333 0.00 0.00 0.00 2.10
545 551 9.890352 GACACCGAAGTATAACCTACTATTAAG 57.110 37.037 0.00 0.00 0.00 1.85
546 552 9.632638 AGACACCGAAGTATAACCTACTATTAA 57.367 33.333 0.00 0.00 0.00 1.40
547 553 9.632638 AAGACACCGAAGTATAACCTACTATTA 57.367 33.333 0.00 0.00 0.00 0.98
548 554 8.530804 AAGACACCGAAGTATAACCTACTATT 57.469 34.615 0.00 0.00 0.00 1.73
549 555 8.530804 AAAGACACCGAAGTATAACCTACTAT 57.469 34.615 0.00 0.00 0.00 2.12
550 556 7.611467 TGAAAGACACCGAAGTATAACCTACTA 59.389 37.037 0.00 0.00 0.00 1.82
551 557 6.435277 TGAAAGACACCGAAGTATAACCTACT 59.565 38.462 0.00 0.00 0.00 2.57
552 558 6.624423 TGAAAGACACCGAAGTATAACCTAC 58.376 40.000 0.00 0.00 0.00 3.18
553 559 6.839124 TGAAAGACACCGAAGTATAACCTA 57.161 37.500 0.00 0.00 0.00 3.08
554 560 5.733620 TGAAAGACACCGAAGTATAACCT 57.266 39.130 0.00 0.00 0.00 3.50
555 561 5.522824 GGATGAAAGACACCGAAGTATAACC 59.477 44.000 0.00 0.00 0.00 2.85
556 562 6.103997 TGGATGAAAGACACCGAAGTATAAC 58.896 40.000 0.00 0.00 0.00 1.89
557 563 6.288941 TGGATGAAAGACACCGAAGTATAA 57.711 37.500 0.00 0.00 0.00 0.98
558 564 5.925506 TGGATGAAAGACACCGAAGTATA 57.074 39.130 0.00 0.00 0.00 1.47
559 565 4.819105 TGGATGAAAGACACCGAAGTAT 57.181 40.909 0.00 0.00 0.00 2.12
560 566 4.819105 ATGGATGAAAGACACCGAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
561 567 3.703001 ATGGATGAAAGACACCGAAGT 57.297 42.857 0.00 0.00 0.00 3.01
562 568 3.426695 GCAATGGATGAAAGACACCGAAG 60.427 47.826 0.00 0.00 0.00 3.79
563 569 2.487762 GCAATGGATGAAAGACACCGAA 59.512 45.455 0.00 0.00 0.00 4.30
564 570 2.083774 GCAATGGATGAAAGACACCGA 58.916 47.619 0.00 0.00 0.00 4.69
565 571 1.133025 GGCAATGGATGAAAGACACCG 59.867 52.381 0.00 0.00 0.00 4.94
566 572 1.478105 GGGCAATGGATGAAAGACACC 59.522 52.381 0.00 0.00 0.00 4.16
567 573 2.450476 AGGGCAATGGATGAAAGACAC 58.550 47.619 0.00 0.00 0.00 3.67
568 574 2.905415 AGGGCAATGGATGAAAGACA 57.095 45.000 0.00 0.00 0.00 3.41
569 575 3.217626 CCTAGGGCAATGGATGAAAGAC 58.782 50.000 0.00 0.00 0.00 3.01
570 576 2.175499 CCCTAGGGCAATGGATGAAAGA 59.825 50.000 16.90 0.00 0.00 2.52
571 577 2.175499 TCCCTAGGGCAATGGATGAAAG 59.825 50.000 24.42 0.00 34.68 2.62
572 578 2.175499 CTCCCTAGGGCAATGGATGAAA 59.825 50.000 24.42 0.00 34.68 2.69
573 579 1.776667 CTCCCTAGGGCAATGGATGAA 59.223 52.381 24.42 0.11 34.68 2.57
574 580 1.438469 CTCCCTAGGGCAATGGATGA 58.562 55.000 24.42 0.93 34.68 2.92
575 581 0.403271 CCTCCCTAGGGCAATGGATG 59.597 60.000 24.42 0.00 39.48 3.51
576 582 2.874260 CCTCCCTAGGGCAATGGAT 58.126 57.895 24.42 0.00 39.48 3.41
577 583 4.418820 CCTCCCTAGGGCAATGGA 57.581 61.111 24.42 3.40 39.48 3.41
584 590 1.005924 ACACAATTTGCCTCCCTAGGG 59.994 52.381 23.22 23.22 43.87 3.53
585 591 2.025887 AGACACAATTTGCCTCCCTAGG 60.026 50.000 0.06 0.06 46.76 3.02
586 592 3.054802 AGAGACACAATTTGCCTCCCTAG 60.055 47.826 0.00 0.00 0.00 3.02
587 593 2.912956 AGAGACACAATTTGCCTCCCTA 59.087 45.455 0.00 0.00 0.00 3.53
588 594 1.707427 AGAGACACAATTTGCCTCCCT 59.293 47.619 0.00 0.00 0.00 4.20
589 595 2.087646 GAGAGACACAATTTGCCTCCC 58.912 52.381 0.00 0.00 0.00 4.30
590 596 2.783135 TGAGAGACACAATTTGCCTCC 58.217 47.619 0.00 0.00 0.00 4.30
591 597 4.005650 TCATGAGAGACACAATTTGCCTC 58.994 43.478 0.00 1.69 0.00 4.70
592 598 4.008330 CTCATGAGAGACACAATTTGCCT 58.992 43.478 18.34 0.00 44.98 4.75
593 599 3.427233 GCTCATGAGAGACACAATTTGCC 60.427 47.826 27.04 0.00 44.98 4.52
594 600 3.439476 AGCTCATGAGAGACACAATTTGC 59.561 43.478 27.04 6.76 44.98 3.68
595 601 5.220624 GCTAGCTCATGAGAGACACAATTTG 60.221 44.000 27.04 0.00 44.98 2.32
596 602 4.874966 GCTAGCTCATGAGAGACACAATTT 59.125 41.667 27.04 0.88 44.98 1.82
597 603 4.161942 AGCTAGCTCATGAGAGACACAATT 59.838 41.667 27.04 0.00 44.98 2.32
598 604 3.705579 AGCTAGCTCATGAGAGACACAAT 59.294 43.478 27.04 0.86 44.98 2.71
599 605 3.095332 AGCTAGCTCATGAGAGACACAA 58.905 45.455 27.04 1.89 44.98 3.33
600 606 2.732763 AGCTAGCTCATGAGAGACACA 58.267 47.619 27.04 2.91 44.98 3.72
601 607 3.253188 CCTAGCTAGCTCATGAGAGACAC 59.747 52.174 27.04 8.03 44.98 3.67
602 608 3.485394 CCTAGCTAGCTCATGAGAGACA 58.515 50.000 27.04 6.38 44.98 3.41
603 609 2.228822 GCCTAGCTAGCTCATGAGAGAC 59.771 54.545 27.04 11.60 44.98 3.36
604 610 2.108075 AGCCTAGCTAGCTCATGAGAGA 59.892 50.000 27.04 11.55 39.89 3.10
605 611 2.229543 CAGCCTAGCTAGCTCATGAGAG 59.770 54.545 27.04 16.20 40.12 3.20
606 612 2.237643 CAGCCTAGCTAGCTCATGAGA 58.762 52.381 27.04 5.37 38.95 3.27
607 613 1.273048 CCAGCCTAGCTAGCTCATGAG 59.727 57.143 23.26 18.84 38.95 2.90
608 614 1.336131 CCAGCCTAGCTAGCTCATGA 58.664 55.000 23.26 1.96 38.95 3.07
609 615 0.320596 GCCAGCCTAGCTAGCTCATG 60.321 60.000 23.26 14.98 39.96 3.07
610 616 1.814772 CGCCAGCCTAGCTAGCTCAT 61.815 60.000 23.26 0.00 40.85 2.90
611 617 2.493651 CGCCAGCCTAGCTAGCTCA 61.494 63.158 23.26 7.11 40.85 4.26
612 618 2.338257 CGCCAGCCTAGCTAGCTC 59.662 66.667 23.26 7.22 40.85 4.09
613 619 3.230245 CCGCCAGCCTAGCTAGCT 61.230 66.667 23.12 23.12 40.85 3.32
614 620 3.507597 GACCGCCAGCCTAGCTAGC 62.508 68.421 15.74 6.62 39.72 3.42
615 621 1.801309 GAGACCGCCAGCCTAGCTAG 61.801 65.000 14.20 14.20 36.40 3.42
616 622 1.828660 GAGACCGCCAGCCTAGCTA 60.829 63.158 0.00 0.00 36.40 3.32
617 623 3.151022 GAGACCGCCAGCCTAGCT 61.151 66.667 0.00 0.00 40.77 3.32
618 624 2.521958 TTTGAGACCGCCAGCCTAGC 62.522 60.000 0.00 0.00 0.00 3.42
619 625 0.741221 GTTTGAGACCGCCAGCCTAG 60.741 60.000 0.00 0.00 0.00 3.02
620 626 1.295423 GTTTGAGACCGCCAGCCTA 59.705 57.895 0.00 0.00 0.00 3.93
621 627 2.032681 GTTTGAGACCGCCAGCCT 59.967 61.111 0.00 0.00 0.00 4.58
622 628 3.056328 GGTTTGAGACCGCCAGCC 61.056 66.667 0.00 0.00 39.00 4.85
630 636 2.036862 ACAACGAGGGTAGGTTTGAGAC 59.963 50.000 0.00 0.00 0.00 3.36
631 637 2.036733 CACAACGAGGGTAGGTTTGAGA 59.963 50.000 0.00 0.00 0.00 3.27
632 638 2.413837 CACAACGAGGGTAGGTTTGAG 58.586 52.381 0.00 0.00 0.00 3.02
633 639 1.071071 CCACAACGAGGGTAGGTTTGA 59.929 52.381 0.00 0.00 0.00 2.69
634 640 1.519408 CCACAACGAGGGTAGGTTTG 58.481 55.000 0.00 0.00 0.00 2.93
635 641 0.399075 CCCACAACGAGGGTAGGTTT 59.601 55.000 0.00 0.00 41.61 3.27
636 642 2.063774 CCCACAACGAGGGTAGGTT 58.936 57.895 0.00 0.00 41.61 3.50
637 643 3.801620 CCCACAACGAGGGTAGGT 58.198 61.111 0.00 0.00 41.61 3.08
643 649 1.602377 GTTTCTCAACCCACAACGAGG 59.398 52.381 0.00 0.00 0.00 4.63
644 650 1.602377 GGTTTCTCAACCCACAACGAG 59.398 52.381 0.00 0.00 46.38 4.18
645 651 1.670791 GGTTTCTCAACCCACAACGA 58.329 50.000 0.00 0.00 46.38 3.85
654 660 0.521735 GATGCCGGTGGTTTCTCAAC 59.478 55.000 1.90 0.00 0.00 3.18
655 661 0.400213 AGATGCCGGTGGTTTCTCAA 59.600 50.000 1.90 0.00 0.00 3.02
656 662 1.271856 TAGATGCCGGTGGTTTCTCA 58.728 50.000 1.90 0.00 0.00 3.27
657 663 2.614057 CAATAGATGCCGGTGGTTTCTC 59.386 50.000 1.90 0.00 0.00 2.87
658 664 2.026262 ACAATAGATGCCGGTGGTTTCT 60.026 45.455 1.90 1.17 0.00 2.52
659 665 2.365582 ACAATAGATGCCGGTGGTTTC 58.634 47.619 1.90 0.00 0.00 2.78
660 666 2.507407 ACAATAGATGCCGGTGGTTT 57.493 45.000 1.90 0.00 0.00 3.27
661 667 3.541632 CTTACAATAGATGCCGGTGGTT 58.458 45.455 1.90 0.00 0.00 3.67
662 668 2.158813 CCTTACAATAGATGCCGGTGGT 60.159 50.000 1.90 0.00 0.00 4.16
663 669 2.158813 ACCTTACAATAGATGCCGGTGG 60.159 50.000 1.90 0.00 0.00 4.61
664 670 2.872245 CACCTTACAATAGATGCCGGTG 59.128 50.000 1.90 0.00 37.48 4.94
665 671 2.158813 CCACCTTACAATAGATGCCGGT 60.159 50.000 1.90 0.00 0.00 5.28
666 672 2.494059 CCACCTTACAATAGATGCCGG 58.506 52.381 0.00 0.00 0.00 6.13
667 673 1.873591 GCCACCTTACAATAGATGCCG 59.126 52.381 0.00 0.00 0.00 5.69
668 674 2.880890 CAGCCACCTTACAATAGATGCC 59.119 50.000 0.00 0.00 0.00 4.40
669 675 2.880890 CCAGCCACCTTACAATAGATGC 59.119 50.000 0.00 0.00 0.00 3.91
670 676 3.879295 CACCAGCCACCTTACAATAGATG 59.121 47.826 0.00 0.00 0.00 2.90
671 677 3.117888 CCACCAGCCACCTTACAATAGAT 60.118 47.826 0.00 0.00 0.00 1.98
672 678 2.238646 CCACCAGCCACCTTACAATAGA 59.761 50.000 0.00 0.00 0.00 1.98
673 679 2.238646 TCCACCAGCCACCTTACAATAG 59.761 50.000 0.00 0.00 0.00 1.73
674 680 2.270858 TCCACCAGCCACCTTACAATA 58.729 47.619 0.00 0.00 0.00 1.90
675 681 1.072266 TCCACCAGCCACCTTACAAT 58.928 50.000 0.00 0.00 0.00 2.71
676 682 1.072266 ATCCACCAGCCACCTTACAA 58.928 50.000 0.00 0.00 0.00 2.41
677 683 0.327924 CATCCACCAGCCACCTTACA 59.672 55.000 0.00 0.00 0.00 2.41
678 684 0.618458 TCATCCACCAGCCACCTTAC 59.382 55.000 0.00 0.00 0.00 2.34
679 685 1.212688 CATCATCCACCAGCCACCTTA 59.787 52.381 0.00 0.00 0.00 2.69
680 686 0.033796 CATCATCCACCAGCCACCTT 60.034 55.000 0.00 0.00 0.00 3.50
681 687 1.210204 ACATCATCCACCAGCCACCT 61.210 55.000 0.00 0.00 0.00 4.00
682 688 0.546122 TACATCATCCACCAGCCACC 59.454 55.000 0.00 0.00 0.00 4.61
683 689 2.017049 GTTACATCATCCACCAGCCAC 58.983 52.381 0.00 0.00 0.00 5.01
684 690 1.406751 CGTTACATCATCCACCAGCCA 60.407 52.381 0.00 0.00 0.00 4.75
685 691 1.299541 CGTTACATCATCCACCAGCC 58.700 55.000 0.00 0.00 0.00 4.85
686 692 1.299541 CCGTTACATCATCCACCAGC 58.700 55.000 0.00 0.00 0.00 4.85
687 693 2.093711 TCACCGTTACATCATCCACCAG 60.094 50.000 0.00 0.00 0.00 4.00
688 694 1.903183 TCACCGTTACATCATCCACCA 59.097 47.619 0.00 0.00 0.00 4.17
689 695 2.684001 TCACCGTTACATCATCCACC 57.316 50.000 0.00 0.00 0.00 4.61
690 696 6.671614 TTAAATCACCGTTACATCATCCAC 57.328 37.500 0.00 0.00 0.00 4.02
691 697 7.279615 AGATTAAATCACCGTTACATCATCCA 58.720 34.615 0.00 0.00 0.00 3.41
692 698 7.730364 AGATTAAATCACCGTTACATCATCC 57.270 36.000 0.00 0.00 0.00 3.51
701 707 9.338622 CCCTCTTTATTAGATTAAATCACCGTT 57.661 33.333 0.00 0.00 30.92 4.44
702 708 7.444487 GCCCTCTTTATTAGATTAAATCACCGT 59.556 37.037 0.00 0.00 30.92 4.83
703 709 7.094762 GGCCCTCTTTATTAGATTAAATCACCG 60.095 40.741 0.00 0.00 30.92 4.94
704 710 7.094762 CGGCCCTCTTTATTAGATTAAATCACC 60.095 40.741 0.00 0.00 30.92 4.02
705 711 7.660208 TCGGCCCTCTTTATTAGATTAAATCAC 59.340 37.037 0.00 0.00 30.92 3.06
706 712 7.741785 TCGGCCCTCTTTATTAGATTAAATCA 58.258 34.615 0.00 0.00 30.92 2.57
707 713 8.617290 TTCGGCCCTCTTTATTAGATTAAATC 57.383 34.615 0.00 0.00 30.92 2.17
708 714 8.218488 ACTTCGGCCCTCTTTATTAGATTAAAT 58.782 33.333 0.00 0.00 30.92 1.40
709 715 7.571025 ACTTCGGCCCTCTTTATTAGATTAAA 58.429 34.615 0.00 0.00 30.92 1.52
710 716 7.133133 ACTTCGGCCCTCTTTATTAGATTAA 57.867 36.000 0.00 0.00 30.92 1.40
711 717 6.742559 ACTTCGGCCCTCTTTATTAGATTA 57.257 37.500 0.00 0.00 30.92 1.75
712 718 5.632034 ACTTCGGCCCTCTTTATTAGATT 57.368 39.130 0.00 0.00 30.92 2.40
713 719 5.632034 AACTTCGGCCCTCTTTATTAGAT 57.368 39.130 0.00 0.00 30.92 1.98
714 720 5.046159 TGAAACTTCGGCCCTCTTTATTAGA 60.046 40.000 0.00 0.00 0.00 2.10
715 721 5.183228 TGAAACTTCGGCCCTCTTTATTAG 58.817 41.667 0.00 0.00 0.00 1.73
716 722 5.168647 TGAAACTTCGGCCCTCTTTATTA 57.831 39.130 0.00 0.00 0.00 0.98
717 723 4.028993 TGAAACTTCGGCCCTCTTTATT 57.971 40.909 0.00 0.00 0.00 1.40
718 724 3.713826 TGAAACTTCGGCCCTCTTTAT 57.286 42.857 0.00 0.00 0.00 1.40
719 725 3.495434 TTGAAACTTCGGCCCTCTTTA 57.505 42.857 0.00 0.00 0.00 1.85
720 726 2.358322 TTGAAACTTCGGCCCTCTTT 57.642 45.000 0.00 0.00 0.00 2.52
721 727 2.358322 TTTGAAACTTCGGCCCTCTT 57.642 45.000 0.00 0.00 0.00 2.85
722 728 2.358322 TTTTGAAACTTCGGCCCTCT 57.642 45.000 0.00 0.00 0.00 3.69
748 754 9.768662 TTTTCTTCTGTTTAATAAGTAGTCCGT 57.231 29.630 0.00 0.00 0.00 4.69
788 794 6.856426 CGGCGATTTTCTCTTTTACTCTTTTT 59.144 34.615 0.00 0.00 0.00 1.94
789 795 6.371389 CGGCGATTTTCTCTTTTACTCTTTT 58.629 36.000 0.00 0.00 0.00 2.27
790 796 5.617087 GCGGCGATTTTCTCTTTTACTCTTT 60.617 40.000 12.98 0.00 0.00 2.52
791 797 4.142881 GCGGCGATTTTCTCTTTTACTCTT 60.143 41.667 12.98 0.00 0.00 2.85
792 798 3.371285 GCGGCGATTTTCTCTTTTACTCT 59.629 43.478 12.98 0.00 0.00 3.24
793 799 3.124636 TGCGGCGATTTTCTCTTTTACTC 59.875 43.478 12.98 0.00 0.00 2.59
794 800 3.071479 TGCGGCGATTTTCTCTTTTACT 58.929 40.909 12.98 0.00 0.00 2.24
795 801 3.465122 TGCGGCGATTTTCTCTTTTAC 57.535 42.857 12.98 0.00 0.00 2.01
796 802 4.491234 TTTGCGGCGATTTTCTCTTTTA 57.509 36.364 12.98 0.00 0.00 1.52
797 803 3.363341 TTTGCGGCGATTTTCTCTTTT 57.637 38.095 12.98 0.00 0.00 2.27
798 804 3.363341 TTTTGCGGCGATTTTCTCTTT 57.637 38.095 12.98 0.00 0.00 2.52
799 805 3.363341 TTTTTGCGGCGATTTTCTCTT 57.637 38.095 12.98 0.00 0.00 2.85
818 824 1.478916 CCCGCCCGGTGATTTATTTTT 59.521 47.619 0.00 0.00 0.00 1.94
819 825 1.107945 CCCGCCCGGTGATTTATTTT 58.892 50.000 0.00 0.00 0.00 1.82
820 826 1.388837 GCCCGCCCGGTGATTTATTT 61.389 55.000 0.00 0.00 0.00 1.40
821 827 1.826487 GCCCGCCCGGTGATTTATT 60.826 57.895 0.00 0.00 0.00 1.40
822 828 2.203294 GCCCGCCCGGTGATTTAT 60.203 61.111 0.00 0.00 0.00 1.40
823 829 3.718395 TGCCCGCCCGGTGATTTA 61.718 61.111 0.00 0.00 0.00 1.40
831 837 4.215742 TCTTATCGTGCCCGCCCG 62.216 66.667 0.00 0.00 0.00 6.13
832 838 2.588034 GTCTTATCGTGCCCGCCC 60.588 66.667 0.00 0.00 0.00 6.13
833 839 1.152383 GAAGTCTTATCGTGCCCGCC 61.152 60.000 0.00 0.00 0.00 6.13
834 840 1.152383 GGAAGTCTTATCGTGCCCGC 61.152 60.000 0.00 0.00 0.00 6.13
835 841 0.870307 CGGAAGTCTTATCGTGCCCG 60.870 60.000 0.00 0.00 0.00 6.13
836 842 0.458669 TCGGAAGTCTTATCGTGCCC 59.541 55.000 7.42 0.00 0.00 5.36
837 843 1.557651 GTCGGAAGTCTTATCGTGCC 58.442 55.000 7.42 0.00 0.00 5.01
838 844 1.189403 CGTCGGAAGTCTTATCGTGC 58.811 55.000 7.42 0.00 0.00 5.34
839 845 2.159612 TCACGTCGGAAGTCTTATCGTG 60.160 50.000 17.34 17.34 45.10 4.35
840 846 2.079158 TCACGTCGGAAGTCTTATCGT 58.921 47.619 0.00 3.84 0.00 3.73
841 847 2.819422 TCACGTCGGAAGTCTTATCG 57.181 50.000 0.00 2.44 0.00 2.92
842 848 8.663025 TGTATATATCACGTCGGAAGTCTTATC 58.337 37.037 0.00 0.00 0.00 1.75
843 849 8.449397 GTGTATATATCACGTCGGAAGTCTTAT 58.551 37.037 0.00 0.00 0.00 1.73
844 850 7.442062 TGTGTATATATCACGTCGGAAGTCTTA 59.558 37.037 0.00 0.00 38.48 2.10
845 851 6.261603 TGTGTATATATCACGTCGGAAGTCTT 59.738 38.462 0.00 0.00 38.48 3.01
846 852 5.761726 TGTGTATATATCACGTCGGAAGTCT 59.238 40.000 0.00 0.00 38.48 3.24
847 853 5.993891 TGTGTATATATCACGTCGGAAGTC 58.006 41.667 0.00 0.00 38.48 3.01
848 854 6.381481 TTGTGTATATATCACGTCGGAAGT 57.619 37.500 0.00 0.00 38.48 3.01
849 855 7.593644 TCATTTGTGTATATATCACGTCGGAAG 59.406 37.037 0.00 0.00 38.48 3.46
850 856 7.427214 TCATTTGTGTATATATCACGTCGGAA 58.573 34.615 0.00 0.00 38.48 4.30
851 857 6.972722 TCATTTGTGTATATATCACGTCGGA 58.027 36.000 0.00 0.00 38.48 4.55
852 858 7.812309 ATCATTTGTGTATATATCACGTCGG 57.188 36.000 0.00 0.00 38.48 4.79
862 868 8.023128 GGCAGCGATTTAATCATTTGTGTATAT 58.977 33.333 5.76 0.00 0.00 0.86
863 869 7.359595 GGCAGCGATTTAATCATTTGTGTATA 58.640 34.615 5.76 0.00 0.00 1.47
864 870 6.208644 GGCAGCGATTTAATCATTTGTGTAT 58.791 36.000 5.76 0.00 0.00 2.29
865 871 5.577835 GGCAGCGATTTAATCATTTGTGTA 58.422 37.500 5.76 0.00 0.00 2.90
866 872 4.423732 GGCAGCGATTTAATCATTTGTGT 58.576 39.130 5.76 0.00 0.00 3.72
867 873 3.483196 CGGCAGCGATTTAATCATTTGTG 59.517 43.478 5.76 0.00 0.00 3.33
868 874 3.128589 ACGGCAGCGATTTAATCATTTGT 59.871 39.130 5.76 0.00 0.00 2.83
869 875 3.694734 ACGGCAGCGATTTAATCATTTG 58.305 40.909 5.76 1.66 0.00 2.32
870 876 4.104776 CAACGGCAGCGATTTAATCATTT 58.895 39.130 5.76 0.00 0.00 2.32
871 877 3.489059 CCAACGGCAGCGATTTAATCATT 60.489 43.478 5.76 0.00 0.00 2.57
872 878 2.033299 CCAACGGCAGCGATTTAATCAT 59.967 45.455 5.76 0.00 0.00 2.45
873 879 1.400142 CCAACGGCAGCGATTTAATCA 59.600 47.619 5.76 0.00 0.00 2.57
874 880 1.668751 TCCAACGGCAGCGATTTAATC 59.331 47.619 0.00 0.00 0.00 1.75
875 881 1.400494 GTCCAACGGCAGCGATTTAAT 59.600 47.619 0.00 0.00 0.00 1.40
876 882 0.800012 GTCCAACGGCAGCGATTTAA 59.200 50.000 0.00 0.00 0.00 1.52
877 883 0.036765 AGTCCAACGGCAGCGATTTA 60.037 50.000 0.00 0.00 0.00 1.40
878 884 0.889186 AAGTCCAACGGCAGCGATTT 60.889 50.000 0.00 0.00 0.00 2.17
887 893 2.076863 GGTCTTCATCAAGTCCAACGG 58.923 52.381 0.00 0.00 37.66 4.44
1012 1018 1.885871 GGTTGCGACTACGGTACCT 59.114 57.895 10.90 0.00 40.15 3.08
1020 1026 4.752879 GCTGGGCGGTTGCGACTA 62.753 66.667 3.59 0.00 44.10 2.59
1076 1082 3.866582 CATCGGAGACCCTGCCCC 61.867 72.222 0.00 0.00 42.51 5.80
1290 1299 1.072678 CTCGGGCAGCATCATCCAT 59.927 57.895 0.00 0.00 0.00 3.41
1335 1344 1.600916 GACGAACCCCTGCAGCTTT 60.601 57.895 8.66 0.00 0.00 3.51
1355 1364 2.417719 CCGTTGAGAGGTTGAAGAAGG 58.582 52.381 0.00 0.00 0.00 3.46
1431 1440 0.596577 GCAGCAGGATACCGTCGATA 59.403 55.000 0.00 0.00 37.17 2.92
1532 1545 0.247736 GCCGATCACAGAACTCAGGT 59.752 55.000 0.00 0.00 0.00 4.00
1626 1642 1.136774 CGAGACGACTTCATCCGCA 59.863 57.895 0.00 0.00 0.00 5.69
1654 1670 2.045340 CCAACCGTAAGCCCCCAG 60.045 66.667 0.00 0.00 0.00 4.45
2300 2359 2.307309 ACGCGTCGTCAACACCATG 61.307 57.895 5.58 0.00 33.69 3.66
2380 2439 3.696676 TGTACGCATGCCCGGTGA 61.697 61.111 13.15 0.00 0.00 4.02
2396 2455 0.776451 CAACTTCGTCTTCGACCGTG 59.224 55.000 0.00 0.00 46.03 4.94
2911 3213 4.640855 CACCGTGCGTCGACCACT 62.641 66.667 24.85 11.92 42.86 4.00
3130 3438 1.349627 CCGTAGTGTCGCGATACGT 59.650 57.895 28.55 20.28 44.19 3.57
3290 3600 3.423154 CGCAAGCCCCGTGAAGAC 61.423 66.667 0.00 0.00 0.00 3.01
3955 4269 2.434359 GGCTTCTTCACCGACCCG 60.434 66.667 0.00 0.00 0.00 5.28
3961 4275 1.657751 GATTGGCCGGCTTCTTCACC 61.658 60.000 28.56 7.32 0.00 4.02
3962 4276 1.803289 GATTGGCCGGCTTCTTCAC 59.197 57.895 28.56 8.18 0.00 3.18
3963 4277 1.745115 CGATTGGCCGGCTTCTTCA 60.745 57.895 28.56 12.88 0.00 3.02
3964 4278 3.102097 CGATTGGCCGGCTTCTTC 58.898 61.111 28.56 16.61 0.00 2.87
3965 4279 3.134127 GCGATTGGCCGGCTTCTT 61.134 61.111 28.56 9.04 34.80 2.52
3975 4289 4.459331 CAACACCGGCGCGATTGG 62.459 66.667 12.10 10.62 0.00 3.16
3976 4290 4.459331 CCAACACCGGCGCGATTG 62.459 66.667 12.10 4.78 0.00 2.67
3977 4291 4.690719 TCCAACACCGGCGCGATT 62.691 61.111 12.10 0.00 0.00 3.34
3980 4294 4.728102 TACTCCAACACCGGCGCG 62.728 66.667 0.00 0.00 0.00 6.86
3981 4295 2.357760 TTACTCCAACACCGGCGC 60.358 61.111 0.00 0.00 0.00 6.53
3982 4296 1.740296 CCTTACTCCAACACCGGCG 60.740 63.158 0.00 0.00 0.00 6.46
3983 4297 2.038837 GCCTTACTCCAACACCGGC 61.039 63.158 0.00 0.00 0.00 6.13
3984 4298 1.740296 CGCCTTACTCCAACACCGG 60.740 63.158 0.00 0.00 0.00 5.28
3985 4299 2.388232 GCGCCTTACTCCAACACCG 61.388 63.158 0.00 0.00 0.00 4.94
3986 4300 1.302192 TGCGCCTTACTCCAACACC 60.302 57.895 4.18 0.00 0.00 4.16
3987 4301 1.866925 GTGCGCCTTACTCCAACAC 59.133 57.895 4.18 0.00 0.00 3.32
3988 4302 1.666553 CGTGCGCCTTACTCCAACA 60.667 57.895 4.18 0.00 0.00 3.33
3989 4303 2.388232 CCGTGCGCCTTACTCCAAC 61.388 63.158 4.18 0.00 0.00 3.77
3990 4304 2.047655 CCGTGCGCCTTACTCCAA 60.048 61.111 4.18 0.00 0.00 3.53
3991 4305 2.992689 TCCGTGCGCCTTACTCCA 60.993 61.111 4.18 0.00 0.00 3.86
3992 4306 2.202756 CTCCGTGCGCCTTACTCC 60.203 66.667 4.18 0.00 0.00 3.85
3993 4307 1.516603 GACTCCGTGCGCCTTACTC 60.517 63.158 4.18 0.00 0.00 2.59
3994 4308 2.572284 GACTCCGTGCGCCTTACT 59.428 61.111 4.18 0.00 0.00 2.24
3995 4309 2.879462 CGACTCCGTGCGCCTTAC 60.879 66.667 4.18 0.00 0.00 2.34
3996 4310 3.057548 TCGACTCCGTGCGCCTTA 61.058 61.111 4.18 0.00 37.05 2.69
3997 4311 4.719369 GTCGACTCCGTGCGCCTT 62.719 66.667 8.70 0.00 37.05 4.35
4025 4339 3.861263 GATCCGGTTTGCGTCGCC 61.861 66.667 15.88 0.00 0.00 5.54
4026 4340 3.115892 TGATCCGGTTTGCGTCGC 61.116 61.111 11.10 11.10 0.00 5.19
4027 4341 1.358725 ATGTGATCCGGTTTGCGTCG 61.359 55.000 0.00 0.00 0.00 5.12
4028 4342 1.593006 CTATGTGATCCGGTTTGCGTC 59.407 52.381 0.00 0.00 0.00 5.19
4029 4343 1.206132 TCTATGTGATCCGGTTTGCGT 59.794 47.619 0.00 0.00 0.00 5.24
4030 4344 1.593006 GTCTATGTGATCCGGTTTGCG 59.407 52.381 0.00 0.00 0.00 4.85
4031 4345 1.940613 GGTCTATGTGATCCGGTTTGC 59.059 52.381 0.00 0.00 0.00 3.68
4032 4346 2.201732 CGGTCTATGTGATCCGGTTTG 58.798 52.381 0.00 0.00 36.45 2.93
4033 4347 1.138266 CCGGTCTATGTGATCCGGTTT 59.862 52.381 12.52 0.00 45.62 3.27
4034 4348 0.750850 CCGGTCTATGTGATCCGGTT 59.249 55.000 12.52 0.00 45.62 4.44
4035 4349 2.426651 CCGGTCTATGTGATCCGGT 58.573 57.895 12.52 0.00 45.62 5.28
4037 4351 2.864343 GTTTTCCGGTCTATGTGATCCG 59.136 50.000 0.00 0.00 38.31 4.18
4038 4352 3.203716 GGTTTTCCGGTCTATGTGATCC 58.796 50.000 0.00 0.00 0.00 3.36
4039 4353 3.869065 TGGTTTTCCGGTCTATGTGATC 58.131 45.455 0.00 0.00 44.36 2.92
4040 4354 3.992943 TGGTTTTCCGGTCTATGTGAT 57.007 42.857 0.00 0.00 44.36 3.06
4041 4355 3.773418 TTGGTTTTCCGGTCTATGTGA 57.227 42.857 0.00 0.00 44.36 3.58
4042 4356 4.839668 TTTTGGTTTTCCGGTCTATGTG 57.160 40.909 0.00 0.00 44.36 3.21
4043 4357 4.891168 ACTTTTTGGTTTTCCGGTCTATGT 59.109 37.500 0.00 0.00 44.36 2.29
4044 4358 5.447624 ACTTTTTGGTTTTCCGGTCTATG 57.552 39.130 0.00 0.00 44.36 2.23
4045 4359 6.429078 GTCTACTTTTTGGTTTTCCGGTCTAT 59.571 38.462 0.00 0.00 44.36 1.98
4046 4360 5.759763 GTCTACTTTTTGGTTTTCCGGTCTA 59.240 40.000 0.00 0.00 44.36 2.59
4047 4361 4.577693 GTCTACTTTTTGGTTTTCCGGTCT 59.422 41.667 0.00 0.00 44.36 3.85
4048 4362 4.553351 CGTCTACTTTTTGGTTTTCCGGTC 60.553 45.833 0.00 0.00 44.36 4.79
4049 4363 3.313249 CGTCTACTTTTTGGTTTTCCGGT 59.687 43.478 0.00 0.00 44.36 5.28
4050 4364 3.850740 GCGTCTACTTTTTGGTTTTCCGG 60.851 47.826 0.00 0.00 44.36 5.14
4051 4365 3.294102 GCGTCTACTTTTTGGTTTTCCG 58.706 45.455 0.00 0.00 44.36 4.30
4052 4366 3.635331 GGCGTCTACTTTTTGGTTTTCC 58.365 45.455 0.00 0.00 41.14 3.13
4053 4367 3.294102 CGGCGTCTACTTTTTGGTTTTC 58.706 45.455 0.00 0.00 0.00 2.29
4054 4368 2.033675 CCGGCGTCTACTTTTTGGTTTT 59.966 45.455 6.01 0.00 0.00 2.43
4055 4369 1.605232 CCGGCGTCTACTTTTTGGTTT 59.395 47.619 6.01 0.00 0.00 3.27
4056 4370 1.232119 CCGGCGTCTACTTTTTGGTT 58.768 50.000 6.01 0.00 0.00 3.67
4057 4371 0.107268 ACCGGCGTCTACTTTTTGGT 59.893 50.000 6.01 0.00 0.00 3.67
4058 4372 0.794473 GACCGGCGTCTACTTTTTGG 59.206 55.000 6.01 0.00 35.99 3.28
4059 4373 1.504359 TGACCGGCGTCTACTTTTTG 58.496 50.000 6.01 0.00 39.94 2.44
4060 4374 2.243602 TTGACCGGCGTCTACTTTTT 57.756 45.000 6.01 0.00 39.94 1.94
4061 4375 2.140717 CTTTGACCGGCGTCTACTTTT 58.859 47.619 6.01 0.00 39.94 2.27
4062 4376 1.792006 CTTTGACCGGCGTCTACTTT 58.208 50.000 6.01 0.00 39.94 2.66
4063 4377 0.669625 GCTTTGACCGGCGTCTACTT 60.670 55.000 6.01 0.00 39.94 2.24
4064 4378 1.080025 GCTTTGACCGGCGTCTACT 60.080 57.895 6.01 0.00 39.94 2.57
4065 4379 2.442188 CGCTTTGACCGGCGTCTAC 61.442 63.158 6.01 0.00 45.34 2.59
4066 4380 2.126228 CGCTTTGACCGGCGTCTA 60.126 61.111 6.01 0.00 45.34 2.59
4076 4390 3.626680 CTCTCGCCGGTCGCTTTGA 62.627 63.158 12.56 7.72 38.27 2.69
4077 4391 3.181967 CTCTCGCCGGTCGCTTTG 61.182 66.667 12.56 4.45 38.27 2.77
4078 4392 3.343788 CTCTCTCGCCGGTCGCTTT 62.344 63.158 12.56 0.00 38.27 3.51
4079 4393 3.816524 CTCTCTCGCCGGTCGCTT 61.817 66.667 12.56 0.00 38.27 4.68
4080 4394 4.779966 TCTCTCTCGCCGGTCGCT 62.780 66.667 12.56 0.00 38.27 4.93
4081 4395 2.615262 ATTTCTCTCTCGCCGGTCGC 62.615 60.000 12.56 0.00 38.27 5.19
4082 4396 0.592754 GATTTCTCTCTCGCCGGTCG 60.593 60.000 1.90 7.73 40.15 4.79
4083 4397 0.249114 GGATTTCTCTCTCGCCGGTC 60.249 60.000 1.90 0.00 0.00 4.79
4084 4398 1.817209 GGATTTCTCTCTCGCCGGT 59.183 57.895 1.90 0.00 0.00 5.28
4085 4399 1.299468 CGGATTTCTCTCTCGCCGG 60.299 63.158 0.00 0.00 35.42 6.13
4086 4400 1.299468 CCGGATTTCTCTCTCGCCG 60.299 63.158 0.00 0.00 38.54 6.46
4087 4401 0.676736 ATCCGGATTTCTCTCTCGCC 59.323 55.000 12.38 0.00 0.00 5.54
4088 4402 1.338337 TGATCCGGATTTCTCTCTCGC 59.662 52.381 20.22 1.68 0.00 5.03
4089 4403 3.717400 TTGATCCGGATTTCTCTCTCG 57.283 47.619 20.22 0.00 0.00 4.04
4090 4404 4.100189 TCCTTTGATCCGGATTTCTCTCTC 59.900 45.833 20.22 4.25 0.00 3.20
4091 4405 4.033709 TCCTTTGATCCGGATTTCTCTCT 58.966 43.478 20.22 0.00 0.00 3.10
4092 4406 4.408182 TCCTTTGATCCGGATTTCTCTC 57.592 45.455 20.22 5.91 0.00 3.20
4093 4407 4.502259 CGATCCTTTGATCCGGATTTCTCT 60.502 45.833 20.22 0.00 43.82 3.10
4094 4408 3.743396 CGATCCTTTGATCCGGATTTCTC 59.257 47.826 20.22 7.17 43.82 2.87
4095 4409 3.495100 CCGATCCTTTGATCCGGATTTCT 60.495 47.826 20.22 0.00 43.82 2.52
4096 4410 2.808543 CCGATCCTTTGATCCGGATTTC 59.191 50.000 20.22 8.43 43.82 2.17
4097 4411 2.487265 CCCGATCCTTTGATCCGGATTT 60.487 50.000 20.22 0.00 44.50 2.17
4098 4412 1.072331 CCCGATCCTTTGATCCGGATT 59.928 52.381 20.22 0.00 44.50 3.01
4099 4413 0.687354 CCCGATCCTTTGATCCGGAT 59.313 55.000 19.21 19.21 44.50 4.18
4100 4414 0.397957 TCCCGATCCTTTGATCCGGA 60.398 55.000 6.61 6.61 46.54 5.14
4101 4415 0.468226 TTCCCGATCCTTTGATCCGG 59.532 55.000 0.00 0.00 43.82 5.14
4102 4416 2.325583 TTTCCCGATCCTTTGATCCG 57.674 50.000 0.00 0.00 43.82 4.18
4120 4434 2.026729 GGCTGCCCTAGAGAGTCTTTTT 60.027 50.000 7.66 0.00 0.00 1.94
4121 4435 1.557371 GGCTGCCCTAGAGAGTCTTTT 59.443 52.381 7.66 0.00 0.00 2.27
4122 4436 1.199615 GGCTGCCCTAGAGAGTCTTT 58.800 55.000 7.66 0.00 0.00 2.52
4123 4437 1.040339 CGGCTGCCCTAGAGAGTCTT 61.040 60.000 14.12 0.00 0.00 3.01
4124 4438 1.454847 CGGCTGCCCTAGAGAGTCT 60.455 63.158 14.12 0.00 0.00 3.24
4125 4439 2.494530 CCGGCTGCCCTAGAGAGTC 61.495 68.421 14.12 0.00 0.00 3.36
4126 4440 2.443016 CCGGCTGCCCTAGAGAGT 60.443 66.667 14.12 0.00 0.00 3.24
4127 4441 3.922640 GCCGGCTGCCCTAGAGAG 61.923 72.222 22.15 0.00 0.00 3.20
4153 4467 4.203076 CTAGGGTTCGTCCGCCGG 62.203 72.222 0.00 0.00 37.11 6.13
4154 4468 4.203076 CCTAGGGTTCGTCCGCCG 62.203 72.222 0.00 0.00 37.00 6.46
4155 4469 1.754234 TACCTAGGGTTCGTCCGCC 60.754 63.158 14.81 0.00 37.09 6.13
4156 4470 1.435105 GTACCTAGGGTTCGTCCGC 59.565 63.158 14.81 0.00 37.09 5.54
4157 4471 1.718757 CCGTACCTAGGGTTCGTCCG 61.719 65.000 14.81 4.08 43.23 4.79
4158 4472 1.387295 CCCGTACCTAGGGTTCGTCC 61.387 65.000 14.81 0.00 43.23 4.79
4159 4473 2.110296 CCCGTACCTAGGGTTCGTC 58.890 63.158 14.81 0.00 43.23 4.20
4160 4474 4.344237 CCCGTACCTAGGGTTCGT 57.656 61.111 14.81 0.00 43.23 3.85
4193 4507 4.873129 CGACCTCCATGACCGCCG 62.873 72.222 0.00 0.00 0.00 6.46
4194 4508 3.458163 TCGACCTCCATGACCGCC 61.458 66.667 0.00 0.00 0.00 6.13
4195 4509 2.202756 GTCGACCTCCATGACCGC 60.203 66.667 3.51 0.00 0.00 5.68
4196 4510 2.494918 GGTCGACCTCCATGACCG 59.505 66.667 27.64 0.00 42.42 4.79
4197 4511 2.494918 CGGTCGACCTCCATGACC 59.505 66.667 30.92 3.41 46.91 4.02
4198 4512 2.202756 GCGGTCGACCTCCATGAC 60.203 66.667 30.92 8.73 0.00 3.06
4199 4513 3.458163 GGCGGTCGACCTCCATGA 61.458 66.667 33.73 0.00 40.59 3.07
4200 4514 4.530857 GGGCGGTCGACCTCCATG 62.531 72.222 37.42 21.41 42.66 3.66
4244 4558 4.165486 TTAACCCTAGCCGCCGCC 62.165 66.667 0.00 0.00 34.57 6.13
4245 4559 2.588034 CTTAACCCTAGCCGCCGC 60.588 66.667 0.00 0.00 0.00 6.53
4246 4560 1.755393 ATCCTTAACCCTAGCCGCCG 61.755 60.000 0.00 0.00 0.00 6.46
4247 4561 0.035036 GATCCTTAACCCTAGCCGCC 59.965 60.000 0.00 0.00 0.00 6.13
4248 4562 0.319641 CGATCCTTAACCCTAGCCGC 60.320 60.000 0.00 0.00 0.00 6.53
4249 4563 1.000496 GTCGATCCTTAACCCTAGCCG 60.000 57.143 0.00 0.00 0.00 5.52
4250 4564 2.317973 AGTCGATCCTTAACCCTAGCC 58.682 52.381 0.00 0.00 0.00 3.93
4251 4565 3.718815 CAAGTCGATCCTTAACCCTAGC 58.281 50.000 0.00 0.00 0.00 3.42
4252 4566 3.718815 GCAAGTCGATCCTTAACCCTAG 58.281 50.000 0.00 0.00 0.00 3.02
4253 4567 2.100252 CGCAAGTCGATCCTTAACCCTA 59.900 50.000 0.00 0.00 41.67 3.53
4254 4568 1.134788 CGCAAGTCGATCCTTAACCCT 60.135 52.381 0.00 0.00 41.67 4.34
4255 4569 1.134907 TCGCAAGTCGATCCTTAACCC 60.135 52.381 0.00 0.00 43.16 4.11
4256 4570 2.288961 TCGCAAGTCGATCCTTAACC 57.711 50.000 0.00 0.00 43.16 2.85
4266 4580 3.966154 ACTTGGTATCTATCGCAAGTCG 58.034 45.455 0.00 0.00 40.15 4.18
4267 4581 5.810587 TGAAACTTGGTATCTATCGCAAGTC 59.189 40.000 0.00 0.00 39.48 3.01
4268 4582 5.581085 GTGAAACTTGGTATCTATCGCAAGT 59.419 40.000 0.00 0.00 39.48 3.16
4269 4583 5.006746 GGTGAAACTTGGTATCTATCGCAAG 59.993 44.000 0.00 0.00 36.74 4.01
4270 4584 4.873827 GGTGAAACTTGGTATCTATCGCAA 59.126 41.667 0.00 0.00 36.74 4.85
4271 4585 4.439057 GGTGAAACTTGGTATCTATCGCA 58.561 43.478 0.00 0.00 36.74 5.10
4272 4586 3.489785 CGGTGAAACTTGGTATCTATCGC 59.510 47.826 0.00 0.00 36.74 4.58
4273 4587 4.928601 TCGGTGAAACTTGGTATCTATCG 58.071 43.478 0.00 0.00 36.74 2.92
4274 4588 6.984474 TGATTCGGTGAAACTTGGTATCTATC 59.016 38.462 0.00 0.00 36.74 2.08
4275 4589 6.884832 TGATTCGGTGAAACTTGGTATCTAT 58.115 36.000 0.00 0.00 36.74 1.98
4276 4590 6.153851 TCTGATTCGGTGAAACTTGGTATCTA 59.846 38.462 0.00 0.00 36.74 1.98
4277 4591 5.046591 TCTGATTCGGTGAAACTTGGTATCT 60.047 40.000 0.00 0.00 36.74 1.98
4278 4592 5.175859 TCTGATTCGGTGAAACTTGGTATC 58.824 41.667 0.00 0.00 36.74 2.24
4279 4593 5.160607 TCTGATTCGGTGAAACTTGGTAT 57.839 39.130 0.00 0.00 36.74 2.73
4280 4594 4.562757 CCTCTGATTCGGTGAAACTTGGTA 60.563 45.833 0.00 0.00 36.74 3.25
4281 4595 3.403038 CTCTGATTCGGTGAAACTTGGT 58.597 45.455 0.00 0.00 36.74 3.67
4282 4596 2.744202 CCTCTGATTCGGTGAAACTTGG 59.256 50.000 0.00 0.00 36.74 3.61
4283 4597 3.403038 ACCTCTGATTCGGTGAAACTTG 58.597 45.455 0.00 0.00 36.74 3.16
4284 4598 3.557264 GGACCTCTGATTCGGTGAAACTT 60.557 47.826 0.00 0.00 36.74 2.66
4285 4599 2.028020 GGACCTCTGATTCGGTGAAACT 60.028 50.000 0.00 0.00 36.74 2.66
4286 4600 2.028020 AGGACCTCTGATTCGGTGAAAC 60.028 50.000 0.00 0.00 32.62 2.78
4394 4708 4.312443 CAGACGGTACAAATAAGTGGTGT 58.688 43.478 0.00 0.00 0.00 4.16
4412 4726 2.027192 TCTTGGGCACATTCTACCAGAC 60.027 50.000 0.00 0.00 33.96 3.51
4425 4739 0.329261 CCACCAGAATCTCTTGGGCA 59.671 55.000 0.00 0.00 0.00 5.36
4427 4741 1.630369 TGACCACCAGAATCTCTTGGG 59.370 52.381 10.51 0.00 30.46 4.12
4433 4747 4.101741 GCCTTATACTGACCACCAGAATCT 59.898 45.833 0.00 0.00 45.78 2.40
4536 5965 1.373570 CTTCCATGAAGAGGGCGTTC 58.626 55.000 0.00 0.00 41.71 3.95
4669 6098 7.596621 CGATATATCTATTGCTGGCGACAATAT 59.403 37.037 10.93 0.00 42.06 1.28
4670 6099 6.918022 CGATATATCTATTGCTGGCGACAATA 59.082 38.462 10.93 10.45 42.06 1.90
4671 6100 5.750547 CGATATATCTATTGCTGGCGACAAT 59.249 40.000 10.93 9.38 42.06 2.71
4695 6124 5.882557 ACAAGGACCTGACATTTCATACATC 59.117 40.000 0.00 0.00 0.00 3.06
4704 6133 3.264193 TGATGCTACAAGGACCTGACATT 59.736 43.478 0.00 0.00 0.00 2.71
4728 6157 8.334632 CGAAAGCAACATGTGTATATATGACAA 58.665 33.333 0.00 0.00 0.00 3.18
4740 6169 5.343058 CCATCTTTTACGAAAGCAACATGTG 59.657 40.000 0.00 0.00 41.63 3.21
4741 6170 5.009610 ACCATCTTTTACGAAAGCAACATGT 59.990 36.000 0.00 0.00 41.63 3.21
4743 6172 5.240623 TCACCATCTTTTACGAAAGCAACAT 59.759 36.000 0.00 0.00 41.63 2.71
4751 6744 4.312443 GGTCACTCACCATCTTTTACGAA 58.688 43.478 0.00 0.00 45.98 3.85
4765 6758 6.071108 TGGAATGAAAAACAAAAGGTCACTCA 60.071 34.615 0.00 0.00 0.00 3.41
4766 6759 6.255670 GTGGAATGAAAAACAAAAGGTCACTC 59.744 38.462 0.00 0.00 0.00 3.51
4767 6760 6.106003 GTGGAATGAAAAACAAAAGGTCACT 58.894 36.000 0.00 0.00 0.00 3.41
4768 6761 5.293324 GGTGGAATGAAAAACAAAAGGTCAC 59.707 40.000 0.00 0.00 0.00 3.67
4769 6762 5.046304 TGGTGGAATGAAAAACAAAAGGTCA 60.046 36.000 0.00 0.00 0.00 4.02
4771 6764 5.428184 TGGTGGAATGAAAAACAAAAGGT 57.572 34.783 0.00 0.00 0.00 3.50
4775 6768 9.050601 GTGAATAATGGTGGAATGAAAAACAAA 57.949 29.630 0.00 0.00 0.00 2.83
4780 6773 6.022315 AGGGTGAATAATGGTGGAATGAAAA 58.978 36.000 0.00 0.00 0.00 2.29
4781 6774 5.421693 CAGGGTGAATAATGGTGGAATGAAA 59.578 40.000 0.00 0.00 0.00 2.69
4783 6776 4.229353 TCAGGGTGAATAATGGTGGAATGA 59.771 41.667 0.00 0.00 0.00 2.57
4812 6805 7.614494 CAAACTATTGTGGGGAAAAGAATGAT 58.386 34.615 0.00 0.00 0.00 2.45
4813 6806 6.991938 CAAACTATTGTGGGGAAAAGAATGA 58.008 36.000 0.00 0.00 0.00 2.57
4833 7051 3.630312 TGAGTTTACCTGGAAGCACAAAC 59.370 43.478 0.00 1.31 31.58 2.93
4901 7119 2.936032 ACTTGTCCTCCTGCCCCC 60.936 66.667 0.00 0.00 0.00 5.40
5191 7742 2.029623 TCAGAATGAGCGGTACCTACC 58.970 52.381 10.90 0.00 42.56 3.18
5209 7760 1.974265 TTTGATTCGCACAACCCTCA 58.026 45.000 0.00 0.00 0.00 3.86
5290 7841 6.693761 CACATGTGTCATGTGGTAATTTTG 57.306 37.500 25.74 6.08 44.04 2.44
5510 8066 3.381590 GCTAAAGGTATGCTTTTCCCCAG 59.618 47.826 0.00 0.00 0.00 4.45
5529 8086 1.448893 GCGTTTGATCCACCGGCTA 60.449 57.895 0.00 0.00 0.00 3.93
5613 8170 2.855660 TGCAGCACACATGATATTGC 57.144 45.000 0.00 1.98 35.08 3.56
5617 8174 4.787260 ACATTTTGCAGCACACATGATA 57.213 36.364 12.66 0.00 0.00 2.15
5635 8192 1.202475 GGGTGTTGTTGCGGAAAACAT 60.202 47.619 15.94 0.00 39.68 2.71
5773 8369 6.515272 AAGCCTTTTACAACATAGGTGATG 57.485 37.500 0.00 0.00 41.79 3.07
5774 8370 7.378181 CAAAAGCCTTTTACAACATAGGTGAT 58.622 34.615 1.38 0.00 0.00 3.06
5806 8402 4.984161 GCAGAATTCTTTGCAACAAAGCTA 59.016 37.500 4.86 6.27 40.02 3.32
5833 8429 3.489355 TCATCATTGCAACAAGGAGTGT 58.511 40.909 0.00 0.00 44.64 3.55
5836 8432 3.128242 GTCCTCATCATTGCAACAAGGAG 59.872 47.826 14.45 14.45 32.35 3.69
5868 8464 4.021807 TCCTTACGCAAGAACACTCATGTA 60.022 41.667 0.00 0.00 38.65 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.