Multiple sequence alignment - TraesCS2D01G509800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G509800 chr2D 100.000 3860 0 0 1 3860 602006089 602009948 0.000000e+00 7129.0
1 TraesCS2D01G509800 chr2D 100.000 558 0 0 4189 4746 602010277 602010834 0.000000e+00 1031.0
2 TraesCS2D01G509800 chr2D 96.104 616 20 3 45 660 102660637 102661248 0.000000e+00 1002.0
3 TraesCS2D01G509800 chr2D 95.372 605 24 4 45 649 117188931 117188331 0.000000e+00 959.0
4 TraesCS2D01G509800 chr2D 87.826 345 32 4 4373 4708 287696310 287695967 3.440000e-106 396.0
5 TraesCS2D01G509800 chr2D 100.000 30 0 0 4717 4746 172925948 172925919 6.630000e-04 56.5
6 TraesCS2D01G509800 chr2D 100.000 28 0 0 3826 3853 613817385 613817412 9.000000e-03 52.8
7 TraesCS2D01G509800 chr2B 95.188 3055 100 13 771 3822 732221907 732224917 0.000000e+00 4783.0
8 TraesCS2D01G509800 chr2B 89.940 497 38 4 4228 4713 732226914 732227409 8.670000e-177 630.0
9 TraesCS2D01G509800 chr2B 93.365 211 11 2 3650 3860 732025815 732026022 4.610000e-80 309.0
10 TraesCS2D01G509800 chr2B 93.365 211 11 2 3650 3860 732226336 732226543 4.610000e-80 309.0
11 TraesCS2D01G509800 chr4B 87.304 2489 234 44 1008 3455 654123888 654126335 0.000000e+00 2771.0
12 TraesCS2D01G509800 chr4B 87.784 1498 136 24 2180 3633 654130311 654131805 0.000000e+00 1709.0
13 TraesCS2D01G509800 chr4B 87.295 1039 117 7 2438 3465 638987409 638988443 0.000000e+00 1173.0
14 TraesCS2D01G509800 chr4B 80.778 1363 210 37 1082 2418 638985978 638987314 0.000000e+00 1018.0
15 TraesCS2D01G509800 chr4B 81.084 941 121 33 1056 1955 654128644 654129568 0.000000e+00 699.0
16 TraesCS2D01G509800 chr4B 77.739 849 147 27 2575 3411 431796099 431795281 2.570000e-132 483.0
17 TraesCS2D01G509800 chr5A 86.871 2483 252 41 1014 3465 691811693 691814132 0.000000e+00 2712.0
18 TraesCS2D01G509800 chr5A 86.220 1045 123 9 2438 3465 678083345 678082305 0.000000e+00 1112.0
19 TraesCS2D01G509800 chr5A 82.207 1332 200 28 1104 2418 678084751 678083440 0.000000e+00 1112.0
20 TraesCS2D01G509800 chr5A 93.280 625 35 5 27 649 691991204 691990585 0.000000e+00 915.0
21 TraesCS2D01G509800 chr5A 88.630 343 29 4 4374 4707 122987348 122987689 4.420000e-110 409.0
22 TraesCS2D01G509800 chr5A 86.667 165 18 1 3473 3633 691814184 691814348 3.770000e-41 180.0
23 TraesCS2D01G509800 chr4D 86.794 1045 117 11 2438 3465 497666546 497667586 0.000000e+00 1146.0
24 TraesCS2D01G509800 chr4D 81.367 1331 213 26 1104 2418 497665140 497666451 0.000000e+00 1051.0
25 TraesCS2D01G509800 chr4D 94.711 605 28 3 45 649 95519009 95519609 0.000000e+00 937.0
26 TraesCS2D01G509800 chr4D 76.152 868 136 56 2577 3416 630180 631004 1.600000e-104 390.0
27 TraesCS2D01G509800 chr4D 97.059 34 1 0 18 51 65382119 65382086 1.840000e-04 58.4
28 TraesCS2D01G509800 chr4A 83.130 1150 158 26 2498 3633 731003746 731002619 0.000000e+00 1016.0
29 TraesCS2D01G509800 chr4A 87.931 348 30 5 4370 4708 69275709 69275365 2.660000e-107 399.0
30 TraesCS2D01G509800 chr6D 94.400 625 30 3 27 649 423465131 423465752 0.000000e+00 955.0
31 TraesCS2D01G509800 chr6D 91.096 292 25 1 4417 4708 407467403 407467113 1.240000e-105 394.0
32 TraesCS2D01G509800 chr7A 94.545 605 29 3 45 649 288230096 288229496 0.000000e+00 931.0
33 TraesCS2D01G509800 chr7A 93.974 614 31 4 45 658 220552945 220552338 0.000000e+00 924.0
34 TraesCS2D01G509800 chr7A 86.761 355 36 5 4368 4713 10977254 10976902 7.450000e-103 385.0
35 TraesCS2D01G509800 chr7A 100.000 30 0 0 4717 4746 199151037 199151008 6.630000e-04 56.5
36 TraesCS2D01G509800 chr3D 94.146 615 31 4 45 658 568485406 568484796 0.000000e+00 931.0
37 TraesCS2D01G509800 chr3D 89.773 352 26 4 4370 4713 346955430 346955779 4.360000e-120 442.0
38 TraesCS2D01G509800 chr3D 90.643 171 16 0 3658 3828 381169760 381169930 1.330000e-55 228.0
39 TraesCS2D01G509800 chr3D 97.059 34 1 0 4713 4746 312081343 312081376 1.840000e-04 58.4
40 TraesCS2D01G509800 chr5D 94.380 605 33 1 45 649 423357826 423357223 0.000000e+00 928.0
41 TraesCS2D01G509800 chr5D 90.058 171 17 0 3658 3828 565740484 565740654 6.180000e-54 222.0
42 TraesCS2D01G509800 chr5B 82.162 925 135 21 2507 3416 6919152 6918243 0.000000e+00 767.0
43 TraesCS2D01G509800 chr5B 87.143 350 34 5 4373 4713 262053512 262053859 2.070000e-103 387.0
44 TraesCS2D01G509800 chr5B 94.595 37 2 0 4710 4746 470406517 470406553 1.840000e-04 58.4
45 TraesCS2D01G509800 chr5B 100.000 30 0 0 4717 4746 353728013 353728042 6.630000e-04 56.5
46 TraesCS2D01G509800 chr1D 86.313 358 38 5 4365 4713 51992529 51992884 3.470000e-101 379.0
47 TraesCS2D01G509800 chr7B 86.628 344 35 4 4374 4708 126029768 126029427 2.090000e-98 370.0
48 TraesCS2D01G509800 chrUn 93.365 211 11 2 3650 3860 389290224 389290431 4.610000e-80 309.0
49 TraesCS2D01G509800 chr3A 89.474 171 16 1 3658 3828 648496477 648496309 1.030000e-51 215.0
50 TraesCS2D01G509800 chr3A 96.875 32 1 0 3822 3853 671731497 671731466 2.000000e-03 54.7
51 TraesCS2D01G509800 chr1A 88.889 171 19 0 3658 3828 578939272 578939102 1.340000e-50 211.0
52 TraesCS2D01G509800 chr7D 89.634 164 17 0 3658 3821 31116201 31116364 4.810000e-50 209.0
53 TraesCS2D01G509800 chr7D 97.368 38 1 0 3823 3860 573400204 573400167 1.100000e-06 65.8
54 TraesCS2D01G509800 chr7D 97.059 34 1 0 18 51 215265872 215265839 1.840000e-04 58.4
55 TraesCS2D01G509800 chr6B 97.059 34 1 0 4713 4746 309202611 309202578 1.840000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G509800 chr2D 602006089 602010834 4745 False 4080.000000 7129 100.000000 1 4746 2 chr2D.!!$F3 4745
1 TraesCS2D01G509800 chr2D 102660637 102661248 611 False 1002.000000 1002 96.104000 45 660 1 chr2D.!!$F1 615
2 TraesCS2D01G509800 chr2D 117188331 117188931 600 True 959.000000 959 95.372000 45 649 1 chr2D.!!$R1 604
3 TraesCS2D01G509800 chr2B 732221907 732227409 5502 False 1907.333333 4783 92.831000 771 4713 3 chr2B.!!$F2 3942
4 TraesCS2D01G509800 chr4B 654123888 654131805 7917 False 1726.333333 2771 85.390667 1008 3633 3 chr4B.!!$F2 2625
5 TraesCS2D01G509800 chr4B 638985978 638988443 2465 False 1095.500000 1173 84.036500 1082 3465 2 chr4B.!!$F1 2383
6 TraesCS2D01G509800 chr4B 431795281 431796099 818 True 483.000000 483 77.739000 2575 3411 1 chr4B.!!$R1 836
7 TraesCS2D01G509800 chr5A 691811693 691814348 2655 False 1446.000000 2712 86.769000 1014 3633 2 chr5A.!!$F2 2619
8 TraesCS2D01G509800 chr5A 678082305 678084751 2446 True 1112.000000 1112 84.213500 1104 3465 2 chr5A.!!$R2 2361
9 TraesCS2D01G509800 chr5A 691990585 691991204 619 True 915.000000 915 93.280000 27 649 1 chr5A.!!$R1 622
10 TraesCS2D01G509800 chr4D 497665140 497667586 2446 False 1098.500000 1146 84.080500 1104 3465 2 chr4D.!!$F3 2361
11 TraesCS2D01G509800 chr4D 95519009 95519609 600 False 937.000000 937 94.711000 45 649 1 chr4D.!!$F2 604
12 TraesCS2D01G509800 chr4D 630180 631004 824 False 390.000000 390 76.152000 2577 3416 1 chr4D.!!$F1 839
13 TraesCS2D01G509800 chr4A 731002619 731003746 1127 True 1016.000000 1016 83.130000 2498 3633 1 chr4A.!!$R2 1135
14 TraesCS2D01G509800 chr6D 423465131 423465752 621 False 955.000000 955 94.400000 27 649 1 chr6D.!!$F1 622
15 TraesCS2D01G509800 chr7A 288229496 288230096 600 True 931.000000 931 94.545000 45 649 1 chr7A.!!$R4 604
16 TraesCS2D01G509800 chr7A 220552338 220552945 607 True 924.000000 924 93.974000 45 658 1 chr7A.!!$R3 613
17 TraesCS2D01G509800 chr3D 568484796 568485406 610 True 931.000000 931 94.146000 45 658 1 chr3D.!!$R1 613
18 TraesCS2D01G509800 chr5D 423357223 423357826 603 True 928.000000 928 94.380000 45 649 1 chr5D.!!$R1 604
19 TraesCS2D01G509800 chr5B 6918243 6919152 909 True 767.000000 767 82.162000 2507 3416 1 chr5B.!!$R1 909

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
919 926 0.112606 ACTGGAACTGGTCTCGGAGA 59.887 55.0 2.97 2.97 0.0 3.71 F
1999 2094 0.040204 CCCCAGGCCTGAACTTCAAT 59.960 55.0 34.91 0.00 0.0 2.57 F
2511 2693 0.177604 GGGATGGAGAGTGTGAGCAG 59.822 60.0 0.00 0.00 0.0 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2460 2642 1.186200 CTCTCTGGACCATCGGTTCA 58.814 55.0 0.0 0.0 39.18 3.18 R
3741 10825 0.179015 TGAACGCCCAAGCCAAGTTA 60.179 50.0 0.0 0.0 34.57 2.24 R
4406 11534 1.094073 GCATGCGAGATCAGCCACTT 61.094 55.0 0.0 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 121 9.104965 TGTAGATAGCATGTATGGTTTTTACAC 57.895 33.333 11.13 2.36 39.52 2.90
195 199 9.713713 GAGTATTACAGAGTCCTTTCTTTTTCT 57.286 33.333 0.00 0.00 0.00 2.52
230 234 3.322828 AGCTGTGCCATTTGATTTGAAGT 59.677 39.130 0.00 0.00 0.00 3.01
271 277 7.461043 ACAAAGGGGTAGCATTCAGGATATATA 59.539 37.037 0.00 0.00 0.00 0.86
272 278 8.497745 CAAAGGGGTAGCATTCAGGATATATAT 58.502 37.037 0.00 0.00 0.00 0.86
276 282 8.934697 GGGGTAGCATTCAGGATATATATACAA 58.065 37.037 7.71 0.00 0.00 2.41
555 561 9.676861 GGGTATAAGTTCTTACCAAATGTACTT 57.323 33.333 13.95 0.00 39.75 2.24
649 656 1.002366 GCGCAACTGGTCATCTAGTG 58.998 55.000 0.30 0.00 35.60 2.74
660 667 6.931840 ACTGGTCATCTAGTGAGAAGAAAAAC 59.068 38.462 0.00 0.00 37.56 2.43
661 668 7.067496 TGGTCATCTAGTGAGAAGAAAAACT 57.933 36.000 0.00 0.00 37.56 2.66
662 669 8.190326 TGGTCATCTAGTGAGAAGAAAAACTA 57.810 34.615 0.00 0.00 37.56 2.24
663 670 8.307483 TGGTCATCTAGTGAGAAGAAAAACTAG 58.693 37.037 2.92 2.92 42.21 2.57
664 671 7.762159 GGTCATCTAGTGAGAAGAAAAACTAGG 59.238 40.741 8.41 0.00 41.52 3.02
665 672 8.524487 GTCATCTAGTGAGAAGAAAAACTAGGA 58.476 37.037 8.41 0.00 41.52 2.94
666 673 8.744652 TCATCTAGTGAGAAGAAAAACTAGGAG 58.255 37.037 8.41 3.16 41.52 3.69
667 674 8.744652 CATCTAGTGAGAAGAAAAACTAGGAGA 58.255 37.037 8.41 0.00 41.52 3.71
668 675 8.343168 TCTAGTGAGAAGAAAAACTAGGAGAG 57.657 38.462 8.41 0.00 41.52 3.20
669 676 6.353404 AGTGAGAAGAAAAACTAGGAGAGG 57.647 41.667 0.00 0.00 0.00 3.69
670 677 4.932799 GTGAGAAGAAAAACTAGGAGAGGC 59.067 45.833 0.00 0.00 0.00 4.70
671 678 4.020128 TGAGAAGAAAAACTAGGAGAGGCC 60.020 45.833 0.00 0.00 0.00 5.19
672 679 3.910627 AGAAGAAAAACTAGGAGAGGCCA 59.089 43.478 5.01 0.00 40.02 5.36
673 680 3.704800 AGAAAAACTAGGAGAGGCCAC 57.295 47.619 5.01 0.00 40.02 5.01
674 681 3.252351 AGAAAAACTAGGAGAGGCCACT 58.748 45.455 5.01 2.83 40.02 4.00
675 682 3.653352 AGAAAAACTAGGAGAGGCCACTT 59.347 43.478 5.01 0.00 40.02 3.16
676 683 4.104897 AGAAAAACTAGGAGAGGCCACTTT 59.895 41.667 5.01 0.00 40.02 2.66
677 684 4.455070 AAAACTAGGAGAGGCCACTTTT 57.545 40.909 5.01 0.00 40.02 2.27
678 685 4.455070 AAACTAGGAGAGGCCACTTTTT 57.545 40.909 5.01 0.00 40.02 1.94
701 708 2.040278 AGGGTCCCTCAGGCTCAG 59.960 66.667 3.85 0.00 0.00 3.35
702 709 2.284995 GGGTCCCTCAGGCTCAGT 60.285 66.667 0.00 0.00 0.00 3.41
703 710 1.920835 GGGTCCCTCAGGCTCAGTT 60.921 63.158 0.00 0.00 0.00 3.16
704 711 1.599576 GGTCCCTCAGGCTCAGTTC 59.400 63.158 0.00 0.00 0.00 3.01
705 712 1.599576 GTCCCTCAGGCTCAGTTCC 59.400 63.158 0.00 0.00 0.00 3.62
706 713 1.158466 TCCCTCAGGCTCAGTTCCA 59.842 57.895 0.00 0.00 0.00 3.53
707 714 1.194781 TCCCTCAGGCTCAGTTCCAC 61.195 60.000 0.00 0.00 0.00 4.02
708 715 1.197430 CCCTCAGGCTCAGTTCCACT 61.197 60.000 0.00 0.00 0.00 4.00
709 716 0.248843 CCTCAGGCTCAGTTCCACTC 59.751 60.000 0.00 0.00 0.00 3.51
710 717 1.265236 CTCAGGCTCAGTTCCACTCT 58.735 55.000 0.00 0.00 0.00 3.24
711 718 1.622811 CTCAGGCTCAGTTCCACTCTT 59.377 52.381 0.00 0.00 0.00 2.85
712 719 1.345741 TCAGGCTCAGTTCCACTCTTG 59.654 52.381 0.00 0.00 0.00 3.02
713 720 0.689623 AGGCTCAGTTCCACTCTTGG 59.310 55.000 0.00 0.00 45.56 3.61
729 736 6.856895 CACTCTTGGAAAACTTTTTCTCACT 58.143 36.000 12.90 0.00 44.49 3.41
730 737 6.969473 CACTCTTGGAAAACTTTTTCTCACTC 59.031 38.462 12.90 0.00 44.49 3.51
731 738 6.887002 ACTCTTGGAAAACTTTTTCTCACTCT 59.113 34.615 12.90 0.00 44.49 3.24
732 739 7.088589 TCTTGGAAAACTTTTTCTCACTCTG 57.911 36.000 12.90 3.17 44.49 3.35
733 740 5.835113 TGGAAAACTTTTTCTCACTCTGG 57.165 39.130 12.90 0.00 44.49 3.86
734 741 4.644685 TGGAAAACTTTTTCTCACTCTGGG 59.355 41.667 12.90 0.00 44.49 4.45
735 742 4.645136 GGAAAACTTTTTCTCACTCTGGGT 59.355 41.667 12.90 0.00 44.49 4.51
736 743 5.221067 GGAAAACTTTTTCTCACTCTGGGTC 60.221 44.000 12.90 0.00 44.49 4.46
737 744 3.113260 ACTTTTTCTCACTCTGGGTCG 57.887 47.619 0.00 0.00 0.00 4.79
738 745 2.698797 ACTTTTTCTCACTCTGGGTCGA 59.301 45.455 0.00 0.00 0.00 4.20
739 746 3.243907 ACTTTTTCTCACTCTGGGTCGAG 60.244 47.826 0.00 2.03 37.07 4.04
740 747 2.287977 TTTCTCACTCTGGGTCGAGA 57.712 50.000 5.94 5.94 35.06 4.04
741 748 2.516227 TTCTCACTCTGGGTCGAGAT 57.484 50.000 9.56 0.00 34.58 2.75
742 749 2.516227 TCTCACTCTGGGTCGAGATT 57.484 50.000 5.94 0.00 35.06 2.40
743 750 2.370349 TCTCACTCTGGGTCGAGATTC 58.630 52.381 5.94 0.00 35.06 2.52
744 751 2.025793 TCTCACTCTGGGTCGAGATTCT 60.026 50.000 5.94 0.00 35.06 2.40
745 752 2.757868 CTCACTCTGGGTCGAGATTCTT 59.242 50.000 0.00 0.00 35.06 2.52
746 753 3.165875 TCACTCTGGGTCGAGATTCTTT 58.834 45.455 0.00 0.00 35.06 2.52
747 754 3.578716 TCACTCTGGGTCGAGATTCTTTT 59.421 43.478 0.00 0.00 35.06 2.27
748 755 4.770531 TCACTCTGGGTCGAGATTCTTTTA 59.229 41.667 0.00 0.00 35.06 1.52
749 756 4.865365 CACTCTGGGTCGAGATTCTTTTAC 59.135 45.833 0.00 0.00 35.06 2.01
750 757 4.773149 ACTCTGGGTCGAGATTCTTTTACT 59.227 41.667 0.00 0.00 35.06 2.24
751 758 5.073311 TCTGGGTCGAGATTCTTTTACTG 57.927 43.478 0.00 0.00 0.00 2.74
752 759 4.527038 TCTGGGTCGAGATTCTTTTACTGT 59.473 41.667 0.00 0.00 0.00 3.55
753 760 4.566004 TGGGTCGAGATTCTTTTACTGTG 58.434 43.478 0.00 0.00 0.00 3.66
754 761 4.039973 TGGGTCGAGATTCTTTTACTGTGT 59.960 41.667 0.00 0.00 0.00 3.72
755 762 5.244402 TGGGTCGAGATTCTTTTACTGTGTA 59.756 40.000 0.00 0.00 0.00 2.90
756 763 5.575995 GGGTCGAGATTCTTTTACTGTGTAC 59.424 44.000 0.00 0.00 0.00 2.90
757 764 6.388278 GGTCGAGATTCTTTTACTGTGTACT 58.612 40.000 0.00 0.00 0.00 2.73
758 765 7.362401 GGGTCGAGATTCTTTTACTGTGTACTA 60.362 40.741 0.00 0.00 0.00 1.82
759 766 7.697291 GGTCGAGATTCTTTTACTGTGTACTAG 59.303 40.741 0.00 0.00 0.00 2.57
760 767 8.235905 GTCGAGATTCTTTTACTGTGTACTAGT 58.764 37.037 0.00 0.00 0.00 2.57
761 768 9.440773 TCGAGATTCTTTTACTGTGTACTAGTA 57.559 33.333 0.00 0.00 0.00 1.82
795 802 4.706962 TGATATATGAGGTCGGATCCACAG 59.293 45.833 13.41 0.00 32.24 3.66
817 824 3.637065 AGGGACTGTACCATCCTCC 57.363 57.895 12.53 0.00 37.18 4.30
831 838 3.628513 CCATCCTCCAGACTCTAGTCCAA 60.629 52.174 6.50 0.00 45.85 3.53
851 858 1.338973 ACATGCTCTGCCAAACAACAG 59.661 47.619 0.00 0.00 35.15 3.16
858 865 0.457851 TGCCAAACAACAGAAACGGG 59.542 50.000 0.00 0.00 0.00 5.28
862 869 2.482839 CCAAACAACAGAAACGGGCAAT 60.483 45.455 0.00 0.00 0.00 3.56
863 870 2.793278 AACAACAGAAACGGGCAATC 57.207 45.000 0.00 0.00 0.00 2.67
864 871 0.958822 ACAACAGAAACGGGCAATCC 59.041 50.000 0.00 0.00 0.00 3.01
865 872 1.247567 CAACAGAAACGGGCAATCCT 58.752 50.000 0.00 0.00 0.00 3.24
906 913 1.142870 CAAGTCCACCTTCCACTGGAA 59.857 52.381 10.23 10.23 38.33 3.53
907 914 0.765510 AGTCCACCTTCCACTGGAAC 59.234 55.000 6.39 0.00 38.33 3.62
908 915 0.765510 GTCCACCTTCCACTGGAACT 59.234 55.000 6.39 0.00 38.33 3.01
909 916 0.764890 TCCACCTTCCACTGGAACTG 59.235 55.000 6.39 5.29 36.71 3.16
910 917 0.250901 CCACCTTCCACTGGAACTGG 60.251 60.000 6.39 10.06 36.71 4.00
911 918 0.474184 CACCTTCCACTGGAACTGGT 59.526 55.000 13.69 13.69 39.74 4.00
912 919 0.765510 ACCTTCCACTGGAACTGGTC 59.234 55.000 13.69 0.00 36.05 4.02
913 920 1.059913 CCTTCCACTGGAACTGGTCT 58.940 55.000 6.39 0.00 36.71 3.85
914 921 1.002544 CCTTCCACTGGAACTGGTCTC 59.997 57.143 6.39 0.00 36.71 3.36
915 922 0.679505 TTCCACTGGAACTGGTCTCG 59.320 55.000 6.39 0.00 36.71 4.04
916 923 1.185618 TCCACTGGAACTGGTCTCGG 61.186 60.000 0.00 0.00 0.00 4.63
917 924 1.185618 CCACTGGAACTGGTCTCGGA 61.186 60.000 0.00 0.00 0.00 4.55
918 925 0.244994 CACTGGAACTGGTCTCGGAG 59.755 60.000 0.00 0.00 0.00 4.63
919 926 0.112606 ACTGGAACTGGTCTCGGAGA 59.887 55.000 2.97 2.97 0.00 3.71
968 975 0.665068 TGTCCGTCCGAATCAACACG 60.665 55.000 0.00 0.00 0.00 4.49
1040 1048 3.130280 TCCCCAATGATCATCGACATG 57.870 47.619 9.06 2.93 0.00 3.21
1162 1202 4.214327 CTCGCCGCCTTCTCTCCC 62.214 72.222 0.00 0.00 0.00 4.30
1364 1435 2.806237 CCTTCTCGTACCGCCTCC 59.194 66.667 0.00 0.00 0.00 4.30
1425 1496 1.604915 GCCTCCACTTCTTCCCCTC 59.395 63.158 0.00 0.00 0.00 4.30
1676 1762 1.105759 GGAGATGCTGTGGAATGGCC 61.106 60.000 0.00 0.00 37.10 5.36
1999 2094 0.040204 CCCCAGGCCTGAACTTCAAT 59.960 55.000 34.91 0.00 0.00 2.57
2119 2214 2.592194 GTCTTCAACGTCTACATCGCA 58.408 47.619 0.00 0.00 0.00 5.10
2187 2288 4.046462 CAGTCGAACGAGGTCTTTTACAA 58.954 43.478 0.00 0.00 0.00 2.41
2460 2642 1.378250 GCTGGGCTGAGCAGTTCAT 60.378 57.895 6.82 0.00 38.95 2.57
2511 2693 0.177604 GGGATGGAGAGTGTGAGCAG 59.822 60.000 0.00 0.00 0.00 4.24
2569 2751 1.300697 GGACAACTTCCACGAGCGT 60.301 57.895 0.00 0.00 45.10 5.07
3344 8788 3.672295 GAGAAGTGCCTGGCGGAGG 62.672 68.421 14.98 0.00 46.13 4.30
3448 8892 0.386858 ACGAACTCGACGACATGGTG 60.387 55.000 6.05 0.00 43.02 4.17
3646 9141 3.124578 TGTTGCACAATACTCTGCAGA 57.875 42.857 17.19 17.19 44.05 4.26
3696 10780 4.510340 GGTGTCTGAACTTAGCGAGAAAAA 59.490 41.667 0.00 0.00 0.00 1.94
3705 10789 4.036380 ACTTAGCGAGAAAAACCAGTTTGG 59.964 41.667 0.00 0.00 45.02 3.28
3720 10804 2.124122 GTTTGGTGCTAAAACTTGCGG 58.876 47.619 3.25 0.00 35.18 5.69
3735 10819 1.018148 TGCGGCATACATTAAACCGG 58.982 50.000 0.00 0.00 43.99 5.28
3741 10825 3.630312 GGCATACATTAAACCGGTGACAT 59.370 43.478 8.52 0.00 0.00 3.06
3766 10850 0.392461 GGCTTGGGCGTTCATCTACA 60.392 55.000 0.00 0.00 39.81 2.74
3776 10860 4.112634 GCGTTCATCTACAGTGCTAATCA 58.887 43.478 0.00 0.00 0.00 2.57
3777 10861 4.747108 GCGTTCATCTACAGTGCTAATCAT 59.253 41.667 0.00 0.00 0.00 2.45
4228 11312 4.137116 AGGTGAAGCATTATTAGCGTGA 57.863 40.909 0.00 0.00 37.01 4.35
4268 11388 6.597832 TGTGAAACCATCCGGAATTTTATT 57.402 33.333 9.01 0.00 34.36 1.40
4275 11395 7.023197 ACCATCCGGAATTTTATTTTACTCG 57.977 36.000 9.01 0.00 35.59 4.18
4291 11411 6.371809 TTTACTCGCAAAAAGACACTCAAT 57.628 33.333 0.00 0.00 0.00 2.57
4365 11485 0.111446 TCTGGGCGGAAATTGGAACA 59.889 50.000 0.00 0.00 0.00 3.18
4413 11541 1.967319 ACACGTTGAATGAAGTGGCT 58.033 45.000 0.00 0.00 38.78 4.75
4420 11548 2.897436 TGAATGAAGTGGCTGATCTCG 58.103 47.619 0.00 0.00 0.00 4.04
4503 11631 6.314018 TGCGTTCACATTGATTACTTCATTC 58.686 36.000 0.00 0.00 33.34 2.67
4513 11641 9.865321 CATTGATTACTTCATTCCAAACAGAAT 57.135 29.630 0.00 0.00 36.92 2.40
4522 11650 6.720309 TCATTCCAAACAGAATAGATCCACA 58.280 36.000 0.00 0.00 34.69 4.17
4591 11719 0.042967 GCGCGTCGGAATTCAGATTC 60.043 55.000 11.54 5.91 40.78 2.52
4600 11728 4.994852 TCGGAATTCAGATTCGTTTTCACT 59.005 37.500 7.93 0.00 42.12 3.41
4602 11730 4.853743 GGAATTCAGATTCGTTTTCACTGC 59.146 41.667 7.93 0.00 42.12 4.40
4614 11742 1.597742 TTCACTGCTGGAACTCTTGC 58.402 50.000 0.00 0.00 0.00 4.01
4620 11748 0.944311 GCTGGAACTCTTGCGACGAA 60.944 55.000 0.00 0.00 0.00 3.85
4625 11753 2.737252 GGAACTCTTGCGACGAAATCTT 59.263 45.455 0.00 0.00 0.00 2.40
4658 11786 1.531677 CCGCATGGCTATGTTTCAACG 60.532 52.381 12.04 5.33 36.65 4.10
4662 11790 4.423732 GCATGGCTATGTTTCAACGAAAT 58.576 39.130 12.04 0.00 36.65 2.17
4663 11791 4.864247 GCATGGCTATGTTTCAACGAAATT 59.136 37.500 12.04 0.00 36.65 1.82
4664 11792 5.348451 GCATGGCTATGTTTCAACGAAATTT 59.652 36.000 12.04 0.00 36.65 1.82
4665 11793 6.128580 GCATGGCTATGTTTCAACGAAATTTT 60.129 34.615 12.04 0.00 36.65 1.82
4666 11794 7.571059 GCATGGCTATGTTTCAACGAAATTTTT 60.571 33.333 12.04 0.00 36.65 1.94
4703 11833 4.881273 TGGTGCTATATGGTGCAACTTTAG 59.119 41.667 2.04 2.59 46.08 1.85
4713 11843 5.484715 TGGTGCAACTTTAGTACTACATCC 58.515 41.667 2.04 2.34 36.74 3.51
4714 11844 5.247564 TGGTGCAACTTTAGTACTACATCCT 59.752 40.000 2.04 0.00 36.74 3.24
4715 11845 6.171213 GGTGCAACTTTAGTACTACATCCTT 58.829 40.000 0.91 0.00 36.74 3.36
4716 11846 6.653740 GGTGCAACTTTAGTACTACATCCTTT 59.346 38.462 0.91 0.00 36.74 3.11
4717 11847 7.360946 GGTGCAACTTTAGTACTACATCCTTTG 60.361 40.741 0.91 2.48 36.74 2.77
4718 11848 7.172703 GTGCAACTTTAGTACTACATCCTTTGT 59.827 37.037 0.91 0.00 42.62 2.83
4719 11849 7.717875 TGCAACTTTAGTACTACATCCTTTGTT 59.282 33.333 0.91 0.00 39.87 2.83
4720 11850 9.211485 GCAACTTTAGTACTACATCCTTTGTTA 57.789 33.333 0.91 0.00 39.87 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 5.289510 AGGGACCCTTGTACTTCAGAATAT 58.710 41.667 7.44 0.00 0.00 1.28
36 37 3.519913 GAGGGACCCTTGTACTTCAGAAT 59.480 47.826 16.22 0.00 31.80 2.40
37 38 2.904434 GAGGGACCCTTGTACTTCAGAA 59.096 50.000 16.22 0.00 31.80 3.02
38 39 2.537143 GAGGGACCCTTGTACTTCAGA 58.463 52.381 16.22 0.00 31.80 3.27
39 40 1.204941 CGAGGGACCCTTGTACTTCAG 59.795 57.143 16.22 0.00 30.91 3.02
41 42 0.535797 CCGAGGGACCCTTGTACTTC 59.464 60.000 24.17 5.39 33.27 3.01
42 43 1.551019 GCCGAGGGACCCTTGTACTT 61.551 60.000 24.17 0.00 33.27 2.24
43 44 1.988406 GCCGAGGGACCCTTGTACT 60.988 63.158 24.17 0.00 33.27 2.73
44 45 0.685458 TAGCCGAGGGACCCTTGTAC 60.685 60.000 24.17 16.42 33.27 2.90
46 47 1.988406 GTAGCCGAGGGACCCTTGT 60.988 63.158 24.17 11.03 33.27 3.16
47 48 1.265454 AAGTAGCCGAGGGACCCTTG 61.265 60.000 20.10 20.10 31.76 3.61
49 50 0.561680 ATAAGTAGCCGAGGGACCCT 59.438 55.000 14.79 14.79 36.03 4.34
117 121 0.662619 TCTCAACCTGCGCAAAACAG 59.337 50.000 13.05 4.05 34.82 3.16
195 199 0.613260 CACAGCTACTGCCCCTTGTA 59.387 55.000 0.00 0.00 40.80 2.41
230 234 5.070001 CCCCTTTGTGATCAACTCTTTGTA 58.930 41.667 0.00 0.00 34.02 2.41
599 606 3.985279 GCAAAGACCCGTTTAAAACCATC 59.015 43.478 0.00 0.00 0.00 3.51
649 656 4.020128 TGGCCTCTCCTAGTTTTTCTTCTC 60.020 45.833 3.32 0.00 35.26 2.87
684 691 2.040278 CTGAGCCTGAGGGACCCT 59.960 66.667 14.79 14.79 36.03 4.34
685 692 1.904990 GAACTGAGCCTGAGGGACCC 61.905 65.000 0.59 0.59 33.58 4.46
686 693 1.599576 GAACTGAGCCTGAGGGACC 59.400 63.158 0.00 0.00 33.58 4.46
687 694 1.194781 TGGAACTGAGCCTGAGGGAC 61.195 60.000 0.00 0.00 33.58 4.46
688 695 1.158466 TGGAACTGAGCCTGAGGGA 59.842 57.895 0.00 0.00 33.58 4.20
689 696 1.298014 GTGGAACTGAGCCTGAGGG 59.702 63.158 0.00 0.00 0.00 4.30
704 711 6.036470 GTGAGAAAAAGTTTTCCAAGAGTGG 58.964 40.000 11.90 0.00 45.84 4.00
705 712 6.856895 AGTGAGAAAAAGTTTTCCAAGAGTG 58.143 36.000 11.90 0.00 45.84 3.51
706 713 6.887002 AGAGTGAGAAAAAGTTTTCCAAGAGT 59.113 34.615 11.90 0.00 45.84 3.24
707 714 7.192232 CAGAGTGAGAAAAAGTTTTCCAAGAG 58.808 38.462 11.90 0.00 45.84 2.85
708 715 6.095440 CCAGAGTGAGAAAAAGTTTTCCAAGA 59.905 38.462 11.90 0.00 45.84 3.02
709 716 6.268566 CCAGAGTGAGAAAAAGTTTTCCAAG 58.731 40.000 11.90 3.60 45.84 3.61
710 717 5.127031 CCCAGAGTGAGAAAAAGTTTTCCAA 59.873 40.000 11.90 0.01 45.84 3.53
711 718 4.644685 CCCAGAGTGAGAAAAAGTTTTCCA 59.355 41.667 11.90 7.84 45.84 3.53
712 719 4.645136 ACCCAGAGTGAGAAAAAGTTTTCC 59.355 41.667 11.90 5.75 45.84 3.13
713 720 5.504173 CGACCCAGAGTGAGAAAAAGTTTTC 60.504 44.000 8.21 8.21 45.22 2.29
714 721 4.335594 CGACCCAGAGTGAGAAAAAGTTTT 59.664 41.667 0.00 0.00 0.00 2.43
715 722 3.877508 CGACCCAGAGTGAGAAAAAGTTT 59.122 43.478 0.00 0.00 0.00 2.66
716 723 3.134081 TCGACCCAGAGTGAGAAAAAGTT 59.866 43.478 0.00 0.00 0.00 2.66
717 724 2.698797 TCGACCCAGAGTGAGAAAAAGT 59.301 45.455 0.00 0.00 0.00 2.66
718 725 3.005897 TCTCGACCCAGAGTGAGAAAAAG 59.994 47.826 0.00 0.00 39.21 2.27
719 726 2.963101 TCTCGACCCAGAGTGAGAAAAA 59.037 45.455 0.00 0.00 39.21 1.94
720 727 2.594131 TCTCGACCCAGAGTGAGAAAA 58.406 47.619 0.00 0.00 39.21 2.29
721 728 2.287977 TCTCGACCCAGAGTGAGAAA 57.712 50.000 0.00 0.00 39.21 2.52
722 729 2.516227 ATCTCGACCCAGAGTGAGAA 57.484 50.000 0.00 0.00 36.71 2.87
723 730 2.025793 AGAATCTCGACCCAGAGTGAGA 60.026 50.000 0.00 0.00 39.21 3.27
724 731 2.374184 AGAATCTCGACCCAGAGTGAG 58.626 52.381 0.00 0.00 39.21 3.51
725 732 2.516227 AGAATCTCGACCCAGAGTGA 57.484 50.000 0.00 0.00 39.21 3.41
726 733 3.601443 AAAGAATCTCGACCCAGAGTG 57.399 47.619 0.00 0.00 39.21 3.51
727 734 4.773149 AGTAAAAGAATCTCGACCCAGAGT 59.227 41.667 0.00 0.00 39.21 3.24
728 735 5.105752 CAGTAAAAGAATCTCGACCCAGAG 58.894 45.833 0.00 0.00 39.52 3.35
729 736 4.527038 ACAGTAAAAGAATCTCGACCCAGA 59.473 41.667 0.00 0.00 0.00 3.86
730 737 4.627467 CACAGTAAAAGAATCTCGACCCAG 59.373 45.833 0.00 0.00 0.00 4.45
731 738 4.039973 ACACAGTAAAAGAATCTCGACCCA 59.960 41.667 0.00 0.00 0.00 4.51
732 739 4.566987 ACACAGTAAAAGAATCTCGACCC 58.433 43.478 0.00 0.00 0.00 4.46
733 740 6.388278 AGTACACAGTAAAAGAATCTCGACC 58.612 40.000 0.00 0.00 0.00 4.79
734 741 8.235905 ACTAGTACACAGTAAAAGAATCTCGAC 58.764 37.037 0.00 0.00 0.00 4.20
735 742 8.332996 ACTAGTACACAGTAAAAGAATCTCGA 57.667 34.615 0.00 0.00 0.00 4.04
761 768 9.126151 CCGACCTCATATATCATCTACACTATT 57.874 37.037 0.00 0.00 0.00 1.73
762 769 8.495260 TCCGACCTCATATATCATCTACACTAT 58.505 37.037 0.00 0.00 0.00 2.12
763 770 7.858498 TCCGACCTCATATATCATCTACACTA 58.142 38.462 0.00 0.00 0.00 2.74
764 771 6.722328 TCCGACCTCATATATCATCTACACT 58.278 40.000 0.00 0.00 0.00 3.55
765 772 7.255312 GGATCCGACCTCATATATCATCTACAC 60.255 44.444 0.00 0.00 0.00 2.90
766 773 6.773200 GGATCCGACCTCATATATCATCTACA 59.227 42.308 0.00 0.00 0.00 2.74
767 774 6.773200 TGGATCCGACCTCATATATCATCTAC 59.227 42.308 7.39 0.00 0.00 2.59
768 775 6.773200 GTGGATCCGACCTCATATATCATCTA 59.227 42.308 7.39 0.00 0.00 1.98
769 776 5.596361 GTGGATCCGACCTCATATATCATCT 59.404 44.000 7.39 0.00 0.00 2.90
770 777 5.360999 TGTGGATCCGACCTCATATATCATC 59.639 44.000 7.39 0.00 0.00 2.92
771 778 5.272402 TGTGGATCCGACCTCATATATCAT 58.728 41.667 7.39 0.00 0.00 2.45
772 779 4.672899 TGTGGATCCGACCTCATATATCA 58.327 43.478 7.39 0.00 0.00 2.15
773 780 4.098654 CCTGTGGATCCGACCTCATATATC 59.901 50.000 7.39 0.00 33.84 1.63
774 781 4.026744 CCTGTGGATCCGACCTCATATAT 58.973 47.826 7.39 0.00 33.84 0.86
775 782 3.075432 TCCTGTGGATCCGACCTCATATA 59.925 47.826 7.39 0.00 33.84 0.86
808 815 2.091555 GGACTAGAGTCTGGAGGATGGT 60.092 54.545 10.93 0.00 44.20 3.55
811 818 3.011821 TGTTGGACTAGAGTCTGGAGGAT 59.988 47.826 10.93 0.00 44.20 3.24
812 819 2.378886 TGTTGGACTAGAGTCTGGAGGA 59.621 50.000 10.93 0.00 44.20 3.71
813 820 2.808919 TGTTGGACTAGAGTCTGGAGG 58.191 52.381 10.93 0.00 44.20 4.30
814 821 3.430098 GCATGTTGGACTAGAGTCTGGAG 60.430 52.174 10.93 0.00 44.20 3.86
815 822 2.497675 GCATGTTGGACTAGAGTCTGGA 59.502 50.000 10.93 0.00 44.20 3.86
816 823 2.499289 AGCATGTTGGACTAGAGTCTGG 59.501 50.000 1.86 1.55 44.20 3.86
817 824 3.446873 AGAGCATGTTGGACTAGAGTCTG 59.553 47.826 1.86 1.26 44.20 3.51
831 838 1.338973 CTGTTGTTTGGCAGAGCATGT 59.661 47.619 0.00 0.00 34.87 3.21
858 865 0.323725 TGGAAGCTGGGAAGGATTGC 60.324 55.000 0.00 0.00 34.72 3.56
862 869 1.149101 AACTTGGAAGCTGGGAAGGA 58.851 50.000 0.00 0.00 0.00 3.36
863 870 2.001076 AAACTTGGAAGCTGGGAAGG 57.999 50.000 0.00 0.00 0.00 3.46
864 871 3.753797 GACTAAACTTGGAAGCTGGGAAG 59.246 47.826 0.00 0.00 0.00 3.46
865 872 3.137544 TGACTAAACTTGGAAGCTGGGAA 59.862 43.478 0.00 0.00 0.00 3.97
906 913 1.546961 AATTCGTCTCCGAGACCAGT 58.453 50.000 20.57 4.29 45.24 4.00
907 914 2.656560 AAATTCGTCTCCGAGACCAG 57.343 50.000 20.57 9.51 45.24 4.00
908 915 2.670229 CGAAAATTCGTCTCCGAGACCA 60.670 50.000 20.57 7.34 45.24 4.02
909 916 1.918609 CGAAAATTCGTCTCCGAGACC 59.081 52.381 20.57 5.93 45.24 3.85
931 938 1.074951 AGGAACAAGGGAAAGGCGG 59.925 57.895 0.00 0.00 0.00 6.13
1040 1048 2.249557 CTGTGAGCAAGCGTGGATGC 62.250 60.000 0.79 0.00 42.87 3.91
1110 1141 3.554342 CCATGGCGAGGAGGAGGG 61.554 72.222 0.00 0.00 0.00 4.30
1162 1202 1.264288 GCGAGGAAATATTGGAAGCCG 59.736 52.381 0.00 0.00 0.00 5.52
1164 1204 3.854784 GCATGCGAGGAAATATTGGAAGC 60.855 47.826 0.00 0.00 0.00 3.86
1385 1456 0.959372 AGGACGAGGAATGACGACGT 60.959 55.000 0.00 0.00 39.82 4.34
1779 1871 2.729360 CACAGCGTGTCGTTCTCAATTA 59.271 45.455 1.24 0.00 0.00 1.40
1984 2079 2.613977 CGTGAGATTGAAGTTCAGGCCT 60.614 50.000 0.00 0.00 0.00 5.19
2460 2642 1.186200 CTCTCTGGACCATCGGTTCA 58.814 55.000 0.00 0.00 39.18 3.18
2511 2693 4.527157 GCGCGATGTGCAGCTTCC 62.527 66.667 12.10 0.00 46.97 3.46
2569 2751 2.897207 CCCACGCCGATGAGGTTA 59.103 61.111 0.00 0.00 43.70 2.85
3666 10750 3.681897 GCTAAGTTCAGACACCTGTGATG 59.318 47.826 3.94 2.95 41.16 3.07
3667 10751 3.615110 CGCTAAGTTCAGACACCTGTGAT 60.615 47.826 3.94 0.00 41.16 3.06
3673 10757 3.299340 TTCTCGCTAAGTTCAGACACC 57.701 47.619 0.00 0.00 0.00 4.16
3705 10789 2.095466 TGTATGCCGCAAGTTTTAGCAC 60.095 45.455 0.00 0.00 36.06 4.40
3720 10804 4.893424 ATGTCACCGGTTTAATGTATGC 57.107 40.909 2.97 0.00 0.00 3.14
3735 10819 1.202348 GCCCAAGCCAAGTTATGTCAC 59.798 52.381 0.00 0.00 0.00 3.67
3741 10825 0.179015 TGAACGCCCAAGCCAAGTTA 60.179 50.000 0.00 0.00 34.57 2.24
3766 10850 8.737168 ATGTGTATACAAACATGATTAGCACT 57.263 30.769 7.25 0.00 40.84 4.40
3776 10860 7.701078 GTCGTCACTCTATGTGTATACAAACAT 59.299 37.037 7.25 10.33 46.27 2.71
3777 10861 7.025365 GTCGTCACTCTATGTGTATACAAACA 58.975 38.462 7.25 2.69 46.27 2.83
3821 10905 1.149174 CTAGCATTGCCCGTCCCAT 59.851 57.895 4.70 0.00 0.00 4.00
4188 11272 3.119919 ACCTACGAAGCTCACTACGAAAG 60.120 47.826 0.00 0.00 0.00 2.62
4189 11273 2.816087 ACCTACGAAGCTCACTACGAAA 59.184 45.455 0.00 0.00 0.00 3.46
4190 11274 2.161012 CACCTACGAAGCTCACTACGAA 59.839 50.000 0.00 0.00 0.00 3.85
4193 11277 3.760537 CTTCACCTACGAAGCTCACTAC 58.239 50.000 0.00 0.00 36.28 2.73
4201 11285 5.107837 CGCTAATAATGCTTCACCTACGAAG 60.108 44.000 0.00 0.00 44.37 3.79
4255 11375 6.497785 TTGCGAGTAAAATAAAATTCCGGA 57.502 33.333 0.00 0.00 0.00 5.14
4268 11388 5.804692 TTGAGTGTCTTTTTGCGAGTAAA 57.195 34.783 0.00 0.00 0.00 2.01
4309 11429 3.081061 TGCCATAGCGAAGTTTCATTGT 58.919 40.909 0.00 0.00 44.31 2.71
4310 11430 3.127548 AGTGCCATAGCGAAGTTTCATTG 59.872 43.478 0.00 0.00 44.31 2.82
4380 11500 6.606234 TTCAACGTGTATGCACTTTTTAGA 57.394 33.333 12.30 0.61 43.16 2.10
4406 11534 1.094073 GCATGCGAGATCAGCCACTT 61.094 55.000 0.00 0.00 0.00 3.16
4413 11541 1.441732 GCCACATGCATGCGAGATCA 61.442 55.000 26.53 0.00 40.77 2.92
4420 11548 2.100252 AGATTAACAGCCACATGCATGC 59.900 45.455 26.53 11.82 44.83 4.06
4450 11578 4.283467 TGCTAACTGCCACATATACTAGGG 59.717 45.833 0.00 0.00 42.00 3.53
4487 11615 9.865321 ATTCTGTTTGGAATGAAGTAATCAATG 57.135 29.630 0.00 0.00 42.54 2.82
4503 11631 5.003160 TGTGTGTGGATCTATTCTGTTTGG 58.997 41.667 0.00 0.00 0.00 3.28
4513 11641 4.875536 CCGAAATGAATGTGTGTGGATCTA 59.124 41.667 0.00 0.00 0.00 1.98
4515 11643 3.689161 TCCGAAATGAATGTGTGTGGATC 59.311 43.478 0.00 0.00 0.00 3.36
4522 11650 9.541143 AAATTTAAAACTCCGAAATGAATGTGT 57.459 25.926 0.00 0.00 0.00 3.72
4591 11719 2.213499 AGAGTTCCAGCAGTGAAAACG 58.787 47.619 0.00 0.00 0.00 3.60
4614 11742 6.237861 GGGATCTAGTTTCAAAGATTTCGTCG 60.238 42.308 0.00 0.00 32.60 5.12
4620 11748 4.843728 TGCGGGATCTAGTTTCAAAGATT 58.156 39.130 0.00 0.00 32.60 2.40
4625 11753 2.917933 CCATGCGGGATCTAGTTTCAA 58.082 47.619 0.00 0.00 40.01 2.69
4677 11807 3.696051 AGTTGCACCATATAGCACCAAAG 59.304 43.478 0.00 0.00 41.05 2.77
4713 11843 3.642705 GGCACTGCCTTTTCTAACAAAG 58.357 45.455 13.28 0.00 46.69 2.77
4714 11844 3.726291 GGCACTGCCTTTTCTAACAAA 57.274 42.857 13.28 0.00 46.69 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.