Multiple sequence alignment - TraesCS2D01G509700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G509700 chr2D 100.000 3148 0 0 1 3148 601982025 601985172 0.000000e+00 5814.0
1 TraesCS2D01G509700 chr2D 89.177 1580 105 34 832 2384 602712788 602711248 0.000000e+00 1910.0
2 TraesCS2D01G509700 chr2D 90.584 616 55 2 2536 3148 95175817 95176432 0.000000e+00 813.0
3 TraesCS2D01G509700 chr2D 89.103 156 13 2 359 510 296709954 296710109 1.150000e-44 191.0
4 TraesCS2D01G509700 chr2D 84.158 101 14 2 1392 1491 60166894 60166795 2.580000e-16 97.1
5 TraesCS2D01G509700 chr2D 96.296 54 2 0 1439 1492 60078912 60078859 4.320000e-14 89.8
6 TraesCS2D01G509700 chr2D 94.444 54 3 0 1439 1492 60064935 60064882 2.010000e-12 84.2
7 TraesCS2D01G509700 chr2D 71.989 357 71 22 1645 1991 59658516 59658853 9.360000e-11 78.7
8 TraesCS2D01G509700 chr2A 88.202 1924 134 52 510 2393 735351785 735349915 0.000000e+00 2209.0
9 TraesCS2D01G509700 chr2A 85.227 352 39 7 7 352 735352130 735351786 1.800000e-92 350.0
10 TraesCS2D01G509700 chr2A 82.178 101 18 0 1392 1492 60068979 60068879 1.560000e-13 87.9
11 TraesCS2D01G509700 chr2A 91.935 62 4 1 1439 1499 60195338 60195277 5.590000e-13 86.1
12 TraesCS2D01G509700 chr2A 95.918 49 2 0 1726 1774 59873139 59873091 2.600000e-11 80.5
13 TraesCS2D01G509700 chr2A 95.918 49 2 0 1726 1774 59933166 59933118 2.600000e-11 80.5
14 TraesCS2D01G509700 chr2B 88.153 1781 126 42 668 2411 733078274 733076542 0.000000e+00 2041.0
15 TraesCS2D01G509700 chr2B 92.035 113 6 2 6 117 733080785 733080675 4.200000e-34 156.0
16 TraesCS2D01G509700 chr2B 100.000 35 0 0 2364 2398 732141455 732141489 7.290000e-07 65.8
17 TraesCS2D01G509700 chr5D 96.260 615 21 1 2536 3148 499444210 499443596 0.000000e+00 1007.0
18 TraesCS2D01G509700 chr5D 85.737 617 80 8 2537 3148 433202421 433203034 0.000000e+00 645.0
19 TraesCS2D01G509700 chr5D 85.024 621 80 11 2536 3148 459438345 459438960 1.240000e-173 619.0
20 TraesCS2D01G509700 chr5D 90.541 148 13 1 363 510 380078776 380078922 8.910000e-46 195.0
21 TraesCS2D01G509700 chr6D 86.408 618 70 7 2536 3148 322359738 322359130 0.000000e+00 664.0
22 TraesCS2D01G509700 chr6D 76.496 234 45 9 1574 1802 90923950 90924178 5.520000e-23 119.0
23 TraesCS2D01G509700 chr6D 78.378 185 29 7 1300 1474 90922940 90923123 3.320000e-20 110.0
24 TraesCS2D01G509700 chr6D 88.136 59 7 0 1167 1225 392513445 392513503 1.570000e-08 71.3
25 TraesCS2D01G509700 chr6D 83.562 73 12 0 1734 1806 25804292 25804220 5.630000e-08 69.4
26 TraesCS2D01G509700 chr1A 86.039 616 80 5 2536 3148 585908441 585907829 0.000000e+00 656.0
27 TraesCS2D01G509700 chr1A 84.927 617 81 7 2536 3148 431430084 431429476 5.770000e-172 614.0
28 TraesCS2D01G509700 chr7A 85.761 618 77 9 2539 3148 203869763 203869149 0.000000e+00 643.0
29 TraesCS2D01G509700 chr7A 85.096 624 82 9 2532 3148 725702332 725702951 7.410000e-176 627.0
30 TraesCS2D01G509700 chr7A 97.222 36 1 0 1182 1217 152507321 152507356 9.430000e-06 62.1
31 TraesCS2D01G509700 chrUn 91.216 148 12 1 363 510 15884407 15884553 1.910000e-47 200.0
32 TraesCS2D01G509700 chr5A 90.541 148 14 0 363 510 637936736 637936589 2.480000e-46 196.0
33 TraesCS2D01G509700 chr4D 90.604 149 13 1 363 510 447293811 447293663 2.480000e-46 196.0
34 TraesCS2D01G509700 chr4D 89.865 148 15 0 363 510 351463647 351463794 1.150000e-44 191.0
35 TraesCS2D01G509700 chr3D 89.865 148 15 0 363 510 529127162 529127309 1.150000e-44 191.0
36 TraesCS2D01G509700 chr5B 88.816 152 17 0 363 514 14368700 14368851 1.490000e-43 187.0
37 TraesCS2D01G509700 chr4A 89.726 146 14 1 363 508 590484799 590484943 5.360000e-43 185.0
38 TraesCS2D01G509700 chr7D 72.115 416 102 10 1576 1987 75948190 75948595 2.570000e-21 113.0
39 TraesCS2D01G509700 chr7D 94.444 36 2 0 1182 1217 151825014 151825049 4.390000e-04 56.5
40 TraesCS2D01G509700 chr7D 94.444 36 2 0 1182 1217 151931195 151931230 4.390000e-04 56.5
41 TraesCS2D01G509700 chr6B 90.385 52 5 0 1167 1218 585902085 585902136 5.630000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G509700 chr2D 601982025 601985172 3147 False 5814.0 5814 100.0000 1 3148 1 chr2D.!!$F4 3147
1 TraesCS2D01G509700 chr2D 602711248 602712788 1540 True 1910.0 1910 89.1770 832 2384 1 chr2D.!!$R4 1552
2 TraesCS2D01G509700 chr2D 95175817 95176432 615 False 813.0 813 90.5840 2536 3148 1 chr2D.!!$F2 612
3 TraesCS2D01G509700 chr2A 735349915 735352130 2215 True 1279.5 2209 86.7145 7 2393 2 chr2A.!!$R5 2386
4 TraesCS2D01G509700 chr2B 733076542 733080785 4243 True 1098.5 2041 90.0940 6 2411 2 chr2B.!!$R1 2405
5 TraesCS2D01G509700 chr5D 499443596 499444210 614 True 1007.0 1007 96.2600 2536 3148 1 chr5D.!!$R1 612
6 TraesCS2D01G509700 chr5D 433202421 433203034 613 False 645.0 645 85.7370 2537 3148 1 chr5D.!!$F2 611
7 TraesCS2D01G509700 chr5D 459438345 459438960 615 False 619.0 619 85.0240 2536 3148 1 chr5D.!!$F3 612
8 TraesCS2D01G509700 chr6D 322359130 322359738 608 True 664.0 664 86.4080 2536 3148 1 chr6D.!!$R2 612
9 TraesCS2D01G509700 chr1A 585907829 585908441 612 True 656.0 656 86.0390 2536 3148 1 chr1A.!!$R2 612
10 TraesCS2D01G509700 chr1A 431429476 431430084 608 True 614.0 614 84.9270 2536 3148 1 chr1A.!!$R1 612
11 TraesCS2D01G509700 chr7A 203869149 203869763 614 True 643.0 643 85.7610 2539 3148 1 chr7A.!!$R1 609
12 TraesCS2D01G509700 chr7A 725702332 725702951 619 False 627.0 627 85.0960 2532 3148 1 chr7A.!!$F2 616

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
914 2958 0.103572 TCGGGGCACGTAGCTAATTC 59.896 55.0 9.84 0.0 44.79 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2446 4535 0.037232 AGAAAAGTTCCCCTCTCGCG 60.037 55.0 0.0 0.0 0.0 5.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.244292 TCATGGTAGATATGGTCTCTATGTAAC 57.756 37.037 0.00 0.00 38.42 2.50
39 40 9.125026 GGTCTCTATGTAACCATTCAATCAAAT 57.875 33.333 0.00 0.00 33.11 2.32
73 74 8.777865 TCTTAATAAAAGTGGAGACAGACATG 57.222 34.615 0.00 0.00 44.46 3.21
91 92 5.048846 ACATGTAAGTGTCACCTTTCCTT 57.951 39.130 0.00 0.00 0.00 3.36
92 93 5.063880 ACATGTAAGTGTCACCTTTCCTTC 58.936 41.667 0.00 0.00 0.00 3.46
121 2138 9.651913 TTTTTACCAAAGAAATAGGAATGATGC 57.348 29.630 0.00 0.00 0.00 3.91
124 2141 5.361857 ACCAAAGAAATAGGAATGATGCCAG 59.638 40.000 0.00 0.00 0.00 4.85
142 2159 2.338500 CAGCGAGAGTGGGTTTTCTAC 58.662 52.381 0.00 0.00 0.00 2.59
143 2160 1.968493 AGCGAGAGTGGGTTTTCTACA 59.032 47.619 0.00 0.00 0.00 2.74
160 2177 3.996363 TCTACAATGCACATGATATCCGC 59.004 43.478 0.00 0.00 0.00 5.54
162 2179 1.881324 CAATGCACATGATATCCGCCA 59.119 47.619 0.00 0.00 0.00 5.69
166 2183 1.611410 GCACATGATATCCGCCATCCA 60.611 52.381 0.00 0.00 0.00 3.41
173 2190 2.727123 TATCCGCCATCCAATGTTGT 57.273 45.000 0.00 0.00 0.00 3.32
205 2223 9.072294 GGTTCATATTACGTTTCTGATTTTTGG 57.928 33.333 0.00 0.00 0.00 3.28
210 2228 7.961325 ATTACGTTTCTGATTTTTGGCAATT 57.039 28.000 0.00 0.00 0.00 2.32
214 2232 6.758886 ACGTTTCTGATTTTTGGCAATTGTTA 59.241 30.769 7.40 0.00 0.00 2.41
216 2234 7.741216 CGTTTCTGATTTTTGGCAATTGTTATG 59.259 33.333 7.40 0.00 0.00 1.90
225 2243 5.888691 TGGCAATTGTTATGTCGTGTATT 57.111 34.783 7.40 0.00 0.00 1.89
227 2245 6.777101 TGGCAATTGTTATGTCGTGTATTAC 58.223 36.000 7.40 0.00 0.00 1.89
230 2248 8.552865 GGCAATTGTTATGTCGTGTATTACATA 58.447 33.333 7.40 0.00 37.50 2.29
279 2297 7.011016 TCGAAATGTATCATAGCGATTTGTTGT 59.989 33.333 0.00 0.00 35.39 3.32
286 2308 2.693797 AGCGATTTGTTGTGAGCAAG 57.306 45.000 0.00 0.00 34.94 4.01
292 2314 2.418368 TTGTTGTGAGCAAGTCCACT 57.582 45.000 0.00 0.00 34.94 4.00
295 2317 2.139118 GTTGTGAGCAAGTCCACTCTC 58.861 52.381 0.00 0.00 34.94 3.20
324 2346 6.092955 AGTTCACTCTTATTCGTTGGTACA 57.907 37.500 0.00 0.00 0.00 2.90
345 2367 5.229423 ACACAACCAAACATTATGATGCAC 58.771 37.500 0.00 0.00 36.72 4.57
346 2368 5.010922 ACACAACCAAACATTATGATGCACT 59.989 36.000 0.00 0.00 36.72 4.40
347 2369 5.346551 CACAACCAAACATTATGATGCACTG 59.653 40.000 0.00 0.00 36.72 3.66
348 2370 5.010922 ACAACCAAACATTATGATGCACTGT 59.989 36.000 0.00 0.00 36.72 3.55
349 2371 6.208402 ACAACCAAACATTATGATGCACTGTA 59.792 34.615 0.00 0.00 36.72 2.74
350 2372 6.832520 ACCAAACATTATGATGCACTGTAA 57.167 33.333 0.00 0.00 36.72 2.41
351 2373 7.225784 ACCAAACATTATGATGCACTGTAAA 57.774 32.000 0.00 0.00 36.72 2.01
352 2374 7.315142 ACCAAACATTATGATGCACTGTAAAG 58.685 34.615 0.00 0.00 36.72 1.85
353 2375 6.254157 CCAAACATTATGATGCACTGTAAAGC 59.746 38.462 0.00 0.00 36.72 3.51
354 2376 6.513806 AACATTATGATGCACTGTAAAGCA 57.486 33.333 0.00 0.00 45.92 3.91
355 2377 6.513806 ACATTATGATGCACTGTAAAGCAA 57.486 33.333 0.00 0.00 44.88 3.91
356 2378 6.923012 ACATTATGATGCACTGTAAAGCAAA 58.077 32.000 0.00 0.00 44.88 3.68
357 2379 7.377398 ACATTATGATGCACTGTAAAGCAAAA 58.623 30.769 0.00 0.00 44.88 2.44
358 2380 7.871973 ACATTATGATGCACTGTAAAGCAAAAA 59.128 29.630 0.00 0.00 44.88 1.94
377 2399 1.963172 AAAAAGGACTGGGTGTCGAC 58.037 50.000 9.11 9.11 46.24 4.20
378 2400 0.108019 AAAAGGACTGGGTGTCGACC 59.892 55.000 14.12 4.20 46.24 4.79
386 2408 4.309950 GGTGTCGACCCGTTGGCT 62.310 66.667 14.12 0.00 36.03 4.75
387 2409 3.041940 GTGTCGACCCGTTGGCTG 61.042 66.667 14.12 0.00 33.59 4.85
388 2410 4.308458 TGTCGACCCGTTGGCTGG 62.308 66.667 14.12 0.00 33.59 4.85
410 2432 3.060615 CTGGAGTTGCTGCCAGCC 61.061 66.667 15.29 0.00 44.53 4.85
411 2433 4.666253 TGGAGTTGCTGCCAGCCC 62.666 66.667 15.29 8.54 41.51 5.19
412 2434 4.666253 GGAGTTGCTGCCAGCCCA 62.666 66.667 15.29 0.00 41.51 5.36
413 2435 3.368571 GAGTTGCTGCCAGCCCAC 61.369 66.667 15.29 11.04 41.51 4.61
414 2436 4.982701 AGTTGCTGCCAGCCCACC 62.983 66.667 15.29 0.00 41.51 4.61
422 2444 4.760047 CCAGCCCACCCGAGTTCG 62.760 72.222 0.00 0.00 39.44 3.95
423 2445 3.691342 CAGCCCACCCGAGTTCGA 61.691 66.667 2.59 0.00 43.02 3.71
424 2446 3.382832 AGCCCACCCGAGTTCGAG 61.383 66.667 2.59 0.00 43.02 4.04
425 2447 3.692406 GCCCACCCGAGTTCGAGT 61.692 66.667 2.59 0.00 43.02 4.18
426 2448 2.572284 CCCACCCGAGTTCGAGTC 59.428 66.667 2.59 0.00 43.02 3.36
427 2449 2.572284 CCACCCGAGTTCGAGTCC 59.428 66.667 2.59 0.00 43.02 3.85
428 2450 2.572284 CACCCGAGTTCGAGTCCC 59.428 66.667 2.59 0.00 43.02 4.46
429 2451 3.060615 ACCCGAGTTCGAGTCCCG 61.061 66.667 2.59 0.00 43.02 5.14
430 2452 3.823330 CCCGAGTTCGAGTCCCGG 61.823 72.222 2.59 0.00 43.02 5.73
431 2453 4.493747 CCGAGTTCGAGTCCCGGC 62.494 72.222 0.00 0.00 43.02 6.13
432 2454 3.744719 CGAGTTCGAGTCCCGGCA 61.745 66.667 0.00 0.00 43.02 5.69
433 2455 2.126031 GAGTTCGAGTCCCGGCAC 60.126 66.667 0.00 0.00 39.14 5.01
434 2456 2.915659 AGTTCGAGTCCCGGCACA 60.916 61.111 0.00 0.00 39.14 4.57
435 2457 2.432628 GTTCGAGTCCCGGCACAG 60.433 66.667 0.00 0.00 39.14 3.66
436 2458 2.599281 TTCGAGTCCCGGCACAGA 60.599 61.111 0.00 0.00 39.14 3.41
437 2459 2.927580 TTCGAGTCCCGGCACAGAC 61.928 63.158 0.00 0.00 39.14 3.51
438 2460 4.778415 CGAGTCCCGGCACAGACG 62.778 72.222 0.00 0.00 36.52 4.18
439 2461 3.681835 GAGTCCCGGCACAGACGT 61.682 66.667 0.00 0.00 36.52 4.34
440 2462 3.916392 GAGTCCCGGCACAGACGTG 62.916 68.421 0.00 0.00 46.56 4.49
448 2470 3.406361 CACAGACGTGCGGTGCTC 61.406 66.667 0.00 0.00 35.96 4.26
449 2471 3.911698 ACAGACGTGCGGTGCTCA 61.912 61.111 0.00 0.00 0.00 4.26
450 2472 3.406361 CAGACGTGCGGTGCTCAC 61.406 66.667 0.00 0.00 0.00 3.51
456 2478 3.923864 TGCGGTGCTCACGGAGTT 61.924 61.111 11.07 0.00 41.61 3.01
457 2479 2.665185 GCGGTGCTCACGGAGTTT 60.665 61.111 11.07 0.00 41.61 2.66
458 2480 2.668280 GCGGTGCTCACGGAGTTTC 61.668 63.158 11.07 0.00 41.61 2.78
459 2481 1.006102 CGGTGCTCACGGAGTTTCT 60.006 57.895 1.90 0.00 41.61 2.52
460 2482 0.600255 CGGTGCTCACGGAGTTTCTT 60.600 55.000 1.90 0.00 41.61 2.52
461 2483 1.149148 GGTGCTCACGGAGTTTCTTC 58.851 55.000 3.38 0.00 41.61 2.87
462 2484 1.270358 GGTGCTCACGGAGTTTCTTCT 60.270 52.381 3.38 0.00 41.61 2.85
463 2485 2.029290 GGTGCTCACGGAGTTTCTTCTA 60.029 50.000 3.38 0.00 41.61 2.10
464 2486 3.368531 GGTGCTCACGGAGTTTCTTCTAT 60.369 47.826 3.38 0.00 41.61 1.98
465 2487 4.142227 GGTGCTCACGGAGTTTCTTCTATA 60.142 45.833 3.38 0.00 41.61 1.31
466 2488 5.408356 GTGCTCACGGAGTTTCTTCTATAA 58.592 41.667 3.38 0.00 41.61 0.98
467 2489 5.867716 GTGCTCACGGAGTTTCTTCTATAAA 59.132 40.000 3.38 0.00 41.61 1.40
468 2490 6.367969 GTGCTCACGGAGTTTCTTCTATAAAA 59.632 38.462 3.38 0.00 41.61 1.52
469 2491 6.932400 TGCTCACGGAGTTTCTTCTATAAAAA 59.068 34.615 3.38 0.00 41.61 1.94
488 2510 4.929819 AAAAATGCCAACGAAGGTTAGT 57.070 36.364 0.00 0.00 33.72 2.24
490 2512 6.584185 AAAAATGCCAACGAAGGTTAGTAT 57.416 33.333 0.00 0.00 33.72 2.12
491 2513 6.584185 AAAATGCCAACGAAGGTTAGTATT 57.416 33.333 0.00 0.00 33.17 1.89
492 2514 6.584185 AAATGCCAACGAAGGTTAGTATTT 57.416 33.333 0.00 0.00 36.10 1.40
493 2515 5.560966 ATGCCAACGAAGGTTAGTATTTG 57.439 39.130 0.00 0.00 33.72 2.32
494 2516 3.754323 TGCCAACGAAGGTTAGTATTTGG 59.246 43.478 0.00 0.00 33.72 3.28
495 2517 3.128068 GCCAACGAAGGTTAGTATTTGGG 59.872 47.826 0.00 0.00 33.72 4.12
496 2518 4.329392 CCAACGAAGGTTAGTATTTGGGT 58.671 43.478 0.00 0.00 33.72 4.51
497 2519 4.763279 CCAACGAAGGTTAGTATTTGGGTT 59.237 41.667 0.00 0.00 33.72 4.11
498 2520 5.335348 CCAACGAAGGTTAGTATTTGGGTTG 60.335 44.000 0.00 0.00 33.72 3.77
499 2521 4.329392 ACGAAGGTTAGTATTTGGGTTGG 58.671 43.478 0.00 0.00 0.00 3.77
500 2522 4.202493 ACGAAGGTTAGTATTTGGGTTGGT 60.202 41.667 0.00 0.00 0.00 3.67
501 2523 4.393990 CGAAGGTTAGTATTTGGGTTGGTC 59.606 45.833 0.00 0.00 0.00 4.02
502 2524 5.567430 GAAGGTTAGTATTTGGGTTGGTCT 58.433 41.667 0.00 0.00 0.00 3.85
503 2525 5.175388 AGGTTAGTATTTGGGTTGGTCTC 57.825 43.478 0.00 0.00 0.00 3.36
504 2526 4.600111 AGGTTAGTATTTGGGTTGGTCTCA 59.400 41.667 0.00 0.00 0.00 3.27
505 2527 5.253096 AGGTTAGTATTTGGGTTGGTCTCAT 59.747 40.000 0.00 0.00 0.00 2.90
522 2548 9.442047 TTGGTCTCATTTTTAAAGCAAGAAAAA 57.558 25.926 5.28 5.28 38.51 1.94
524 2550 8.551205 GGTCTCATTTTTAAAGCAAGAAAAAGG 58.449 33.333 7.58 7.58 37.79 3.11
527 2553 8.273780 TCATTTTTAAAGCAAGAAAAAGGCAA 57.726 26.923 8.56 0.00 37.79 4.52
591 2623 3.844577 ATTAGTGTACAGTCGTTCGCT 57.155 42.857 6.44 0.00 37.13 4.93
592 2624 4.952262 ATTAGTGTACAGTCGTTCGCTA 57.048 40.909 6.44 0.00 35.26 4.26
593 2625 4.952262 TTAGTGTACAGTCGTTCGCTAT 57.048 40.909 6.44 0.00 36.01 2.97
594 2626 6.609237 ATTAGTGTACAGTCGTTCGCTATA 57.391 37.500 6.44 0.00 36.01 1.31
595 2627 4.270178 AGTGTACAGTCGTTCGCTATAC 57.730 45.455 0.00 0.00 32.20 1.47
596 2628 3.024991 GTGTACAGTCGTTCGCTATACG 58.975 50.000 0.00 0.00 45.62 3.06
612 2644 6.719915 GCTATACGAAGTGATATATGACGC 57.280 41.667 0.00 0.00 45.73 5.19
613 2645 5.681982 GCTATACGAAGTGATATATGACGCC 59.318 44.000 0.00 0.00 45.73 5.68
620 2652 7.282450 ACGAAGTGATATATGACGCCATATAGA 59.718 37.037 15.34 4.03 44.00 1.98
630 2662 6.785488 TGACGCCATATAGATTTGCTAAAG 57.215 37.500 0.00 0.00 31.66 1.85
631 2663 5.179368 TGACGCCATATAGATTTGCTAAAGC 59.821 40.000 0.00 0.00 42.50 3.51
647 2679 3.762407 AAAGCAAATTTTAAGGGCCGT 57.238 38.095 0.00 0.00 0.00 5.68
649 2681 1.275010 AGCAAATTTTAAGGGCCGTGG 59.725 47.619 0.90 0.00 0.00 4.94
652 2684 3.840468 CAAATTTTAAGGGCCGTGGTAC 58.160 45.455 0.90 0.00 0.00 3.34
656 2688 2.188062 TTAAGGGCCGTGGTACTTTG 57.812 50.000 0.90 0.00 0.00 2.77
662 2694 2.277084 GGCCGTGGTACTTTGTCATAG 58.723 52.381 0.00 0.00 0.00 2.23
665 2697 2.671396 CCGTGGTACTTTGTCATAGCAC 59.329 50.000 4.79 4.79 43.26 4.40
666 2698 3.322369 CGTGGTACTTTGTCATAGCACA 58.678 45.455 12.40 0.00 45.70 4.57
671 2703 6.255887 GTGGTACTTTGTCATAGCACACTATC 59.744 42.308 8.66 0.00 45.08 2.08
742 2776 9.553418 GTAAAACAAACAACATTGCAAAATTCT 57.447 25.926 1.71 0.00 33.52 2.40
773 2807 4.701956 ACTATGAATCCAAAAGCAACGG 57.298 40.909 0.00 0.00 0.00 4.44
790 2828 2.726691 GGACGACGAATGCACGGTG 61.727 63.158 0.00 3.15 37.61 4.94
799 2837 2.356135 GAATGCACGGTGTGGTAGAAT 58.644 47.619 10.24 0.00 33.64 2.40
855 2899 6.424883 TGGAAAAACAAAAGGGTACTACAGA 58.575 36.000 0.00 0.00 0.00 3.41
875 2919 0.527817 GAGTCAGCGACATAACCGGG 60.528 60.000 6.32 0.00 34.60 5.73
876 2920 2.171725 GTCAGCGACATAACCGGGC 61.172 63.158 6.32 0.00 32.09 6.13
914 2958 0.103572 TCGGGGCACGTAGCTAATTC 59.896 55.000 9.84 0.00 44.79 2.17
915 2959 0.179094 CGGGGCACGTAGCTAATTCA 60.179 55.000 0.00 0.00 44.79 2.57
916 2960 1.741055 CGGGGCACGTAGCTAATTCAA 60.741 52.381 0.00 0.00 44.79 2.69
944 2988 1.183030 TAGCCGGCACACACTACACT 61.183 55.000 31.54 5.27 0.00 3.55
945 2989 1.183030 AGCCGGCACACACTACACTA 61.183 55.000 31.54 0.00 0.00 2.74
946 2990 0.736325 GCCGGCACACACTACACTAG 60.736 60.000 24.80 0.00 0.00 2.57
948 2992 1.135373 CCGGCACACACTACACTAGAG 60.135 57.143 0.00 0.00 0.00 2.43
952 2996 3.119779 GGCACACACTACACTAGAGACTC 60.120 52.174 0.00 0.00 0.00 3.36
953 2997 3.754323 GCACACACTACACTAGAGACTCT 59.246 47.826 10.47 10.47 0.00 3.24
978 3036 4.023707 AGTCAGAAAATTCTCTTTGTGCGG 60.024 41.667 0.00 0.00 34.74 5.69
1113 3181 1.447314 CTACGACGAAACCTGCCCC 60.447 63.158 0.00 0.00 0.00 5.80
1229 3297 2.412065 GCTTCGTCAATGCAAGTGTCTC 60.412 50.000 0.00 0.00 31.21 3.36
1251 3319 0.098200 TCATACGCTCGTCACCTTCG 59.902 55.000 0.00 0.00 0.00 3.79
1371 3439 1.021202 CGGTGCCAAACAAGAACTCA 58.979 50.000 0.00 0.00 0.00 3.41
1485 3553 2.050351 CGTGACTCCGTTGTCGCT 60.050 61.111 13.87 0.00 43.10 4.93
1512 3583 2.676839 CAGCACCATACAAGCTTCAGAG 59.323 50.000 0.00 0.00 36.26 3.35
1554 3625 7.958053 AACTACGTACTTGCTTAATTCTGTT 57.042 32.000 0.00 0.00 0.00 3.16
1555 3626 9.480053 AAACTACGTACTTGCTTAATTCTGTTA 57.520 29.630 0.00 0.00 0.00 2.41
1607 3684 0.103208 CTACATGGGACGTGGAGCTC 59.897 60.000 4.71 4.71 0.00 4.09
1982 4059 1.741032 GCACTCAGACCAGCAGCTC 60.741 63.158 0.00 0.00 0.00 4.09
2027 4104 2.494445 CAGATCACCGCCTACGCA 59.506 61.111 0.00 0.00 38.22 5.24
2057 4134 2.202756 GCCGGCTTCTTCGACGAT 60.203 61.111 22.15 0.00 37.71 3.73
2066 4143 0.099968 TCTTCGACGATTTCCGCGAT 59.900 50.000 8.23 0.00 42.66 4.58
2069 4146 2.230940 CGACGATTTCCGCGATGCT 61.231 57.895 8.23 0.00 43.32 3.79
2093 4170 3.757248 GAAGATGGGCGGCATCGGT 62.757 63.158 12.47 5.92 36.79 4.69
2124 4201 4.729918 CCAGTGGGCAGGTCAGGC 62.730 72.222 0.00 0.00 0.00 4.85
2150 4227 1.871126 GCAGGAAGGCCAACTGAAGC 61.871 60.000 21.15 6.25 36.29 3.86
2151 4228 1.302832 AGGAAGGCCAACTGAAGCG 60.303 57.895 5.01 0.00 36.29 4.68
2154 4231 1.578206 GAAGGCCAACTGAAGCGGAC 61.578 60.000 5.01 0.00 0.00 4.79
2156 4233 1.192146 AGGCCAACTGAAGCGGACTA 61.192 55.000 5.01 0.00 35.96 2.59
2160 4237 2.767505 CCAACTGAAGCGGACTAAACT 58.232 47.619 0.00 0.00 0.00 2.66
2161 4238 2.480419 CCAACTGAAGCGGACTAAACTG 59.520 50.000 0.00 0.00 0.00 3.16
2162 4239 3.131396 CAACTGAAGCGGACTAAACTGT 58.869 45.455 0.00 0.00 0.00 3.55
2163 4240 4.304110 CAACTGAAGCGGACTAAACTGTA 58.696 43.478 0.00 0.00 0.00 2.74
2164 4241 4.803098 ACTGAAGCGGACTAAACTGTAT 57.197 40.909 0.00 0.00 0.00 2.29
2165 4242 4.495422 ACTGAAGCGGACTAAACTGTATG 58.505 43.478 0.00 0.00 0.00 2.39
2174 4251 4.562757 GGACTAAACTGTATGTGTGCCAGA 60.563 45.833 0.00 0.00 0.00 3.86
2185 4262 2.035961 TGTGTGCCAGACTTCTCAGTAC 59.964 50.000 0.00 0.00 31.22 2.73
2187 4264 1.269998 GTGCCAGACTTCTCAGTACGT 59.730 52.381 0.00 0.00 31.22 3.57
2188 4265 1.269723 TGCCAGACTTCTCAGTACGTG 59.730 52.381 0.00 0.00 31.22 4.49
2189 4266 1.269998 GCCAGACTTCTCAGTACGTGT 59.730 52.381 0.00 0.00 31.22 4.49
2190 4267 2.922758 GCCAGACTTCTCAGTACGTGTG 60.923 54.545 0.00 0.00 31.22 3.82
2191 4268 2.552743 CCAGACTTCTCAGTACGTGTGA 59.447 50.000 0.00 0.00 31.22 3.58
2192 4269 3.191581 CCAGACTTCTCAGTACGTGTGAT 59.808 47.826 0.00 0.00 31.22 3.06
2193 4270 4.407818 CAGACTTCTCAGTACGTGTGATC 58.592 47.826 0.00 0.00 31.22 2.92
2194 4271 4.072839 AGACTTCTCAGTACGTGTGATCA 58.927 43.478 0.00 0.00 31.22 2.92
2197 4274 3.831715 TCTCAGTACGTGTGATCAGTG 57.168 47.619 0.00 0.00 0.00 3.66
2198 4275 3.146847 TCTCAGTACGTGTGATCAGTGT 58.853 45.455 0.00 0.00 0.00 3.55
2199 4276 3.058224 TCTCAGTACGTGTGATCAGTGTG 60.058 47.826 0.00 0.00 0.00 3.82
2201 4278 3.816523 TCAGTACGTGTGATCAGTGTGTA 59.183 43.478 0.00 0.00 0.00 2.90
2203 4280 2.065993 ACGTGTGATCAGTGTGTAGC 57.934 50.000 0.00 0.00 0.00 3.58
2205 4282 1.067565 CGTGTGATCAGTGTGTAGCCT 60.068 52.381 0.00 0.00 0.00 4.58
2223 4300 2.098934 GCCTTGTTGTGTGTGTGATGAA 59.901 45.455 0.00 0.00 0.00 2.57
2224 4301 3.694734 CCTTGTTGTGTGTGTGATGAAC 58.305 45.455 0.00 0.00 0.00 3.18
2225 4302 3.378112 CCTTGTTGTGTGTGTGATGAACT 59.622 43.478 0.00 0.00 0.00 3.01
2227 4304 3.604582 TGTTGTGTGTGTGATGAACTGA 58.395 40.909 0.00 0.00 0.00 3.41
2229 4306 4.035441 TGTTGTGTGTGTGATGAACTGATG 59.965 41.667 0.00 0.00 0.00 3.07
2230 4307 4.070630 TGTGTGTGTGATGAACTGATGA 57.929 40.909 0.00 0.00 0.00 2.92
2231 4308 4.644498 TGTGTGTGTGATGAACTGATGAT 58.356 39.130 0.00 0.00 0.00 2.45
2232 4309 4.453136 TGTGTGTGTGATGAACTGATGATG 59.547 41.667 0.00 0.00 0.00 3.07
2233 4310 4.453478 GTGTGTGTGATGAACTGATGATGT 59.547 41.667 0.00 0.00 0.00 3.06
2234 4311 4.453136 TGTGTGTGATGAACTGATGATGTG 59.547 41.667 0.00 0.00 0.00 3.21
2235 4312 4.453478 GTGTGTGATGAACTGATGATGTGT 59.547 41.667 0.00 0.00 0.00 3.72
2236 4313 5.639082 GTGTGTGATGAACTGATGATGTGTA 59.361 40.000 0.00 0.00 0.00 2.90
2237 4314 5.870978 TGTGTGATGAACTGATGATGTGTAG 59.129 40.000 0.00 0.00 0.00 2.74
2238 4315 5.871524 GTGTGATGAACTGATGATGTGTAGT 59.128 40.000 0.00 0.00 0.00 2.73
2239 4316 6.035435 GTGTGATGAACTGATGATGTGTAGTC 59.965 42.308 0.00 0.00 0.00 2.59
2240 4317 6.101997 GTGATGAACTGATGATGTGTAGTCA 58.898 40.000 0.00 0.00 0.00 3.41
2241 4318 6.255237 GTGATGAACTGATGATGTGTAGTCAG 59.745 42.308 0.00 0.00 42.80 3.51
2249 4326 2.299867 TGATGTGTAGTCAGCTGCTTCA 59.700 45.455 9.47 10.74 0.00 3.02
2265 4342 2.602217 GCTTCAAACGGTTGCAGTACTG 60.602 50.000 18.93 18.93 31.38 2.74
2285 4371 8.765219 AGTACTGCTTGCAACGAATAATAATAG 58.235 33.333 0.00 0.00 0.00 1.73
2307 4393 6.798427 AGTAAGATCAGATGAACCTGCTTA 57.202 37.500 0.00 0.00 34.28 3.09
2309 4395 7.624549 AGTAAGATCAGATGAACCTGCTTAAA 58.375 34.615 0.00 0.00 34.28 1.52
2322 4410 4.142093 ACCTGCTTAAATGGATGCATGTTC 60.142 41.667 2.46 0.00 32.11 3.18
2323 4411 4.098960 CCTGCTTAAATGGATGCATGTTCT 59.901 41.667 2.46 0.00 34.79 3.01
2325 4413 6.040209 TGCTTAAATGGATGCATGTTCTTT 57.960 33.333 2.46 1.20 0.00 2.52
2337 4425 4.508492 TGCATGTTCTTTGATTTTGTGCAG 59.492 37.500 0.00 0.00 35.41 4.41
2340 4428 6.346040 GCATGTTCTTTGATTTTGTGCAGTAC 60.346 38.462 0.00 0.00 0.00 2.73
2342 4430 6.804677 TGTTCTTTGATTTTGTGCAGTACAT 58.195 32.000 0.00 0.00 39.48 2.29
2343 4431 6.696583 TGTTCTTTGATTTTGTGCAGTACATG 59.303 34.615 0.00 0.00 39.48 3.21
2358 4446 6.878389 TGCAGTACATGTAAGTTTGATGATCA 59.122 34.615 7.25 0.00 0.00 2.92
2361 4449 9.154847 CAGTACATGTAAGTTTGATGATCAGAA 57.845 33.333 7.25 0.00 0.00 3.02
2362 4451 9.155975 AGTACATGTAAGTTTGATGATCAGAAC 57.844 33.333 7.25 6.43 0.00 3.01
2405 4494 6.459670 AACCCGTTCTTTAAATCAAAGTGT 57.540 33.333 0.00 0.00 43.58 3.55
2407 4496 6.500910 ACCCGTTCTTTAAATCAAAGTGTTC 58.499 36.000 0.00 0.00 43.58 3.18
2408 4497 6.320418 ACCCGTTCTTTAAATCAAAGTGTTCT 59.680 34.615 0.00 0.00 43.58 3.01
2409 4498 6.636850 CCCGTTCTTTAAATCAAAGTGTTCTG 59.363 38.462 0.00 0.00 43.58 3.02
2410 4499 7.414436 CCGTTCTTTAAATCAAAGTGTTCTGA 58.586 34.615 0.00 0.00 43.58 3.27
2411 4500 7.587757 CCGTTCTTTAAATCAAAGTGTTCTGAG 59.412 37.037 0.00 0.00 43.58 3.35
2412 4501 8.335356 CGTTCTTTAAATCAAAGTGTTCTGAGA 58.665 33.333 0.00 0.00 43.58 3.27
2416 4505 9.787532 CTTTAAATCAAAGTGTTCTGAGAAACA 57.212 29.630 0.00 0.00 39.10 2.83
2420 4509 3.710233 GTGTTCTGAGAAACACGCG 57.290 52.632 3.53 3.53 46.66 6.01
2421 4510 0.928229 GTGTTCTGAGAAACACGCGT 59.072 50.000 5.58 5.58 46.66 6.01
2422 4511 0.927537 TGTTCTGAGAAACACGCGTG 59.072 50.000 35.99 35.99 34.31 5.34
2423 4512 0.232303 GTTCTGAGAAACACGCGTGG 59.768 55.000 39.21 23.04 34.19 4.94
2424 4513 0.179094 TTCTGAGAAACACGCGTGGT 60.179 50.000 39.21 34.01 34.19 4.16
2425 4514 0.179094 TCTGAGAAACACGCGTGGTT 60.179 50.000 40.22 40.22 44.30 3.67
2426 4515 1.067364 TCTGAGAAACACGCGTGGTTA 59.933 47.619 39.66 24.70 41.20 2.85
2427 4516 1.191647 CTGAGAAACACGCGTGGTTAC 59.808 52.381 39.66 32.76 41.20 2.50
2428 4517 0.509929 GAGAAACACGCGTGGTTACC 59.490 55.000 39.66 28.91 41.20 2.85
2429 4518 1.202320 GAAACACGCGTGGTTACCG 59.798 57.895 39.66 15.75 41.20 4.02
2430 4519 2.753237 GAAACACGCGTGGTTACCGC 62.753 60.000 39.66 24.57 41.20 5.68
2436 4525 3.475774 CGTGGTTACCGCAGCGAC 61.476 66.667 18.75 6.46 32.88 5.19
2437 4526 2.048503 GTGGTTACCGCAGCGACT 60.049 61.111 18.75 2.91 33.65 4.18
2438 4527 1.213537 GTGGTTACCGCAGCGACTA 59.786 57.895 18.75 0.95 33.65 2.59
2439 4528 0.179119 GTGGTTACCGCAGCGACTAT 60.179 55.000 18.75 0.84 33.65 2.12
2440 4529 0.533491 TGGTTACCGCAGCGACTATT 59.467 50.000 18.75 0.00 0.00 1.73
2441 4530 1.066716 TGGTTACCGCAGCGACTATTT 60.067 47.619 18.75 0.00 0.00 1.40
2442 4531 1.326548 GGTTACCGCAGCGACTATTTG 59.673 52.381 18.75 0.00 0.00 2.32
2443 4532 1.003851 TTACCGCAGCGACTATTTGC 58.996 50.000 18.75 0.00 34.58 3.68
2446 4535 4.955238 GCAGCGACTATTTGCGAC 57.045 55.556 0.00 0.00 37.19 5.19
2447 4536 1.013323 GCAGCGACTATTTGCGACG 60.013 57.895 0.00 0.00 37.19 5.12
2449 4538 2.055095 GCGACTATTTGCGACGCG 60.055 61.111 16.14 3.53 39.90 6.01
2450 4539 2.502123 GCGACTATTTGCGACGCGA 61.502 57.895 15.93 11.15 39.90 5.87
2451 4540 1.548985 CGACTATTTGCGACGCGAG 59.451 57.895 15.93 11.78 0.00 5.03
2452 4541 0.860203 CGACTATTTGCGACGCGAGA 60.860 55.000 15.93 3.58 0.00 4.04
2453 4542 0.840729 GACTATTTGCGACGCGAGAG 59.159 55.000 15.93 15.94 0.00 3.20
2454 4543 0.525668 ACTATTTGCGACGCGAGAGG 60.526 55.000 15.93 9.17 0.00 3.69
2463 4552 4.695560 CGCGAGAGGGGAACTTTT 57.304 55.556 0.00 0.00 40.85 2.27
2464 4553 2.457080 CGCGAGAGGGGAACTTTTC 58.543 57.895 0.00 0.00 40.85 2.29
2465 4554 0.037232 CGCGAGAGGGGAACTTTTCT 60.037 55.000 0.00 0.00 40.85 2.52
2466 4555 1.728068 GCGAGAGGGGAACTTTTCTC 58.272 55.000 0.00 0.00 34.21 2.87
2467 4556 1.002087 GCGAGAGGGGAACTTTTCTCA 59.998 52.381 0.00 0.00 36.68 3.27
2468 4557 2.550208 GCGAGAGGGGAACTTTTCTCAA 60.550 50.000 0.00 0.00 36.68 3.02
2469 4558 3.330267 CGAGAGGGGAACTTTTCTCAAG 58.670 50.000 1.85 0.00 36.68 3.02
2470 4559 3.680490 GAGAGGGGAACTTTTCTCAAGG 58.320 50.000 0.00 0.00 36.83 3.61
2471 4560 2.163509 GAGGGGAACTTTTCTCAAGGC 58.836 52.381 0.00 0.00 0.00 4.35
2472 4561 1.499007 AGGGGAACTTTTCTCAAGGCA 59.501 47.619 0.00 0.00 0.00 4.75
2473 4562 1.889170 GGGGAACTTTTCTCAAGGCAG 59.111 52.381 0.00 0.00 0.00 4.85
2474 4563 1.889170 GGGAACTTTTCTCAAGGCAGG 59.111 52.381 0.00 0.00 0.00 4.85
2475 4564 1.889170 GGAACTTTTCTCAAGGCAGGG 59.111 52.381 0.00 0.00 0.00 4.45
2476 4565 1.889170 GAACTTTTCTCAAGGCAGGGG 59.111 52.381 0.00 0.00 0.00 4.79
2477 4566 1.149101 ACTTTTCTCAAGGCAGGGGA 58.851 50.000 0.00 0.00 0.00 4.81
2478 4567 1.499007 ACTTTTCTCAAGGCAGGGGAA 59.501 47.619 0.00 0.00 0.00 3.97
2479 4568 1.889170 CTTTTCTCAAGGCAGGGGAAC 59.111 52.381 0.00 0.00 0.00 3.62
2480 4569 1.149101 TTTCTCAAGGCAGGGGAACT 58.851 50.000 0.00 0.00 0.00 3.01
2481 4570 1.149101 TTCTCAAGGCAGGGGAACTT 58.851 50.000 0.00 0.00 0.00 2.66
2482 4571 1.149101 TCTCAAGGCAGGGGAACTTT 58.851 50.000 0.00 0.00 0.00 2.66
2483 4572 1.499007 TCTCAAGGCAGGGGAACTTTT 59.501 47.619 0.00 0.00 0.00 2.27
2484 4573 1.889170 CTCAAGGCAGGGGAACTTTTC 59.111 52.381 0.00 0.00 0.00 2.29
2485 4574 1.499007 TCAAGGCAGGGGAACTTTTCT 59.501 47.619 0.00 0.00 0.00 2.52
2486 4575 1.889170 CAAGGCAGGGGAACTTTTCTC 59.111 52.381 0.00 0.00 0.00 2.87
2487 4576 1.149101 AGGCAGGGGAACTTTTCTCA 58.851 50.000 0.00 0.00 0.00 3.27
2488 4577 1.499007 AGGCAGGGGAACTTTTCTCAA 59.501 47.619 0.00 0.00 0.00 3.02
2489 4578 1.889170 GGCAGGGGAACTTTTCTCAAG 59.111 52.381 0.00 0.00 0.00 3.02
2490 4579 1.889170 GCAGGGGAACTTTTCTCAAGG 59.111 52.381 0.00 0.00 0.00 3.61
2491 4580 1.889170 CAGGGGAACTTTTCTCAAGGC 59.111 52.381 0.00 0.00 0.00 4.35
2492 4581 1.499007 AGGGGAACTTTTCTCAAGGCA 59.501 47.619 0.00 0.00 0.00 4.75
2493 4582 1.889170 GGGGAACTTTTCTCAAGGCAG 59.111 52.381 0.00 0.00 0.00 4.85
2494 4583 2.587522 GGGAACTTTTCTCAAGGCAGT 58.412 47.619 0.00 0.00 0.00 4.40
2495 4584 2.959030 GGGAACTTTTCTCAAGGCAGTT 59.041 45.455 0.00 0.00 0.00 3.16
2496 4585 3.004839 GGGAACTTTTCTCAAGGCAGTTC 59.995 47.826 0.00 0.00 41.73 3.01
2497 4586 3.304057 GGAACTTTTCTCAAGGCAGTTCG 60.304 47.826 0.00 0.00 42.86 3.95
2498 4587 3.194005 ACTTTTCTCAAGGCAGTTCGA 57.806 42.857 0.00 0.00 0.00 3.71
2499 4588 3.744660 ACTTTTCTCAAGGCAGTTCGAT 58.255 40.909 0.00 0.00 0.00 3.59
2500 4589 3.748568 ACTTTTCTCAAGGCAGTTCGATC 59.251 43.478 0.00 0.00 0.00 3.69
2501 4590 1.996292 TTCTCAAGGCAGTTCGATCG 58.004 50.000 9.36 9.36 0.00 3.69
2502 4591 0.173481 TCTCAAGGCAGTTCGATCGG 59.827 55.000 16.41 0.00 0.00 4.18
2503 4592 0.108615 CTCAAGGCAGTTCGATCGGT 60.109 55.000 16.41 0.00 0.00 4.69
2504 4593 0.389817 TCAAGGCAGTTCGATCGGTG 60.390 55.000 16.41 11.55 0.00 4.94
2505 4594 1.741770 AAGGCAGTTCGATCGGTGC 60.742 57.895 22.14 22.14 35.07 5.01
2506 4595 2.125512 GGCAGTTCGATCGGTGCT 60.126 61.111 26.22 15.82 36.15 4.40
2507 4596 2.456119 GGCAGTTCGATCGGTGCTG 61.456 63.158 26.22 23.81 36.15 4.41
2508 4597 3.084579 CAGTTCGATCGGTGCTGC 58.915 61.111 16.41 0.00 0.00 5.25
2509 4598 1.446792 CAGTTCGATCGGTGCTGCT 60.447 57.895 16.41 2.06 0.00 4.24
2510 4599 0.179137 CAGTTCGATCGGTGCTGCTA 60.179 55.000 16.41 0.00 0.00 3.49
2511 4600 0.101399 AGTTCGATCGGTGCTGCTAG 59.899 55.000 16.41 0.00 0.00 3.42
2512 4601 1.226974 TTCGATCGGTGCTGCTAGC 60.227 57.895 16.41 8.10 42.82 3.42
2513 4602 2.629050 TTCGATCGGTGCTGCTAGCC 62.629 60.000 16.41 0.00 41.51 3.93
2514 4603 2.501128 GATCGGTGCTGCTAGCCA 59.499 61.111 13.29 0.06 41.51 4.75
2515 4604 1.884926 GATCGGTGCTGCTAGCCAC 60.885 63.158 13.29 13.62 41.51 5.01
2516 4605 2.303549 GATCGGTGCTGCTAGCCACT 62.304 60.000 19.41 4.57 41.51 4.00
2517 4606 2.303549 ATCGGTGCTGCTAGCCACTC 62.304 60.000 19.41 9.90 41.51 3.51
2518 4607 2.124942 GGTGCTGCTAGCCACTCC 60.125 66.667 19.41 14.27 41.51 3.85
2519 4608 2.510238 GTGCTGCTAGCCACTCCG 60.510 66.667 13.29 0.00 41.51 4.63
2520 4609 2.997315 TGCTGCTAGCCACTCCGT 60.997 61.111 13.29 0.00 41.51 4.69
2521 4610 2.202810 GCTGCTAGCCACTCCGTC 60.203 66.667 13.29 0.00 34.48 4.79
2522 4611 2.496817 CTGCTAGCCACTCCGTCC 59.503 66.667 13.29 0.00 0.00 4.79
2523 4612 2.283604 TGCTAGCCACTCCGTCCA 60.284 61.111 13.29 0.00 0.00 4.02
2524 4613 2.290122 CTGCTAGCCACTCCGTCCAG 62.290 65.000 13.29 0.00 0.00 3.86
2525 4614 3.082579 GCTAGCCACTCCGTCCAGG 62.083 68.421 2.29 0.00 42.97 4.45
2531 4620 4.658786 ACTCCGTCCAGGCCCCTT 62.659 66.667 0.00 0.00 40.77 3.95
2532 4621 2.365105 CTCCGTCCAGGCCCCTTA 60.365 66.667 0.00 0.00 40.77 2.69
2533 4622 2.686106 TCCGTCCAGGCCCCTTAC 60.686 66.667 0.00 0.00 40.77 2.34
2534 4623 4.157120 CCGTCCAGGCCCCTTACG 62.157 72.222 0.00 4.69 34.53 3.18
2589 4678 9.095065 GCTCAAAATGAAGCATCAAAAGAATAT 57.905 29.630 0.00 0.00 39.49 1.28
2612 4701 0.870393 CATGATGAGCATACACCCGC 59.130 55.000 0.00 0.00 34.82 6.13
2614 4703 1.337384 TGATGAGCATACACCCGCCT 61.337 55.000 0.00 0.00 0.00 5.52
2660 4750 2.734079 CCAACACCAACACACACAAAAC 59.266 45.455 0.00 0.00 0.00 2.43
2663 4755 1.982223 CACCAACACACACAAAACACG 59.018 47.619 0.00 0.00 0.00 4.49
2757 4858 2.057316 GATCAGATTCGTGATCGGCAG 58.943 52.381 9.07 0.00 42.58 4.85
2826 4927 2.673833 GACGACGAGGTTCTTCAACAT 58.326 47.619 0.00 0.00 33.70 2.71
2988 5091 2.010145 TCGCCAATGCTAGACTTCAC 57.990 50.000 0.00 0.00 34.43 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.470805 GGTTACATAGAGACCATATCTACCATG 58.529 40.741 0.00 0.00 38.00 3.66
2 3 8.177456 TGGTTACATAGAGACCATATCTACCAT 58.823 37.037 0.00 0.00 38.47 3.55
26 27 7.843490 AGATTGCTTGAATTTGATTGAATGG 57.157 32.000 0.00 0.00 0.00 3.16
39 40 9.295825 TCTCCACTTTTATTAAGATTGCTTGAA 57.704 29.630 0.00 0.00 35.56 2.69
73 74 6.694877 AAAAGAAGGAAAGGTGACACTTAC 57.305 37.500 5.39 0.00 0.00 2.34
105 2122 3.144506 CGCTGGCATCATTCCTATTTCT 58.855 45.455 0.00 0.00 0.00 2.52
118 2135 2.129555 AAACCCACTCTCGCTGGCAT 62.130 55.000 0.00 0.00 0.00 4.40
121 2138 0.035458 AGAAAACCCACTCTCGCTGG 59.965 55.000 0.00 0.00 0.00 4.85
124 2141 2.450609 TGTAGAAAACCCACTCTCGC 57.549 50.000 0.00 0.00 0.00 5.03
142 2159 1.881324 TGGCGGATATCATGTGCATTG 59.119 47.619 4.83 0.00 0.00 2.82
143 2160 2.275134 TGGCGGATATCATGTGCATT 57.725 45.000 4.83 0.00 0.00 3.56
160 2177 6.520272 TGAACCTTAAAACAACATTGGATGG 58.480 36.000 0.00 0.00 33.60 3.51
198 2215 5.988561 ACACGACATAACAATTGCCAAAAAT 59.011 32.000 5.05 0.00 0.00 1.82
205 2223 9.923786 TTATGTAATACACGACATAACAATTGC 57.076 29.630 5.05 0.00 41.40 3.56
254 2272 7.110628 CACAACAAATCGCTATGATACATTTCG 59.889 37.037 0.00 0.00 35.84 3.46
255 2273 8.122330 TCACAACAAATCGCTATGATACATTTC 58.878 33.333 0.00 0.00 35.84 2.17
279 2297 2.170397 TGTTTGAGAGTGGACTTGCTCA 59.830 45.455 0.00 0.00 35.74 4.26
286 2308 4.192317 AGTGAACTTGTTTGAGAGTGGAC 58.808 43.478 0.00 0.00 0.00 4.02
292 2314 6.984474 ACGAATAAGAGTGAACTTGTTTGAGA 59.016 34.615 0.00 0.00 36.53 3.27
295 2317 6.632834 CCAACGAATAAGAGTGAACTTGTTTG 59.367 38.462 0.00 0.00 37.93 2.93
324 2346 5.010922 ACAGTGCATCATAATGTTTGGTTGT 59.989 36.000 0.00 0.00 35.18 3.32
329 2351 6.807720 TGCTTTACAGTGCATCATAATGTTTG 59.192 34.615 0.00 0.00 35.18 2.93
358 2380 1.476291 GGTCGACACCCAGTCCTTTTT 60.476 52.381 18.91 0.00 44.66 1.94
359 2381 0.108019 GGTCGACACCCAGTCCTTTT 59.892 55.000 18.91 0.00 44.66 2.27
360 2382 1.752833 GGTCGACACCCAGTCCTTT 59.247 57.895 18.91 0.00 44.66 3.11
361 2383 3.468063 GGTCGACACCCAGTCCTT 58.532 61.111 18.91 0.00 44.66 3.36
369 2391 4.309950 AGCCAACGGGTCGACACC 62.310 66.667 18.91 14.79 42.90 4.16
370 2392 3.041940 CAGCCAACGGGTCGACAC 61.042 66.667 18.91 13.91 36.17 3.67
371 2393 4.308458 CCAGCCAACGGGTCGACA 62.308 66.667 18.91 0.00 36.17 4.35
385 2407 3.060615 GCAACTCCAGCTGCCCAG 61.061 66.667 8.66 6.10 31.39 4.45
386 2408 3.573229 AGCAACTCCAGCTGCCCA 61.573 61.111 8.66 0.00 41.61 5.36
391 2413 2.033757 CTGGCAGCAACTCCAGCT 59.966 61.111 0.00 0.00 42.79 4.24
394 2416 4.666253 GGGCTGGCAGCAACTCCA 62.666 66.667 37.49 0.00 44.75 3.86
395 2417 4.666253 TGGGCTGGCAGCAACTCC 62.666 66.667 37.49 28.87 44.75 3.85
396 2418 3.368571 GTGGGCTGGCAGCAACTC 61.369 66.667 37.49 25.65 44.75 3.01
397 2419 4.982701 GGTGGGCTGGCAGCAACT 62.983 66.667 37.49 0.00 44.75 3.16
405 2427 4.760047 CGAACTCGGGTGGGCTGG 62.760 72.222 0.00 0.00 35.37 4.85
406 2428 3.649277 CTCGAACTCGGGTGGGCTG 62.649 68.421 0.00 0.00 40.29 4.85
407 2429 3.382832 CTCGAACTCGGGTGGGCT 61.383 66.667 0.00 0.00 40.29 5.19
413 2435 3.823330 CCGGGACTCGAACTCGGG 61.823 72.222 18.93 0.00 46.21 5.14
415 2437 3.744719 TGCCGGGACTCGAACTCG 61.745 66.667 2.18 4.83 42.43 4.18
416 2438 2.126031 GTGCCGGGACTCGAACTC 60.126 66.667 20.19 0.00 42.43 3.01
417 2439 2.915659 TGTGCCGGGACTCGAACT 60.916 61.111 27.28 0.00 42.43 3.01
418 2440 2.432628 CTGTGCCGGGACTCGAAC 60.433 66.667 27.28 0.00 42.43 3.95
419 2441 2.599281 TCTGTGCCGGGACTCGAA 60.599 61.111 27.28 5.61 42.43 3.71
420 2442 3.371063 GTCTGTGCCGGGACTCGA 61.371 66.667 27.28 19.44 42.43 4.04
421 2443 4.778415 CGTCTGTGCCGGGACTCG 62.778 72.222 27.28 22.37 38.88 4.18
422 2444 3.681835 ACGTCTGTGCCGGGACTC 61.682 66.667 27.28 15.55 0.00 3.36
423 2445 3.991051 CACGTCTGTGCCGGGACT 61.991 66.667 27.28 2.89 39.67 3.85
432 2454 3.911698 TGAGCACCGCACGTCTGT 61.912 61.111 0.00 0.00 0.00 3.41
433 2455 3.406361 GTGAGCACCGCACGTCTG 61.406 66.667 0.00 0.00 0.00 3.51
438 2460 4.664677 ACTCCGTGAGCACCGCAC 62.665 66.667 1.36 0.00 32.04 5.34
439 2461 3.454587 AAACTCCGTGAGCACCGCA 62.455 57.895 1.36 0.00 32.04 5.69
440 2462 2.665185 AAACTCCGTGAGCACCGC 60.665 61.111 1.36 0.00 32.04 5.68
441 2463 0.600255 AAGAAACTCCGTGAGCACCG 60.600 55.000 1.36 0.00 32.04 4.94
442 2464 1.149148 GAAGAAACTCCGTGAGCACC 58.851 55.000 1.36 0.00 32.04 5.01
443 2465 2.156343 AGAAGAAACTCCGTGAGCAC 57.844 50.000 1.36 0.00 32.04 4.40
444 2466 5.654603 TTATAGAAGAAACTCCGTGAGCA 57.345 39.130 1.36 0.00 32.04 4.26
445 2467 6.963049 TTTTATAGAAGAAACTCCGTGAGC 57.037 37.500 1.36 0.00 32.04 4.26
467 2489 4.929819 ACTAACCTTCGTTGGCATTTTT 57.070 36.364 0.00 0.00 33.96 1.94
468 2490 6.584185 AATACTAACCTTCGTTGGCATTTT 57.416 33.333 0.00 0.00 33.96 1.82
469 2491 6.386654 CAAATACTAACCTTCGTTGGCATTT 58.613 36.000 0.00 0.00 37.07 2.32
470 2492 5.105917 CCAAATACTAACCTTCGTTGGCATT 60.106 40.000 0.00 0.00 33.96 3.56
471 2493 4.398044 CCAAATACTAACCTTCGTTGGCAT 59.602 41.667 0.00 0.00 33.96 4.40
472 2494 3.754323 CCAAATACTAACCTTCGTTGGCA 59.246 43.478 0.00 0.00 33.96 4.92
473 2495 3.128068 CCCAAATACTAACCTTCGTTGGC 59.872 47.826 0.00 0.00 33.96 4.52
474 2496 4.329392 ACCCAAATACTAACCTTCGTTGG 58.671 43.478 0.00 0.00 36.57 3.77
475 2497 5.335348 CCAACCCAAATACTAACCTTCGTTG 60.335 44.000 0.00 0.00 33.17 4.10
476 2498 4.763279 CCAACCCAAATACTAACCTTCGTT 59.237 41.667 0.00 0.00 35.90 3.85
477 2499 4.202493 ACCAACCCAAATACTAACCTTCGT 60.202 41.667 0.00 0.00 0.00 3.85
478 2500 4.329392 ACCAACCCAAATACTAACCTTCG 58.671 43.478 0.00 0.00 0.00 3.79
479 2501 5.567430 AGACCAACCCAAATACTAACCTTC 58.433 41.667 0.00 0.00 0.00 3.46
480 2502 5.073965 TGAGACCAACCCAAATACTAACCTT 59.926 40.000 0.00 0.00 0.00 3.50
481 2503 4.600111 TGAGACCAACCCAAATACTAACCT 59.400 41.667 0.00 0.00 0.00 3.50
482 2504 4.913784 TGAGACCAACCCAAATACTAACC 58.086 43.478 0.00 0.00 0.00 2.85
483 2505 7.462571 AAATGAGACCAACCCAAATACTAAC 57.537 36.000 0.00 0.00 0.00 2.34
484 2506 8.485578 AAAAATGAGACCAACCCAAATACTAA 57.514 30.769 0.00 0.00 0.00 2.24
485 2507 9.589461 TTAAAAATGAGACCAACCCAAATACTA 57.411 29.630 0.00 0.00 0.00 1.82
486 2508 6.994421 AAAAATGAGACCAACCCAAATACT 57.006 33.333 0.00 0.00 0.00 2.12
487 2509 9.203421 CTTTAAAAATGAGACCAACCCAAATAC 57.797 33.333 0.00 0.00 0.00 1.89
488 2510 7.875554 GCTTTAAAAATGAGACCAACCCAAATA 59.124 33.333 0.00 0.00 0.00 1.40
489 2511 6.710295 GCTTTAAAAATGAGACCAACCCAAAT 59.290 34.615 0.00 0.00 0.00 2.32
490 2512 6.052360 GCTTTAAAAATGAGACCAACCCAAA 58.948 36.000 0.00 0.00 0.00 3.28
491 2513 5.129485 TGCTTTAAAAATGAGACCAACCCAA 59.871 36.000 0.00 0.00 0.00 4.12
492 2514 4.651503 TGCTTTAAAAATGAGACCAACCCA 59.348 37.500 0.00 0.00 0.00 4.51
493 2515 5.208463 TGCTTTAAAAATGAGACCAACCC 57.792 39.130 0.00 0.00 0.00 4.11
494 2516 6.512297 TCTTGCTTTAAAAATGAGACCAACC 58.488 36.000 0.00 0.00 0.00 3.77
495 2517 8.419076 TTTCTTGCTTTAAAAATGAGACCAAC 57.581 30.769 0.00 0.00 0.00 3.77
496 2518 9.442047 TTTTTCTTGCTTTAAAAATGAGACCAA 57.558 25.926 0.00 0.00 31.46 3.67
497 2519 9.097257 CTTTTTCTTGCTTTAAAAATGAGACCA 57.903 29.630 0.00 0.00 34.90 4.02
498 2520 8.551205 CCTTTTTCTTGCTTTAAAAATGAGACC 58.449 33.333 0.00 0.00 34.90 3.85
499 2521 8.064222 GCCTTTTTCTTGCTTTAAAAATGAGAC 58.936 33.333 0.00 0.00 34.90 3.36
500 2522 7.768120 TGCCTTTTTCTTGCTTTAAAAATGAGA 59.232 29.630 0.00 0.00 34.90 3.27
501 2523 7.918643 TGCCTTTTTCTTGCTTTAAAAATGAG 58.081 30.769 0.00 0.00 34.90 2.90
502 2524 7.856145 TGCCTTTTTCTTGCTTTAAAAATGA 57.144 28.000 0.00 0.00 34.90 2.57
503 2525 8.960075 CATTGCCTTTTTCTTGCTTTAAAAATG 58.040 29.630 0.00 0.00 34.90 2.32
504 2526 8.901793 TCATTGCCTTTTTCTTGCTTTAAAAAT 58.098 25.926 0.00 0.00 34.90 1.82
505 2527 8.273780 TCATTGCCTTTTTCTTGCTTTAAAAA 57.726 26.923 0.00 0.00 34.39 1.94
540 2566 2.031516 GACACTGCTCACGCATGCT 61.032 57.895 17.13 0.00 46.74 3.79
541 2567 1.964290 GAGACACTGCTCACGCATGC 61.964 60.000 7.91 7.91 46.74 4.06
542 2568 0.389556 AGAGACACTGCTCACGCATG 60.390 55.000 0.00 0.00 46.74 4.06
543 2569 0.108898 GAGAGACACTGCTCACGCAT 60.109 55.000 0.00 0.00 46.74 4.73
545 2571 0.805614 TAGAGAGACACTGCTCACGC 59.194 55.000 0.00 0.00 37.37 5.34
546 2572 3.560902 TTTAGAGAGACACTGCTCACG 57.439 47.619 0.00 0.00 37.37 4.35
547 2573 7.891183 TTTTATTTAGAGAGACACTGCTCAC 57.109 36.000 0.00 0.00 37.37 3.51
589 2621 5.681982 GGCGTCATATATCACTTCGTATAGC 59.318 44.000 0.00 0.00 0.00 2.97
591 2623 6.746745 TGGCGTCATATATCACTTCGTATA 57.253 37.500 0.00 0.00 0.00 1.47
592 2624 5.638596 TGGCGTCATATATCACTTCGTAT 57.361 39.130 0.00 0.00 0.00 3.06
593 2625 5.638596 ATGGCGTCATATATCACTTCGTA 57.361 39.130 0.00 0.00 0.00 3.43
594 2626 4.521130 ATGGCGTCATATATCACTTCGT 57.479 40.909 0.00 0.00 0.00 3.85
595 2627 7.639945 TCTATATGGCGTCATATATCACTTCG 58.360 38.462 25.64 14.55 43.74 3.79
596 2628 9.973450 AATCTATATGGCGTCATATATCACTTC 57.027 33.333 25.64 0.00 43.74 3.01
598 2630 9.755804 CAAATCTATATGGCGTCATATATCACT 57.244 33.333 25.64 11.51 43.74 3.41
599 2631 8.491152 GCAAATCTATATGGCGTCATATATCAC 58.509 37.037 25.64 11.62 43.74 3.06
600 2632 8.424133 AGCAAATCTATATGGCGTCATATATCA 58.576 33.333 25.64 17.25 43.74 2.15
601 2633 8.824159 AGCAAATCTATATGGCGTCATATATC 57.176 34.615 25.64 12.94 43.74 1.63
604 2636 9.102757 CTTTAGCAAATCTATATGGCGTCATAT 57.897 33.333 24.69 24.69 45.55 1.78
608 2640 5.622378 GCTTTAGCAAATCTATATGGCGTC 58.378 41.667 0.00 0.00 41.59 5.19
609 2641 5.613358 GCTTTAGCAAATCTATATGGCGT 57.387 39.130 0.00 0.00 41.59 5.68
630 2662 1.001520 ACCACGGCCCTTAAAATTTGC 59.998 47.619 0.00 0.00 0.00 3.68
631 2663 3.508402 AGTACCACGGCCCTTAAAATTTG 59.492 43.478 0.00 0.00 0.00 2.32
632 2664 3.770046 AGTACCACGGCCCTTAAAATTT 58.230 40.909 0.00 0.00 0.00 1.82
643 2675 1.664151 GCTATGACAAAGTACCACGGC 59.336 52.381 0.00 0.00 0.00 5.68
647 2679 4.617253 AGTGTGCTATGACAAAGTACCA 57.383 40.909 0.00 0.00 0.00 3.25
649 2681 8.480643 AAAGATAGTGTGCTATGACAAAGTAC 57.519 34.615 0.00 0.00 37.99 2.73
652 2684 7.965107 GGAAAAAGATAGTGTGCTATGACAAAG 59.035 37.037 0.00 0.00 37.99 2.77
656 2688 7.617041 AAGGAAAAAGATAGTGTGCTATGAC 57.383 36.000 0.00 0.00 37.99 3.06
753 2787 4.662145 GTCCGTTGCTTTTGGATTCATAG 58.338 43.478 0.00 0.00 33.63 2.23
763 2797 1.070175 CATTCGTCGTCCGTTGCTTTT 60.070 47.619 0.00 0.00 37.94 2.27
773 2807 2.019951 ACACCGTGCATTCGTCGTC 61.020 57.895 0.00 0.00 0.00 4.20
790 2828 4.520492 CCCAGCCAAATGATATTCTACCAC 59.480 45.833 0.00 0.00 0.00 4.16
847 2891 3.329929 TGTCGCTGACTCTCTGTAGTA 57.670 47.619 9.49 0.00 33.15 1.82
848 2892 2.186532 TGTCGCTGACTCTCTGTAGT 57.813 50.000 9.49 0.00 33.15 2.73
849 2893 4.496673 GGTTATGTCGCTGACTCTCTGTAG 60.497 50.000 9.49 0.00 33.15 2.74
855 2899 0.456221 CCGGTTATGTCGCTGACTCT 59.544 55.000 0.00 1.63 33.15 3.24
875 2919 5.221661 CCCGAGGTATTTATAGGGGATATGC 60.222 48.000 0.00 0.00 35.16 3.14
876 2920 6.420913 CCCGAGGTATTTATAGGGGATATG 57.579 45.833 0.00 0.00 35.16 1.78
944 2988 9.747898 AGAGAATTTTCTGACTTAGAGTCTCTA 57.252 33.333 5.41 5.41 45.27 2.43
945 2989 8.650143 AGAGAATTTTCTGACTTAGAGTCTCT 57.350 34.615 7.68 7.68 45.27 3.10
946 2990 9.705290 AAAGAGAATTTTCTGACTTAGAGTCTC 57.295 33.333 0.00 0.00 45.27 3.36
948 2992 9.267084 ACAAAGAGAATTTTCTGACTTAGAGTC 57.733 33.333 0.00 1.21 45.26 3.36
952 2996 6.794158 CGCACAAAGAGAATTTTCTGACTTAG 59.206 38.462 0.00 0.00 37.73 2.18
953 2997 6.293407 CCGCACAAAGAGAATTTTCTGACTTA 60.293 38.462 0.00 0.00 37.73 2.24
978 3036 5.398603 TTGATAATGCCTAGAGCTAGCTC 57.601 43.478 33.21 33.21 44.23 4.09
1113 3181 0.932123 CGATGATGTCCAGAGCGTCG 60.932 60.000 0.00 0.00 34.11 5.12
1229 3297 0.456221 AGGTGACGAGCGTATGAAGG 59.544 55.000 0.00 0.00 0.00 3.46
1251 3319 4.935808 TCCTGCCGAAAAGAGAAATCTTAC 59.064 41.667 0.00 0.00 0.00 2.34
1371 3439 4.057428 AGCTCGAAGCCGCGAAGT 62.057 61.111 8.23 0.00 43.77 3.01
1422 3490 2.672996 GACACCACCTTGGCGCAT 60.673 61.111 10.83 0.00 42.67 4.73
1485 3553 2.083774 GCTTGTATGGTGCTGCTTACA 58.916 47.619 0.00 1.60 0.00 2.41
1512 3583 6.421202 ACGTAGTTTTGAGTTCTGATCTGAAC 59.579 38.462 28.56 28.56 37.78 3.18
1554 3625 5.529581 TGCAGTTGATCGGAGTTCATATA 57.470 39.130 0.00 0.00 0.00 0.86
1555 3626 4.375272 CTGCAGTTGATCGGAGTTCATAT 58.625 43.478 5.25 0.00 0.00 1.78
1592 3669 3.461773 CCGAGCTCCACGTCCCAT 61.462 66.667 8.47 0.00 0.00 4.00
1607 3684 4.452733 GTCCCGTCCCTTCTGCCG 62.453 72.222 0.00 0.00 0.00 5.69
1692 3769 1.876322 CCCTTGATCGAGAATGCCTC 58.124 55.000 11.89 0.00 38.55 4.70
1793 3870 1.735559 GGGTGCGGTCTCGTTGTAC 60.736 63.158 0.00 0.00 38.89 2.90
1982 4059 2.125350 GAGCCTCCACCGCTGAAG 60.125 66.667 0.00 0.00 36.48 3.02
2014 4091 4.201679 CGGATGCGTAGGCGGTGA 62.202 66.667 0.00 0.00 44.10 4.02
2057 4134 0.176910 TCACCATAGCATCGCGGAAA 59.823 50.000 6.13 0.00 0.00 3.13
2066 4143 0.179048 CGCCCATCTTCACCATAGCA 60.179 55.000 0.00 0.00 0.00 3.49
2069 4146 1.148273 GCCGCCCATCTTCACCATA 59.852 57.895 0.00 0.00 0.00 2.74
2111 4188 2.853542 TTCAGCCTGACCTGCCCA 60.854 61.111 0.00 0.00 32.87 5.36
2124 4201 0.538057 TTGGCCTTCCTGCAGTTCAG 60.538 55.000 13.81 5.04 42.49 3.02
2150 4227 2.671396 GGCACACATACAGTTTAGTCCG 59.329 50.000 0.00 0.00 0.00 4.79
2151 4228 3.670625 TGGCACACATACAGTTTAGTCC 58.329 45.455 0.00 0.00 0.00 3.85
2154 4231 4.569943 AGTCTGGCACACATACAGTTTAG 58.430 43.478 0.00 0.00 34.02 1.85
2156 4233 3.492102 AGTCTGGCACACATACAGTTT 57.508 42.857 0.00 0.00 34.02 2.66
2160 4237 2.632512 TGAGAAGTCTGGCACACATACA 59.367 45.455 0.00 0.00 0.00 2.29
2161 4238 3.257393 CTGAGAAGTCTGGCACACATAC 58.743 50.000 0.00 0.00 0.00 2.39
2162 4239 2.899900 ACTGAGAAGTCTGGCACACATA 59.100 45.455 0.00 0.00 0.00 2.29
2163 4240 1.696336 ACTGAGAAGTCTGGCACACAT 59.304 47.619 0.00 0.00 0.00 3.21
2164 4241 1.123077 ACTGAGAAGTCTGGCACACA 58.877 50.000 0.00 0.00 0.00 3.72
2165 4242 2.678324 GTACTGAGAAGTCTGGCACAC 58.322 52.381 0.00 0.00 0.00 3.82
2174 4251 3.821600 ACTGATCACACGTACTGAGAAGT 59.178 43.478 0.00 0.00 0.00 3.01
2185 4262 1.067565 AGGCTACACACTGATCACACG 60.068 52.381 0.00 0.00 0.00 4.49
2187 4264 2.368548 ACAAGGCTACACACTGATCACA 59.631 45.455 0.00 0.00 0.00 3.58
2188 4265 3.045601 ACAAGGCTACACACTGATCAC 57.954 47.619 0.00 0.00 0.00 3.06
2189 4266 3.181455 ACAACAAGGCTACACACTGATCA 60.181 43.478 0.00 0.00 0.00 2.92
2190 4267 3.187227 CACAACAAGGCTACACACTGATC 59.813 47.826 0.00 0.00 0.00 2.92
2191 4268 3.141398 CACAACAAGGCTACACACTGAT 58.859 45.455 0.00 0.00 0.00 2.90
2192 4269 2.093181 ACACAACAAGGCTACACACTGA 60.093 45.455 0.00 0.00 0.00 3.41
2193 4270 2.032054 CACACAACAAGGCTACACACTG 59.968 50.000 0.00 0.00 0.00 3.66
2194 4271 2.288666 CACACAACAAGGCTACACACT 58.711 47.619 0.00 0.00 0.00 3.55
2197 4274 2.014128 ACACACACAACAAGGCTACAC 58.986 47.619 0.00 0.00 0.00 2.90
2198 4275 2.013400 CACACACACAACAAGGCTACA 58.987 47.619 0.00 0.00 0.00 2.74
2199 4276 2.285083 TCACACACACAACAAGGCTAC 58.715 47.619 0.00 0.00 0.00 3.58
2201 4278 1.677576 CATCACACACACAACAAGGCT 59.322 47.619 0.00 0.00 0.00 4.58
2203 4280 3.378112 AGTTCATCACACACACAACAAGG 59.622 43.478 0.00 0.00 0.00 3.61
2205 4282 4.006319 TCAGTTCATCACACACACAACAA 58.994 39.130 0.00 0.00 0.00 2.83
2223 4300 3.678252 GCAGCTGACTACACATCATCAGT 60.678 47.826 20.43 0.00 40.61 3.41
2224 4301 2.864946 GCAGCTGACTACACATCATCAG 59.135 50.000 20.43 0.00 41.29 2.90
2225 4302 2.498885 AGCAGCTGACTACACATCATCA 59.501 45.455 20.43 0.00 0.00 3.07
2227 4304 3.055602 TGAAGCAGCTGACTACACATCAT 60.056 43.478 20.43 0.00 0.00 2.45
2229 4306 2.964740 TGAAGCAGCTGACTACACATC 58.035 47.619 20.43 8.59 0.00 3.06
2230 4307 3.407424 TTGAAGCAGCTGACTACACAT 57.593 42.857 20.43 0.00 0.00 3.21
2231 4308 2.872245 GTTTGAAGCAGCTGACTACACA 59.128 45.455 20.43 11.91 0.00 3.72
2232 4309 2.096713 CGTTTGAAGCAGCTGACTACAC 60.097 50.000 20.43 5.13 0.00 2.90
2233 4310 2.135139 CGTTTGAAGCAGCTGACTACA 58.865 47.619 20.43 8.52 0.00 2.74
2234 4311 1.461127 CCGTTTGAAGCAGCTGACTAC 59.539 52.381 20.43 8.11 0.00 2.73
2235 4312 1.070134 ACCGTTTGAAGCAGCTGACTA 59.930 47.619 20.43 1.92 0.00 2.59
2236 4313 0.179045 ACCGTTTGAAGCAGCTGACT 60.179 50.000 20.43 11.55 0.00 3.41
2237 4314 0.663153 AACCGTTTGAAGCAGCTGAC 59.337 50.000 20.43 9.11 0.00 3.51
2238 4315 0.662619 CAACCGTTTGAAGCAGCTGA 59.337 50.000 20.43 0.00 34.24 4.26
2239 4316 0.936297 GCAACCGTTTGAAGCAGCTG 60.936 55.000 10.11 10.11 34.24 4.24
2240 4317 1.360192 GCAACCGTTTGAAGCAGCT 59.640 52.632 0.00 0.00 34.24 4.24
2241 4318 0.936297 CTGCAACCGTTTGAAGCAGC 60.936 55.000 8.01 0.00 44.98 5.25
2278 4355 9.717942 GCAGGTTCATCTGATCTTACTATTATT 57.282 33.333 0.00 0.00 36.93 1.40
2285 4371 7.849804 TTTAAGCAGGTTCATCTGATCTTAC 57.150 36.000 0.00 0.00 36.93 2.34
2294 4380 4.098349 TGCATCCATTTAAGCAGGTTCATC 59.902 41.667 0.00 0.00 32.48 2.92
2300 4386 4.098960 AGAACATGCATCCATTTAAGCAGG 59.901 41.667 0.00 0.00 43.59 4.85
2307 4393 7.446013 ACAAAATCAAAGAACATGCATCCATTT 59.554 29.630 0.00 0.00 0.00 2.32
2309 4395 6.370442 CACAAAATCAAAGAACATGCATCCAT 59.630 34.615 0.00 0.00 0.00 3.41
2322 4410 7.862372 ACTTACATGTACTGCACAAAATCAAAG 59.138 33.333 4.68 0.00 41.55 2.77
2323 4411 7.711846 ACTTACATGTACTGCACAAAATCAAA 58.288 30.769 4.68 0.00 41.55 2.69
2325 4413 6.875948 ACTTACATGTACTGCACAAAATCA 57.124 33.333 4.68 0.00 41.55 2.57
2337 4425 9.155975 AGTTCTGATCATCAAACTTACATGTAC 57.844 33.333 4.68 0.00 29.78 2.90
2375 4464 6.292923 TGATTTAAAGAACGGGTTTCTCTCA 58.707 36.000 0.00 0.00 44.41 3.27
2405 4494 0.179094 ACCACGCGTGTTTCTCAGAA 60.179 50.000 34.81 0.00 0.00 3.02
2407 4496 1.191647 GTAACCACGCGTGTTTCTCAG 59.808 52.381 34.81 21.05 0.00 3.35
2408 4497 1.210870 GTAACCACGCGTGTTTCTCA 58.789 50.000 34.81 12.32 0.00 3.27
2409 4498 0.509929 GGTAACCACGCGTGTTTCTC 59.490 55.000 34.81 22.81 0.00 2.87
2410 4499 1.216941 CGGTAACCACGCGTGTTTCT 61.217 55.000 34.81 19.18 0.00 2.52
2411 4500 1.202320 CGGTAACCACGCGTGTTTC 59.798 57.895 34.81 24.20 0.00 2.78
2412 4501 3.321967 CGGTAACCACGCGTGTTT 58.678 55.556 34.81 30.08 0.00 2.83
2419 4508 2.531927 TAGTCGCTGCGGTAACCACG 62.532 60.000 23.03 0.00 0.00 4.94
2420 4509 0.179119 ATAGTCGCTGCGGTAACCAC 60.179 55.000 23.03 11.61 0.00 4.16
2421 4510 0.533491 AATAGTCGCTGCGGTAACCA 59.467 50.000 23.03 2.34 0.00 3.67
2422 4511 1.326548 CAAATAGTCGCTGCGGTAACC 59.673 52.381 23.03 5.43 0.00 2.85
2423 4512 1.267383 GCAAATAGTCGCTGCGGTAAC 60.267 52.381 23.03 13.15 0.00 2.50
2424 4513 1.003851 GCAAATAGTCGCTGCGGTAA 58.996 50.000 23.03 7.88 0.00 2.85
2425 4514 2.673074 GCAAATAGTCGCTGCGGTA 58.327 52.632 23.03 14.25 0.00 4.02
2426 4515 3.486263 GCAAATAGTCGCTGCGGT 58.514 55.556 23.03 12.41 0.00 5.68
2429 4518 1.013323 CGTCGCAAATAGTCGCTGC 60.013 57.895 0.00 0.00 0.00 5.25
2430 4519 1.013323 GCGTCGCAAATAGTCGCTG 60.013 57.895 13.44 0.00 42.88 5.18
2431 4520 2.505498 CGCGTCGCAAATAGTCGCT 61.505 57.895 18.75 0.00 43.78 4.93
2432 4521 2.055095 CGCGTCGCAAATAGTCGC 60.055 61.111 18.75 0.00 42.78 5.19
2433 4522 0.860203 TCTCGCGTCGCAAATAGTCG 60.860 55.000 18.75 0.00 0.00 4.18
2434 4523 0.840729 CTCTCGCGTCGCAAATAGTC 59.159 55.000 18.75 0.00 0.00 2.59
2435 4524 0.525668 CCTCTCGCGTCGCAAATAGT 60.526 55.000 18.75 0.00 0.00 2.12
2436 4525 1.209275 CCCTCTCGCGTCGCAAATAG 61.209 60.000 18.75 8.62 0.00 1.73
2437 4526 1.226859 CCCTCTCGCGTCGCAAATA 60.227 57.895 18.75 0.00 0.00 1.40
2438 4527 2.509336 CCCTCTCGCGTCGCAAAT 60.509 61.111 18.75 0.00 0.00 2.32
2439 4528 4.735132 CCCCTCTCGCGTCGCAAA 62.735 66.667 18.75 3.42 0.00 3.68
2443 4532 2.488087 AAAGTTCCCCTCTCGCGTCG 62.488 60.000 5.77 0.00 0.00 5.12
2444 4533 0.320508 AAAAGTTCCCCTCTCGCGTC 60.321 55.000 5.77 0.00 0.00 5.19
2445 4534 0.320508 GAAAAGTTCCCCTCTCGCGT 60.321 55.000 5.77 0.00 0.00 6.01
2446 4535 0.037232 AGAAAAGTTCCCCTCTCGCG 60.037 55.000 0.00 0.00 0.00 5.87
2447 4536 1.002087 TGAGAAAAGTTCCCCTCTCGC 59.998 52.381 0.00 0.00 37.69 5.03
2448 4537 3.330267 CTTGAGAAAAGTTCCCCTCTCG 58.670 50.000 0.00 0.00 37.69 4.04
2449 4538 3.680490 CCTTGAGAAAAGTTCCCCTCTC 58.320 50.000 0.00 0.00 35.82 3.20
2450 4539 2.224892 GCCTTGAGAAAAGTTCCCCTCT 60.225 50.000 0.00 0.00 0.00 3.69
2451 4540 2.163509 GCCTTGAGAAAAGTTCCCCTC 58.836 52.381 0.00 0.00 0.00 4.30
2452 4541 1.499007 TGCCTTGAGAAAAGTTCCCCT 59.501 47.619 0.00 0.00 0.00 4.79
2453 4542 1.889170 CTGCCTTGAGAAAAGTTCCCC 59.111 52.381 0.00 0.00 0.00 4.81
2454 4543 1.889170 CCTGCCTTGAGAAAAGTTCCC 59.111 52.381 0.00 0.00 0.00 3.97
2455 4544 1.889170 CCCTGCCTTGAGAAAAGTTCC 59.111 52.381 0.00 0.00 0.00 3.62
2456 4545 1.889170 CCCCTGCCTTGAGAAAAGTTC 59.111 52.381 0.00 0.00 0.00 3.01
2457 4546 1.499007 TCCCCTGCCTTGAGAAAAGTT 59.501 47.619 0.00 0.00 0.00 2.66
2458 4547 1.149101 TCCCCTGCCTTGAGAAAAGT 58.851 50.000 0.00 0.00 0.00 2.66
2459 4548 1.889170 GTTCCCCTGCCTTGAGAAAAG 59.111 52.381 0.00 0.00 0.00 2.27
2460 4549 1.499007 AGTTCCCCTGCCTTGAGAAAA 59.501 47.619 0.00 0.00 0.00 2.29
2461 4550 1.149101 AGTTCCCCTGCCTTGAGAAA 58.851 50.000 0.00 0.00 0.00 2.52
2462 4551 1.149101 AAGTTCCCCTGCCTTGAGAA 58.851 50.000 0.00 0.00 0.00 2.87
2463 4552 1.149101 AAAGTTCCCCTGCCTTGAGA 58.851 50.000 0.00 0.00 0.00 3.27
2464 4553 1.889170 GAAAAGTTCCCCTGCCTTGAG 59.111 52.381 0.00 0.00 0.00 3.02
2465 4554 1.499007 AGAAAAGTTCCCCTGCCTTGA 59.501 47.619 0.00 0.00 0.00 3.02
2466 4555 1.889170 GAGAAAAGTTCCCCTGCCTTG 59.111 52.381 0.00 0.00 0.00 3.61
2467 4556 1.499007 TGAGAAAAGTTCCCCTGCCTT 59.501 47.619 0.00 0.00 0.00 4.35
2468 4557 1.149101 TGAGAAAAGTTCCCCTGCCT 58.851 50.000 0.00 0.00 0.00 4.75
2469 4558 1.889170 CTTGAGAAAAGTTCCCCTGCC 59.111 52.381 0.00 0.00 0.00 4.85
2470 4559 1.889170 CCTTGAGAAAAGTTCCCCTGC 59.111 52.381 0.00 0.00 0.00 4.85
2471 4560 1.889170 GCCTTGAGAAAAGTTCCCCTG 59.111 52.381 0.00 0.00 0.00 4.45
2472 4561 1.499007 TGCCTTGAGAAAAGTTCCCCT 59.501 47.619 0.00 0.00 0.00 4.79
2473 4562 1.889170 CTGCCTTGAGAAAAGTTCCCC 59.111 52.381 0.00 0.00 0.00 4.81
2474 4563 2.587522 ACTGCCTTGAGAAAAGTTCCC 58.412 47.619 0.00 0.00 0.00 3.97
2475 4564 3.304057 CGAACTGCCTTGAGAAAAGTTCC 60.304 47.826 7.95 0.00 42.32 3.62
2476 4565 3.560068 TCGAACTGCCTTGAGAAAAGTTC 59.440 43.478 0.00 0.00 42.03 3.01
2477 4566 3.541632 TCGAACTGCCTTGAGAAAAGTT 58.458 40.909 0.00 0.00 33.91 2.66
2478 4567 3.194005 TCGAACTGCCTTGAGAAAAGT 57.806 42.857 0.00 0.00 0.00 2.66
2479 4568 3.181526 CGATCGAACTGCCTTGAGAAAAG 60.182 47.826 10.26 0.00 0.00 2.27
2480 4569 2.736721 CGATCGAACTGCCTTGAGAAAA 59.263 45.455 10.26 0.00 0.00 2.29
2481 4570 2.337583 CGATCGAACTGCCTTGAGAAA 58.662 47.619 10.26 0.00 0.00 2.52
2482 4571 1.404181 CCGATCGAACTGCCTTGAGAA 60.404 52.381 18.66 0.00 0.00 2.87
2483 4572 0.173481 CCGATCGAACTGCCTTGAGA 59.827 55.000 18.66 0.00 0.00 3.27
2484 4573 0.108615 ACCGATCGAACTGCCTTGAG 60.109 55.000 18.66 0.00 0.00 3.02
2485 4574 0.389817 CACCGATCGAACTGCCTTGA 60.390 55.000 18.66 0.00 0.00 3.02
2486 4575 1.970917 GCACCGATCGAACTGCCTTG 61.971 60.000 18.66 0.00 0.00 3.61
2487 4576 1.741770 GCACCGATCGAACTGCCTT 60.742 57.895 18.66 0.00 0.00 4.35
2488 4577 2.125512 GCACCGATCGAACTGCCT 60.126 61.111 18.66 0.00 0.00 4.75
2489 4578 2.125512 AGCACCGATCGAACTGCC 60.126 61.111 18.66 5.43 0.00 4.85
2490 4579 3.084579 CAGCACCGATCGAACTGC 58.915 61.111 18.66 18.84 0.00 4.40
2491 4580 0.179137 TAGCAGCACCGATCGAACTG 60.179 55.000 18.66 19.94 0.00 3.16
2492 4581 0.101399 CTAGCAGCACCGATCGAACT 59.899 55.000 18.66 7.71 0.00 3.01
2493 4582 1.483424 GCTAGCAGCACCGATCGAAC 61.483 60.000 18.66 5.23 41.89 3.95
2494 4583 1.226974 GCTAGCAGCACCGATCGAA 60.227 57.895 18.66 0.00 41.89 3.71
2495 4584 2.413351 GCTAGCAGCACCGATCGA 59.587 61.111 18.66 0.00 41.89 3.59
2496 4585 2.659897 GGCTAGCAGCACCGATCG 60.660 66.667 18.24 8.51 44.75 3.69
2497 4586 1.884926 GTGGCTAGCAGCACCGATC 60.885 63.158 18.24 0.00 44.75 3.69
2498 4587 2.187946 GTGGCTAGCAGCACCGAT 59.812 61.111 18.24 0.00 44.75 4.18
2499 4588 2.997315 AGTGGCTAGCAGCACCGA 60.997 61.111 18.24 0.00 44.75 4.69
2500 4589 2.510238 GAGTGGCTAGCAGCACCG 60.510 66.667 18.24 0.00 44.75 4.94
2501 4590 2.124942 GGAGTGGCTAGCAGCACC 60.125 66.667 18.24 12.25 44.75 5.01
2502 4591 2.510238 CGGAGTGGCTAGCAGCAC 60.510 66.667 18.24 15.93 44.75 4.40
2503 4592 2.997315 ACGGAGTGGCTAGCAGCA 60.997 61.111 18.24 2.93 44.75 4.41
2515 4604 2.365105 TAAGGGGCCTGGACGGAG 60.365 66.667 0.84 0.00 33.16 4.63
2516 4605 2.686106 GTAAGGGGCCTGGACGGA 60.686 66.667 0.84 0.00 33.16 4.69
2517 4606 4.157120 CGTAAGGGGCCTGGACGG 62.157 72.222 0.84 0.00 34.55 4.79
2518 4607 2.459202 AAACGTAAGGGGCCTGGACG 62.459 60.000 18.48 18.48 46.39 4.79
2519 4608 0.251033 AAAACGTAAGGGGCCTGGAC 60.251 55.000 0.84 0.00 46.39 4.02
2520 4609 0.479378 AAAAACGTAAGGGGCCTGGA 59.521 50.000 0.84 0.00 46.39 3.86
2521 4610 3.045518 AAAAACGTAAGGGGCCTGG 57.954 52.632 0.84 0.00 46.39 4.45
2541 4630 8.695456 TGAGCTAATAAAATCCATCCTTTTTCC 58.305 33.333 0.00 0.00 0.00 3.13
2589 4678 4.126437 CGGGTGTATGCTCATCATGTTTA 58.874 43.478 0.00 0.00 36.63 2.01
2604 4693 1.684983 GCTATACAGAAGGCGGGTGTA 59.315 52.381 0.00 0.00 0.00 2.90
2612 4701 4.281941 TGTGCATCCTAGCTATACAGAAGG 59.718 45.833 0.00 0.00 34.99 3.46
2614 4703 4.649218 TGTGTGCATCCTAGCTATACAGAA 59.351 41.667 0.00 0.00 34.99 3.02
2757 4858 3.256136 CGGATATGGTCCTTCCTGTAGTC 59.744 52.174 0.00 0.00 45.46 2.59
3006 5109 2.172930 TGAGTACCCAGTATCGAGCTCT 59.827 50.000 12.85 0.00 0.00 4.09
3107 5210 2.096496 CGCAAAGGAATAGTTGAGCAGG 59.904 50.000 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.