Multiple sequence alignment - TraesCS2D01G508900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G508900 chr2D 100.000 6409 0 0 1 6409 601607633 601601225 0.000000e+00 11836.0
1 TraesCS2D01G508900 chr2D 89.094 1357 134 5 4196 5539 601964258 601962903 0.000000e+00 1674.0
2 TraesCS2D01G508900 chr2D 86.101 1590 172 27 4196 5764 601709501 601707940 0.000000e+00 1666.0
3 TraesCS2D01G508900 chr2D 90.119 1265 125 0 4196 5460 602773851 602775115 0.000000e+00 1644.0
4 TraesCS2D01G508900 chr2D 95.172 290 10 1 1607 1892 632564134 632563845 7.570000e-124 455.0
5 TraesCS2D01G508900 chr2B 93.967 3862 159 21 2570 6409 731898698 731894889 0.000000e+00 5773.0
6 TraesCS2D01G508900 chr2B 87.466 1468 163 13 4199 5665 732013644 732012197 0.000000e+00 1672.0
7 TraesCS2D01G508900 chr2B 87.134 1469 167 14 4199 5665 732018411 732016963 0.000000e+00 1646.0
8 TraesCS2D01G508900 chr2B 88.333 480 36 6 312 778 731899954 731899482 5.610000e-155 558.0
9 TraesCS2D01G508900 chr2B 89.431 369 35 4 911 1276 731899054 731898687 4.530000e-126 462.0
10 TraesCS2D01G508900 chr2B 88.652 141 12 4 771 908 731899238 731899099 1.110000e-37 169.0
11 TraesCS2D01G508900 chr2A 93.810 2084 125 4 4199 6282 734893907 734891828 0.000000e+00 3131.0
12 TraesCS2D01G508900 chr2A 90.435 1265 121 0 4196 5460 735397084 735398348 0.000000e+00 1666.0
13 TraesCS2D01G508900 chr2A 88.810 1269 139 3 4193 5460 735560596 735561862 0.000000e+00 1554.0
14 TraesCS2D01G508900 chr2A 85.345 232 26 6 2348 2572 38783718 38783948 3.860000e-57 233.0
15 TraesCS2D01G508900 chr2A 98.718 78 1 0 6332 6409 734891826 734891749 8.660000e-29 139.0
16 TraesCS2D01G508900 chr7D 97.846 1300 26 2 1274 2572 49951252 49949954 0.000000e+00 2244.0
17 TraesCS2D01G508900 chr7D 81.765 340 52 8 5671 6005 596241337 596241003 6.330000e-70 276.0
18 TraesCS2D01G508900 chr3D 96.908 1035 19 3 1276 2297 42990002 42988968 0.000000e+00 1722.0
19 TraesCS2D01G508900 chr3D 96.552 609 19 1 1604 2210 2358209 2357601 0.000000e+00 1007.0
20 TraesCS2D01G508900 chr3D 84.043 846 70 41 1775 2572 82702989 82702161 0.000000e+00 754.0
21 TraesCS2D01G508900 chr3D 93.048 374 23 2 2202 2573 2360653 2361025 1.570000e-150 544.0
22 TraesCS2D01G508900 chr3D 97.902 286 6 0 2289 2574 42987875 42987590 4.460000e-136 496.0
23 TraesCS2D01G508900 chr3D 92.776 263 19 0 1604 1866 315478391 315478653 1.300000e-101 381.0
24 TraesCS2D01G508900 chr3A 91.474 997 56 16 1604 2572 588510047 588511042 0.000000e+00 1343.0
25 TraesCS2D01G508900 chr3A 94.260 331 18 1 1276 1606 588507588 588507917 7.420000e-139 505.0
26 TraesCS2D01G508900 chr1B 91.165 996 61 12 1604 2572 423108576 423107581 0.000000e+00 1327.0
27 TraesCS2D01G508900 chr1B 88.559 944 73 16 1604 2521 486551754 486552688 0.000000e+00 1112.0
28 TraesCS2D01G508900 chr1B 94.895 333 13 3 1277 1606 423111039 423110708 9.530000e-143 518.0
29 TraesCS2D01G508900 chr1B 90.000 330 26 6 1275 1601 486549297 486549622 2.760000e-113 420.0
30 TraesCS2D01G508900 chr4A 91.699 783 59 3 1604 2382 201549717 201548937 0.000000e+00 1081.0
31 TraesCS2D01G508900 chr4A 91.818 330 24 3 1277 1606 201552174 201551848 2.110000e-124 457.0
32 TraesCS2D01G508900 chr5A 93.951 529 26 3 1829 2352 606473995 606473468 0.000000e+00 795.0
33 TraesCS2D01G508900 chr5A 93.478 322 19 2 1286 1606 606479880 606479560 1.620000e-130 477.0
34 TraesCS2D01G508900 chr5A 91.089 202 18 0 2371 2572 606473245 606473044 2.280000e-69 274.0
35 TraesCS2D01G508900 chr1D 84.104 843 75 39 1775 2572 276774003 276774831 0.000000e+00 760.0
36 TraesCS2D01G508900 chr1D 82.593 540 56 23 2048 2569 363404328 363404847 5.900000e-120 442.0
37 TraesCS2D01G508900 chrUn 89.329 328 31 4 1277 1600 326827977 326828304 5.980000e-110 409.0
38 TraesCS2D01G508900 chrUn 88.922 334 33 4 1277 1606 329537189 329536856 5.980000e-110 409.0
39 TraesCS2D01G508900 chr7B 89.329 328 31 4 1277 1600 566745292 566745619 5.980000e-110 409.0
40 TraesCS2D01G508900 chr7B 85.441 261 34 4 5734 5992 674310278 674310020 1.060000e-67 268.0
41 TraesCS2D01G508900 chr7A 86.364 198 21 6 102 298 91462319 91462127 1.810000e-50 211.0
42 TraesCS2D01G508900 chr7A 86.294 197 23 4 102 298 91476509 91476317 1.810000e-50 211.0
43 TraesCS2D01G508900 chr7A 85.787 197 25 3 102 298 91461455 91461262 8.420000e-49 206.0
44 TraesCS2D01G508900 chr7A 86.096 187 25 1 112 298 91475657 91475472 3.920000e-47 200.0
45 TraesCS2D01G508900 chr7A 86.842 76 6 4 220 294 7434799 7434871 1.480000e-11 82.4
46 TraesCS2D01G508900 chr6D 84.103 195 26 5 107 298 422303717 422303525 3.950000e-42 183.0
47 TraesCS2D01G508900 chr6D 88.172 93 8 3 208 298 422303204 422303113 2.440000e-19 108.0
48 TraesCS2D01G508900 chr1A 83.590 195 26 6 107 298 51687877 51688068 1.840000e-40 178.0
49 TraesCS2D01G508900 chr4B 94.545 55 2 1 245 299 527489042 527488989 4.120000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G508900 chr2D 601601225 601607633 6408 True 11836.0 11836 100.00000 1 6409 1 chr2D.!!$R1 6408
1 TraesCS2D01G508900 chr2D 601962903 601964258 1355 True 1674.0 1674 89.09400 4196 5539 1 chr2D.!!$R3 1343
2 TraesCS2D01G508900 chr2D 601707940 601709501 1561 True 1666.0 1666 86.10100 4196 5764 1 chr2D.!!$R2 1568
3 TraesCS2D01G508900 chr2D 602773851 602775115 1264 False 1644.0 1644 90.11900 4196 5460 1 chr2D.!!$F1 1264
4 TraesCS2D01G508900 chr2B 731894889 731899954 5065 True 1740.5 5773 90.09575 312 6409 4 chr2B.!!$R1 6097
5 TraesCS2D01G508900 chr2B 732012197 732018411 6214 True 1659.0 1672 87.30000 4199 5665 2 chr2B.!!$R2 1466
6 TraesCS2D01G508900 chr2A 735397084 735398348 1264 False 1666.0 1666 90.43500 4196 5460 1 chr2A.!!$F2 1264
7 TraesCS2D01G508900 chr2A 734891749 734893907 2158 True 1635.0 3131 96.26400 4199 6409 2 chr2A.!!$R1 2210
8 TraesCS2D01G508900 chr2A 735560596 735561862 1266 False 1554.0 1554 88.81000 4193 5460 1 chr2A.!!$F3 1267
9 TraesCS2D01G508900 chr7D 49949954 49951252 1298 True 2244.0 2244 97.84600 1274 2572 1 chr7D.!!$R1 1298
10 TraesCS2D01G508900 chr3D 42987590 42990002 2412 True 1109.0 1722 97.40500 1276 2574 2 chr3D.!!$R3 1298
11 TraesCS2D01G508900 chr3D 2357601 2358209 608 True 1007.0 1007 96.55200 1604 2210 1 chr3D.!!$R1 606
12 TraesCS2D01G508900 chr3D 82702161 82702989 828 True 754.0 754 84.04300 1775 2572 1 chr3D.!!$R2 797
13 TraesCS2D01G508900 chr3A 588507588 588511042 3454 False 924.0 1343 92.86700 1276 2572 2 chr3A.!!$F1 1296
14 TraesCS2D01G508900 chr1B 423107581 423111039 3458 True 922.5 1327 93.03000 1277 2572 2 chr1B.!!$R1 1295
15 TraesCS2D01G508900 chr1B 486549297 486552688 3391 False 766.0 1112 89.27950 1275 2521 2 chr1B.!!$F1 1246
16 TraesCS2D01G508900 chr4A 201548937 201552174 3237 True 769.0 1081 91.75850 1277 2382 2 chr4A.!!$R1 1105
17 TraesCS2D01G508900 chr5A 606473044 606473995 951 True 534.5 795 92.52000 1829 2572 2 chr5A.!!$R2 743
18 TraesCS2D01G508900 chr1D 276774003 276774831 828 False 760.0 760 84.10400 1775 2572 1 chr1D.!!$F1 797
19 TraesCS2D01G508900 chr1D 363404328 363404847 519 False 442.0 442 82.59300 2048 2569 1 chr1D.!!$F2 521
20 TraesCS2D01G508900 chr7A 91461262 91462319 1057 True 208.5 211 86.07550 102 298 2 chr7A.!!$R1 196
21 TraesCS2D01G508900 chr7A 91475472 91476509 1037 True 205.5 211 86.19500 102 298 2 chr7A.!!$R2 196

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
912 1179 0.034863 TCTTTAACATCCACCGGCCC 60.035 55.0 0.0 0.0 0.0 5.80 F
913 1180 0.322997 CTTTAACATCCACCGGCCCA 60.323 55.0 0.0 0.0 0.0 5.36 F
914 1181 0.322997 TTTAACATCCACCGGCCCAG 60.323 55.0 0.0 0.0 0.0 4.45 F
1009 1320 0.469705 TGTTTGCAAGATGGGGCTGT 60.470 50.0 0.0 0.0 0.0 4.40 F
1244 1555 0.540365 CTGTTGGTGGGTGATGGCTT 60.540 55.0 0.0 0.0 0.0 4.35 F
3087 7111 0.106719 CGGGCAATTGTACTGGGGAT 60.107 55.0 7.4 0.0 0.0 3.85 F
3843 7872 0.327924 TCATTCAACCAGCCCGACAT 59.672 50.0 0.0 0.0 0.0 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2583 6607 0.745845 ATCTTGCTGTGGATCCGCAC 60.746 55.000 24.20 19.53 36.10 5.34 R
2695 6719 1.010462 GCAACGAACCGGTTGTGAC 60.010 57.895 27.87 9.34 46.93 3.67 R
2720 6744 1.064166 AGGCTGGCTAAGACATTGCAT 60.064 47.619 0.13 0.00 35.71 3.96 R
2915 6939 0.180406 ACACCGCTCCATATCCCAAC 59.820 55.000 0.00 0.00 0.00 3.77 R
3185 7209 0.250945 TGCACCGTGCCTTTTGGATA 60.251 50.000 20.67 0.00 44.23 2.59 R
3974 8003 1.350193 CGAACAGAACCCATGAGACG 58.650 55.000 0.00 0.00 0.00 4.18 R
5507 14331 2.027192 ACCCATTAGCATAGGGCATACG 60.027 50.000 0.00 0.00 46.88 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 3.622459 AACGAAGTGTTTGTGCAGC 57.378 47.368 0.00 0.00 45.00 5.25
62 63 0.808125 AACGAAGTGTTTGTGCAGCA 59.192 45.000 0.00 0.00 45.00 4.41
63 64 0.378257 ACGAAGTGTTTGTGCAGCAG 59.622 50.000 0.00 0.00 42.51 4.24
64 65 0.931662 CGAAGTGTTTGTGCAGCAGC 60.932 55.000 0.00 0.00 42.57 5.25
74 75 3.677527 GCAGCAGCAGGTTGATGT 58.322 55.556 0.00 0.00 41.58 3.06
75 76 1.962144 GCAGCAGCAGGTTGATGTT 59.038 52.632 0.00 0.00 41.58 2.71
76 77 0.109412 GCAGCAGCAGGTTGATGTTC 60.109 55.000 0.00 0.00 41.58 3.18
77 78 1.531423 CAGCAGCAGGTTGATGTTCT 58.469 50.000 0.00 0.00 35.94 3.01
78 79 1.199327 CAGCAGCAGGTTGATGTTCTG 59.801 52.381 0.00 0.00 35.94 3.02
79 80 0.524862 GCAGCAGGTTGATGTTCTGG 59.475 55.000 0.00 0.00 35.94 3.86
80 81 1.901591 CAGCAGGTTGATGTTCTGGT 58.098 50.000 0.00 0.00 39.45 4.00
81 82 1.538512 CAGCAGGTTGATGTTCTGGTG 59.461 52.381 7.24 7.24 45.96 4.17
82 83 0.883833 GCAGGTTGATGTTCTGGTGG 59.116 55.000 0.00 0.00 0.00 4.61
83 84 1.819305 GCAGGTTGATGTTCTGGTGGT 60.819 52.381 0.00 0.00 0.00 4.16
84 85 2.586425 CAGGTTGATGTTCTGGTGGTT 58.414 47.619 0.00 0.00 0.00 3.67
85 86 3.750371 CAGGTTGATGTTCTGGTGGTTA 58.250 45.455 0.00 0.00 0.00 2.85
86 87 3.753272 CAGGTTGATGTTCTGGTGGTTAG 59.247 47.826 0.00 0.00 0.00 2.34
87 88 3.650942 AGGTTGATGTTCTGGTGGTTAGA 59.349 43.478 0.00 0.00 0.00 2.10
88 89 4.003648 GGTTGATGTTCTGGTGGTTAGAG 58.996 47.826 0.00 0.00 0.00 2.43
89 90 3.334583 TGATGTTCTGGTGGTTAGAGC 57.665 47.619 0.00 0.00 0.00 4.09
90 91 2.906389 TGATGTTCTGGTGGTTAGAGCT 59.094 45.455 0.00 0.00 0.00 4.09
91 92 2.839486 TGTTCTGGTGGTTAGAGCTG 57.161 50.000 0.00 0.00 0.00 4.24
92 93 2.047061 TGTTCTGGTGGTTAGAGCTGT 58.953 47.619 0.00 0.00 0.00 4.40
93 94 2.224281 TGTTCTGGTGGTTAGAGCTGTG 60.224 50.000 0.00 0.00 0.00 3.66
94 95 0.321671 TCTGGTGGTTAGAGCTGTGC 59.678 55.000 0.00 0.00 0.00 4.57
95 96 1.005037 TGGTGGTTAGAGCTGTGCG 60.005 57.895 0.00 0.00 0.00 5.34
96 97 2.391389 GGTGGTTAGAGCTGTGCGC 61.391 63.158 0.00 0.00 39.57 6.09
109 110 4.600012 GCTGTGCGCTTAGAAATAGAAA 57.400 40.909 9.73 0.00 35.14 2.52
110 111 4.335272 GCTGTGCGCTTAGAAATAGAAAC 58.665 43.478 9.73 0.00 35.14 2.78
115 116 6.635239 TGTGCGCTTAGAAATAGAAACAAAAC 59.365 34.615 9.73 0.00 0.00 2.43
142 143 1.518056 AAGCACATGTCCTGCGTTGG 61.518 55.000 0.00 0.00 39.79 3.77
153 154 1.577328 CTGCGTTGGCCTAGTGGTTG 61.577 60.000 3.32 0.00 38.85 3.77
160 161 2.870372 CCTAGTGGTTGCGCTTGC 59.130 61.111 9.73 0.00 39.78 4.01
167 168 2.429739 GTTGCGCTTGCTTGCCTC 60.430 61.111 9.73 0.00 40.12 4.70
182 183 3.123620 CTCGAAGCAGCTGGGTGC 61.124 66.667 17.12 15.72 44.35 5.01
207 208 4.704833 ACGTCCAGCGGCTGCATT 62.705 61.111 24.27 5.21 46.23 3.56
208 209 2.511373 CGTCCAGCGGCTGCATTA 60.511 61.111 24.27 6.48 46.23 1.90
217 218 3.061161 CAGCGGCTGCATTATTTTTGAAC 59.939 43.478 21.93 0.00 46.23 3.18
224 225 7.567771 CGGCTGCATTATTTTTGAACGTTTTAA 60.568 33.333 0.46 0.00 0.00 1.52
226 227 9.091255 GCTGCATTATTTTTGAACGTTTTAAAG 57.909 29.630 0.46 0.00 0.00 1.85
304 305 6.084326 GGTTTGCAGAAACTGAAAATAGGA 57.916 37.500 7.96 0.00 40.59 2.94
305 306 6.691508 GGTTTGCAGAAACTGAAAATAGGAT 58.308 36.000 7.96 0.00 40.59 3.24
306 307 7.154656 GGTTTGCAGAAACTGAAAATAGGATT 58.845 34.615 7.96 0.00 40.59 3.01
307 308 7.657354 GGTTTGCAGAAACTGAAAATAGGATTT 59.343 33.333 7.96 0.00 40.59 2.17
308 309 8.490355 GTTTGCAGAAACTGAAAATAGGATTTG 58.510 33.333 7.96 0.00 40.59 2.32
310 311 5.578336 GCAGAAACTGAAAATAGGATTTGCC 59.422 40.000 2.81 0.00 32.44 4.52
319 320 1.917336 TAGGATTTGCCCGGTGACCC 61.917 60.000 0.00 0.00 37.37 4.46
372 373 2.125512 GGTCGTGTGCTAGCAGGG 60.126 66.667 20.03 10.45 0.00 4.45
467 476 1.009389 CAGGACTCGACGTTTCTGGC 61.009 60.000 0.00 0.00 0.00 4.85
473 482 2.256174 CTCGACGTTTCTGGCGAATAA 58.744 47.619 0.00 0.00 31.89 1.40
476 485 3.305094 TCGACGTTTCTGGCGAATAAATC 59.695 43.478 0.00 0.00 0.00 2.17
483 492 1.003545 CTGGCGAATAAATCACAGCCG 60.004 52.381 0.00 0.00 46.85 5.52
493 502 2.663826 ATCACAGCCGAGAGTTCTTC 57.336 50.000 0.00 0.00 0.00 2.87
504 513 4.686554 CCGAGAGTTCTTCAGTTCGATTTT 59.313 41.667 0.00 0.00 0.00 1.82
505 514 5.388890 CCGAGAGTTCTTCAGTTCGATTTTG 60.389 44.000 0.00 0.00 0.00 2.44
506 515 5.388890 CGAGAGTTCTTCAGTTCGATTTTGG 60.389 44.000 0.00 0.00 0.00 3.28
509 518 4.515567 AGTTCTTCAGTTCGATTTTGGGTC 59.484 41.667 0.00 0.00 0.00 4.46
512 521 4.515191 TCTTCAGTTCGATTTTGGGTCTTG 59.485 41.667 0.00 0.00 0.00 3.02
515 524 1.611491 GTTCGATTTTGGGTCTTGGCA 59.389 47.619 0.00 0.00 0.00 4.92
563 573 2.435059 GTCAGCTCCGGCCAAGAC 60.435 66.667 2.24 0.00 39.73 3.01
575 585 1.882623 GGCCAAGACTCTTGGTTCAAG 59.117 52.381 30.40 11.45 42.25 3.02
621 631 1.398390 CCGAGCAGCATTGAGGTAAAC 59.602 52.381 0.00 0.00 0.00 2.01
626 636 4.401925 AGCAGCATTGAGGTAAACTTTCT 58.598 39.130 0.00 0.00 0.00 2.52
632 642 7.592903 CAGCATTGAGGTAAACTTTCTTTTCTC 59.407 37.037 0.00 0.00 0.00 2.87
665 675 4.734854 CGAAATTGCCATTATCTGGTTTCG 59.265 41.667 11.36 11.36 46.00 3.46
668 678 9.680906 CGAAATTGCCATTATCTGGTTTCGTGA 62.681 40.741 14.85 0.00 46.04 4.35
680 690 4.717629 TCGTGAAGACCTGCGGCG 62.718 66.667 0.51 0.51 0.00 6.46
681 691 4.717629 CGTGAAGACCTGCGGCGA 62.718 66.667 12.98 0.00 0.00 5.54
734 745 2.310233 CCAACGCACTCTGTCCACG 61.310 63.158 0.00 0.00 0.00 4.94
756 767 4.067913 CCGTTGGTGGGCAATGGC 62.068 66.667 0.00 0.00 40.13 4.40
767 778 3.403936 GCAATGGCCGTATCTCCTT 57.596 52.632 0.00 0.00 0.00 3.36
768 779 0.947244 GCAATGGCCGTATCTCCTTG 59.053 55.000 0.00 0.00 0.00 3.61
769 780 0.947244 CAATGGCCGTATCTCCTTGC 59.053 55.000 0.00 0.00 0.00 4.01
803 1068 2.080693 GTGCGACCAATGACCAACATA 58.919 47.619 0.00 0.00 38.38 2.29
826 1092 2.187946 CGATGCCTCCAGTCCACC 59.812 66.667 0.00 0.00 0.00 4.61
834 1100 0.987294 CTCCAGTCCACCAAGGTCAT 59.013 55.000 0.00 0.00 39.02 3.06
836 1102 1.073763 TCCAGTCCACCAAGGTCATTG 59.926 52.381 0.00 0.00 39.02 2.82
849 1115 3.614092 AGGTCATTGTTGGCATAGACAG 58.386 45.455 0.00 0.00 33.31 3.51
858 1124 1.003118 TGGCATAGACAGGTTGGACAC 59.997 52.381 0.00 0.00 0.00 3.67
908 1175 5.064707 CCACATAACTCTTTAACATCCACCG 59.935 44.000 0.00 0.00 0.00 4.94
909 1176 5.064707 CACATAACTCTTTAACATCCACCGG 59.935 44.000 0.00 0.00 0.00 5.28
911 1178 1.339727 ACTCTTTAACATCCACCGGCC 60.340 52.381 0.00 0.00 0.00 6.13
912 1179 0.034863 TCTTTAACATCCACCGGCCC 60.035 55.000 0.00 0.00 0.00 5.80
913 1180 0.322997 CTTTAACATCCACCGGCCCA 60.323 55.000 0.00 0.00 0.00 5.36
914 1181 0.322997 TTTAACATCCACCGGCCCAG 60.323 55.000 0.00 0.00 0.00 4.45
921 1188 4.641645 CACCGGCCCAGCTGTTCA 62.642 66.667 13.81 0.00 32.22 3.18
922 1189 4.643387 ACCGGCCCAGCTGTTCAC 62.643 66.667 13.81 0.00 32.22 3.18
923 1190 4.641645 CCGGCCCAGCTGTTCACA 62.642 66.667 13.81 0.00 32.22 3.58
924 1191 2.594303 CGGCCCAGCTGTTCACAA 60.594 61.111 13.81 0.00 0.00 3.33
927 1236 1.588082 GCCCAGCTGTTCACAATGG 59.412 57.895 13.81 4.95 34.35 3.16
934 1243 3.630769 CAGCTGTTCACAATGGCATAGAT 59.369 43.478 5.25 0.00 0.00 1.98
936 1245 4.708421 AGCTGTTCACAATGGCATAGATTT 59.292 37.500 0.00 0.00 0.00 2.17
938 1247 5.517770 GCTGTTCACAATGGCATAGATTTTC 59.482 40.000 0.00 0.00 0.00 2.29
948 1257 5.678583 TGGCATAGATTTTCCAGAGAAGAG 58.321 41.667 0.00 0.00 32.35 2.85
965 1274 1.832411 GAGTGCGCGCTAAATAGGCC 61.832 60.000 33.29 4.71 0.00 5.19
970 1279 1.228657 CGCGCTAAATAGGCCCCTTC 61.229 60.000 5.56 0.00 0.00 3.46
990 1301 2.373169 TCTCCTTGCACCAAAGAGACAT 59.627 45.455 2.93 0.00 36.42 3.06
995 1306 3.713858 TGCACCAAAGAGACATGTTTG 57.286 42.857 0.00 0.00 38.94 2.93
998 1309 3.737663 GCACCAAAGAGACATGTTTGCAA 60.738 43.478 0.00 0.00 38.13 4.08
1004 1315 3.087031 AGAGACATGTTTGCAAGATGGG 58.913 45.455 19.28 5.81 36.54 4.00
1009 1320 0.469705 TGTTTGCAAGATGGGGCTGT 60.470 50.000 0.00 0.00 0.00 4.40
1011 1322 0.968405 TTTGCAAGATGGGGCTGTTC 59.032 50.000 0.00 0.00 0.00 3.18
1025 1336 2.304470 GGCTGTTCTCCTCTTCTCCTTT 59.696 50.000 0.00 0.00 0.00 3.11
1027 1338 3.618752 GCTGTTCTCCTCTTCTCCTTTCC 60.619 52.174 0.00 0.00 0.00 3.13
1028 1339 3.580458 CTGTTCTCCTCTTCTCCTTTCCA 59.420 47.826 0.00 0.00 0.00 3.53
1072 1383 1.167851 TGCAGCATTAACACTCCAGC 58.832 50.000 0.00 0.00 0.00 4.85
1073 1384 1.271543 TGCAGCATTAACACTCCAGCT 60.272 47.619 0.00 0.00 0.00 4.24
1140 1451 3.713902 GGTATGTGGCAGCATAGCT 57.286 52.632 21.33 0.00 42.94 3.32
1155 1466 1.875488 TAGCTGTCCCCTACCCTTTC 58.125 55.000 0.00 0.00 0.00 2.62
1159 1470 2.689771 TCCCCTACCCTTTCGGCC 60.690 66.667 0.00 0.00 33.26 6.13
1206 1517 1.733041 CAACCTCACGTGCGACGAT 60.733 57.895 11.67 0.00 46.05 3.73
1244 1555 0.540365 CTGTTGGTGGGTGATGGCTT 60.540 55.000 0.00 0.00 0.00 4.35
1266 1577 6.183360 GCTTGGAAGTGGTTGATATTTCTCTC 60.183 42.308 0.00 0.00 0.00 3.20
1268 1579 6.173339 TGGAAGTGGTTGATATTTCTCTCAC 58.827 40.000 0.00 0.00 0.00 3.51
1269 1580 5.292101 GGAAGTGGTTGATATTTCTCTCACG 59.708 44.000 0.00 0.00 0.00 4.35
1270 1581 4.759782 AGTGGTTGATATTTCTCTCACGG 58.240 43.478 0.00 0.00 0.00 4.94
1272 1583 5.129485 AGTGGTTGATATTTCTCTCACGGAT 59.871 40.000 0.00 0.00 0.00 4.18
1312 1782 0.879090 CGAAAAACTAGTGGGGGCAC 59.121 55.000 0.00 0.00 0.00 5.01
1552 2023 4.112634 TCCCTTTTTGTTGCTATGTCCT 57.887 40.909 0.00 0.00 0.00 3.85
2475 6497 0.751643 GCAAATACCATGGGCCGAGT 60.752 55.000 18.09 0.00 0.00 4.18
2583 6607 4.235762 CCCCTGCGGATGGTACGG 62.236 72.222 0.00 0.00 0.00 4.02
2627 6651 2.675348 GAGTATCTGGCTGAACACAAGC 59.325 50.000 0.00 0.00 0.00 4.01
2646 6670 4.701651 AGCTCTAATCAATCAGATGGCA 57.298 40.909 0.00 0.00 36.96 4.92
2695 6719 1.680522 CCCCTGAGAGTGTCCATCGG 61.681 65.000 0.00 0.00 0.00 4.18
2720 6744 1.219664 CCGGTTCGTTGCTATGGGA 59.780 57.895 0.00 0.00 0.00 4.37
2742 6766 1.407989 GCAATGTCTTAGCCAGCCTCT 60.408 52.381 0.00 0.00 0.00 3.69
2752 6776 0.897401 GCCAGCCTCTTTGCCTCTTT 60.897 55.000 0.00 0.00 0.00 2.52
2775 6799 3.128764 TGGCGACTATCTTAGTGTCTGTG 59.871 47.826 0.00 0.00 39.59 3.66
2787 6811 1.194547 GTGTCTGTGCCGTGTATTGTG 59.805 52.381 0.00 0.00 0.00 3.33
2793 6817 1.288419 TGCCGTGTATTGTGCTGACG 61.288 55.000 0.00 0.00 0.00 4.35
2799 6823 1.082117 GTATTGTGCTGACGGACCGG 61.082 60.000 20.00 0.00 0.00 5.28
2860 6884 2.758327 ACCCATCGCACGGCTAGA 60.758 61.111 0.00 0.00 0.00 2.43
2862 6886 1.069765 CCCATCGCACGGCTAGATT 59.930 57.895 0.00 0.00 0.00 2.40
2875 6899 2.633481 GGCTAGATTTCCCGTCCTATGT 59.367 50.000 0.00 0.00 0.00 2.29
2877 6901 3.574826 GCTAGATTTCCCGTCCTATGTCT 59.425 47.826 0.00 0.00 0.00 3.41
2883 6907 1.006758 TCCCGTCCTATGTCTTCCAGT 59.993 52.381 0.00 0.00 0.00 4.00
2898 6922 1.754226 TCCAGTTTGGTGCTTTGAACC 59.246 47.619 0.00 0.00 39.03 3.62
2899 6923 1.480137 CCAGTTTGGTGCTTTGAACCA 59.520 47.619 0.00 0.00 46.01 3.67
2915 6939 0.246635 ACCAGAGAACCGGTGATTCG 59.753 55.000 8.52 0.00 33.05 3.34
2919 6943 1.076332 GAGAACCGGTGATTCGTTGG 58.924 55.000 8.52 0.00 0.00 3.77
3003 7027 5.977129 CAGTTGAATTACTTTGACAACCCAC 59.023 40.000 0.00 0.00 40.77 4.61
3023 7047 5.653769 CCCACATAAGATTGTTGATTCCACT 59.346 40.000 0.00 0.00 0.00 4.00
3036 7060 1.904287 TTCCACTTTGATCCCAACGG 58.096 50.000 0.00 0.00 30.88 4.44
3063 7087 3.267812 AGAATGGTCACTTCATGTGGGAT 59.732 43.478 0.00 0.00 46.20 3.85
3072 7096 0.396435 TCATGTGGGATATGACGGGC 59.604 55.000 0.00 0.00 30.03 6.13
3087 7111 0.106719 CGGGCAATTGTACTGGGGAT 60.107 55.000 7.40 0.00 0.00 3.85
3094 7118 2.278657 TTGTACTGGGGATGGGATGA 57.721 50.000 0.00 0.00 0.00 2.92
3101 7125 1.284785 TGGGGATGGGATGACTTTGAC 59.715 52.381 0.00 0.00 0.00 3.18
3123 7147 4.975147 ACTTATATGAACACAGGGGATCCA 59.025 41.667 15.23 0.00 34.83 3.41
3164 7188 7.539436 TCATAGTCGCAGATGGTCTTTATATC 58.461 38.462 0.00 0.00 40.67 1.63
3165 7189 5.140747 AGTCGCAGATGGTCTTTATATCC 57.859 43.478 0.00 0.00 40.67 2.59
3166 7190 3.921021 GTCGCAGATGGTCTTTATATCCG 59.079 47.826 0.00 0.00 40.67 4.18
3167 7191 3.824443 TCGCAGATGGTCTTTATATCCGA 59.176 43.478 0.00 0.00 0.00 4.55
3168 7192 4.279922 TCGCAGATGGTCTTTATATCCGAA 59.720 41.667 0.00 0.00 0.00 4.30
3169 7193 4.386049 CGCAGATGGTCTTTATATCCGAAC 59.614 45.833 0.00 0.00 0.00 3.95
3170 7194 4.386049 GCAGATGGTCTTTATATCCGAACG 59.614 45.833 0.00 0.00 0.00 3.95
3171 7195 4.923871 CAGATGGTCTTTATATCCGAACGG 59.076 45.833 6.94 6.94 0.00 4.44
3172 7196 3.102052 TGGTCTTTATATCCGAACGGC 57.898 47.619 8.48 0.00 34.68 5.68
3173 7197 2.431419 TGGTCTTTATATCCGAACGGCA 59.569 45.455 8.48 0.00 34.68 5.69
3174 7198 3.057734 GGTCTTTATATCCGAACGGCAG 58.942 50.000 8.48 0.00 34.68 4.85
3175 7199 3.243636 GGTCTTTATATCCGAACGGCAGA 60.244 47.826 8.48 0.81 34.68 4.26
3176 7200 4.557205 GTCTTTATATCCGAACGGCAGAT 58.443 43.478 8.48 4.37 34.68 2.90
3177 7201 4.386049 GTCTTTATATCCGAACGGCAGATG 59.614 45.833 8.48 0.00 34.68 2.90
3178 7202 3.313012 TTATATCCGAACGGCAGATGG 57.687 47.619 8.48 0.00 34.68 3.51
3179 7203 1.048601 ATATCCGAACGGCAGATGGT 58.951 50.000 8.48 0.00 34.68 3.55
3180 7204 0.387929 TATCCGAACGGCAGATGGTC 59.612 55.000 8.48 0.00 34.68 4.02
3181 7205 1.330655 ATCCGAACGGCAGATGGTCT 61.331 55.000 8.48 0.00 34.68 3.85
3182 7206 1.079127 CCGAACGGCAGATGGTCTT 60.079 57.895 0.00 0.00 0.00 3.01
3183 7207 0.673644 CCGAACGGCAGATGGTCTTT 60.674 55.000 0.00 0.00 0.00 2.52
3184 7208 1.404986 CCGAACGGCAGATGGTCTTTA 60.405 52.381 0.00 0.00 0.00 1.85
3185 7209 2.550978 CGAACGGCAGATGGTCTTTAT 58.449 47.619 0.00 0.00 0.00 1.40
3186 7210 3.491964 CCGAACGGCAGATGGTCTTTATA 60.492 47.826 0.00 0.00 0.00 0.98
3187 7211 4.307432 CGAACGGCAGATGGTCTTTATAT 58.693 43.478 0.00 0.00 0.00 0.86
3317 7342 2.100631 GGGACCATGTTGCTCGTCG 61.101 63.158 0.00 0.00 0.00 5.12
3338 7363 8.016801 TCGTCGGGAATTTTAGTTGTTAATTTC 58.983 33.333 0.00 0.00 0.00 2.17
3339 7364 7.006742 CGTCGGGAATTTTAGTTGTTAATTTCG 59.993 37.037 0.00 0.00 0.00 3.46
3340 7365 7.804600 GTCGGGAATTTTAGTTGTTAATTTCGT 59.195 33.333 0.00 0.00 0.00 3.85
3341 7366 8.016801 TCGGGAATTTTAGTTGTTAATTTCGTC 58.983 33.333 0.00 0.00 0.00 4.20
3342 7367 8.019094 CGGGAATTTTAGTTGTTAATTTCGTCT 58.981 33.333 0.00 0.00 0.00 4.18
3343 7368 9.124807 GGGAATTTTAGTTGTTAATTTCGTCTG 57.875 33.333 0.00 0.00 0.00 3.51
3344 7369 9.887406 GGAATTTTAGTTGTTAATTTCGTCTGA 57.113 29.630 0.00 0.00 0.00 3.27
3349 7374 9.710979 TTTAGTTGTTAATTTCGTCTGACTTTG 57.289 29.630 6.21 0.00 0.00 2.77
3350 7375 7.548196 AGTTGTTAATTTCGTCTGACTTTGA 57.452 32.000 6.21 0.00 0.00 2.69
3351 7376 8.154649 AGTTGTTAATTTCGTCTGACTTTGAT 57.845 30.769 6.21 0.00 0.00 2.57
3352 7377 8.070171 AGTTGTTAATTTCGTCTGACTTTGATG 58.930 33.333 6.21 0.00 0.00 3.07
3353 7378 7.490962 TGTTAATTTCGTCTGACTTTGATGT 57.509 32.000 6.21 0.00 0.00 3.06
3354 7379 7.925993 TGTTAATTTCGTCTGACTTTGATGTT 58.074 30.769 6.21 0.00 0.00 2.71
3360 7385 7.548196 TTCGTCTGACTTTGATGTTTTAACT 57.452 32.000 6.21 0.00 0.00 2.24
3383 7408 9.630098 AACTGCACTTTGAACATATTAGATTTG 57.370 29.630 0.00 0.00 0.00 2.32
3390 7415 9.241317 CTTTGAACATATTAGATTTGTCCATGC 57.759 33.333 0.00 0.00 0.00 4.06
3392 7417 7.062322 TGAACATATTAGATTTGTCCATGCCT 58.938 34.615 0.00 0.00 0.00 4.75
3413 7438 4.977963 CCTACTTTGTGAGCAAAATGTGTG 59.022 41.667 3.06 0.00 43.17 3.82
3414 7439 4.454728 ACTTTGTGAGCAAAATGTGTGT 57.545 36.364 0.00 0.00 43.17 3.72
3421 7446 3.066064 TGAGCAAAATGTGTGTTTACGCT 59.934 39.130 0.00 0.00 38.15 5.07
3641 7666 8.667592 AGTGATAGTTAAGGTCCTTAGAAGTT 57.332 34.615 11.23 0.00 0.00 2.66
3647 7672 8.488308 AGTTAAGGTCCTTAGAAGTTTCTGTA 57.512 34.615 11.23 0.00 38.19 2.74
3648 7673 8.366401 AGTTAAGGTCCTTAGAAGTTTCTGTAC 58.634 37.037 11.23 3.08 38.19 2.90
3687 7716 1.092348 GGCGAGGTTGGTCCATTAAC 58.908 55.000 0.00 0.00 39.02 2.01
3694 7723 2.629051 GTTGGTCCATTAACCTCCTCG 58.371 52.381 0.00 0.00 40.20 4.63
3699 7728 1.123928 CCATTAACCTCCTCGCCTCT 58.876 55.000 0.00 0.00 0.00 3.69
3705 7734 0.394625 ACCTCCTCGCCTCTAGACAC 60.395 60.000 0.00 0.00 0.00 3.67
3715 7744 2.815478 CCTCTAGACACGAGCCATTTC 58.185 52.381 0.00 0.00 0.00 2.17
3721 7750 4.406648 AGACACGAGCCATTTCATATGA 57.593 40.909 0.00 0.00 0.00 2.15
3722 7751 4.769688 AGACACGAGCCATTTCATATGAA 58.230 39.130 14.23 14.23 0.00 2.57
3843 7872 0.327924 TCATTCAACCAGCCCGACAT 59.672 50.000 0.00 0.00 0.00 3.06
3844 7873 0.734889 CATTCAACCAGCCCGACATC 59.265 55.000 0.00 0.00 0.00 3.06
3974 8003 1.079612 GCATTGTTCCTTGCTGCCC 60.080 57.895 0.00 0.00 35.95 5.36
4114 8143 3.591527 TCACCATCCCCTACAGTTTTCAT 59.408 43.478 0.00 0.00 0.00 2.57
4379 8408 7.195839 ACAGCTAATCTCTTCAAACAAAGAC 57.804 36.000 0.00 0.00 32.03 3.01
4664 13460 6.814043 AGTTCCTCTACTTGTTTACGAGTTT 58.186 36.000 8.01 0.00 40.82 2.66
4712 13508 2.089980 CTCCATGGCCAAAGTGAGAAG 58.910 52.381 10.96 0.00 0.00 2.85
5196 13992 3.594134 AGACTCACAGAAGCATGCTTAC 58.406 45.455 32.02 23.35 36.26 2.34
5285 14081 7.684529 ACTTAAAGGTCAATCTCAGTTCTCAT 58.315 34.615 0.00 0.00 0.00 2.90
5296 14092 7.894753 ATCTCAGTTCTCATATCACAAGAGA 57.105 36.000 0.00 0.00 36.68 3.10
5383 14179 5.650266 TGTACAGCTTGGAAAAAGAGTTCAA 59.350 36.000 0.00 0.00 0.00 2.69
5418 14217 9.595823 CTGAAATTCCAAGATGATTTTGCTTAT 57.404 29.630 0.00 0.00 0.00 1.73
5427 14226 9.806203 CAAGATGATTTTGCTTATATGGTGAAA 57.194 29.630 0.00 0.00 0.00 2.69
5464 14288 9.120538 ACTATTATTAGTTTTGGTGCCATACTG 57.879 33.333 13.43 2.40 34.99 2.74
5468 14292 2.697751 AGTTTTGGTGCCATACTGCAAA 59.302 40.909 5.93 0.00 44.11 3.68
5469 14293 3.324556 AGTTTTGGTGCCATACTGCAAAT 59.675 39.130 5.93 0.00 44.11 2.32
5472 14296 2.523245 TGGTGCCATACTGCAAATCAA 58.477 42.857 0.00 0.00 44.11 2.57
5473 14297 2.492881 TGGTGCCATACTGCAAATCAAG 59.507 45.455 0.00 0.00 44.11 3.02
5474 14298 2.493278 GGTGCCATACTGCAAATCAAGT 59.507 45.455 0.00 0.00 44.11 3.16
5475 14299 3.504863 GTGCCATACTGCAAATCAAGTG 58.495 45.455 0.00 0.00 44.11 3.16
5476 14300 3.057315 GTGCCATACTGCAAATCAAGTGT 60.057 43.478 0.00 0.00 44.11 3.55
5477 14301 3.191162 TGCCATACTGCAAATCAAGTGTC 59.809 43.478 0.00 0.00 38.56 3.67
5478 14302 3.191162 GCCATACTGCAAATCAAGTGTCA 59.809 43.478 0.00 0.00 0.00 3.58
5504 14328 7.432148 TTGGGAACTCTGAATTGTAGCTATA 57.568 36.000 0.00 0.00 0.00 1.31
5507 14331 8.585881 TGGGAACTCTGAATTGTAGCTATATAC 58.414 37.037 0.00 0.00 0.00 1.47
5649 14486 4.082125 GAACTCATGTTGATGGGAAACCT 58.918 43.478 0.00 0.00 43.92 3.50
5909 14762 1.303309 CAGTCCGGCCTGAAATGATC 58.697 55.000 6.67 0.00 34.23 2.92
5980 14833 2.556257 TCACAAGTACAAGCTGCGAAA 58.444 42.857 0.00 0.00 0.00 3.46
6215 15077 4.314961 TGTATGATGCGTCAGTGAAAACT 58.685 39.130 15.04 0.00 37.87 2.66
6224 15086 5.295787 TGCGTCAGTGAAAACTCTACATTTT 59.704 36.000 0.00 0.00 31.96 1.82
6291 15186 6.342111 CCTGATCTAACACTTCCTTAGTTCC 58.658 44.000 0.00 0.00 33.85 3.62
6296 15191 7.133133 TCTAACACTTCCTTAGTTCCAACTT 57.867 36.000 0.00 0.00 40.37 2.66
6302 15197 5.104067 ACTTCCTTAGTTCCAACTTCCAAGT 60.104 40.000 0.00 0.00 40.37 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.503427 CAAACACTTCGTTTTCTCTCTTTATTT 57.497 29.630 0.00 0.00 45.79 1.40
30 31 8.674607 ACAAACACTTCGTTTTCTCTCTTTATT 58.325 29.630 0.00 0.00 45.79 1.40
31 32 8.122952 CACAAACACTTCGTTTTCTCTCTTTAT 58.877 33.333 0.00 0.00 45.79 1.40
32 33 7.461107 CACAAACACTTCGTTTTCTCTCTTTA 58.539 34.615 0.00 0.00 45.79 1.85
33 34 6.314784 CACAAACACTTCGTTTTCTCTCTTT 58.685 36.000 0.00 0.00 45.79 2.52
34 35 5.673818 GCACAAACACTTCGTTTTCTCTCTT 60.674 40.000 0.00 0.00 45.79 2.85
35 36 4.201822 GCACAAACACTTCGTTTTCTCTCT 60.202 41.667 0.00 0.00 45.79 3.10
36 37 4.029043 GCACAAACACTTCGTTTTCTCTC 58.971 43.478 0.00 0.00 45.79 3.20
37 38 3.438781 TGCACAAACACTTCGTTTTCTCT 59.561 39.130 0.00 0.00 45.79 3.10
38 39 3.753842 TGCACAAACACTTCGTTTTCTC 58.246 40.909 0.00 0.00 45.79 2.87
39 40 3.758300 CTGCACAAACACTTCGTTTTCT 58.242 40.909 0.00 0.00 45.79 2.52
40 41 2.278875 GCTGCACAAACACTTCGTTTTC 59.721 45.455 0.00 0.00 45.79 2.29
41 42 2.258755 GCTGCACAAACACTTCGTTTT 58.741 42.857 0.00 0.00 45.79 2.43
43 44 0.808125 TGCTGCACAAACACTTCGTT 59.192 45.000 0.00 0.00 40.50 3.85
44 45 0.378257 CTGCTGCACAAACACTTCGT 59.622 50.000 0.00 0.00 0.00 3.85
45 46 0.931662 GCTGCTGCACAAACACTTCG 60.932 55.000 11.11 0.00 39.41 3.79
46 47 0.101040 TGCTGCTGCACAAACACTTC 59.899 50.000 14.93 0.00 45.31 3.01
47 48 0.101759 CTGCTGCTGCACAAACACTT 59.898 50.000 14.93 0.00 45.31 3.16
48 49 1.731433 CCTGCTGCTGCACAAACACT 61.731 55.000 14.93 0.00 45.31 3.55
49 50 1.299620 CCTGCTGCTGCACAAACAC 60.300 57.895 14.93 0.00 45.31 3.32
50 51 1.321805 AACCTGCTGCTGCACAAACA 61.322 50.000 14.93 0.00 45.31 2.83
51 52 0.872881 CAACCTGCTGCTGCACAAAC 60.873 55.000 14.93 0.00 45.31 2.93
52 53 1.036481 TCAACCTGCTGCTGCACAAA 61.036 50.000 14.93 0.00 45.31 2.83
53 54 0.824595 ATCAACCTGCTGCTGCACAA 60.825 50.000 14.93 0.00 45.31 3.33
54 55 1.228337 ATCAACCTGCTGCTGCACA 60.228 52.632 14.93 1.35 45.31 4.57
55 56 1.211969 CATCAACCTGCTGCTGCAC 59.788 57.895 14.93 0.00 45.31 4.57
57 58 0.109412 GAACATCAACCTGCTGCTGC 60.109 55.000 8.89 8.89 40.20 5.25
58 59 1.199327 CAGAACATCAACCTGCTGCTG 59.801 52.381 0.00 0.00 0.00 4.41
59 60 1.531423 CAGAACATCAACCTGCTGCT 58.469 50.000 0.00 0.00 0.00 4.24
60 61 0.524862 CCAGAACATCAACCTGCTGC 59.475 55.000 0.00 0.00 0.00 5.25
61 62 1.538512 CACCAGAACATCAACCTGCTG 59.461 52.381 0.00 0.00 0.00 4.41
62 63 1.546323 CCACCAGAACATCAACCTGCT 60.546 52.381 0.00 0.00 0.00 4.24
63 64 0.883833 CCACCAGAACATCAACCTGC 59.116 55.000 0.00 0.00 0.00 4.85
64 65 2.276732 ACCACCAGAACATCAACCTG 57.723 50.000 0.00 0.00 0.00 4.00
65 66 3.650942 TCTAACCACCAGAACATCAACCT 59.349 43.478 0.00 0.00 0.00 3.50
66 67 4.003648 CTCTAACCACCAGAACATCAACC 58.996 47.826 0.00 0.00 0.00 3.77
67 68 3.437049 GCTCTAACCACCAGAACATCAAC 59.563 47.826 0.00 0.00 0.00 3.18
68 69 3.327757 AGCTCTAACCACCAGAACATCAA 59.672 43.478 0.00 0.00 0.00 2.57
69 70 2.906389 AGCTCTAACCACCAGAACATCA 59.094 45.455 0.00 0.00 0.00 3.07
70 71 3.265791 CAGCTCTAACCACCAGAACATC 58.734 50.000 0.00 0.00 0.00 3.06
71 72 2.639839 ACAGCTCTAACCACCAGAACAT 59.360 45.455 0.00 0.00 0.00 2.71
72 73 2.047061 ACAGCTCTAACCACCAGAACA 58.953 47.619 0.00 0.00 0.00 3.18
73 74 2.417719 CACAGCTCTAACCACCAGAAC 58.582 52.381 0.00 0.00 0.00 3.01
74 75 1.270839 GCACAGCTCTAACCACCAGAA 60.271 52.381 0.00 0.00 0.00 3.02
75 76 0.321671 GCACAGCTCTAACCACCAGA 59.678 55.000 0.00 0.00 0.00 3.86
76 77 1.016130 CGCACAGCTCTAACCACCAG 61.016 60.000 0.00 0.00 0.00 4.00
77 78 1.005037 CGCACAGCTCTAACCACCA 60.005 57.895 0.00 0.00 0.00 4.17
78 79 2.391389 GCGCACAGCTCTAACCACC 61.391 63.158 0.30 0.00 44.04 4.61
79 80 3.169198 GCGCACAGCTCTAACCAC 58.831 61.111 0.30 0.00 44.04 4.16
89 90 5.530519 TGTTTCTATTTCTAAGCGCACAG 57.469 39.130 11.47 5.98 0.00 3.66
90 91 5.933187 TTGTTTCTATTTCTAAGCGCACA 57.067 34.783 11.47 0.00 0.00 4.57
91 92 6.183359 CGTTTTGTTTCTATTTCTAAGCGCAC 60.183 38.462 11.47 0.00 0.00 5.34
92 93 5.849081 CGTTTTGTTTCTATTTCTAAGCGCA 59.151 36.000 11.47 0.00 0.00 6.09
93 94 5.219786 GCGTTTTGTTTCTATTTCTAAGCGC 60.220 40.000 0.00 0.00 38.50 5.92
94 95 6.077838 AGCGTTTTGTTTCTATTTCTAAGCG 58.922 36.000 0.00 0.00 0.00 4.68
95 96 7.853377 AAGCGTTTTGTTTCTATTTCTAAGC 57.147 32.000 0.00 0.00 0.00 3.09
99 100 9.665264 CTTTCTAAGCGTTTTGTTTCTATTTCT 57.335 29.630 0.00 0.00 0.00 2.52
100 101 8.417928 GCTTTCTAAGCGTTTTGTTTCTATTTC 58.582 33.333 0.00 0.00 45.74 2.17
101 102 8.282124 GCTTTCTAAGCGTTTTGTTTCTATTT 57.718 30.769 0.00 0.00 45.74 1.40
102 103 7.853377 GCTTTCTAAGCGTTTTGTTTCTATT 57.147 32.000 0.00 0.00 45.74 1.73
123 124 1.518056 CCAACGCAGGACATGTGCTT 61.518 55.000 18.25 0.00 43.57 3.91
126 127 2.562912 GCCAACGCAGGACATGTG 59.437 61.111 1.15 0.00 45.35 3.21
130 131 2.214216 ACTAGGCCAACGCAGGACA 61.214 57.895 5.01 0.00 40.05 4.02
136 137 2.978018 GCAACCACTAGGCCAACGC 61.978 63.158 5.01 0.00 39.06 4.84
142 143 2.870372 CAAGCGCAACCACTAGGC 59.130 61.111 11.47 0.00 39.06 3.93
153 154 3.657835 CTTCGAGGCAAGCAAGCGC 62.658 63.158 0.00 0.00 38.99 5.92
160 161 2.396955 CCAGCTGCTTCGAGGCAAG 61.397 63.158 23.23 17.04 41.94 4.01
185 186 4.421479 AGCCGCTGGACGTCGAAG 62.421 66.667 9.92 10.82 41.42 3.79
195 196 2.878580 TCAAAAATAATGCAGCCGCTG 58.121 42.857 16.47 16.47 39.64 5.18
298 299 1.409661 GGTCACCGGGCAAATCCTATT 60.410 52.381 6.32 0.00 34.39 1.73
300 301 1.605453 GGTCACCGGGCAAATCCTA 59.395 57.895 6.32 0.00 34.39 2.94
302 303 2.754254 GGGTCACCGGGCAAATCC 60.754 66.667 6.32 0.00 0.00 3.01
423 424 1.876156 GCTCACCATTGATTCCGATCC 59.124 52.381 0.00 0.00 0.00 3.36
467 476 3.448686 ACTCTCGGCTGTGATTTATTCG 58.551 45.455 0.00 0.00 0.00 3.34
473 482 2.300152 TGAAGAACTCTCGGCTGTGATT 59.700 45.455 0.00 0.00 0.00 2.57
476 485 1.000283 ACTGAAGAACTCTCGGCTGTG 60.000 52.381 0.00 0.00 0.00 3.66
483 492 5.106908 CCCAAAATCGAACTGAAGAACTCTC 60.107 44.000 0.00 0.00 0.00 3.20
493 502 2.351738 GCCAAGACCCAAAATCGAACTG 60.352 50.000 0.00 0.00 0.00 3.16
504 513 2.113774 CTGCAGTGCCAAGACCCA 59.886 61.111 13.72 0.00 0.00 4.51
505 514 2.674380 CCTGCAGTGCCAAGACCC 60.674 66.667 13.72 0.00 0.00 4.46
506 515 3.368571 GCCTGCAGTGCCAAGACC 61.369 66.667 13.72 0.00 0.00 3.85
509 518 3.429141 CTCGCCTGCAGTGCCAAG 61.429 66.667 13.72 10.55 0.00 3.61
515 524 2.358003 GAACAGCTCGCCTGCAGT 60.358 61.111 13.81 0.00 45.78 4.40
555 565 1.882623 CTTGAACCAAGAGTCTTGGCC 59.117 52.381 40.11 32.57 43.42 5.36
575 585 2.592861 GGCGCCATCCACATCCTC 60.593 66.667 24.80 0.00 0.00 3.71
579 589 4.511246 CCCAGGCGCCATCCACAT 62.511 66.667 31.54 1.71 0.00 3.21
602 612 2.350522 AGTTTACCTCAATGCTGCTCG 58.649 47.619 0.00 0.00 0.00 5.03
603 613 4.457257 AGAAAGTTTACCTCAATGCTGCTC 59.543 41.667 0.00 0.00 0.00 4.26
621 631 4.578928 TCGAAAACAGGGGAGAAAAGAAAG 59.421 41.667 0.00 0.00 0.00 2.62
626 636 5.596845 CAATTTCGAAAACAGGGGAGAAAA 58.403 37.500 15.66 0.00 32.44 2.29
632 642 1.342819 TGGCAATTTCGAAAACAGGGG 59.657 47.619 15.66 2.49 0.00 4.79
693 704 2.492090 CTGAAGCCCTCGAGGTCG 59.508 66.667 29.25 16.47 38.26 4.79
694 705 2.185608 GCTGAAGCCCTCGAGGTC 59.814 66.667 29.25 18.50 38.26 3.85
734 745 0.970427 ATTGCCCACCAACGGATTCC 60.970 55.000 0.00 0.00 35.99 3.01
756 767 2.421739 CGGGGCAAGGAGATACGG 59.578 66.667 0.00 0.00 0.00 4.02
757 768 1.472662 ATCCGGGGCAAGGAGATACG 61.473 60.000 0.00 0.00 41.66 3.06
758 769 0.035458 CATCCGGGGCAAGGAGATAC 59.965 60.000 0.00 0.00 41.66 2.24
803 1068 0.179000 GACTGGAGGCATCGGTCAAT 59.821 55.000 14.97 0.00 32.56 2.57
826 1092 3.758023 TGTCTATGCCAACAATGACCTTG 59.242 43.478 0.00 0.00 40.90 3.61
834 1100 2.107378 TCCAACCTGTCTATGCCAACAA 59.893 45.455 0.00 0.00 0.00 2.83
836 1102 2.084546 GTCCAACCTGTCTATGCCAAC 58.915 52.381 0.00 0.00 0.00 3.77
884 1151 5.064707 CGGTGGATGTTAAAGAGTTATGTGG 59.935 44.000 0.00 0.00 0.00 4.17
889 1156 3.602483 GCCGGTGGATGTTAAAGAGTTA 58.398 45.455 1.90 0.00 0.00 2.24
890 1157 2.433436 GCCGGTGGATGTTAAAGAGTT 58.567 47.619 1.90 0.00 0.00 3.01
895 1162 0.322997 CTGGGCCGGTGGATGTTAAA 60.323 55.000 3.48 0.00 0.00 1.52
908 1175 1.588082 CATTGTGAACAGCTGGGCC 59.412 57.895 19.93 6.99 0.00 5.80
909 1176 1.588082 CCATTGTGAACAGCTGGGC 59.412 57.895 19.93 9.93 31.02 5.36
911 1178 0.892755 ATGCCATTGTGAACAGCTGG 59.107 50.000 19.93 0.00 35.10 4.85
912 1179 3.011818 TCTATGCCATTGTGAACAGCTG 58.988 45.455 13.48 13.48 0.00 4.24
913 1180 3.354948 TCTATGCCATTGTGAACAGCT 57.645 42.857 0.00 0.00 0.00 4.24
914 1181 4.644103 AATCTATGCCATTGTGAACAGC 57.356 40.909 0.00 0.00 0.00 4.40
916 1183 5.479724 TGGAAAATCTATGCCATTGTGAACA 59.520 36.000 0.00 0.00 0.00 3.18
917 1184 5.964758 TGGAAAATCTATGCCATTGTGAAC 58.035 37.500 0.00 0.00 0.00 3.18
918 1185 5.951148 TCTGGAAAATCTATGCCATTGTGAA 59.049 36.000 0.00 0.00 0.00 3.18
920 1187 5.591472 TCTCTGGAAAATCTATGCCATTGTG 59.409 40.000 0.00 0.00 0.00 3.33
921 1188 5.759059 TCTCTGGAAAATCTATGCCATTGT 58.241 37.500 0.00 0.00 0.00 2.71
922 1189 6.544931 TCTTCTCTGGAAAATCTATGCCATTG 59.455 38.462 0.00 0.00 0.00 2.82
923 1190 6.666678 TCTTCTCTGGAAAATCTATGCCATT 58.333 36.000 0.00 0.00 0.00 3.16
924 1191 6.126536 ACTCTTCTCTGGAAAATCTATGCCAT 60.127 38.462 0.00 0.00 0.00 4.40
927 1236 5.007528 GCACTCTTCTCTGGAAAATCTATGC 59.992 44.000 0.00 0.00 0.00 3.14
934 1243 1.512926 GCGCACTCTTCTCTGGAAAA 58.487 50.000 0.30 0.00 0.00 2.29
936 1245 1.080501 CGCGCACTCTTCTCTGGAA 60.081 57.895 8.75 0.00 0.00 3.53
938 1247 2.271607 TAGCGCGCACTCTTCTCTGG 62.272 60.000 35.10 0.00 0.00 3.86
948 1257 2.631984 GGCCTATTTAGCGCGCAC 59.368 61.111 35.10 11.07 0.00 5.34
965 1274 1.202927 TCTTTGGTGCAAGGAGAAGGG 60.203 52.381 0.00 0.00 0.00 3.95
970 1279 2.260844 TGTCTCTTTGGTGCAAGGAG 57.739 50.000 0.00 0.00 45.07 3.69
990 1301 0.469705 ACAGCCCCATCTTGCAAACA 60.470 50.000 0.00 0.00 0.00 2.83
995 1306 1.034292 GGAGAACAGCCCCATCTTGC 61.034 60.000 0.00 0.00 0.00 4.01
998 1309 0.043940 AGAGGAGAACAGCCCCATCT 59.956 55.000 0.00 0.00 0.00 2.90
1004 1315 1.567357 AGGAGAAGAGGAGAACAGCC 58.433 55.000 0.00 0.00 0.00 4.85
1009 1320 5.646692 TTTTGGAAAGGAGAAGAGGAGAA 57.353 39.130 0.00 0.00 0.00 2.87
1011 1322 4.217334 GCTTTTTGGAAAGGAGAAGAGGAG 59.783 45.833 1.59 0.00 42.04 3.69
1025 1336 4.141846 TGGTGCATAACTTTGCTTTTTGGA 60.142 37.500 0.00 0.00 43.18 3.53
1027 1338 4.810491 ACTGGTGCATAACTTTGCTTTTTG 59.190 37.500 0.00 0.00 43.18 2.44
1028 1339 5.022282 ACTGGTGCATAACTTTGCTTTTT 57.978 34.783 0.00 0.00 43.18 1.94
1072 1383 4.818546 AGCTGCTAATGTTGCCACTATAAG 59.181 41.667 0.00 0.00 0.00 1.73
1073 1384 4.780815 AGCTGCTAATGTTGCCACTATAA 58.219 39.130 0.00 0.00 0.00 0.98
1180 1491 3.423154 CGTGAGGTTGAAGCCCGC 61.423 66.667 0.00 0.00 0.00 6.13
1191 1502 1.933041 CGTATCGTCGCACGTGAGG 60.933 63.158 22.23 10.42 43.14 3.86
1206 1517 3.583276 CTTCGGTGGCTGGTGCGTA 62.583 63.158 0.00 0.00 40.82 4.42
1228 1539 1.228831 CCAAGCCATCACCCACCAA 60.229 57.895 0.00 0.00 0.00 3.67
1244 1555 6.173339 GTGAGAGAAATATCAACCACTTCCA 58.827 40.000 0.00 0.00 0.00 3.53
1266 1577 4.838152 CGCCCCTGACCATCCGTG 62.838 72.222 0.00 0.00 0.00 4.94
1269 1580 3.866582 CTCCGCCCCTGACCATCC 61.867 72.222 0.00 0.00 0.00 3.51
1270 1581 4.554036 GCTCCGCCCCTGACCATC 62.554 72.222 0.00 0.00 0.00 3.51
1766 4386 1.629043 TCTGGACAAGCTTACTCGGT 58.371 50.000 0.00 0.00 0.00 4.69
2583 6607 0.745845 ATCTTGCTGTGGATCCGCAC 60.746 55.000 24.20 19.53 36.10 5.34
2627 6651 5.181433 CCACATGCCATCTGATTGATTAGAG 59.819 44.000 0.00 0.00 32.05 2.43
2646 6670 4.415150 CAGGCCAGCGGACCACAT 62.415 66.667 5.01 0.00 0.00 3.21
2683 6707 1.429463 GTTGTGACCGATGGACACTC 58.571 55.000 16.91 8.49 45.62 3.51
2695 6719 1.010462 GCAACGAACCGGTTGTGAC 60.010 57.895 27.87 9.34 46.93 3.67
2720 6744 1.064166 AGGCTGGCTAAGACATTGCAT 60.064 47.619 0.13 0.00 35.71 3.96
2752 6776 3.762288 ACAGACACTAAGATAGTCGCCAA 59.238 43.478 0.00 0.00 36.76 4.52
2763 6787 2.717580 TACACGGCACAGACACTAAG 57.282 50.000 0.00 0.00 0.00 2.18
2775 6799 1.419922 CGTCAGCACAATACACGGC 59.580 57.895 0.00 0.00 0.00 5.68
2842 6866 2.369257 ATCTAGCCGTGCGATGGGTG 62.369 60.000 8.72 1.66 35.46 4.61
2843 6867 1.686325 AATCTAGCCGTGCGATGGGT 61.686 55.000 0.00 4.82 38.71 4.51
2860 6884 3.112263 TGGAAGACATAGGACGGGAAAT 58.888 45.455 0.00 0.00 0.00 2.17
2862 6886 2.108168 CTGGAAGACATAGGACGGGAA 58.892 52.381 0.00 0.00 34.07 3.97
2875 6899 3.011566 TCAAAGCACCAAACTGGAAGA 57.988 42.857 0.00 0.00 40.96 2.87
2877 6901 2.167487 GGTTCAAAGCACCAAACTGGAA 59.833 45.455 0.00 0.00 40.96 3.53
2883 6907 3.011566 TCTCTGGTTCAAAGCACCAAA 57.988 42.857 0.00 0.00 43.96 3.28
2898 6922 1.726791 CAACGAATCACCGGTTCTCTG 59.273 52.381 2.97 0.00 0.00 3.35
2899 6923 1.337823 CCAACGAATCACCGGTTCTCT 60.338 52.381 2.97 0.00 0.00 3.10
2915 6939 0.180406 ACACCGCTCCATATCCCAAC 59.820 55.000 0.00 0.00 0.00 3.77
2919 6943 2.550830 ATGAACACCGCTCCATATCC 57.449 50.000 0.00 0.00 0.00 2.59
2961 6985 2.373707 GCAGCATGGGTCCCTCTCT 61.374 63.158 10.00 0.00 35.86 3.10
2964 6988 2.124403 CTGCAGCATGGGTCCCTC 60.124 66.667 10.00 0.00 35.86 4.30
2968 6992 1.180029 ATTCAACTGCAGCATGGGTC 58.820 50.000 15.27 0.00 35.86 4.46
3003 7027 9.512435 GATCAAAGTGGAATCAACAATCTTATG 57.488 33.333 0.00 0.00 0.00 1.90
3036 7060 4.579869 ACATGAAGTGACCATTCTACCAC 58.420 43.478 0.00 0.00 0.00 4.16
3063 7087 2.420827 CCCAGTACAATTGCCCGTCATA 60.421 50.000 5.05 0.00 0.00 2.15
3072 7096 3.117550 TCATCCCATCCCCAGTACAATTG 60.118 47.826 3.24 3.24 0.00 2.32
3087 7111 7.552687 GTGTTCATATAAGTCAAAGTCATCCCA 59.447 37.037 0.00 0.00 0.00 4.37
3094 7118 6.012858 TCCCCTGTGTTCATATAAGTCAAAGT 60.013 38.462 0.00 0.00 0.00 2.66
3101 7125 5.567037 TGGATCCCCTGTGTTCATATAAG 57.433 43.478 9.90 0.00 0.00 1.73
3123 7147 6.255887 GCGACTATGAAGCAGTTTACACTTAT 59.744 38.462 0.00 0.00 0.00 1.73
3164 7188 0.673644 AAAGACCATCTGCCGTTCGG 60.674 55.000 6.90 6.90 0.00 4.30
3165 7189 2.004583 TAAAGACCATCTGCCGTTCG 57.995 50.000 0.00 0.00 0.00 3.95
3166 7190 4.691216 GGATATAAAGACCATCTGCCGTTC 59.309 45.833 0.00 0.00 0.00 3.95
3167 7191 4.102524 TGGATATAAAGACCATCTGCCGTT 59.897 41.667 0.00 0.00 0.00 4.44
3168 7192 3.646162 TGGATATAAAGACCATCTGCCGT 59.354 43.478 0.00 0.00 0.00 5.68
3169 7193 4.271696 TGGATATAAAGACCATCTGCCG 57.728 45.455 0.00 0.00 0.00 5.69
3170 7194 6.015940 CCTTTTGGATATAAAGACCATCTGCC 60.016 42.308 0.00 0.00 44.07 4.85
3171 7195 6.515696 GCCTTTTGGATATAAAGACCATCTGC 60.516 42.308 0.00 0.00 44.07 4.26
3172 7196 6.547141 TGCCTTTTGGATATAAAGACCATCTG 59.453 38.462 0.00 0.00 44.07 2.90
3173 7197 6.547510 GTGCCTTTTGGATATAAAGACCATCT 59.452 38.462 0.00 0.00 44.07 2.90
3174 7198 6.513393 CGTGCCTTTTGGATATAAAGACCATC 60.513 42.308 0.00 0.00 44.07 3.51
3175 7199 5.299279 CGTGCCTTTTGGATATAAAGACCAT 59.701 40.000 0.00 0.00 44.07 3.55
3176 7200 4.638421 CGTGCCTTTTGGATATAAAGACCA 59.362 41.667 0.00 0.00 44.07 4.02
3177 7201 4.036380 CCGTGCCTTTTGGATATAAAGACC 59.964 45.833 0.00 0.00 44.07 3.85
3178 7202 4.638865 ACCGTGCCTTTTGGATATAAAGAC 59.361 41.667 0.00 0.00 44.07 3.01
3179 7203 4.638421 CACCGTGCCTTTTGGATATAAAGA 59.362 41.667 0.00 0.00 44.07 2.52
3180 7204 4.733523 GCACCGTGCCTTTTGGATATAAAG 60.734 45.833 12.80 0.00 44.07 1.85
3181 7205 3.129638 GCACCGTGCCTTTTGGATATAAA 59.870 43.478 12.80 0.00 44.07 1.40
3182 7206 2.685897 GCACCGTGCCTTTTGGATATAA 59.314 45.455 12.80 0.00 44.07 0.98
3183 7207 2.294074 GCACCGTGCCTTTTGGATATA 58.706 47.619 12.80 0.00 44.07 0.86
3184 7208 1.102978 GCACCGTGCCTTTTGGATAT 58.897 50.000 12.80 0.00 44.07 1.63
3185 7209 0.250945 TGCACCGTGCCTTTTGGATA 60.251 50.000 20.67 0.00 44.23 2.59
3186 7210 1.112315 TTGCACCGTGCCTTTTGGAT 61.112 50.000 20.67 0.00 44.23 3.41
3187 7211 1.754621 TTGCACCGTGCCTTTTGGA 60.755 52.632 20.67 0.00 44.23 3.53
3277 7302 4.142600 CCTGGCTATAACAAGTGCAAGAAC 60.143 45.833 0.00 0.00 0.00 3.01
3317 7342 9.124807 CAGACGAAATTAACAACTAAAATTCCC 57.875 33.333 0.00 0.00 0.00 3.97
3338 7363 5.621228 GCAGTTAAAACATCAAAGTCAGACG 59.379 40.000 0.00 0.00 0.00 4.18
3339 7364 6.414987 GTGCAGTTAAAACATCAAAGTCAGAC 59.585 38.462 0.00 0.00 0.00 3.51
3340 7365 6.318648 AGTGCAGTTAAAACATCAAAGTCAGA 59.681 34.615 0.00 0.00 0.00 3.27
3341 7366 6.498304 AGTGCAGTTAAAACATCAAAGTCAG 58.502 36.000 0.00 0.00 0.00 3.51
3342 7367 6.449635 AGTGCAGTTAAAACATCAAAGTCA 57.550 33.333 0.00 0.00 0.00 3.41
3343 7368 7.487829 TCAAAGTGCAGTTAAAACATCAAAGTC 59.512 33.333 7.33 0.00 0.00 3.01
3344 7369 7.319646 TCAAAGTGCAGTTAAAACATCAAAGT 58.680 30.769 7.33 0.00 0.00 2.66
3345 7370 7.754069 TCAAAGTGCAGTTAAAACATCAAAG 57.246 32.000 7.33 0.00 0.00 2.77
3346 7371 7.600375 TGTTCAAAGTGCAGTTAAAACATCAAA 59.400 29.630 21.53 7.15 0.00 2.69
3347 7372 7.093354 TGTTCAAAGTGCAGTTAAAACATCAA 58.907 30.769 21.53 7.41 0.00 2.57
3348 7373 6.625362 TGTTCAAAGTGCAGTTAAAACATCA 58.375 32.000 21.53 8.75 0.00 3.07
3349 7374 7.698836 ATGTTCAAAGTGCAGTTAAAACATC 57.301 32.000 26.29 10.41 32.28 3.06
3350 7375 9.762933 AATATGTTCAAAGTGCAGTTAAAACAT 57.237 25.926 30.28 30.28 38.96 2.71
3360 7385 8.243426 GGACAAATCTAATATGTTCAAAGTGCA 58.757 33.333 0.00 0.00 0.00 4.57
3383 7408 1.740025 GCTCACAAAGTAGGCATGGAC 59.260 52.381 0.00 0.00 0.00 4.02
3390 7415 4.977963 CACACATTTTGCTCACAAAGTAGG 59.022 41.667 0.00 0.00 46.08 3.18
3392 7417 5.574891 ACACACATTTTGCTCACAAAGTA 57.425 34.783 0.00 0.00 46.08 2.24
3413 7438 9.601971 TGAAAACACAAAGATATAAGCGTAAAC 57.398 29.630 0.00 0.00 0.00 2.01
3453 7478 7.495279 ACTCATCAATATCTGAAAAGAGAGCAC 59.505 37.037 0.00 0.00 37.67 4.40
3535 7560 1.448985 TCTTTGCAAGGCATCGGTAC 58.551 50.000 3.19 0.00 38.76 3.34
3613 7638 7.820578 TCTAAGGACCTTAACTATCACTAGC 57.179 40.000 14.90 0.00 0.00 3.42
3648 7673 6.925211 TCGCCAACTCATATCTTTATAGGAG 58.075 40.000 5.72 5.72 46.93 3.69
3687 7716 1.440938 CGTGTCTAGAGGCGAGGAGG 61.441 65.000 9.52 0.00 0.00 4.30
3699 7728 5.529581 TCATATGAAATGGCTCGTGTCTA 57.470 39.130 1.98 0.00 0.00 2.59
3715 7744 8.715998 GCTTCCATCTACACTGTATTTCATATG 58.284 37.037 0.00 0.00 0.00 1.78
3721 7750 5.804639 TGTGCTTCCATCTACACTGTATTT 58.195 37.500 0.00 0.00 34.14 1.40
3722 7751 5.420725 TGTGCTTCCATCTACACTGTATT 57.579 39.130 0.00 0.00 34.14 1.89
3724 7753 4.283467 AGTTGTGCTTCCATCTACACTGTA 59.717 41.667 0.00 0.00 34.14 2.74
3730 7759 3.003480 GTGGAGTTGTGCTTCCATCTAC 58.997 50.000 0.00 0.00 34.50 2.59
3820 7849 1.308069 CGGGCTGGTTGAATGAGTGG 61.308 60.000 0.00 0.00 0.00 4.00
3843 7872 2.303890 ACAAGTCATCAGGTGCTCATGA 59.696 45.455 5.52 5.52 38.71 3.07
3844 7873 2.708051 ACAAGTCATCAGGTGCTCATG 58.292 47.619 0.00 0.00 0.00 3.07
3882 7911 0.108377 ACACGTGCATTGCTATCGGA 60.108 50.000 17.22 0.00 0.00 4.55
3884 7913 3.859745 AATACACGTGCATTGCTATCG 57.140 42.857 17.22 13.55 0.00 2.92
3885 7914 5.050091 AGCTAAATACACGTGCATTGCTATC 60.050 40.000 19.40 5.59 0.00 2.08
3886 7915 4.816385 AGCTAAATACACGTGCATTGCTAT 59.184 37.500 19.40 6.45 0.00 2.97
3887 7916 4.033932 CAGCTAAATACACGTGCATTGCTA 59.966 41.667 20.04 8.67 0.00 3.49
3888 7917 3.009723 AGCTAAATACACGTGCATTGCT 58.990 40.909 17.22 16.82 0.00 3.91
3889 7918 3.100817 CAGCTAAATACACGTGCATTGC 58.899 45.455 17.22 14.81 0.00 3.56
3890 7919 4.334443 GTCAGCTAAATACACGTGCATTG 58.666 43.478 17.22 4.98 0.00 2.82
3892 7921 2.936498 GGTCAGCTAAATACACGTGCAT 59.064 45.455 17.22 5.18 0.00 3.96
3893 7922 2.289133 TGGTCAGCTAAATACACGTGCA 60.289 45.455 17.22 2.06 0.00 4.57
3974 8003 1.350193 CGAACAGAACCCATGAGACG 58.650 55.000 0.00 0.00 0.00 4.18
4098 8127 4.349636 TGAACTGATGAAAACTGTAGGGGA 59.650 41.667 0.00 0.00 0.00 4.81
4179 8208 8.946085 TGCACAAAATGTAATGTTTTAACCAAA 58.054 25.926 0.00 0.00 0.00 3.28
4379 8408 6.092670 TGAAAATCCTCGTTCTTTCTGCTATG 59.907 38.462 0.00 0.00 0.00 2.23
4613 13409 2.101249 CTCAAGGCAGCAACCAAAAAGA 59.899 45.455 0.00 0.00 0.00 2.52
4712 13508 6.319658 TCAATCTATCTTTCCATGACAAAGGC 59.680 38.462 13.95 0.00 32.55 4.35
5196 13992 4.037565 AGGCCTTTCTTCACCTTTTAAACG 59.962 41.667 0.00 0.00 0.00 3.60
5285 14081 5.188555 AGCATTCTGGTTCTCTCTTGTGATA 59.811 40.000 0.00 0.00 0.00 2.15
5296 14092 8.216423 ACTGATCATTTATAGCATTCTGGTTCT 58.784 33.333 0.00 0.00 0.00 3.01
5383 14179 6.893554 TCATCTTGGAATTTCAGATGATTGGT 59.106 34.615 18.50 0.00 39.97 3.67
5418 14217 8.574251 AATAGTAACTGCAACATTTCACCATA 57.426 30.769 0.00 0.00 0.00 2.74
5452 14258 2.212812 TGATTTGCAGTATGGCACCA 57.787 45.000 0.00 0.00 44.86 4.17
5464 14288 4.255833 TCCCAATTGACACTTGATTTGC 57.744 40.909 7.12 0.00 0.00 3.68
5468 14292 4.763793 CAGAGTTCCCAATTGACACTTGAT 59.236 41.667 7.12 0.00 0.00 2.57
5469 14293 4.136796 CAGAGTTCCCAATTGACACTTGA 58.863 43.478 7.12 0.00 0.00 3.02
5472 14296 4.437682 TTCAGAGTTCCCAATTGACACT 57.562 40.909 7.12 5.45 0.00 3.55
5473 14297 5.010012 ACAATTCAGAGTTCCCAATTGACAC 59.990 40.000 7.12 0.22 38.12 3.67
5474 14298 5.139727 ACAATTCAGAGTTCCCAATTGACA 58.860 37.500 7.12 0.00 38.12 3.58
5475 14299 5.712152 ACAATTCAGAGTTCCCAATTGAC 57.288 39.130 7.12 0.00 38.12 3.18
5476 14300 5.415701 GCTACAATTCAGAGTTCCCAATTGA 59.584 40.000 7.12 0.00 38.12 2.57
5477 14301 5.416952 AGCTACAATTCAGAGTTCCCAATTG 59.583 40.000 0.00 0.00 40.55 2.32
5478 14302 5.574188 AGCTACAATTCAGAGTTCCCAATT 58.426 37.500 0.00 0.00 0.00 2.32
5504 14328 6.576972 ACCCATTAGCATAGGGCATACGTAT 61.577 44.000 1.14 1.14 46.88 3.06
5507 14331 2.027192 ACCCATTAGCATAGGGCATACG 60.027 50.000 0.00 0.00 46.88 3.06
5587 14424 7.844009 ACTTCGGTGTTAAGAAATAGTGGATA 58.156 34.615 0.00 0.00 0.00 2.59
5590 14427 6.425721 TGAACTTCGGTGTTAAGAAATAGTGG 59.574 38.462 0.00 0.00 0.00 4.00
5591 14428 7.416154 TGAACTTCGGTGTTAAGAAATAGTG 57.584 36.000 0.00 0.00 0.00 2.74
5596 14433 7.148355 ACTTTTGAACTTCGGTGTTAAGAAA 57.852 32.000 0.00 0.00 0.00 2.52
5649 14486 7.701539 AGGTGCTTGAAATATGTACATTCAA 57.298 32.000 14.77 16.64 39.89 2.69
5871 14724 1.702401 TGCCTGTATTTGACCACTGGA 59.298 47.619 0.71 0.00 36.22 3.86
5874 14727 2.290323 GGACTGCCTGTATTTGACCACT 60.290 50.000 0.00 0.00 0.00 4.00
5980 14833 5.838521 TGGCAAATTTACCTTTTTCTCTCCT 59.161 36.000 8.90 0.00 0.00 3.69
6047 14900 9.679661 TTAATATCTCTAGTTCACATTTTGCCA 57.320 29.630 0.00 0.00 0.00 4.92
6048 14901 9.937175 GTTAATATCTCTAGTTCACATTTTGCC 57.063 33.333 0.00 0.00 0.00 4.52
6296 15191 3.511477 AGAGCTCAGTTTCCTACTTGGA 58.489 45.455 17.77 0.00 44.51 3.53
6302 15197 5.238583 GCTTTGTAAGAGCTCAGTTTCCTA 58.761 41.667 17.77 0.00 37.18 2.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.