Multiple sequence alignment - TraesCS2D01G508700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G508700 chr2D 100.000 3048 0 0 1 3048 601425926 601428973 0.000000e+00 5629.0
1 TraesCS2D01G508700 chr2D 97.297 74 2 0 1 74 593724718 593724645 3.190000e-25 126.0
2 TraesCS2D01G508700 chr2B 94.667 2025 70 13 681 2693 731710315 731712313 0.000000e+00 3107.0
3 TraesCS2D01G508700 chr2B 96.889 225 6 1 2825 3048 731712311 731712535 2.870000e-100 375.0
4 TraesCS2D01G508700 chr2B 83.041 342 41 9 283 623 731709565 731709890 8.260000e-76 294.0
5 TraesCS2D01G508700 chr2B 94.118 85 4 1 2741 2825 6005754 6005837 8.870000e-26 128.0
6 TraesCS2D01G508700 chr5B 82.455 1613 220 46 832 2397 46747430 46745834 0.000000e+00 1352.0
7 TraesCS2D01G508700 chr5B 81.570 1541 220 40 884 2384 47128207 47126691 0.000000e+00 1214.0
8 TraesCS2D01G508700 chr5B 82.937 1389 191 34 827 2191 46768564 46767198 0.000000e+00 1210.0
9 TraesCS2D01G508700 chr5B 81.064 1542 233 32 884 2394 46636067 46634554 0.000000e+00 1175.0
10 TraesCS2D01G508700 chr5B 76.971 482 67 24 1924 2389 46632632 46632179 5.080000e-58 235.0
11 TraesCS2D01G508700 chr5B 94.048 84 4 1 2742 2825 559086029 559086111 3.190000e-25 126.0
12 TraesCS2D01G508700 chr5B 80.000 90 4 6 499 586 229698222 229698299 2.000000e-03 54.7
13 TraesCS2D01G508700 chr5A 81.807 1605 226 43 823 2395 36826980 36825410 0.000000e+00 1286.0
14 TraesCS2D01G508700 chr5A 81.411 1517 224 30 884 2380 36799425 36797947 0.000000e+00 1186.0
15 TraesCS2D01G508700 chr5A 81.019 1433 205 45 999 2388 36942966 36941558 0.000000e+00 1077.0
16 TraesCS2D01G508700 chr5A 79.803 203 20 11 2471 2671 36947021 36946838 8.870000e-26 128.0
17 TraesCS2D01G508700 chr5D 82.855 1464 209 25 967 2397 46128605 46127151 0.000000e+00 1275.0
18 TraesCS2D01G508700 chr5D 81.741 1528 226 17 884 2392 45938688 45940181 0.000000e+00 1227.0
19 TraesCS2D01G508700 chr5D 82.011 1223 192 18 884 2092 45894567 45895775 0.000000e+00 1014.0
20 TraesCS2D01G508700 chr5D 81.345 1190 164 33 888 2050 45897740 45898898 0.000000e+00 915.0
21 TraesCS2D01G508700 chr5D 83.043 230 22 8 2469 2693 46126369 46126152 3.100000e-45 193.0
22 TraesCS2D01G508700 chr2A 89.066 814 51 19 1898 2693 734800826 734801619 0.000000e+00 976.0
23 TraesCS2D01G508700 chr2A 88.766 543 37 8 677 1209 734772762 734773290 0.000000e+00 643.0
24 TraesCS2D01G508700 chr2A 83.481 339 38 10 287 623 734770867 734771189 1.780000e-77 300.0
25 TraesCS2D01G508700 chr1D 94.161 137 8 0 1 137 121235184 121235320 3.080000e-50 209.0
26 TraesCS2D01G508700 chr1D 89.542 153 16 0 133 285 121235478 121235326 8.620000e-46 195.0
27 TraesCS2D01G508700 chr1D 93.671 79 5 0 2747 2825 318645518 318645440 5.340000e-23 119.0
28 TraesCS2D01G508700 chr1B 94.531 128 7 0 1 128 184192650 184192777 6.670000e-47 198.0
29 TraesCS2D01G508700 chr1B 92.079 101 5 1 185 285 184192890 184192793 4.100000e-29 139.0
30 TraesCS2D01G508700 chr1B 94.382 89 4 1 2737 2825 360810201 360810288 5.300000e-28 135.0
31 TraesCS2D01G508700 chr7B 95.294 85 3 1 2741 2825 473399827 473399910 1.910000e-27 134.0
32 TraesCS2D01G508700 chr3B 92.553 94 6 1 2741 2834 588061232 588061140 1.910000e-27 134.0
33 TraesCS2D01G508700 chr6B 94.253 87 4 1 2741 2827 601871945 601872030 6.860000e-27 132.0
34 TraesCS2D01G508700 chr6B 92.941 85 5 1 2741 2825 39180320 39180403 4.130000e-24 122.0
35 TraesCS2D01G508700 chr6B 81.609 87 14 2 441 526 102095220 102095135 1.520000e-08 71.3
36 TraesCS2D01G508700 chr7D 78.947 133 11 8 2693 2825 35595806 35595921 1.170000e-09 75.0
37 TraesCS2D01G508700 chr6A 84.932 73 7 4 456 526 57422822 57422892 1.520000e-08 71.3
38 TraesCS2D01G508700 chr7A 76.190 147 23 9 441 586 603952808 603952943 1.960000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G508700 chr2D 601425926 601428973 3047 False 5629.000000 5629 100.000000 1 3048 1 chr2D.!!$F1 3047
1 TraesCS2D01G508700 chr2B 731709565 731712535 2970 False 1258.666667 3107 91.532333 283 3048 3 chr2B.!!$F2 2765
2 TraesCS2D01G508700 chr5B 46745834 46747430 1596 True 1352.000000 1352 82.455000 832 2397 1 chr5B.!!$R1 1565
3 TraesCS2D01G508700 chr5B 47126691 47128207 1516 True 1214.000000 1214 81.570000 884 2384 1 chr5B.!!$R3 1500
4 TraesCS2D01G508700 chr5B 46767198 46768564 1366 True 1210.000000 1210 82.937000 827 2191 1 chr5B.!!$R2 1364
5 TraesCS2D01G508700 chr5B 46632179 46636067 3888 True 705.000000 1175 79.017500 884 2394 2 chr5B.!!$R4 1510
6 TraesCS2D01G508700 chr5A 36825410 36826980 1570 True 1286.000000 1286 81.807000 823 2395 1 chr5A.!!$R2 1572
7 TraesCS2D01G508700 chr5A 36797947 36799425 1478 True 1186.000000 1186 81.411000 884 2380 1 chr5A.!!$R1 1496
8 TraesCS2D01G508700 chr5A 36941558 36947021 5463 True 602.500000 1077 80.411000 999 2671 2 chr5A.!!$R3 1672
9 TraesCS2D01G508700 chr5D 45938688 45940181 1493 False 1227.000000 1227 81.741000 884 2392 1 chr5D.!!$F1 1508
10 TraesCS2D01G508700 chr5D 45894567 45898898 4331 False 964.500000 1014 81.678000 884 2092 2 chr5D.!!$F2 1208
11 TraesCS2D01G508700 chr5D 46126152 46128605 2453 True 734.000000 1275 82.949000 967 2693 2 chr5D.!!$R1 1726
12 TraesCS2D01G508700 chr2A 734800826 734801619 793 False 976.000000 976 89.066000 1898 2693 1 chr2A.!!$F1 795
13 TraesCS2D01G508700 chr2A 734770867 734773290 2423 False 471.500000 643 86.123500 287 1209 2 chr2A.!!$F2 922

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.178992 CTGCTCCACAAGGGGTTCAA 60.179 55.0 0.0 0.0 37.86 2.69 F
1561 4644 0.178961 AGGTGCAAGGGGAGGTTTTC 60.179 55.0 0.0 0.0 0.00 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1792 4876 0.811219 TCTTCATCCTTGCCATCGCG 60.811 55.0 0.0 0.0 38.08 5.87 R
2807 9339 0.250295 TGAGGGCTTGTTCGGTTGAG 60.250 55.0 0.0 0.0 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.820059 CACAACTAGACTGCTCCACA 57.180 50.000 0.00 0.00 0.00 4.17
20 21 3.111853 CACAACTAGACTGCTCCACAA 57.888 47.619 0.00 0.00 0.00 3.33
21 22 3.062763 CACAACTAGACTGCTCCACAAG 58.937 50.000 0.00 0.00 0.00 3.16
23 24 1.270907 ACTAGACTGCTCCACAAGGG 58.729 55.000 0.00 0.00 34.83 3.95
24 25 0.539051 CTAGACTGCTCCACAAGGGG 59.461 60.000 0.00 0.00 38.97 4.79
27 28 0.606673 GACTGCTCCACAAGGGGTTC 60.607 60.000 0.00 0.00 37.86 3.62
28 29 1.352622 ACTGCTCCACAAGGGGTTCA 61.353 55.000 0.00 0.00 37.86 3.18
29 30 0.178992 CTGCTCCACAAGGGGTTCAA 60.179 55.000 0.00 0.00 37.86 2.69
30 31 0.467290 TGCTCCACAAGGGGTTCAAC 60.467 55.000 0.00 0.00 37.86 3.18
31 32 0.467290 GCTCCACAAGGGGTTCAACA 60.467 55.000 0.00 0.00 37.86 3.33
33 34 2.162681 CTCCACAAGGGGTTCAACATC 58.837 52.381 0.00 0.00 37.22 3.06
34 35 1.496857 TCCACAAGGGGTTCAACATCA 59.503 47.619 0.00 0.00 37.22 3.07
35 36 2.091610 TCCACAAGGGGTTCAACATCAA 60.092 45.455 0.00 0.00 37.22 2.57
36 37 2.297033 CCACAAGGGGTTCAACATCAAG 59.703 50.000 0.00 0.00 0.00 3.02
39 40 3.636764 ACAAGGGGTTCAACATCAAGAAC 59.363 43.478 0.00 0.00 42.51 3.01
40 41 2.504367 AGGGGTTCAACATCAAGAACG 58.496 47.619 0.00 0.00 43.79 3.95
41 42 2.105821 AGGGGTTCAACATCAAGAACGA 59.894 45.455 0.00 0.00 43.79 3.85
42 43 2.882137 GGGGTTCAACATCAAGAACGAA 59.118 45.455 0.00 0.00 43.79 3.85
43 44 3.304458 GGGGTTCAACATCAAGAACGAAC 60.304 47.826 0.00 0.00 43.79 3.95
44 45 3.564225 GGGTTCAACATCAAGAACGAACT 59.436 43.478 0.00 0.00 43.79 3.01
47 48 6.134061 GGTTCAACATCAAGAACGAACTTAC 58.866 40.000 0.00 0.00 43.79 2.34
48 49 5.917541 TCAACATCAAGAACGAACTTACC 57.082 39.130 0.00 0.00 0.00 2.85
49 50 4.753107 TCAACATCAAGAACGAACTTACCC 59.247 41.667 0.00 0.00 0.00 3.69
50 51 4.618920 ACATCAAGAACGAACTTACCCT 57.381 40.909 0.00 0.00 0.00 4.34
51 52 4.969484 ACATCAAGAACGAACTTACCCTT 58.031 39.130 0.00 0.00 0.00 3.95
53 54 6.527423 ACATCAAGAACGAACTTACCCTTAA 58.473 36.000 0.00 0.00 0.00 1.85
54 55 7.166167 ACATCAAGAACGAACTTACCCTTAAT 58.834 34.615 0.00 0.00 0.00 1.40
55 56 7.664318 ACATCAAGAACGAACTTACCCTTAATT 59.336 33.333 0.00 0.00 0.00 1.40
56 57 7.429636 TCAAGAACGAACTTACCCTTAATTG 57.570 36.000 0.00 0.00 0.00 2.32
57 58 6.428771 TCAAGAACGAACTTACCCTTAATTGG 59.571 38.462 0.00 0.00 0.00 3.16
59 60 6.718294 AGAACGAACTTACCCTTAATTGGAT 58.282 36.000 0.00 0.00 0.00 3.41
60 61 6.822170 AGAACGAACTTACCCTTAATTGGATC 59.178 38.462 0.00 0.00 0.00 3.36
61 62 6.057321 ACGAACTTACCCTTAATTGGATCA 57.943 37.500 0.00 0.00 0.00 2.92
62 63 6.659824 ACGAACTTACCCTTAATTGGATCAT 58.340 36.000 0.00 0.00 0.00 2.45
63 64 6.542370 ACGAACTTACCCTTAATTGGATCATG 59.458 38.462 0.00 0.00 0.00 3.07
64 65 6.513393 CGAACTTACCCTTAATTGGATCATGC 60.513 42.308 0.00 0.00 0.00 4.06
66 67 6.064717 ACTTACCCTTAATTGGATCATGCTC 58.935 40.000 0.00 0.00 0.00 4.26
68 69 4.467769 ACCCTTAATTGGATCATGCTCTG 58.532 43.478 0.00 0.00 0.00 3.35
69 70 3.825014 CCCTTAATTGGATCATGCTCTGG 59.175 47.826 0.00 0.00 0.00 3.86
70 71 3.255149 CCTTAATTGGATCATGCTCTGGC 59.745 47.826 0.00 0.00 39.26 4.85
71 72 2.750141 AATTGGATCATGCTCTGGCT 57.250 45.000 0.00 0.00 39.59 4.75
72 73 2.750141 ATTGGATCATGCTCTGGCTT 57.250 45.000 0.00 0.00 39.59 4.35
73 74 1.758936 TTGGATCATGCTCTGGCTTG 58.241 50.000 0.00 0.00 42.61 4.01
74 75 0.750546 TGGATCATGCTCTGGCTTGC 60.751 55.000 0.00 0.00 41.51 4.01
76 77 1.390565 GATCATGCTCTGGCTTGCTT 58.609 50.000 0.00 0.00 41.51 3.91
77 78 1.749634 GATCATGCTCTGGCTTGCTTT 59.250 47.619 0.00 0.00 41.51 3.51
78 79 0.885879 TCATGCTCTGGCTTGCTTTG 59.114 50.000 0.00 0.00 41.51 2.77
79 80 0.601558 CATGCTCTGGCTTGCTTTGT 59.398 50.000 0.00 0.00 36.94 2.83
81 82 2.205022 TGCTCTGGCTTGCTTTGTAT 57.795 45.000 0.00 0.00 39.59 2.29
82 83 1.814394 TGCTCTGGCTTGCTTTGTATG 59.186 47.619 0.00 0.00 39.59 2.39
83 84 1.468736 GCTCTGGCTTGCTTTGTATGC 60.469 52.381 0.00 0.00 35.22 3.14
85 86 2.086869 TCTGGCTTGCTTTGTATGCTC 58.913 47.619 0.00 0.00 0.00 4.26
86 87 1.814394 CTGGCTTGCTTTGTATGCTCA 59.186 47.619 0.00 0.00 0.00 4.26
87 88 2.426024 CTGGCTTGCTTTGTATGCTCAT 59.574 45.455 0.00 0.00 0.00 2.90
88 89 2.164827 TGGCTTGCTTTGTATGCTCATG 59.835 45.455 0.00 0.00 0.00 3.07
90 91 3.432782 GCTTGCTTTGTATGCTCATGAC 58.567 45.455 0.00 0.00 0.00 3.06
91 92 3.119743 GCTTGCTTTGTATGCTCATGACA 60.120 43.478 0.00 0.00 0.00 3.58
93 94 3.941573 TGCTTTGTATGCTCATGACAGA 58.058 40.909 0.00 0.00 0.00 3.41
94 95 4.325972 TGCTTTGTATGCTCATGACAGAA 58.674 39.130 0.00 0.00 0.00 3.02
95 96 4.393990 TGCTTTGTATGCTCATGACAGAAG 59.606 41.667 0.00 0.00 0.00 2.85
96 97 4.633126 GCTTTGTATGCTCATGACAGAAGA 59.367 41.667 0.00 0.00 0.00 2.87
98 99 4.806640 TGTATGCTCATGACAGAAGACA 57.193 40.909 0.00 0.00 0.00 3.41
99 100 4.498241 TGTATGCTCATGACAGAAGACAC 58.502 43.478 0.00 0.00 0.00 3.67
100 101 3.690475 ATGCTCATGACAGAAGACACA 57.310 42.857 0.00 0.00 0.00 3.72
101 102 3.690475 TGCTCATGACAGAAGACACAT 57.310 42.857 0.00 0.00 0.00 3.21
102 103 4.806640 TGCTCATGACAGAAGACACATA 57.193 40.909 0.00 0.00 0.00 2.29
103 104 4.752146 TGCTCATGACAGAAGACACATAG 58.248 43.478 0.00 0.00 0.00 2.23
104 105 3.555139 GCTCATGACAGAAGACACATAGC 59.445 47.826 0.00 0.00 0.00 2.97
105 106 4.118410 CTCATGACAGAAGACACATAGCC 58.882 47.826 0.00 0.00 0.00 3.93
106 107 3.515104 TCATGACAGAAGACACATAGCCA 59.485 43.478 0.00 0.00 0.00 4.75
107 108 3.319137 TGACAGAAGACACATAGCCAC 57.681 47.619 0.00 0.00 0.00 5.01
108 109 2.632512 TGACAGAAGACACATAGCCACA 59.367 45.455 0.00 0.00 0.00 4.17
110 111 2.899900 ACAGAAGACACATAGCCACAGA 59.100 45.455 0.00 0.00 0.00 3.41
111 112 3.056250 ACAGAAGACACATAGCCACAGAG 60.056 47.826 0.00 0.00 0.00 3.35
112 113 3.194329 CAGAAGACACATAGCCACAGAGA 59.806 47.826 0.00 0.00 0.00 3.10
113 114 3.834813 AGAAGACACATAGCCACAGAGAA 59.165 43.478 0.00 0.00 0.00 2.87
115 116 4.833478 AGACACATAGCCACAGAGAAAT 57.167 40.909 0.00 0.00 0.00 2.17
117 118 4.469227 AGACACATAGCCACAGAGAAATCT 59.531 41.667 0.00 0.00 0.00 2.40
118 119 4.764172 ACACATAGCCACAGAGAAATCTC 58.236 43.478 2.10 2.10 43.17 2.75
133 134 6.754702 AGAAATCTCTTGGACACATCAATG 57.245 37.500 0.00 0.00 0.00 2.82
134 135 5.651139 AGAAATCTCTTGGACACATCAATGG 59.349 40.000 0.00 0.00 0.00 3.16
135 136 3.354948 TCTCTTGGACACATCAATGGG 57.645 47.619 0.00 0.00 37.19 4.00
137 138 3.524789 TCTCTTGGACACATCAATGGGAT 59.475 43.478 0.00 0.00 34.60 3.85
138 139 3.881688 CTCTTGGACACATCAATGGGATC 59.118 47.826 0.00 0.00 34.60 3.36
139 140 3.524789 TCTTGGACACATCAATGGGATCT 59.475 43.478 0.00 0.00 34.60 2.75
141 142 4.422073 TGGACACATCAATGGGATCTAC 57.578 45.455 0.00 0.00 34.60 2.59
142 143 4.040047 TGGACACATCAATGGGATCTACT 58.960 43.478 0.00 0.00 34.60 2.57
143 144 4.141642 TGGACACATCAATGGGATCTACTG 60.142 45.833 0.00 0.00 34.60 2.74
144 145 4.384056 GACACATCAATGGGATCTACTGG 58.616 47.826 0.00 0.00 34.60 4.00
145 146 4.040047 ACACATCAATGGGATCTACTGGA 58.960 43.478 0.00 0.00 34.60 3.86
147 148 5.001874 CACATCAATGGGATCTACTGGATG 58.998 45.833 12.44 12.44 37.50 3.51
149 150 5.133322 ACATCAATGGGATCTACTGGATGTT 59.867 40.000 13.35 3.58 40.67 2.71
150 151 5.039920 TCAATGGGATCTACTGGATGTTG 57.960 43.478 0.00 0.00 34.33 3.33
151 152 3.498774 ATGGGATCTACTGGATGTTGC 57.501 47.619 0.00 0.00 34.33 4.17
153 154 2.092968 TGGGATCTACTGGATGTTGCAC 60.093 50.000 0.00 0.00 34.33 4.57
154 155 2.092968 GGGATCTACTGGATGTTGCACA 60.093 50.000 0.00 0.00 34.33 4.57
155 156 3.609853 GGATCTACTGGATGTTGCACAA 58.390 45.455 0.00 0.00 34.33 3.33
157 158 4.641989 GGATCTACTGGATGTTGCACAAAT 59.358 41.667 0.00 0.00 34.33 2.32
158 159 5.822519 GGATCTACTGGATGTTGCACAAATA 59.177 40.000 0.00 0.00 34.33 1.40
159 160 6.318648 GGATCTACTGGATGTTGCACAAATAA 59.681 38.462 0.00 0.00 34.33 1.40
160 161 7.148086 GGATCTACTGGATGTTGCACAAATAAA 60.148 37.037 0.00 0.00 34.33 1.40
162 163 7.946207 TCTACTGGATGTTGCACAAATAAAAA 58.054 30.769 0.00 0.00 0.00 1.94
181 182 4.724279 AAAATACGGGGCTAGAATGGAT 57.276 40.909 0.00 0.00 0.00 3.41
183 184 5.836024 AAATACGGGGCTAGAATGGATTA 57.164 39.130 0.00 0.00 0.00 1.75
184 185 6.388619 AAATACGGGGCTAGAATGGATTAT 57.611 37.500 0.00 0.00 0.00 1.28
186 187 4.021102 ACGGGGCTAGAATGGATTATTG 57.979 45.455 0.00 0.00 0.00 1.90
187 188 3.650942 ACGGGGCTAGAATGGATTATTGA 59.349 43.478 0.00 0.00 0.00 2.57
188 189 4.104102 ACGGGGCTAGAATGGATTATTGAA 59.896 41.667 0.00 0.00 0.00 2.69
189 190 4.697352 CGGGGCTAGAATGGATTATTGAAG 59.303 45.833 0.00 0.00 0.00 3.02
190 191 4.460731 GGGGCTAGAATGGATTATTGAAGC 59.539 45.833 0.00 0.00 34.59 3.86
191 192 5.320277 GGGCTAGAATGGATTATTGAAGCT 58.680 41.667 0.00 0.00 35.21 3.74
192 193 5.182760 GGGCTAGAATGGATTATTGAAGCTG 59.817 44.000 0.00 0.00 35.21 4.24
193 194 5.335504 GGCTAGAATGGATTATTGAAGCTGC 60.336 44.000 0.00 0.00 35.21 5.25
194 195 5.240183 GCTAGAATGGATTATTGAAGCTGCA 59.760 40.000 1.02 0.00 33.47 4.41
196 197 7.120285 GCTAGAATGGATTATTGAAGCTGCATA 59.880 37.037 0.00 0.00 33.47 3.14
197 198 9.175312 CTAGAATGGATTATTGAAGCTGCATAT 57.825 33.333 0.00 0.00 0.00 1.78
198 199 7.827701 AGAATGGATTATTGAAGCTGCATATG 58.172 34.615 0.00 0.00 0.00 1.78
199 200 7.668469 AGAATGGATTATTGAAGCTGCATATGA 59.332 33.333 6.97 0.00 0.00 2.15
202 203 7.173032 TGGATTATTGAAGCTGCATATGATCT 58.827 34.615 6.97 0.00 0.00 2.75
203 204 8.323567 TGGATTATTGAAGCTGCATATGATCTA 58.676 33.333 6.97 10.21 0.00 1.98
204 205 9.339850 GGATTATTGAAGCTGCATATGATCTAT 57.660 33.333 6.97 1.92 0.00 1.98
207 208 7.851387 ATTGAAGCTGCATATGATCTATCTG 57.149 36.000 6.97 0.00 0.00 2.90
209 210 7.001099 TGAAGCTGCATATGATCTATCTGAA 57.999 36.000 6.97 0.00 0.00 3.02
210 211 7.621796 TGAAGCTGCATATGATCTATCTGAAT 58.378 34.615 6.97 0.00 0.00 2.57
211 212 8.101419 TGAAGCTGCATATGATCTATCTGAATT 58.899 33.333 6.97 0.00 0.00 2.17
212 213 8.865420 AAGCTGCATATGATCTATCTGAATTT 57.135 30.769 6.97 0.00 0.00 1.82
213 214 9.955102 AAGCTGCATATGATCTATCTGAATTTA 57.045 29.630 6.97 0.00 0.00 1.40
214 215 9.955102 AGCTGCATATGATCTATCTGAATTTAA 57.045 29.630 6.97 0.00 0.00 1.52
225 226 8.451908 TCTATCTGAATTTAAAAGGCTTAGGC 57.548 34.615 0.00 0.00 37.82 3.93
226 227 8.275040 TCTATCTGAATTTAAAAGGCTTAGGCT 58.725 33.333 1.28 1.28 41.24 4.58
227 228 6.759497 TCTGAATTTAAAAGGCTTAGGCTC 57.241 37.500 9.20 0.00 37.50 4.70
228 229 6.485171 TCTGAATTTAAAAGGCTTAGGCTCT 58.515 36.000 9.20 2.12 37.50 4.09
230 231 7.451566 TCTGAATTTAAAAGGCTTAGGCTCTTT 59.548 33.333 9.20 13.39 37.50 2.52
231 232 8.644374 TGAATTTAAAAGGCTTAGGCTCTTTA 57.356 30.769 9.20 12.49 37.50 1.85
232 233 9.255029 TGAATTTAAAAGGCTTAGGCTCTTTAT 57.745 29.630 9.20 0.00 37.50 1.40
235 236 8.417273 TTTAAAAGGCTTAGGCTCTTTATGTT 57.583 30.769 9.20 0.00 37.50 2.71
236 237 5.904362 AAAGGCTTAGGCTCTTTATGTTG 57.096 39.130 9.20 0.00 37.50 3.33
237 238 3.282885 AGGCTTAGGCTCTTTATGTTGC 58.717 45.455 1.28 0.00 38.73 4.17
238 239 3.054065 AGGCTTAGGCTCTTTATGTTGCT 60.054 43.478 1.28 0.00 38.73 3.91
239 240 3.065925 GGCTTAGGCTCTTTATGTTGCTG 59.934 47.826 0.00 0.00 38.73 4.41
240 241 3.691609 GCTTAGGCTCTTTATGTTGCTGT 59.308 43.478 0.00 0.00 35.22 4.40
241 242 4.437930 GCTTAGGCTCTTTATGTTGCTGTG 60.438 45.833 0.00 0.00 35.22 3.66
243 244 1.135286 GGCTCTTTATGTTGCTGTGGC 60.135 52.381 0.00 0.00 39.26 5.01
244 245 1.466360 GCTCTTTATGTTGCTGTGGCG 60.466 52.381 0.00 0.00 42.25 5.69
246 247 3.000041 CTCTTTATGTTGCTGTGGCGTA 59.000 45.455 0.00 0.00 42.25 4.42
247 248 3.605634 TCTTTATGTTGCTGTGGCGTAT 58.394 40.909 0.00 0.00 42.25 3.06
249 250 4.457603 TCTTTATGTTGCTGTGGCGTATTT 59.542 37.500 0.00 0.00 42.25 1.40
252 253 0.596082 GTTGCTGTGGCGTATTTGGT 59.404 50.000 0.00 0.00 42.25 3.67
253 254 1.807742 GTTGCTGTGGCGTATTTGGTA 59.192 47.619 0.00 0.00 42.25 3.25
254 255 1.444836 TGCTGTGGCGTATTTGGTAC 58.555 50.000 0.00 0.00 42.25 3.34
267 268 3.328382 TTTGGTACGTCAGGAATGAGG 57.672 47.619 0.00 0.00 0.00 3.86
268 269 1.933021 TGGTACGTCAGGAATGAGGT 58.067 50.000 8.44 8.44 39.73 3.85
269 270 3.090210 TGGTACGTCAGGAATGAGGTA 57.910 47.619 0.00 6.69 37.90 3.08
270 271 3.021695 TGGTACGTCAGGAATGAGGTAG 58.978 50.000 10.18 0.00 39.05 3.18
272 273 3.181489 GGTACGTCAGGAATGAGGTAGTG 60.181 52.174 10.18 0.00 39.05 2.74
273 274 1.204941 ACGTCAGGAATGAGGTAGTGC 59.795 52.381 2.02 0.00 35.48 4.40
274 275 1.204704 CGTCAGGAATGAGGTAGTGCA 59.795 52.381 0.00 0.00 0.00 4.57
275 276 2.159043 CGTCAGGAATGAGGTAGTGCAT 60.159 50.000 0.00 0.00 0.00 3.96
276 277 3.201290 GTCAGGAATGAGGTAGTGCATG 58.799 50.000 0.00 0.00 0.00 4.06
277 278 2.840038 TCAGGAATGAGGTAGTGCATGT 59.160 45.455 0.00 0.00 0.00 3.21
279 280 2.840038 AGGAATGAGGTAGTGCATGTGA 59.160 45.455 0.00 0.00 0.00 3.58
280 281 3.264193 AGGAATGAGGTAGTGCATGTGAA 59.736 43.478 0.00 0.00 0.00 3.18
282 283 4.142600 GGAATGAGGTAGTGCATGTGAAAC 60.143 45.833 0.00 0.00 37.35 2.78
283 284 2.778299 TGAGGTAGTGCATGTGAAACC 58.222 47.619 0.00 0.00 34.36 3.27
284 285 2.105649 TGAGGTAGTGCATGTGAAACCA 59.894 45.455 10.65 0.00 34.36 3.67
285 286 2.484264 GAGGTAGTGCATGTGAAACCAC 59.516 50.000 10.65 2.40 34.36 4.16
286 287 2.106511 AGGTAGTGCATGTGAAACCACT 59.893 45.455 6.63 6.63 39.58 4.00
287 288 2.226437 GGTAGTGCATGTGAAACCACTG 59.774 50.000 10.54 0.00 37.42 3.66
308 309 6.003950 ACTGCAAACTTGTTCCATATGTAGT 58.996 36.000 1.24 0.00 0.00 2.73
313 314 9.542462 GCAAACTTGTTCCATATGTAGTAGATA 57.458 33.333 1.24 0.00 0.00 1.98
335 336 0.889186 GTGACAACCGAGGCAATGGT 60.889 55.000 0.00 0.00 41.20 3.55
339 340 3.055021 TGACAACCGAGGCAATGGTTATA 60.055 43.478 7.58 0.00 46.47 0.98
347 348 5.116180 CGAGGCAATGGTTATAAGAGACAA 58.884 41.667 0.00 0.00 0.00 3.18
349 350 6.260936 CGAGGCAATGGTTATAAGAGACAATT 59.739 38.462 0.00 0.00 0.00 2.32
350 351 7.201732 CGAGGCAATGGTTATAAGAGACAATTT 60.202 37.037 0.00 0.00 0.00 1.82
352 353 8.470002 AGGCAATGGTTATAAGAGACAATTTTC 58.530 33.333 0.00 0.00 0.00 2.29
354 355 9.294030 GCAATGGTTATAAGAGACAATTTTCAG 57.706 33.333 0.00 0.00 0.00 3.02
355 356 9.294030 CAATGGTTATAAGAGACAATTTTCAGC 57.706 33.333 0.00 0.00 0.00 4.26
357 358 6.945435 TGGTTATAAGAGACAATTTTCAGCCA 59.055 34.615 0.00 0.00 0.00 4.75
358 359 7.121168 TGGTTATAAGAGACAATTTTCAGCCAG 59.879 37.037 0.00 0.00 0.00 4.85
376 377 3.190744 GCCAGTAAGCACTTTAGGTTTCC 59.809 47.826 0.00 0.00 30.46 3.13
383 384 4.019174 AGCACTTTAGGTTTCCATCATGG 58.981 43.478 0.00 0.00 39.43 3.66
385 386 3.131046 CACTTTAGGTTTCCATCATGGGC 59.869 47.826 3.05 0.00 38.32 5.36
424 425 7.065120 TCCCAAGATGTGATCAATTTTTGTT 57.935 32.000 0.00 0.00 0.00 2.83
429 430 9.903682 CAAGATGTGATCAATTTTTGTTCTAGT 57.096 29.630 0.00 0.00 32.07 2.57
437 438 9.736023 GATCAATTTTTGTTCTAGTCAAACAGT 57.264 29.630 12.62 6.12 37.86 3.55
439 440 9.997482 TCAATTTTTGTTCTAGTCAAACAGTAC 57.003 29.630 12.62 0.00 37.86 2.73
449 450 1.695242 TCAAACAGTACGGTGGGATGT 59.305 47.619 0.00 0.00 0.00 3.06
452 453 1.449601 CAGTACGGTGGGATGTGGC 60.450 63.158 0.00 0.00 0.00 5.01
466 467 1.317613 TGTGGCGTCTGCAATCTTTT 58.682 45.000 0.00 0.00 45.35 2.27
467 468 1.001487 TGTGGCGTCTGCAATCTTTTG 60.001 47.619 0.00 0.00 45.35 2.44
497 498 3.885724 TGACATTGGAGCTACGATTGA 57.114 42.857 0.00 0.00 0.00 2.57
550 551 4.075763 GCTAATCAAGCGGCATATCAAG 57.924 45.455 1.45 0.00 42.53 3.02
551 552 3.669023 GCTAATCAAGCGGCATATCAAGC 60.669 47.826 1.45 0.54 42.53 4.01
552 553 0.870393 ATCAAGCGGCATATCAAGCG 59.130 50.000 1.45 0.00 34.34 4.68
553 554 1.159713 TCAAGCGGCATATCAAGCGG 61.160 55.000 1.45 0.00 35.67 5.52
573 574 3.065233 CGGCATGTGCTAGCTAATTTCAA 59.935 43.478 17.23 0.00 41.70 2.69
622 624 4.264460 GATTGGCGATCCTCTAGATTGT 57.736 45.455 3.11 0.00 38.50 2.71
623 625 3.735237 TTGGCGATCCTCTAGATTGTC 57.265 47.619 0.00 0.00 40.89 3.18
624 626 2.950781 TGGCGATCCTCTAGATTGTCT 58.049 47.619 0.00 0.00 41.07 3.41
625 627 2.625314 TGGCGATCCTCTAGATTGTCTG 59.375 50.000 0.00 0.00 41.07 3.51
626 628 2.887783 GGCGATCCTCTAGATTGTCTGA 59.112 50.000 0.00 0.00 37.91 3.27
627 629 3.509575 GGCGATCCTCTAGATTGTCTGAT 59.490 47.826 0.00 0.00 37.91 2.90
629 631 5.184096 GGCGATCCTCTAGATTGTCTGATTA 59.816 44.000 0.00 0.00 37.91 1.75
631 633 7.319646 GCGATCCTCTAGATTGTCTGATTAAT 58.680 38.462 0.00 0.00 38.50 1.40
632 634 7.275341 GCGATCCTCTAGATTGTCTGATTAATG 59.725 40.741 0.00 0.00 38.50 1.90
633 635 8.303156 CGATCCTCTAGATTGTCTGATTAATGT 58.697 37.037 0.00 0.00 34.42 2.71
636 638 8.861086 TCCTCTAGATTGTCTGATTAATGTACC 58.139 37.037 0.00 0.00 0.00 3.34
637 639 8.091449 CCTCTAGATTGTCTGATTAATGTACCC 58.909 40.741 0.00 0.00 0.00 3.69
638 640 7.658261 TCTAGATTGTCTGATTAATGTACCCG 58.342 38.462 0.00 0.00 0.00 5.28
639 641 6.235231 AGATTGTCTGATTAATGTACCCGT 57.765 37.500 0.00 0.00 0.00 5.28
640 642 7.356089 AGATTGTCTGATTAATGTACCCGTA 57.644 36.000 0.00 0.00 0.00 4.02
641 643 7.434492 AGATTGTCTGATTAATGTACCCGTAG 58.566 38.462 0.00 0.00 0.00 3.51
642 644 6.778834 TTGTCTGATTAATGTACCCGTAGA 57.221 37.500 0.00 0.00 0.00 2.59
643 645 6.140303 TGTCTGATTAATGTACCCGTAGAC 57.860 41.667 0.00 0.00 34.25 2.59
645 647 5.008019 GTCTGATTAATGTACCCGTAGACGA 59.992 44.000 3.07 0.00 43.02 4.20
770 2350 4.043608 ACACTAGTAGCTACCCTTCACA 57.956 45.455 20.31 0.00 0.00 3.58
792 2372 0.597568 TGGGCTGAATTTGACTTGCG 59.402 50.000 0.00 0.00 0.00 4.85
856 2439 2.284699 CCTCGTCAACCTCCCCCT 60.285 66.667 0.00 0.00 0.00 4.79
877 2469 2.032528 TGGCCGCTCAGGTTCTTG 59.967 61.111 0.00 0.00 43.70 3.02
878 2470 2.032681 GGCCGCTCAGGTTCTTGT 59.967 61.111 0.00 0.00 43.70 3.16
879 2471 2.035442 GGCCGCTCAGGTTCTTGTC 61.035 63.158 0.00 0.00 43.70 3.18
880 2472 2.035442 GCCGCTCAGGTTCTTGTCC 61.035 63.158 0.00 0.00 43.70 4.02
882 2474 1.738099 CGCTCAGGTTCTTGTCCCG 60.738 63.158 0.00 0.00 0.00 5.14
886 2478 4.699522 AGGTTCTTGTCCCGCCGC 62.700 66.667 0.00 0.00 0.00 6.53
1212 4289 3.760684 ACGAGGACTATGAAGGTTACGTT 59.239 43.478 0.00 0.00 0.00 3.99
1264 4341 4.415332 AGGCGACGGTGCACTACG 62.415 66.667 17.98 19.14 36.28 3.51
1372 4452 3.252554 TGGGGCATACCAAAGTTCTTT 57.747 42.857 0.00 0.00 42.91 2.52
1561 4644 0.178961 AGGTGCAAGGGGAGGTTTTC 60.179 55.000 0.00 0.00 0.00 2.29
1792 4876 2.159226 ACTCGTGGCTGCAGATAAGTAC 60.159 50.000 20.43 5.22 0.00 2.73
1800 4884 0.784778 GCAGATAAGTACGCGATGGC 59.215 55.000 15.93 0.00 0.00 4.40
1835 4919 1.888215 ATGTGAAGGGATGCTATGCG 58.112 50.000 0.00 0.00 0.00 4.73
2007 5091 4.331108 AGATCTTTTCCTGGTCTCTTTGC 58.669 43.478 0.00 0.00 0.00 3.68
2459 5594 7.581213 TCAAAATGGAACTGATAACACAACT 57.419 32.000 0.00 0.00 0.00 3.16
2496 5632 6.962686 TGTCAGTTTTGAGATGATCTGTTTG 58.037 36.000 0.00 0.00 32.98 2.93
2573 5710 7.964604 AGTTAGAGACAGTTACAAATGGTTC 57.035 36.000 0.00 0.00 0.00 3.62
2690 9222 1.967319 ATATGCAATCGCTTCCCGTT 58.033 45.000 0.00 0.00 39.64 4.44
2691 9223 1.295792 TATGCAATCGCTTCCCGTTC 58.704 50.000 0.00 0.00 39.64 3.95
2692 9224 0.676466 ATGCAATCGCTTCCCGTTCA 60.676 50.000 0.00 0.00 39.64 3.18
2693 9225 1.298157 TGCAATCGCTTCCCGTTCAG 61.298 55.000 0.00 0.00 39.64 3.02
2694 9226 1.982073 GCAATCGCTTCCCGTTCAGG 61.982 60.000 0.00 0.00 38.35 3.86
2695 9227 1.745489 AATCGCTTCCCGTTCAGGC 60.745 57.895 0.00 0.00 39.21 4.85
2696 9228 2.185310 AATCGCTTCCCGTTCAGGCT 62.185 55.000 0.00 0.00 39.21 4.58
2697 9229 2.185310 ATCGCTTCCCGTTCAGGCTT 62.185 55.000 0.00 0.00 39.21 4.35
2698 9230 1.966451 CGCTTCCCGTTCAGGCTTT 60.966 57.895 0.00 0.00 39.21 3.51
2699 9231 1.581447 GCTTCCCGTTCAGGCTTTG 59.419 57.895 0.00 0.00 39.21 2.77
2700 9232 1.172812 GCTTCCCGTTCAGGCTTTGT 61.173 55.000 0.00 0.00 39.21 2.83
2701 9233 1.318576 CTTCCCGTTCAGGCTTTGTT 58.681 50.000 0.00 0.00 39.21 2.83
2702 9234 1.266989 CTTCCCGTTCAGGCTTTGTTC 59.733 52.381 0.00 0.00 39.21 3.18
2703 9235 0.882927 TCCCGTTCAGGCTTTGTTCG 60.883 55.000 0.00 0.00 39.21 3.95
2704 9236 1.574428 CCGTTCAGGCTTTGTTCGG 59.426 57.895 0.00 0.00 37.59 4.30
2705 9237 1.164041 CCGTTCAGGCTTTGTTCGGT 61.164 55.000 13.61 0.00 38.36 4.69
2706 9238 0.661020 CGTTCAGGCTTTGTTCGGTT 59.339 50.000 0.00 0.00 0.00 4.44
2707 9239 1.868498 CGTTCAGGCTTTGTTCGGTTA 59.132 47.619 0.00 0.00 0.00 2.85
2708 9240 2.288458 CGTTCAGGCTTTGTTCGGTTAA 59.712 45.455 0.00 0.00 0.00 2.01
2709 9241 3.058501 CGTTCAGGCTTTGTTCGGTTAAT 60.059 43.478 0.00 0.00 0.00 1.40
2710 9242 4.473199 GTTCAGGCTTTGTTCGGTTAATC 58.527 43.478 0.00 0.00 0.00 1.75
2711 9243 4.015872 TCAGGCTTTGTTCGGTTAATCT 57.984 40.909 0.00 0.00 0.00 2.40
2712 9244 4.000988 TCAGGCTTTGTTCGGTTAATCTC 58.999 43.478 0.00 0.00 0.00 2.75
2713 9245 3.751175 CAGGCTTTGTTCGGTTAATCTCA 59.249 43.478 0.00 0.00 0.00 3.27
2714 9246 4.396166 CAGGCTTTGTTCGGTTAATCTCAT 59.604 41.667 0.00 0.00 0.00 2.90
2715 9247 4.636206 AGGCTTTGTTCGGTTAATCTCATC 59.364 41.667 0.00 0.00 0.00 2.92
2716 9248 4.201920 GGCTTTGTTCGGTTAATCTCATCC 60.202 45.833 0.00 0.00 0.00 3.51
2717 9249 4.394920 GCTTTGTTCGGTTAATCTCATCCA 59.605 41.667 0.00 0.00 0.00 3.41
2718 9250 5.673818 GCTTTGTTCGGTTAATCTCATCCAC 60.674 44.000 0.00 0.00 0.00 4.02
2719 9251 4.545208 TGTTCGGTTAATCTCATCCACA 57.455 40.909 0.00 0.00 0.00 4.17
2720 9252 4.900684 TGTTCGGTTAATCTCATCCACAA 58.099 39.130 0.00 0.00 0.00 3.33
2721 9253 4.935205 TGTTCGGTTAATCTCATCCACAAG 59.065 41.667 0.00 0.00 0.00 3.16
2722 9254 4.819105 TCGGTTAATCTCATCCACAAGT 57.181 40.909 0.00 0.00 0.00 3.16
2723 9255 4.503910 TCGGTTAATCTCATCCACAAGTG 58.496 43.478 0.00 0.00 0.00 3.16
2757 9289 2.440247 GGGGGAGGATTTGCACGG 60.440 66.667 0.00 0.00 0.00 4.94
2758 9290 2.674754 GGGGAGGATTTGCACGGA 59.325 61.111 0.00 0.00 0.00 4.69
2759 9291 1.227383 GGGGAGGATTTGCACGGAT 59.773 57.895 0.00 0.00 0.00 4.18
2760 9292 0.395724 GGGGAGGATTTGCACGGATT 60.396 55.000 0.00 0.00 0.00 3.01
2761 9293 1.474330 GGGAGGATTTGCACGGATTT 58.526 50.000 0.00 0.00 0.00 2.17
2762 9294 1.824852 GGGAGGATTTGCACGGATTTT 59.175 47.619 0.00 0.00 0.00 1.82
2763 9295 2.417243 GGGAGGATTTGCACGGATTTTG 60.417 50.000 0.00 0.00 0.00 2.44
2764 9296 2.417243 GGAGGATTTGCACGGATTTTGG 60.417 50.000 0.00 0.00 0.00 3.28
2765 9297 1.066929 AGGATTTGCACGGATTTTGGC 60.067 47.619 0.00 0.00 0.00 4.52
2766 9298 1.066929 GGATTTGCACGGATTTTGGCT 60.067 47.619 0.00 0.00 0.00 4.75
2767 9299 2.612721 GGATTTGCACGGATTTTGGCTT 60.613 45.455 0.00 0.00 0.00 4.35
2768 9300 1.863267 TTTGCACGGATTTTGGCTTG 58.137 45.000 0.00 0.00 0.00 4.01
2769 9301 0.749649 TTGCACGGATTTTGGCTTGT 59.250 45.000 0.00 0.00 0.00 3.16
2770 9302 1.610363 TGCACGGATTTTGGCTTGTA 58.390 45.000 0.00 0.00 0.00 2.41
2771 9303 1.539388 TGCACGGATTTTGGCTTGTAG 59.461 47.619 0.00 0.00 0.00 2.74
2772 9304 1.135402 GCACGGATTTTGGCTTGTAGG 60.135 52.381 0.00 0.00 0.00 3.18
2773 9305 1.472480 CACGGATTTTGGCTTGTAGGG 59.528 52.381 0.00 0.00 0.00 3.53
2774 9306 1.102978 CGGATTTTGGCTTGTAGGGG 58.897 55.000 0.00 0.00 0.00 4.79
2775 9307 1.340600 CGGATTTTGGCTTGTAGGGGA 60.341 52.381 0.00 0.00 0.00 4.81
2776 9308 2.686715 CGGATTTTGGCTTGTAGGGGAT 60.687 50.000 0.00 0.00 0.00 3.85
2777 9309 3.374764 GGATTTTGGCTTGTAGGGGATT 58.625 45.455 0.00 0.00 0.00 3.01
2778 9310 4.542697 GGATTTTGGCTTGTAGGGGATTA 58.457 43.478 0.00 0.00 0.00 1.75
2779 9311 4.959839 GGATTTTGGCTTGTAGGGGATTAA 59.040 41.667 0.00 0.00 0.00 1.40
2780 9312 5.602561 GGATTTTGGCTTGTAGGGGATTAAT 59.397 40.000 0.00 0.00 0.00 1.40
2781 9313 6.099701 GGATTTTGGCTTGTAGGGGATTAATT 59.900 38.462 0.00 0.00 0.00 1.40
2782 9314 6.538945 TTTTGGCTTGTAGGGGATTAATTC 57.461 37.500 0.00 0.00 0.00 2.17
2783 9315 4.178956 TGGCTTGTAGGGGATTAATTCC 57.821 45.455 3.88 3.88 44.62 3.01
2794 9326 3.296854 GGATTAATTCCACCTCAACCCC 58.703 50.000 0.00 0.00 44.74 4.95
2795 9327 2.911552 TTAATTCCACCTCAACCCCC 57.088 50.000 0.00 0.00 0.00 5.40
2796 9328 2.068831 TAATTCCACCTCAACCCCCT 57.931 50.000 0.00 0.00 0.00 4.79
2797 9329 1.167033 AATTCCACCTCAACCCCCTT 58.833 50.000 0.00 0.00 0.00 3.95
2798 9330 0.704664 ATTCCACCTCAACCCCCTTC 59.295 55.000 0.00 0.00 0.00 3.46
2799 9331 0.699577 TTCCACCTCAACCCCCTTCA 60.700 55.000 0.00 0.00 0.00 3.02
2800 9332 0.699577 TCCACCTCAACCCCCTTCAA 60.700 55.000 0.00 0.00 0.00 2.69
2801 9333 0.409484 CCACCTCAACCCCCTTCAAT 59.591 55.000 0.00 0.00 0.00 2.57
2802 9334 1.203174 CCACCTCAACCCCCTTCAATT 60.203 52.381 0.00 0.00 0.00 2.32
2803 9335 2.171003 CACCTCAACCCCCTTCAATTC 58.829 52.381 0.00 0.00 0.00 2.17
2804 9336 1.077169 ACCTCAACCCCCTTCAATTCC 59.923 52.381 0.00 0.00 0.00 3.01
2805 9337 1.077005 CCTCAACCCCCTTCAATTCCA 59.923 52.381 0.00 0.00 0.00 3.53
2806 9338 2.171003 CTCAACCCCCTTCAATTCCAC 58.829 52.381 0.00 0.00 0.00 4.02
2807 9339 1.203125 TCAACCCCCTTCAATTCCACC 60.203 52.381 0.00 0.00 0.00 4.61
2808 9340 1.167033 AACCCCCTTCAATTCCACCT 58.833 50.000 0.00 0.00 0.00 4.00
2809 9341 0.704664 ACCCCCTTCAATTCCACCTC 59.295 55.000 0.00 0.00 0.00 3.85
2810 9342 0.704076 CCCCCTTCAATTCCACCTCA 59.296 55.000 0.00 0.00 0.00 3.86
2811 9343 1.077005 CCCCCTTCAATTCCACCTCAA 59.923 52.381 0.00 0.00 0.00 3.02
2812 9344 2.171003 CCCCTTCAATTCCACCTCAAC 58.829 52.381 0.00 0.00 0.00 3.18
2813 9345 2.171003 CCCTTCAATTCCACCTCAACC 58.829 52.381 0.00 0.00 0.00 3.77
2814 9346 1.812571 CCTTCAATTCCACCTCAACCG 59.187 52.381 0.00 0.00 0.00 4.44
2815 9347 2.552155 CCTTCAATTCCACCTCAACCGA 60.552 50.000 0.00 0.00 0.00 4.69
2816 9348 2.940994 TCAATTCCACCTCAACCGAA 57.059 45.000 0.00 0.00 0.00 4.30
2817 9349 2.500229 TCAATTCCACCTCAACCGAAC 58.500 47.619 0.00 0.00 0.00 3.95
2818 9350 2.158740 TCAATTCCACCTCAACCGAACA 60.159 45.455 0.00 0.00 0.00 3.18
2819 9351 2.621055 CAATTCCACCTCAACCGAACAA 59.379 45.455 0.00 0.00 0.00 2.83
2820 9352 1.961793 TTCCACCTCAACCGAACAAG 58.038 50.000 0.00 0.00 0.00 3.16
2821 9353 0.534203 TCCACCTCAACCGAACAAGC 60.534 55.000 0.00 0.00 0.00 4.01
2822 9354 1.515521 CCACCTCAACCGAACAAGCC 61.516 60.000 0.00 0.00 0.00 4.35
2823 9355 1.228154 ACCTCAACCGAACAAGCCC 60.228 57.895 0.00 0.00 0.00 5.19
2916 9448 7.854557 TTTATTGAGTGAATCAGATCAGTGG 57.145 36.000 0.00 0.00 39.68 4.00
2919 9451 5.688814 TGAGTGAATCAGATCAGTGGATT 57.311 39.130 0.00 0.00 33.17 3.01
2997 9530 5.717078 ATCAAGTTGCATGTCTCATTTGT 57.283 34.783 0.00 0.00 0.00 2.83
3002 9535 5.663456 AGTTGCATGTCTCATTTGTGTTTT 58.337 33.333 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.037772 CCTTGTGGAGCAGTCTAGTTGT 59.962 50.000 0.00 0.00 34.57 3.32
2 3 2.613977 CCCTTGTGGAGCAGTCTAGTTG 60.614 54.545 0.00 0.00 35.39 3.16
3 4 1.625818 CCCTTGTGGAGCAGTCTAGTT 59.374 52.381 0.00 0.00 35.39 2.24
4 5 1.270907 CCCTTGTGGAGCAGTCTAGT 58.729 55.000 0.00 0.00 35.39 2.57
6 7 0.178903 ACCCCTTGTGGAGCAGTCTA 60.179 55.000 0.00 0.00 35.39 2.59
7 8 1.062488 AACCCCTTGTGGAGCAGTCT 61.062 55.000 0.00 0.00 35.39 3.24
8 9 0.606673 GAACCCCTTGTGGAGCAGTC 60.607 60.000 0.00 0.00 35.39 3.51
9 10 1.352622 TGAACCCCTTGTGGAGCAGT 61.353 55.000 0.00 0.00 35.39 4.40
10 11 0.178992 TTGAACCCCTTGTGGAGCAG 60.179 55.000 0.00 0.00 35.39 4.24
13 14 2.162681 GATGTTGAACCCCTTGTGGAG 58.837 52.381 0.00 0.00 35.39 3.86
14 15 1.496857 TGATGTTGAACCCCTTGTGGA 59.503 47.619 0.00 0.00 35.39 4.02
15 16 1.993956 TGATGTTGAACCCCTTGTGG 58.006 50.000 0.00 0.00 0.00 4.17
18 19 3.304659 CGTTCTTGATGTTGAACCCCTTG 60.305 47.826 0.00 0.00 39.30 3.61
19 20 2.884639 CGTTCTTGATGTTGAACCCCTT 59.115 45.455 0.00 0.00 39.30 3.95
20 21 2.105821 TCGTTCTTGATGTTGAACCCCT 59.894 45.455 0.00 0.00 39.30 4.79
21 22 2.500229 TCGTTCTTGATGTTGAACCCC 58.500 47.619 0.00 0.00 39.30 4.95
23 24 4.813296 AGTTCGTTCTTGATGTTGAACC 57.187 40.909 0.00 0.00 39.30 3.62
24 25 6.134061 GGTAAGTTCGTTCTTGATGTTGAAC 58.866 40.000 0.00 0.00 39.15 3.18
27 28 4.755123 AGGGTAAGTTCGTTCTTGATGTTG 59.245 41.667 5.44 0.00 0.00 3.33
28 29 4.969484 AGGGTAAGTTCGTTCTTGATGTT 58.031 39.130 5.44 0.00 0.00 2.71
29 30 4.618920 AGGGTAAGTTCGTTCTTGATGT 57.381 40.909 5.44 0.00 0.00 3.06
30 31 7.611213 ATTAAGGGTAAGTTCGTTCTTGATG 57.389 36.000 5.44 0.00 0.00 3.07
31 32 7.120726 CCAATTAAGGGTAAGTTCGTTCTTGAT 59.879 37.037 5.44 0.00 0.00 2.57
33 34 6.428771 TCCAATTAAGGGTAAGTTCGTTCTTG 59.571 38.462 5.44 0.00 0.00 3.02
34 35 6.536447 TCCAATTAAGGGTAAGTTCGTTCTT 58.464 36.000 0.00 1.38 0.00 2.52
35 36 6.117975 TCCAATTAAGGGTAAGTTCGTTCT 57.882 37.500 0.00 0.00 0.00 3.01
36 37 6.596497 TGATCCAATTAAGGGTAAGTTCGTTC 59.404 38.462 0.00 0.00 0.00 3.95
39 40 6.513393 GCATGATCCAATTAAGGGTAAGTTCG 60.513 42.308 0.00 0.00 0.00 3.95
40 41 6.547510 AGCATGATCCAATTAAGGGTAAGTTC 59.452 38.462 0.00 0.00 0.00 3.01
41 42 6.435164 AGCATGATCCAATTAAGGGTAAGTT 58.565 36.000 0.00 0.00 0.00 2.66
42 43 6.018433 AGCATGATCCAATTAAGGGTAAGT 57.982 37.500 0.00 0.00 0.00 2.24
43 44 6.206243 CAGAGCATGATCCAATTAAGGGTAAG 59.794 42.308 7.49 0.00 0.00 2.34
44 45 6.064060 CAGAGCATGATCCAATTAAGGGTAA 58.936 40.000 7.49 0.00 0.00 2.85
47 48 3.825014 CCAGAGCATGATCCAATTAAGGG 59.175 47.826 7.49 0.00 0.00 3.95
48 49 3.255149 GCCAGAGCATGATCCAATTAAGG 59.745 47.826 7.49 0.16 39.53 2.69
49 50 4.142790 AGCCAGAGCATGATCCAATTAAG 58.857 43.478 7.49 0.00 43.56 1.85
50 51 4.174704 AGCCAGAGCATGATCCAATTAA 57.825 40.909 7.49 0.00 43.56 1.40
51 52 3.870538 AGCCAGAGCATGATCCAATTA 57.129 42.857 7.49 0.00 43.56 1.40
53 54 2.307768 CAAGCCAGAGCATGATCCAAT 58.692 47.619 7.49 0.00 40.14 3.16
54 55 1.758936 CAAGCCAGAGCATGATCCAA 58.241 50.000 7.49 0.00 40.14 3.53
55 56 0.750546 GCAAGCCAGAGCATGATCCA 60.751 55.000 7.49 0.00 40.14 3.41
56 57 0.465824 AGCAAGCCAGAGCATGATCC 60.466 55.000 7.49 0.00 40.14 3.36
57 58 1.390565 AAGCAAGCCAGAGCATGATC 58.609 50.000 1.78 1.78 40.14 2.92
59 60 0.885879 CAAAGCAAGCCAGAGCATGA 59.114 50.000 0.00 0.00 40.14 3.07
60 61 0.601558 ACAAAGCAAGCCAGAGCATG 59.398 50.000 0.00 0.00 43.56 4.06
61 62 2.205022 TACAAAGCAAGCCAGAGCAT 57.795 45.000 0.00 0.00 43.56 3.79
62 63 1.814394 CATACAAAGCAAGCCAGAGCA 59.186 47.619 0.00 0.00 43.56 4.26
63 64 1.468736 GCATACAAAGCAAGCCAGAGC 60.469 52.381 0.00 0.00 40.32 4.09
64 65 2.089980 AGCATACAAAGCAAGCCAGAG 58.910 47.619 0.00 0.00 0.00 3.35
66 67 1.814394 TGAGCATACAAAGCAAGCCAG 59.186 47.619 0.00 0.00 0.00 4.85
68 69 2.424601 TCATGAGCATACAAAGCAAGCC 59.575 45.455 0.00 0.00 0.00 4.35
69 70 3.119743 TGTCATGAGCATACAAAGCAAGC 60.120 43.478 0.00 0.00 0.00 4.01
70 71 4.393990 TCTGTCATGAGCATACAAAGCAAG 59.606 41.667 0.00 0.00 0.00 4.01
71 72 4.325972 TCTGTCATGAGCATACAAAGCAA 58.674 39.130 0.00 0.00 0.00 3.91
72 73 3.941573 TCTGTCATGAGCATACAAAGCA 58.058 40.909 0.00 0.00 0.00 3.91
73 74 4.633126 TCTTCTGTCATGAGCATACAAAGC 59.367 41.667 0.00 0.00 0.00 3.51
74 75 5.640783 TGTCTTCTGTCATGAGCATACAAAG 59.359 40.000 0.00 0.00 0.00 2.77
76 77 4.931601 GTGTCTTCTGTCATGAGCATACAA 59.068 41.667 0.00 0.00 0.00 2.41
77 78 4.021192 TGTGTCTTCTGTCATGAGCATACA 60.021 41.667 0.00 0.00 0.00 2.29
78 79 4.498241 TGTGTCTTCTGTCATGAGCATAC 58.502 43.478 0.00 0.00 0.00 2.39
79 80 4.806640 TGTGTCTTCTGTCATGAGCATA 57.193 40.909 0.00 0.00 0.00 3.14
81 82 3.690475 ATGTGTCTTCTGTCATGAGCA 57.310 42.857 0.00 0.00 0.00 4.26
82 83 3.555139 GCTATGTGTCTTCTGTCATGAGC 59.445 47.826 0.00 0.00 0.00 4.26
83 84 4.118410 GGCTATGTGTCTTCTGTCATGAG 58.882 47.826 0.00 0.00 0.00 2.90
85 86 3.620374 GTGGCTATGTGTCTTCTGTCATG 59.380 47.826 0.00 0.00 0.00 3.07
86 87 3.261643 TGTGGCTATGTGTCTTCTGTCAT 59.738 43.478 0.00 0.00 0.00 3.06
87 88 2.632512 TGTGGCTATGTGTCTTCTGTCA 59.367 45.455 0.00 0.00 0.00 3.58
88 89 3.056536 TCTGTGGCTATGTGTCTTCTGTC 60.057 47.826 0.00 0.00 0.00 3.51
90 91 3.194329 TCTCTGTGGCTATGTGTCTTCTG 59.806 47.826 0.00 0.00 0.00 3.02
91 92 3.435275 TCTCTGTGGCTATGTGTCTTCT 58.565 45.455 0.00 0.00 0.00 2.85
93 94 4.623932 TTTCTCTGTGGCTATGTGTCTT 57.376 40.909 0.00 0.00 0.00 3.01
94 95 4.469227 AGATTTCTCTGTGGCTATGTGTCT 59.531 41.667 0.00 0.00 0.00 3.41
95 96 4.764172 AGATTTCTCTGTGGCTATGTGTC 58.236 43.478 0.00 0.00 0.00 3.67
96 97 4.764172 GAGATTTCTCTGTGGCTATGTGT 58.236 43.478 0.22 0.00 39.81 3.72
110 111 5.651139 CCATTGATGTGTCCAAGAGATTTCT 59.349 40.000 0.00 0.00 34.29 2.52
111 112 5.163581 CCCATTGATGTGTCCAAGAGATTTC 60.164 44.000 0.00 0.00 0.00 2.17
112 113 4.708421 CCCATTGATGTGTCCAAGAGATTT 59.292 41.667 0.00 0.00 0.00 2.17
113 114 4.018141 TCCCATTGATGTGTCCAAGAGATT 60.018 41.667 0.00 0.00 0.00 2.40
115 116 2.912295 TCCCATTGATGTGTCCAAGAGA 59.088 45.455 0.00 0.00 0.00 3.10
117 118 3.524789 AGATCCCATTGATGTGTCCAAGA 59.475 43.478 0.00 0.00 32.41 3.02
118 119 3.894759 AGATCCCATTGATGTGTCCAAG 58.105 45.455 0.00 0.00 32.41 3.61
119 120 4.474651 AGTAGATCCCATTGATGTGTCCAA 59.525 41.667 0.00 0.00 32.41 3.53
120 121 4.040047 AGTAGATCCCATTGATGTGTCCA 58.960 43.478 0.00 0.00 32.41 4.02
121 122 4.384056 CAGTAGATCCCATTGATGTGTCC 58.616 47.826 0.00 0.00 32.41 4.02
122 123 4.101585 TCCAGTAGATCCCATTGATGTGTC 59.898 45.833 0.00 0.00 32.41 3.67
124 125 4.694760 TCCAGTAGATCCCATTGATGTG 57.305 45.455 0.00 0.00 32.41 3.21
126 127 5.238624 ACATCCAGTAGATCCCATTGATG 57.761 43.478 9.39 9.39 32.41 3.07
127 128 5.628130 CAACATCCAGTAGATCCCATTGAT 58.372 41.667 0.00 0.00 36.01 2.57
128 129 4.686944 GCAACATCCAGTAGATCCCATTGA 60.687 45.833 0.00 0.00 30.59 2.57
129 130 3.567164 GCAACATCCAGTAGATCCCATTG 59.433 47.826 0.00 0.00 30.59 2.82
131 132 2.779430 TGCAACATCCAGTAGATCCCAT 59.221 45.455 0.00 0.00 30.59 4.00
133 134 2.092968 TGTGCAACATCCAGTAGATCCC 60.093 50.000 0.00 0.00 45.67 3.85
134 135 3.266510 TGTGCAACATCCAGTAGATCC 57.733 47.619 0.00 0.00 45.67 3.36
159 160 4.513406 TCCATTCTAGCCCCGTATTTTT 57.487 40.909 0.00 0.00 0.00 1.94
160 161 4.724279 ATCCATTCTAGCCCCGTATTTT 57.276 40.909 0.00 0.00 0.00 1.82
162 163 6.012858 TCAATAATCCATTCTAGCCCCGTATT 60.013 38.462 0.00 0.00 0.00 1.89
165 166 3.650942 TCAATAATCCATTCTAGCCCCGT 59.349 43.478 0.00 0.00 0.00 5.28
166 167 4.286297 TCAATAATCCATTCTAGCCCCG 57.714 45.455 0.00 0.00 0.00 5.73
167 168 4.460731 GCTTCAATAATCCATTCTAGCCCC 59.539 45.833 0.00 0.00 29.62 5.80
168 169 5.182760 CAGCTTCAATAATCCATTCTAGCCC 59.817 44.000 0.00 0.00 33.48 5.19
169 170 5.335504 GCAGCTTCAATAATCCATTCTAGCC 60.336 44.000 0.00 0.00 33.48 3.93
170 171 5.240183 TGCAGCTTCAATAATCCATTCTAGC 59.760 40.000 0.00 0.00 33.32 3.42
171 172 6.872628 TGCAGCTTCAATAATCCATTCTAG 57.127 37.500 0.00 0.00 0.00 2.43
172 173 8.953313 CATATGCAGCTTCAATAATCCATTCTA 58.047 33.333 0.00 0.00 0.00 2.10
174 175 7.823665 TCATATGCAGCTTCAATAATCCATTC 58.176 34.615 0.00 0.00 0.00 2.67
176 177 7.834681 AGATCATATGCAGCTTCAATAATCCAT 59.165 33.333 0.00 0.00 0.00 3.41
177 178 7.173032 AGATCATATGCAGCTTCAATAATCCA 58.827 34.615 0.00 0.00 0.00 3.41
178 179 7.627298 AGATCATATGCAGCTTCAATAATCC 57.373 36.000 0.00 0.00 0.00 3.01
181 182 9.379791 CAGATAGATCATATGCAGCTTCAATAA 57.620 33.333 0.00 0.00 0.00 1.40
183 184 7.621796 TCAGATAGATCATATGCAGCTTCAAT 58.378 34.615 0.00 0.00 0.00 2.57
184 185 7.001099 TCAGATAGATCATATGCAGCTTCAA 57.999 36.000 0.00 0.00 0.00 2.69
186 187 8.495361 AATTCAGATAGATCATATGCAGCTTC 57.505 34.615 0.00 0.00 0.00 3.86
187 188 8.865420 AAATTCAGATAGATCATATGCAGCTT 57.135 30.769 0.00 0.00 0.00 3.74
188 189 9.955102 TTAAATTCAGATAGATCATATGCAGCT 57.045 29.630 0.00 0.00 0.00 4.24
199 200 9.072375 GCCTAAGCCTTTTAAATTCAGATAGAT 57.928 33.333 0.00 0.00 0.00 1.98
202 203 8.275040 AGAGCCTAAGCCTTTTAAATTCAGATA 58.725 33.333 0.00 0.00 41.25 1.98
203 204 7.122048 AGAGCCTAAGCCTTTTAAATTCAGAT 58.878 34.615 0.00 0.00 41.25 2.90
204 205 6.485171 AGAGCCTAAGCCTTTTAAATTCAGA 58.515 36.000 0.00 0.00 41.25 3.27
205 206 6.765915 AGAGCCTAAGCCTTTTAAATTCAG 57.234 37.500 0.00 0.00 41.25 3.02
207 208 9.521503 CATAAAGAGCCTAAGCCTTTTAAATTC 57.478 33.333 5.48 0.00 39.07 2.17
209 210 8.595362 ACATAAAGAGCCTAAGCCTTTTAAAT 57.405 30.769 5.48 0.00 39.07 1.40
210 211 8.303876 CAACATAAAGAGCCTAAGCCTTTTAAA 58.696 33.333 5.48 0.00 39.07 1.52
211 212 7.576856 GCAACATAAAGAGCCTAAGCCTTTTAA 60.577 37.037 5.48 0.00 39.07 1.52
212 213 6.127730 GCAACATAAAGAGCCTAAGCCTTTTA 60.128 38.462 5.48 0.52 39.07 1.52
213 214 5.336770 GCAACATAAAGAGCCTAAGCCTTTT 60.337 40.000 5.48 0.00 39.07 2.27
214 215 4.158579 GCAACATAAAGAGCCTAAGCCTTT 59.841 41.667 0.00 0.00 40.41 3.11
215 216 3.696548 GCAACATAAAGAGCCTAAGCCTT 59.303 43.478 0.00 0.00 41.25 4.35
216 217 3.054065 AGCAACATAAAGAGCCTAAGCCT 60.054 43.478 0.00 0.00 41.25 4.58
218 219 3.691609 ACAGCAACATAAAGAGCCTAAGC 59.308 43.478 0.00 0.00 40.32 3.09
219 220 4.095483 CCACAGCAACATAAAGAGCCTAAG 59.905 45.833 0.00 0.00 0.00 2.18
220 221 4.009675 CCACAGCAACATAAAGAGCCTAA 58.990 43.478 0.00 0.00 0.00 2.69
221 222 3.609853 CCACAGCAACATAAAGAGCCTA 58.390 45.455 0.00 0.00 0.00 3.93
222 223 2.440409 CCACAGCAACATAAAGAGCCT 58.560 47.619 0.00 0.00 0.00 4.58
223 224 1.135286 GCCACAGCAACATAAAGAGCC 60.135 52.381 0.00 0.00 39.53 4.70
224 225 1.466360 CGCCACAGCAACATAAAGAGC 60.466 52.381 0.00 0.00 39.83 4.09
225 226 1.806542 ACGCCACAGCAACATAAAGAG 59.193 47.619 0.00 0.00 39.83 2.85
226 227 1.890876 ACGCCACAGCAACATAAAGA 58.109 45.000 0.00 0.00 39.83 2.52
227 228 4.355543 AATACGCCACAGCAACATAAAG 57.644 40.909 0.00 0.00 39.83 1.85
228 229 4.480541 CAAATACGCCACAGCAACATAAA 58.519 39.130 0.00 0.00 39.83 1.40
230 231 2.421775 CCAAATACGCCACAGCAACATA 59.578 45.455 0.00 0.00 39.83 2.29
231 232 1.202114 CCAAATACGCCACAGCAACAT 59.798 47.619 0.00 0.00 39.83 2.71
232 233 0.595588 CCAAATACGCCACAGCAACA 59.404 50.000 0.00 0.00 39.83 3.33
235 236 1.444836 GTACCAAATACGCCACAGCA 58.555 50.000 0.00 0.00 39.83 4.41
244 245 4.809426 CCTCATTCCTGACGTACCAAATAC 59.191 45.833 0.00 0.00 0.00 1.89
246 247 3.263425 ACCTCATTCCTGACGTACCAAAT 59.737 43.478 0.00 0.00 0.00 2.32
247 248 2.635915 ACCTCATTCCTGACGTACCAAA 59.364 45.455 0.00 0.00 0.00 3.28
249 250 1.933021 ACCTCATTCCTGACGTACCA 58.067 50.000 0.00 0.00 0.00 3.25
252 253 2.426024 GCACTACCTCATTCCTGACGTA 59.574 50.000 0.00 0.00 0.00 3.57
253 254 1.204941 GCACTACCTCATTCCTGACGT 59.795 52.381 0.00 0.00 0.00 4.34
254 255 1.204704 TGCACTACCTCATTCCTGACG 59.795 52.381 0.00 0.00 0.00 4.35
255 256 3.201290 CATGCACTACCTCATTCCTGAC 58.799 50.000 0.00 0.00 0.00 3.51
256 257 2.840038 ACATGCACTACCTCATTCCTGA 59.160 45.455 0.00 0.00 0.00 3.86
257 258 2.941064 CACATGCACTACCTCATTCCTG 59.059 50.000 0.00 0.00 0.00 3.86
258 259 2.840038 TCACATGCACTACCTCATTCCT 59.160 45.455 0.00 0.00 0.00 3.36
259 260 3.266510 TCACATGCACTACCTCATTCC 57.733 47.619 0.00 0.00 0.00 3.01
260 261 4.142600 GGTTTCACATGCACTACCTCATTC 60.143 45.833 0.00 0.00 0.00 2.67
261 262 3.758554 GGTTTCACATGCACTACCTCATT 59.241 43.478 0.00 0.00 0.00 2.57
262 263 3.244875 TGGTTTCACATGCACTACCTCAT 60.245 43.478 0.00 0.00 0.00 2.90
264 265 2.484264 GTGGTTTCACATGCACTACCTC 59.516 50.000 0.00 0.00 43.13 3.85
265 266 2.106511 AGTGGTTTCACATGCACTACCT 59.893 45.455 0.00 0.00 45.91 3.08
267 268 2.350772 GCAGTGGTTTCACATGCACTAC 60.351 50.000 0.00 0.00 45.91 2.73
268 269 1.879380 GCAGTGGTTTCACATGCACTA 59.121 47.619 0.00 0.00 45.91 2.74
269 270 0.670162 GCAGTGGTTTCACATGCACT 59.330 50.000 0.00 0.00 45.91 4.40
270 271 0.385029 TGCAGTGGTTTCACATGCAC 59.615 50.000 14.61 0.00 44.65 4.57
272 273 1.860326 GTTTGCAGTGGTTTCACATGC 59.140 47.619 0.00 11.25 45.91 4.06
273 274 3.441496 AGTTTGCAGTGGTTTCACATG 57.559 42.857 0.00 0.00 45.91 3.21
274 275 3.195396 ACAAGTTTGCAGTGGTTTCACAT 59.805 39.130 0.00 0.00 45.91 3.21
275 276 2.560542 ACAAGTTTGCAGTGGTTTCACA 59.439 40.909 0.00 0.00 45.91 3.58
276 277 3.230743 ACAAGTTTGCAGTGGTTTCAC 57.769 42.857 0.00 0.00 43.93 3.18
277 278 3.367910 GGAACAAGTTTGCAGTGGTTTCA 60.368 43.478 0.00 0.00 0.00 2.69
279 280 2.564947 TGGAACAAGTTTGCAGTGGTTT 59.435 40.909 0.00 0.00 31.92 3.27
280 281 2.175202 TGGAACAAGTTTGCAGTGGTT 58.825 42.857 0.00 0.00 31.92 3.67
308 309 2.364324 GCCTCGGTTGTCACCATATCTA 59.636 50.000 0.00 0.00 44.53 1.98
313 314 0.038166 ATTGCCTCGGTTGTCACCAT 59.962 50.000 0.00 0.00 44.53 3.55
335 336 9.733556 TTACTGGCTGAAAATTGTCTCTTATAA 57.266 29.630 0.00 0.00 0.00 0.98
339 340 5.048434 GCTTACTGGCTGAAAATTGTCTCTT 60.048 40.000 0.00 0.00 0.00 2.85
347 348 5.183904 CCTAAAGTGCTTACTGGCTGAAAAT 59.816 40.000 0.00 0.00 0.00 1.82
349 350 4.072131 CCTAAAGTGCTTACTGGCTGAAA 58.928 43.478 0.00 0.00 0.00 2.69
350 351 3.072476 ACCTAAAGTGCTTACTGGCTGAA 59.928 43.478 0.00 0.00 0.00 3.02
352 353 3.059352 ACCTAAAGTGCTTACTGGCTG 57.941 47.619 0.00 0.00 0.00 4.85
354 355 3.190744 GGAAACCTAAAGTGCTTACTGGC 59.809 47.826 0.00 0.00 0.00 4.85
355 356 4.394729 TGGAAACCTAAAGTGCTTACTGG 58.605 43.478 0.00 0.00 0.00 4.00
357 358 5.876357 TGATGGAAACCTAAAGTGCTTACT 58.124 37.500 0.00 0.00 0.00 2.24
358 359 6.404734 CCATGATGGAAACCTAAAGTGCTTAC 60.405 42.308 5.27 0.00 40.96 2.34
397 398 6.521151 AAAATTGATCACATCTTGGGAGTC 57.479 37.500 0.00 0.00 30.64 3.36
424 425 2.559668 CCCACCGTACTGTTTGACTAGA 59.440 50.000 0.00 0.00 0.00 2.43
429 430 1.695242 ACATCCCACCGTACTGTTTGA 59.305 47.619 0.00 0.00 0.00 2.69
437 438 2.998480 ACGCCACATCCCACCGTA 60.998 61.111 0.00 0.00 0.00 4.02
439 440 4.082523 AGACGCCACATCCCACCG 62.083 66.667 0.00 0.00 0.00 4.94
466 467 3.305539 GCTCCAATGTCAAACATTCTGCA 60.306 43.478 2.42 0.00 44.91 4.41
467 468 3.057033 AGCTCCAATGTCAAACATTCTGC 60.057 43.478 2.42 7.44 44.91 4.26
468 469 4.778534 AGCTCCAATGTCAAACATTCTG 57.221 40.909 2.42 0.00 44.91 3.02
469 470 4.393062 CGTAGCTCCAATGTCAAACATTCT 59.607 41.667 2.42 0.85 44.91 2.40
472 473 3.937814 TCGTAGCTCCAATGTCAAACAT 58.062 40.909 0.00 0.00 41.31 2.71
473 474 3.394674 TCGTAGCTCCAATGTCAAACA 57.605 42.857 0.00 0.00 0.00 2.83
474 475 4.391830 TCAATCGTAGCTCCAATGTCAAAC 59.608 41.667 0.00 0.00 0.00 2.93
475 476 4.574892 TCAATCGTAGCTCCAATGTCAAA 58.425 39.130 0.00 0.00 0.00 2.69
497 498 5.796424 ACAATGCTTGAATTTGACCTTCT 57.204 34.783 3.37 0.00 0.00 2.85
541 542 0.662374 GCACATGCCGCTTGATATGC 60.662 55.000 12.88 8.55 34.31 3.14
544 545 1.869774 CTAGCACATGCCGCTTGATA 58.130 50.000 14.77 0.00 43.38 2.15
547 548 0.811219 TAGCTAGCACATGCCGCTTG 60.811 55.000 18.83 13.63 42.92 4.01
549 550 0.107456 ATTAGCTAGCACATGCCGCT 59.893 50.000 18.83 18.50 45.78 5.52
550 551 0.947244 AATTAGCTAGCACATGCCGC 59.053 50.000 18.83 3.98 43.38 6.53
551 552 2.613595 TGAAATTAGCTAGCACATGCCG 59.386 45.455 18.83 0.00 43.38 5.69
552 553 4.637483 TTGAAATTAGCTAGCACATGCC 57.363 40.909 18.83 2.41 43.38 4.40
553 554 7.529880 AAAATTGAAATTAGCTAGCACATGC 57.470 32.000 18.83 0.00 42.49 4.06
603 605 3.068732 CAGACAATCTAGAGGATCGCCAA 59.931 47.826 0.00 0.00 42.67 4.52
621 623 5.008019 TCGTCTACGGGTACATTAATCAGAC 59.992 44.000 2.24 0.00 40.29 3.51
622 624 5.125356 TCGTCTACGGGTACATTAATCAGA 58.875 41.667 2.24 0.00 40.29 3.27
623 625 5.428496 TCGTCTACGGGTACATTAATCAG 57.572 43.478 2.24 0.00 40.29 2.90
624 626 5.300034 ACATCGTCTACGGGTACATTAATCA 59.700 40.000 2.24 0.00 40.29 2.57
625 627 5.766222 ACATCGTCTACGGGTACATTAATC 58.234 41.667 2.24 0.00 40.29 1.75
626 628 5.779529 ACATCGTCTACGGGTACATTAAT 57.220 39.130 2.24 0.00 40.29 1.40
627 629 6.318648 AGTTACATCGTCTACGGGTACATTAA 59.681 38.462 2.24 0.00 40.29 1.40
629 631 4.641989 AGTTACATCGTCTACGGGTACATT 59.358 41.667 2.24 0.00 40.29 2.71
631 633 3.609853 AGTTACATCGTCTACGGGTACA 58.390 45.455 2.24 0.00 40.29 2.90
632 634 3.873952 AGAGTTACATCGTCTACGGGTAC 59.126 47.826 2.24 0.00 40.29 3.34
633 635 3.873361 CAGAGTTACATCGTCTACGGGTA 59.127 47.826 2.24 3.64 40.29 3.69
634 636 2.681848 CAGAGTTACATCGTCTACGGGT 59.318 50.000 2.24 4.57 40.29 5.28
635 637 2.681848 ACAGAGTTACATCGTCTACGGG 59.318 50.000 2.24 0.00 40.29 5.28
636 638 4.352600 AACAGAGTTACATCGTCTACGG 57.647 45.455 2.24 0.00 40.29 4.02
637 639 5.628193 ACAAAACAGAGTTACATCGTCTACG 59.372 40.000 0.00 0.00 41.45 3.51
638 640 6.639686 TCACAAAACAGAGTTACATCGTCTAC 59.360 38.462 0.00 0.00 0.00 2.59
639 641 6.741109 TCACAAAACAGAGTTACATCGTCTA 58.259 36.000 0.00 0.00 0.00 2.59
640 642 5.597806 TCACAAAACAGAGTTACATCGTCT 58.402 37.500 0.00 0.00 0.00 4.18
641 643 5.900339 TCACAAAACAGAGTTACATCGTC 57.100 39.130 0.00 0.00 0.00 4.20
642 644 6.861065 AATCACAAAACAGAGTTACATCGT 57.139 33.333 0.00 0.00 0.00 3.73
750 2330 5.599999 AATGTGAAGGGTAGCTACTAGTG 57.400 43.478 22.74 0.00 0.00 2.74
759 2339 2.094675 CAGCCCAAATGTGAAGGGTAG 58.905 52.381 0.00 0.00 44.69 3.18
770 2350 3.667360 GCAAGTCAAATTCAGCCCAAAT 58.333 40.909 0.00 0.00 0.00 2.32
806 2386 4.776308 ACGGGGAATTACTATAGATGACCC 59.224 45.833 6.78 11.47 0.00 4.46
812 2392 5.210430 TGGACAACGGGGAATTACTATAGA 58.790 41.667 6.78 0.00 0.00 1.98
813 2393 5.540400 TGGACAACGGGGAATTACTATAG 57.460 43.478 0.00 0.00 0.00 1.31
814 2394 5.954153 TTGGACAACGGGGAATTACTATA 57.046 39.130 0.00 0.00 0.00 1.31
815 2395 4.847990 TTGGACAACGGGGAATTACTAT 57.152 40.909 0.00 0.00 0.00 2.12
816 2396 4.325972 GTTTGGACAACGGGGAATTACTA 58.674 43.478 0.00 0.00 0.00 1.82
856 2439 0.687757 AGAACCTGAGCGGCCAGATA 60.688 55.000 16.73 0.00 36.29 1.98
975 2575 2.046217 GTTGGGAGGAGAACGGGC 60.046 66.667 0.00 0.00 0.00 6.13
1065 4139 3.659697 GCGATCTCGAACGCGACG 61.660 66.667 15.93 18.45 44.91 5.12
1212 4289 1.178276 GGAGCTCGAGGAAGACAGAA 58.822 55.000 15.58 0.00 0.00 3.02
1259 4336 1.066858 CCACAAGCATCCAGTCGTAGT 60.067 52.381 0.00 0.00 0.00 2.73
1294 4372 0.917259 CGTAGTGCAGCAATCGACTC 59.083 55.000 0.00 0.00 0.00 3.36
1328 4408 7.749539 AAAATGACTTTTGACTGTTAAACGG 57.250 32.000 6.51 0.00 33.33 4.44
1372 4452 4.761975 ACTCGTTTTCAACAGTGGTCTTA 58.238 39.130 0.00 0.00 0.00 2.10
1561 4644 4.679662 CAAGCAAATTCTTATGAGCTGGG 58.320 43.478 0.00 0.00 31.88 4.45
1792 4876 0.811219 TCTTCATCCTTGCCATCGCG 60.811 55.000 0.00 0.00 38.08 5.87
1800 4884 5.996513 CCTTCACATATCCTCTTCATCCTTG 59.003 44.000 0.00 0.00 0.00 3.61
1835 4919 2.395654 GGTCTCAACGTCAAGACACTC 58.604 52.381 23.74 9.60 42.99 3.51
2007 5091 5.536260 TGACACTTCTCTCAAACATCTCTG 58.464 41.667 0.00 0.00 0.00 3.35
2405 5540 2.503895 ATTGGGAACTCTGCTCCTTG 57.496 50.000 0.00 0.00 33.11 3.61
2573 5710 1.162698 CTCAGCCAACCATGTCACAG 58.837 55.000 0.00 0.00 0.00 3.66
2680 9212 1.966451 AAAGCCTGAACGGGAAGCG 60.966 57.895 3.61 0.00 0.00 4.68
2690 9222 4.000988 GAGATTAACCGAACAAAGCCTGA 58.999 43.478 0.00 0.00 0.00 3.86
2691 9223 3.751175 TGAGATTAACCGAACAAAGCCTG 59.249 43.478 0.00 0.00 0.00 4.85
2692 9224 4.015872 TGAGATTAACCGAACAAAGCCT 57.984 40.909 0.00 0.00 0.00 4.58
2693 9225 4.201920 GGATGAGATTAACCGAACAAAGCC 60.202 45.833 0.00 0.00 0.00 4.35
2694 9226 4.394920 TGGATGAGATTAACCGAACAAAGC 59.605 41.667 0.00 0.00 0.00 3.51
2695 9227 5.411361 TGTGGATGAGATTAACCGAACAAAG 59.589 40.000 0.00 0.00 0.00 2.77
2696 9228 5.309638 TGTGGATGAGATTAACCGAACAAA 58.690 37.500 0.00 0.00 0.00 2.83
2697 9229 4.900684 TGTGGATGAGATTAACCGAACAA 58.099 39.130 0.00 0.00 0.00 2.83
2698 9230 4.545208 TGTGGATGAGATTAACCGAACA 57.455 40.909 0.00 0.00 0.00 3.18
2699 9231 4.935808 ACTTGTGGATGAGATTAACCGAAC 59.064 41.667 0.00 0.00 0.00 3.95
2700 9232 4.935205 CACTTGTGGATGAGATTAACCGAA 59.065 41.667 0.00 0.00 0.00 4.30
2701 9233 4.503910 CACTTGTGGATGAGATTAACCGA 58.496 43.478 0.00 0.00 0.00 4.69
2702 9234 3.623060 CCACTTGTGGATGAGATTAACCG 59.377 47.826 14.15 0.00 0.00 4.44
2703 9235 4.843728 TCCACTTGTGGATGAGATTAACC 58.156 43.478 17.57 0.00 32.09 2.85
2714 9246 1.773635 CCCCCAATCCACTTGTGGA 59.226 57.895 22.70 22.70 42.91 4.02
2715 9247 4.440145 CCCCCAATCCACTTGTGG 57.560 61.111 13.24 13.24 32.56 4.17
2740 9272 2.284515 ATCCGTGCAAATCCTCCCCC 62.285 60.000 0.00 0.00 0.00 5.40
2741 9273 0.395724 AATCCGTGCAAATCCTCCCC 60.396 55.000 0.00 0.00 0.00 4.81
2742 9274 1.474330 AAATCCGTGCAAATCCTCCC 58.526 50.000 0.00 0.00 0.00 4.30
2743 9275 2.417243 CCAAAATCCGTGCAAATCCTCC 60.417 50.000 0.00 0.00 0.00 4.30
2744 9276 2.879826 CCAAAATCCGTGCAAATCCTC 58.120 47.619 0.00 0.00 0.00 3.71
2745 9277 1.066929 GCCAAAATCCGTGCAAATCCT 60.067 47.619 0.00 0.00 0.00 3.24
2746 9278 1.066929 AGCCAAAATCCGTGCAAATCC 60.067 47.619 0.00 0.00 0.00 3.01
2747 9279 2.368655 AGCCAAAATCCGTGCAAATC 57.631 45.000 0.00 0.00 0.00 2.17
2748 9280 2.224257 ACAAGCCAAAATCCGTGCAAAT 60.224 40.909 0.00 0.00 0.00 2.32
2749 9281 1.137872 ACAAGCCAAAATCCGTGCAAA 59.862 42.857 0.00 0.00 0.00 3.68
2750 9282 0.749649 ACAAGCCAAAATCCGTGCAA 59.250 45.000 0.00 0.00 0.00 4.08
2751 9283 1.539388 CTACAAGCCAAAATCCGTGCA 59.461 47.619 0.00 0.00 0.00 4.57
2752 9284 1.135402 CCTACAAGCCAAAATCCGTGC 60.135 52.381 0.00 0.00 0.00 5.34
2753 9285 1.472480 CCCTACAAGCCAAAATCCGTG 59.528 52.381 0.00 0.00 0.00 4.94
2754 9286 1.615919 CCCCTACAAGCCAAAATCCGT 60.616 52.381 0.00 0.00 0.00 4.69
2755 9287 1.102978 CCCCTACAAGCCAAAATCCG 58.897 55.000 0.00 0.00 0.00 4.18
2756 9288 2.525105 TCCCCTACAAGCCAAAATCC 57.475 50.000 0.00 0.00 0.00 3.01
2757 9289 6.731292 ATTAATCCCCTACAAGCCAAAATC 57.269 37.500 0.00 0.00 0.00 2.17
2758 9290 6.099701 GGAATTAATCCCCTACAAGCCAAAAT 59.900 38.462 0.00 0.00 43.00 1.82
2759 9291 5.423931 GGAATTAATCCCCTACAAGCCAAAA 59.576 40.000 0.00 0.00 43.00 2.44
2760 9292 4.959839 GGAATTAATCCCCTACAAGCCAAA 59.040 41.667 0.00 0.00 43.00 3.28
2761 9293 4.542697 GGAATTAATCCCCTACAAGCCAA 58.457 43.478 0.00 0.00 43.00 4.52
2762 9294 4.178956 GGAATTAATCCCCTACAAGCCA 57.821 45.455 0.00 0.00 43.00 4.75
2774 9306 3.052869 AGGGGGTTGAGGTGGAATTAATC 60.053 47.826 0.00 0.00 0.00 1.75
2775 9307 2.933139 AGGGGGTTGAGGTGGAATTAAT 59.067 45.455 0.00 0.00 0.00 1.40
2776 9308 2.364190 AGGGGGTTGAGGTGGAATTAA 58.636 47.619 0.00 0.00 0.00 1.40
2777 9309 2.068831 AGGGGGTTGAGGTGGAATTA 57.931 50.000 0.00 0.00 0.00 1.40
2778 9310 1.077169 GAAGGGGGTTGAGGTGGAATT 59.923 52.381 0.00 0.00 0.00 2.17
2779 9311 0.704664 GAAGGGGGTTGAGGTGGAAT 59.295 55.000 0.00 0.00 0.00 3.01
2780 9312 0.699577 TGAAGGGGGTTGAGGTGGAA 60.700 55.000 0.00 0.00 0.00 3.53
2781 9313 0.699577 TTGAAGGGGGTTGAGGTGGA 60.700 55.000 0.00 0.00 0.00 4.02
2782 9314 0.409484 ATTGAAGGGGGTTGAGGTGG 59.591 55.000 0.00 0.00 0.00 4.61
2783 9315 2.171003 GAATTGAAGGGGGTTGAGGTG 58.829 52.381 0.00 0.00 0.00 4.00
2784 9316 1.077169 GGAATTGAAGGGGGTTGAGGT 59.923 52.381 0.00 0.00 0.00 3.85
2785 9317 1.077005 TGGAATTGAAGGGGGTTGAGG 59.923 52.381 0.00 0.00 0.00 3.86
2786 9318 2.171003 GTGGAATTGAAGGGGGTTGAG 58.829 52.381 0.00 0.00 0.00 3.02
2787 9319 1.203125 GGTGGAATTGAAGGGGGTTGA 60.203 52.381 0.00 0.00 0.00 3.18
2788 9320 1.203174 AGGTGGAATTGAAGGGGGTTG 60.203 52.381 0.00 0.00 0.00 3.77
2789 9321 1.077169 GAGGTGGAATTGAAGGGGGTT 59.923 52.381 0.00 0.00 0.00 4.11
2790 9322 0.704664 GAGGTGGAATTGAAGGGGGT 59.295 55.000 0.00 0.00 0.00 4.95
2791 9323 0.704076 TGAGGTGGAATTGAAGGGGG 59.296 55.000 0.00 0.00 0.00 5.40
2792 9324 2.171003 GTTGAGGTGGAATTGAAGGGG 58.829 52.381 0.00 0.00 0.00 4.79
2793 9325 2.171003 GGTTGAGGTGGAATTGAAGGG 58.829 52.381 0.00 0.00 0.00 3.95
2794 9326 1.812571 CGGTTGAGGTGGAATTGAAGG 59.187 52.381 0.00 0.00 0.00 3.46
2795 9327 2.778299 TCGGTTGAGGTGGAATTGAAG 58.222 47.619 0.00 0.00 0.00 3.02
2796 9328 2.882137 GTTCGGTTGAGGTGGAATTGAA 59.118 45.455 0.00 0.00 0.00 2.69
2797 9329 2.158740 TGTTCGGTTGAGGTGGAATTGA 60.159 45.455 0.00 0.00 0.00 2.57
2798 9330 2.226330 TGTTCGGTTGAGGTGGAATTG 58.774 47.619 0.00 0.00 0.00 2.32
2799 9331 2.649531 TGTTCGGTTGAGGTGGAATT 57.350 45.000 0.00 0.00 0.00 2.17
2800 9332 2.504367 CTTGTTCGGTTGAGGTGGAAT 58.496 47.619 0.00 0.00 0.00 3.01
2801 9333 1.961793 CTTGTTCGGTTGAGGTGGAA 58.038 50.000 0.00 0.00 0.00 3.53
2802 9334 0.534203 GCTTGTTCGGTTGAGGTGGA 60.534 55.000 0.00 0.00 0.00 4.02
2803 9335 1.515521 GGCTTGTTCGGTTGAGGTGG 61.516 60.000 0.00 0.00 0.00 4.61
2804 9336 1.515521 GGGCTTGTTCGGTTGAGGTG 61.516 60.000 0.00 0.00 0.00 4.00
2805 9337 1.228154 GGGCTTGTTCGGTTGAGGT 60.228 57.895 0.00 0.00 0.00 3.85
2806 9338 0.955919 GAGGGCTTGTTCGGTTGAGG 60.956 60.000 0.00 0.00 0.00 3.86
2807 9339 0.250295 TGAGGGCTTGTTCGGTTGAG 60.250 55.000 0.00 0.00 0.00 3.02
2808 9340 0.400213 ATGAGGGCTTGTTCGGTTGA 59.600 50.000 0.00 0.00 0.00 3.18
2809 9341 0.523072 CATGAGGGCTTGTTCGGTTG 59.477 55.000 0.00 0.00 0.00 3.77
2810 9342 0.400213 TCATGAGGGCTTGTTCGGTT 59.600 50.000 0.00 0.00 0.00 4.44
2811 9343 0.400213 TTCATGAGGGCTTGTTCGGT 59.600 50.000 0.00 0.00 0.00 4.69
2812 9344 1.755179 ATTCATGAGGGCTTGTTCGG 58.245 50.000 0.00 0.00 0.00 4.30
2813 9345 3.855689 AAATTCATGAGGGCTTGTTCG 57.144 42.857 0.00 0.00 0.00 3.95
2814 9346 7.322664 TGATAAAAATTCATGAGGGCTTGTTC 58.677 34.615 0.00 0.00 0.00 3.18
2815 9347 7.243604 TGATAAAAATTCATGAGGGCTTGTT 57.756 32.000 0.00 0.00 0.00 2.83
2816 9348 6.855763 TGATAAAAATTCATGAGGGCTTGT 57.144 33.333 0.00 0.00 0.00 3.16
2862 9394 9.636789 AATTCAGAAATGGATTCACTGATCATA 57.363 29.630 0.00 0.00 40.72 2.15
2916 9448 4.808558 TGCACTGCCAGTTTCAATTAATC 58.191 39.130 0.00 0.00 0.00 1.75
2919 9451 3.888323 TCTTGCACTGCCAGTTTCAATTA 59.112 39.130 9.04 0.86 0.00 1.40
2997 9530 3.572255 GCCAACATCCTACCTCAAAAACA 59.428 43.478 0.00 0.00 0.00 2.83
3002 9535 1.668826 AGGCCAACATCCTACCTCAA 58.331 50.000 5.01 0.00 30.79 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.